Multiple sequence alignment - TraesCS6A01G046300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G046300 chr6A 100.000 5872 0 0 1 5872 23719878 23725749 0.000000e+00 10844
1 TraesCS6A01G046300 chr6A 93.662 284 12 3 5587 5865 212170384 212170666 2.530000e-113 420
2 TraesCS6A01G046300 chr6A 93.031 287 17 3 5586 5872 592802279 592802562 3.270000e-112 416
3 TraesCS6A01G046300 chr6D 87.806 4002 324 75 713 4597 25661121 25665075 0.000000e+00 4536
4 TraesCS6A01G046300 chr6D 90.098 1020 58 15 4604 5590 25665119 25666128 0.000000e+00 1284
5 TraesCS6A01G046300 chr6D 85.262 726 61 27 4 712 25660388 25661084 0.000000e+00 706
6 TraesCS6A01G046300 chr6B 87.766 2820 235 50 713 3452 41703025 41705814 0.000000e+00 3195
7 TraesCS6A01G046300 chr6B 87.280 1195 83 32 3441 4597 41705837 41707000 0.000000e+00 1301
8 TraesCS6A01G046300 chr6B 87.931 464 38 12 50 507 41702364 41702815 1.120000e-146 531
9 TraesCS6A01G046300 chr6B 87.749 351 40 3 4604 4954 41707043 41707390 1.970000e-109 407
10 TraesCS6A01G046300 chr6B 81.579 418 54 16 4603 5014 41749064 41749464 2.040000e-84 324
11 TraesCS6A01G046300 chr5A 93.403 288 16 3 5587 5872 378278423 378278137 1.960000e-114 424
12 TraesCS6A01G046300 chr2B 93.103 290 17 3 5585 5872 788541066 788541354 7.040000e-114 422
13 TraesCS6A01G046300 chr2B 93.929 280 13 3 5594 5872 573989678 573989402 2.530000e-113 420
14 TraesCS6A01G046300 chr4A 93.662 284 13 2 5594 5872 589103503 589103786 2.530000e-113 420
15 TraesCS6A01G046300 chr3B 93.929 280 14 3 5594 5872 74730308 74730031 2.530000e-113 420
16 TraesCS6A01G046300 chr7A 92.203 295 19 4 5580 5872 259396214 259395922 1.180000e-111 414
17 TraesCS6A01G046300 chr1A 92.466 292 17 3 5585 5872 16863232 16862942 4.230000e-111 412


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G046300 chr6A 23719878 23725749 5871 False 10844.000000 10844 100.0000 1 5872 1 chr6A.!!$F1 5871
1 TraesCS6A01G046300 chr6D 25660388 25666128 5740 False 2175.333333 4536 87.7220 4 5590 3 chr6D.!!$F1 5586
2 TraesCS6A01G046300 chr6B 41702364 41707390 5026 False 1358.500000 3195 87.6815 50 4954 4 chr6B.!!$F2 4904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.039472 ATTGCCTGTGGTGGTATGCA 59.961 50.0 0.00 0.0 0.00 3.96 F
387 398 0.102844 TGCAAAAGCAGCAGAACCAC 59.897 50.0 0.00 0.0 37.02 4.16 F
388 399 0.386838 GCAAAAGCAGCAGAACCACT 59.613 50.0 0.00 0.0 0.00 4.00 F
841 897 0.390603 CCGACGTGTTTGCATCCCTA 60.391 55.0 0.00 0.0 0.00 3.53 F
1011 1077 0.397564 TGTCAGACATGCAAGCCTCA 59.602 50.0 0.00 0.0 0.00 3.86 F
2710 2829 0.538584 TGATCTGCGCTCTGAACCAT 59.461 50.0 9.73 0.0 0.00 3.55 F
4362 4619 0.106819 CATCCTTCCTTCCTGCCCTG 60.107 60.0 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 2053 0.385029 GCACACACCAAAGCACATCA 59.615 50.0 0.00 0.00 0.00 3.07 R
1964 2054 0.385029 TGCACACACCAAAGCACATC 59.615 50.0 0.00 0.00 31.05 3.06 R
1965 2055 0.386476 CTGCACACACCAAAGCACAT 59.614 50.0 0.00 0.00 32.87 3.21 R
2600 2719 0.173481 TCAGAAGGCCAGTCGATTCG 59.827 55.0 5.01 0.00 0.00 3.34 R
2988 3140 0.107654 AAGGGCGCTCCATGAGTAAC 60.108 55.0 2.00 0.00 38.24 2.50 R
4495 4752 0.034089 ACCTGTAGGCCATTGGAAGC 60.034 55.0 5.01 0.00 39.32 3.86 R
5474 5803 0.106116 AGTTCTAGGGTAGCCGGGAG 60.106 60.0 2.18 4.84 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.553323 AGAAAATGACAACAAGATGCTGC 58.447 39.130 0.00 0.00 0.00 5.25
30 31 4.280174 AGAAAATGACAACAAGATGCTGCT 59.720 37.500 0.00 0.00 0.00 4.24
31 32 3.570926 AATGACAACAAGATGCTGCTG 57.429 42.857 0.00 0.00 0.00 4.41
42 43 2.591715 GCTGCTGTTCGGTGGTGT 60.592 61.111 0.00 0.00 0.00 4.16
43 44 2.607892 GCTGCTGTTCGGTGGTGTC 61.608 63.158 0.00 0.00 0.00 3.67
44 45 1.227527 CTGCTGTTCGGTGGTGTCA 60.228 57.895 0.00 0.00 0.00 3.58
45 46 0.603707 CTGCTGTTCGGTGGTGTCAT 60.604 55.000 0.00 0.00 0.00 3.06
46 47 0.884259 TGCTGTTCGGTGGTGTCATG 60.884 55.000 0.00 0.00 0.00 3.07
47 48 0.602638 GCTGTTCGGTGGTGTCATGA 60.603 55.000 0.00 0.00 0.00 3.07
48 49 1.148310 CTGTTCGGTGGTGTCATGAC 58.852 55.000 19.27 19.27 0.00 3.06
70 71 3.534554 TCATGAGTGGTGTATGCACATC 58.465 45.455 16.11 10.48 46.95 3.06
73 74 2.566724 TGAGTGGTGTATGCACATCTGA 59.433 45.455 16.11 4.69 46.95 3.27
77 78 2.026915 TGGTGTATGCACATCTGAAGCT 60.027 45.455 16.11 0.00 46.95 3.74
81 82 4.034510 GTGTATGCACATCTGAAGCTAACC 59.965 45.833 9.26 0.00 44.64 2.85
105 106 7.394641 ACCTTATCTTTTGATTCCCTTTGTCTC 59.605 37.037 0.00 0.00 40.19 3.36
114 115 1.425066 TCCCTTTGTCTCATTGCCTGT 59.575 47.619 0.00 0.00 0.00 4.00
115 116 1.542915 CCCTTTGTCTCATTGCCTGTG 59.457 52.381 0.00 0.00 0.00 3.66
117 118 2.233271 CTTTGTCTCATTGCCTGTGGT 58.767 47.619 0.00 0.00 0.00 4.16
118 119 1.608055 TTGTCTCATTGCCTGTGGTG 58.392 50.000 0.00 0.00 0.00 4.17
119 120 0.250858 TGTCTCATTGCCTGTGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
120 121 0.250901 GTCTCATTGCCTGTGGTGGT 60.251 55.000 0.00 0.00 0.00 4.16
121 122 1.003118 GTCTCATTGCCTGTGGTGGTA 59.997 52.381 0.00 0.00 0.00 3.25
125 126 0.039472 ATTGCCTGTGGTGGTATGCA 59.961 50.000 0.00 0.00 0.00 3.96
127 128 0.893270 TGCCTGTGGTGGTATGCAAC 60.893 55.000 0.00 0.00 0.00 4.17
158 159 9.590451 TGCATGATCAAGATTCCTTTTATTTTC 57.410 29.630 0.00 0.00 0.00 2.29
159 160 9.038803 GCATGATCAAGATTCCTTTTATTTTCC 57.961 33.333 0.00 0.00 0.00 3.13
163 164 9.958234 GATCAAGATTCCTTTTATTTTCCTAGC 57.042 33.333 0.00 0.00 0.00 3.42
164 165 9.706529 ATCAAGATTCCTTTTATTTTCCTAGCT 57.293 29.630 0.00 0.00 0.00 3.32
165 166 9.533831 TCAAGATTCCTTTTATTTTCCTAGCTT 57.466 29.630 0.00 0.00 0.00 3.74
201 202 4.081752 ACTTTGGTGACATGCTGACAAAAA 60.082 37.500 0.00 0.00 42.32 1.94
267 268 2.420022 CCAGGTTGTTATCTCAAAGGCG 59.580 50.000 0.00 0.00 0.00 5.52
271 272 4.080863 AGGTTGTTATCTCAAAGGCGATCT 60.081 41.667 0.00 0.00 0.00 2.75
292 295 4.002256 TGGTAACATGGGATGAGAGGTA 57.998 45.455 0.00 0.00 46.17 3.08
304 307 4.656112 GGATGAGAGGTATCTTTCCAAGGA 59.344 45.833 0.00 0.00 37.75 3.36
332 335 0.749649 CATTCTAGAGCTCACCGGCT 59.250 55.000 17.77 0.00 46.11 5.52
387 398 0.102844 TGCAAAAGCAGCAGAACCAC 59.897 50.000 0.00 0.00 37.02 4.16
388 399 0.386838 GCAAAAGCAGCAGAACCACT 59.613 50.000 0.00 0.00 0.00 4.00
437 450 3.326880 CCAGTGTTTTGAGGTACCTAGGT 59.673 47.826 20.57 20.57 0.00 3.08
440 453 6.106673 CAGTGTTTTGAGGTACCTAGGTATG 58.893 44.000 24.36 10.19 32.82 2.39
444 457 7.662669 GTGTTTTGAGGTACCTAGGTATGAAAA 59.337 37.037 24.36 17.72 32.82 2.29
446 459 7.563724 TTTGAGGTACCTAGGTATGAAAACT 57.436 36.000 24.36 11.98 32.82 2.66
447 460 8.669055 TTTGAGGTACCTAGGTATGAAAACTA 57.331 34.615 24.36 7.87 32.82 2.24
464 477 2.810164 ACTACTTCCAGTGTCCTCCTC 58.190 52.381 0.00 0.00 0.00 3.71
465 478 2.110188 ACTACTTCCAGTGTCCTCCTCA 59.890 50.000 0.00 0.00 0.00 3.86
480 493 3.368220 CCTCCTCATCAGATTATCCAGCG 60.368 52.174 0.00 0.00 0.00 5.18
497 510 6.422776 TCCAGCGTATTTTCTCTTGAATTC 57.577 37.500 0.00 0.00 31.56 2.17
521 534 1.978617 GGTTCATGGGCAGTGGTGG 60.979 63.158 0.00 0.00 0.00 4.61
540 553 3.876320 GTGGTACTTTTGTGAACGGGTTA 59.124 43.478 0.00 0.00 0.00 2.85
570 583 5.869344 TGACTGTCGATGAAATTAGTGAAGG 59.131 40.000 2.98 0.00 0.00 3.46
607 623 5.645929 TGAAGCTACTGTTTGTGTCTGAAAA 59.354 36.000 0.00 0.00 0.00 2.29
608 624 6.150307 TGAAGCTACTGTTTGTGTCTGAAAAA 59.850 34.615 0.00 0.00 0.00 1.94
609 625 6.699575 AGCTACTGTTTGTGTCTGAAAAAT 57.300 33.333 0.00 0.00 0.00 1.82
610 626 7.801716 AGCTACTGTTTGTGTCTGAAAAATA 57.198 32.000 0.00 0.00 0.00 1.40
611 627 8.396272 AGCTACTGTTTGTGTCTGAAAAATAT 57.604 30.769 0.00 0.00 0.00 1.28
612 628 9.502091 AGCTACTGTTTGTGTCTGAAAAATATA 57.498 29.630 0.00 0.00 0.00 0.86
623 639 8.830580 GTGTCTGAAAAATATATTAGCAGCTCA 58.169 33.333 0.00 0.00 0.00 4.26
642 658 2.702478 TCAGGATCTTAGTGCATCCAGG 59.298 50.000 4.66 0.00 41.16 4.45
650 666 1.915141 AGTGCATCCAGGTTTTCCAG 58.085 50.000 0.00 0.00 43.73 3.86
654 672 1.549203 CATCCAGGTTTTCCAGGTGG 58.451 55.000 0.00 0.00 45.50 4.61
661 679 1.109323 GTTTTCCAGGTGGCTGCACT 61.109 55.000 0.50 0.00 34.44 4.40
662 680 0.476338 TTTTCCAGGTGGCTGCACTA 59.524 50.000 0.50 0.00 34.44 2.74
664 682 1.841302 TTCCAGGTGGCTGCACTAGG 61.841 60.000 0.50 4.91 34.44 3.02
671 689 1.055849 TGGCTGCACTAGGAACTTGA 58.944 50.000 0.50 0.00 41.75 3.02
693 711 3.599730 TCACGCAAGAGTTGAGATGAT 57.400 42.857 0.00 0.00 43.62 2.45
698 717 7.264947 TCACGCAAGAGTTGAGATGATATTTA 58.735 34.615 0.00 0.00 43.62 1.40
699 718 7.763985 TCACGCAAGAGTTGAGATGATATTTAA 59.236 33.333 0.00 0.00 43.62 1.52
723 778 1.823470 TGGTGTGTGCAAGTCCAGC 60.823 57.895 0.00 0.00 0.00 4.85
727 782 0.950555 TGTGTGCAAGTCCAGCGATC 60.951 55.000 0.00 0.00 33.85 3.69
742 797 4.215399 CCAGCGATCTCACTTGGTTTAAAA 59.785 41.667 0.00 0.00 0.00 1.52
750 805 6.552008 TCTCACTTGGTTTAAAATCCATCCT 58.448 36.000 0.00 0.00 33.50 3.24
756 811 8.585018 ACTTGGTTTAAAATCCATCCTAGTTTG 58.415 33.333 0.00 0.00 33.50 2.93
810 866 5.095490 GCAATTTTCTAGAACGGGTCAATG 58.905 41.667 4.18 0.00 0.00 2.82
837 893 2.175811 GGCCGACGTGTTTGCATC 59.824 61.111 0.00 0.00 0.00 3.91
840 896 1.671054 CCGACGTGTTTGCATCCCT 60.671 57.895 0.00 0.00 0.00 4.20
841 897 0.390603 CCGACGTGTTTGCATCCCTA 60.391 55.000 0.00 0.00 0.00 3.53
842 898 1.434555 CGACGTGTTTGCATCCCTAA 58.565 50.000 0.00 0.00 0.00 2.69
843 899 2.006888 CGACGTGTTTGCATCCCTAAT 58.993 47.619 0.00 0.00 0.00 1.73
855 911 5.639139 TGCATCCCTAATTAACCATATGCA 58.361 37.500 12.75 12.75 44.33 3.96
867 923 5.779529 AACCATATGCATCCTGATGTTTC 57.220 39.130 0.19 0.00 40.80 2.78
868 924 3.817084 ACCATATGCATCCTGATGTTTCG 59.183 43.478 0.19 0.00 40.80 3.46
876 932 1.550524 TCCTGATGTTTCGAGTGAGGG 59.449 52.381 0.00 0.00 0.00 4.30
906 964 1.070821 TCTTTCGTCAGCGCAATCAG 58.929 50.000 11.47 0.00 38.14 2.90
907 965 0.519999 CTTTCGTCAGCGCAATCAGC 60.520 55.000 11.47 0.00 38.14 4.26
920 978 5.297776 AGCGCAATCAGCAAGAAAATATACT 59.702 36.000 11.47 0.00 46.13 2.12
931 994 7.340232 AGCAAGAAAATATACTTGATCTTGGCA 59.660 33.333 16.22 0.00 43.98 4.92
935 998 5.972107 AATATACTTGATCTTGGCATGCC 57.028 39.130 30.54 30.54 0.00 4.40
936 999 2.804986 TACTTGATCTTGGCATGCCA 57.195 45.000 35.59 35.59 45.63 4.92
950 1013 2.867975 GCATGCCAAACATATTTGCCTC 59.132 45.455 6.36 0.00 43.38 4.70
952 1015 3.591196 TGCCAAACATATTTGCCTCAC 57.409 42.857 0.00 0.00 43.38 3.51
961 1025 4.337555 ACATATTTGCCTCACTGCAGATTC 59.662 41.667 23.35 5.06 43.21 2.52
977 1043 4.040461 GCAGATTCAGGTTAGCCCAGTATA 59.960 45.833 0.00 0.00 34.66 1.47
978 1044 5.542779 CAGATTCAGGTTAGCCCAGTATAC 58.457 45.833 0.00 0.00 34.66 1.47
1011 1077 0.397564 TGTCAGACATGCAAGCCTCA 59.602 50.000 0.00 0.00 0.00 3.86
1013 1079 0.671472 TCAGACATGCAAGCCTCACG 60.671 55.000 0.00 0.00 0.00 4.35
1023 1089 0.886490 AAGCCTCACGGTCTGCTTTG 60.886 55.000 3.28 0.00 40.98 2.77
1172 1238 9.650539 CAATGGTAGGACTGATATTTCTATCTG 57.349 37.037 0.00 0.00 38.55 2.90
1205 1275 9.160496 GTTCACAATCATCATCTAGTTCTTCTT 57.840 33.333 0.00 0.00 0.00 2.52
1208 1278 9.327628 CACAATCATCATCTAGTTCTTCTTGAT 57.672 33.333 0.00 0.00 38.70 2.57
1223 1293 7.846101 TCTTCTTGATCAGGAGCTATATCAA 57.154 36.000 7.65 10.38 36.32 2.57
1280 1350 1.638133 CAGAAGACAGATCCACAGCG 58.362 55.000 0.00 0.00 0.00 5.18
1357 1427 4.863152 TGCATTCTCATATTGTGACACG 57.137 40.909 0.22 0.00 32.22 4.49
1435 1505 2.511600 GGCTGTCGTTCCATCCCG 60.512 66.667 0.00 0.00 0.00 5.14
1481 1551 1.677552 GAACGGGGAGAAAGGCTCA 59.322 57.895 0.00 0.00 45.81 4.26
1505 1575 5.400485 ACGTACGACACTTCAGATTGTTAAC 59.600 40.000 24.41 0.00 0.00 2.01
1537 1607 5.491070 TGTGGAGAAAGAGATACATGTTGG 58.509 41.667 2.30 0.00 0.00 3.77
1542 1612 5.738909 AGAAAGAGATACATGTTGGTCAGG 58.261 41.667 2.30 0.00 0.00 3.86
1582 1652 1.651987 ACCGATGAGTGGTAAATGCG 58.348 50.000 0.00 0.00 38.15 4.73
1606 1676 3.129988 AGCATAAAGTCTGCATTTCCAGC 59.870 43.478 0.00 0.00 42.15 4.85
1615 1688 0.813821 GCATTTCCAGCCTCTTCACC 59.186 55.000 0.00 0.00 0.00 4.02
1616 1689 1.467920 CATTTCCAGCCTCTTCACCC 58.532 55.000 0.00 0.00 0.00 4.61
1651 1724 8.137210 TGTAACATATGACATTATGTTGTCGG 57.863 34.615 21.22 0.00 46.84 4.79
1653 1726 9.251792 GTAACATATGACATTATGTTGTCGGTA 57.748 33.333 21.22 8.01 46.84 4.02
1697 1772 2.093235 CCTGGAACCATGAAGAGACCTC 60.093 54.545 0.00 0.00 0.00 3.85
1704 1779 2.288702 CCATGAAGAGACCTCCATAGCG 60.289 54.545 0.00 0.00 0.00 4.26
1737 1812 1.106944 AGCCACCTCAACCAAAACCG 61.107 55.000 0.00 0.00 0.00 4.44
1746 1821 1.000717 CAACCAAAACCGGCTTTCGAT 60.001 47.619 0.00 0.00 42.43 3.59
1764 1839 3.130633 CGATGATGCCGGATACAGAAAA 58.869 45.455 5.05 0.00 0.00 2.29
1806 1881 6.017192 AGACTGTAATAGTTGGAGAGGACAA 58.983 40.000 0.00 0.00 40.53 3.18
1880 1955 6.072728 CCCTCGTTGTTTGTTCTTGATATTGA 60.073 38.462 0.00 0.00 0.00 2.57
1910 2000 3.338249 TCTCTTAGCACACCTTCATTGC 58.662 45.455 0.00 0.00 36.45 3.56
1919 2009 3.763360 CACACCTTCATTGCCAATCCTTA 59.237 43.478 0.00 0.00 0.00 2.69
1922 2012 5.105228 ACACCTTCATTGCCAATCCTTAATG 60.105 40.000 0.00 0.00 33.09 1.90
1929 2019 2.094078 TGCCAATCCTTAATGCAACAGC 60.094 45.455 0.00 0.00 0.00 4.40
1959 2049 8.190784 GCTTACTAAACCAAGCATGTATTGATT 58.809 33.333 12.65 9.98 45.20 2.57
1967 2057 9.537192 AACCAAGCATGTATTGATTAATTGATG 57.463 29.630 12.65 0.00 30.59 3.07
1968 2058 8.698210 ACCAAGCATGTATTGATTAATTGATGT 58.302 29.630 12.65 0.00 30.59 3.06
1969 2059 8.974408 CCAAGCATGTATTGATTAATTGATGTG 58.026 33.333 12.65 0.00 30.59 3.21
1978 2068 6.343716 TGATTAATTGATGTGCTTTGGTGT 57.656 33.333 0.00 0.00 0.00 4.16
1979 2069 6.157904 TGATTAATTGATGTGCTTTGGTGTG 58.842 36.000 0.00 0.00 0.00 3.82
2000 2090 1.014564 GCAGTGGAGAAGTACGTGCC 61.015 60.000 0.00 0.00 0.00 5.01
2009 2099 0.679002 AAGTACGTGCCGCTAGAGGA 60.679 55.000 17.75 0.00 0.00 3.71
2019 2109 2.671888 GCCGCTAGAGGAGTTACAAAAC 59.328 50.000 17.75 0.00 35.72 2.43
2029 2119 4.278419 AGGAGTTACAAAACCAATGAGTGC 59.722 41.667 0.00 0.00 36.15 4.40
2063 2153 2.048127 GCTCCGCCGTCTTCAAGT 60.048 61.111 0.00 0.00 0.00 3.16
2071 2161 1.361668 CCGTCTTCAAGTGGCCATCG 61.362 60.000 9.72 0.00 0.00 3.84
2084 2174 1.669795 GGCCATCGAAAGCTTTTGGTG 60.670 52.381 26.74 26.74 33.37 4.17
2205 2295 3.832527 TCCCCTTTTGAAGAAGAACCAG 58.167 45.455 0.00 0.00 0.00 4.00
2222 2312 0.595053 CAGATGCCGATAACGCGTCT 60.595 55.000 14.44 2.23 39.97 4.18
2226 2316 1.343821 GCCGATAACGCGTCTGTTG 59.656 57.895 14.44 5.45 38.29 3.33
2261 2351 7.133891 TGCTGTAACTCTGAATTTTTAGAGC 57.866 36.000 10.93 0.00 43.26 4.09
2263 2353 7.018235 GCTGTAACTCTGAATTTTTAGAGCAC 58.982 38.462 10.93 9.84 43.26 4.40
2301 2395 6.790232 TTTGTTCAAATGGAAGGAGAAAGT 57.210 33.333 0.00 0.00 35.82 2.66
2305 2399 6.264518 TGTTCAAATGGAAGGAGAAAGTAACC 59.735 38.462 0.00 0.00 35.82 2.85
2314 2408 6.465464 GGAAGGAGAAAGTAACCCTTAACTGT 60.465 42.308 0.00 0.00 38.97 3.55
2444 2538 3.938963 ACGGTTCAGGTATGCTTTGTATG 59.061 43.478 0.00 0.00 0.00 2.39
2461 2558 7.065803 GCTTTGTATGAATACTCTTGCACCTTA 59.934 37.037 2.36 0.00 34.41 2.69
2467 2564 7.615582 TGAATACTCTTGCACCTTATTGAAG 57.384 36.000 0.00 0.00 0.00 3.02
2487 2590 3.195661 AGGATTTCAAGCCGATACGTTC 58.804 45.455 0.00 0.00 40.07 3.95
2545 2664 3.287222 TGGAAAACTCCTGGTGTTTCTG 58.713 45.455 22.77 0.00 36.72 3.02
2551 2670 2.771943 ACTCCTGGTGTTTCTGTCTTCA 59.228 45.455 0.00 0.00 0.00 3.02
2563 2682 3.006940 TCTGTCTTCAAAACGTGCAGTT 58.993 40.909 0.00 0.00 46.76 3.16
2710 2829 0.538584 TGATCTGCGCTCTGAACCAT 59.461 50.000 9.73 0.00 0.00 3.55
2711 2830 1.065926 TGATCTGCGCTCTGAACCATT 60.066 47.619 9.73 0.00 0.00 3.16
2712 2831 2.012673 GATCTGCGCTCTGAACCATTT 58.987 47.619 9.73 0.00 0.00 2.32
2713 2832 2.760634 TCTGCGCTCTGAACCATTTA 57.239 45.000 9.73 0.00 0.00 1.40
2714 2833 3.266510 TCTGCGCTCTGAACCATTTAT 57.733 42.857 9.73 0.00 0.00 1.40
2715 2834 3.609853 TCTGCGCTCTGAACCATTTATT 58.390 40.909 9.73 0.00 0.00 1.40
2716 2835 4.765273 TCTGCGCTCTGAACCATTTATTA 58.235 39.130 9.73 0.00 0.00 0.98
2798 2928 1.064906 CCATGCTGTCTGATCCTTGGT 60.065 52.381 0.00 0.00 0.00 3.67
2810 2940 6.038050 GTCTGATCCTTGGTTTTCTGATCATC 59.962 42.308 0.00 0.00 40.53 2.92
2978 3130 5.429130 GGGAAGTAACCAGAATAAGTCCAG 58.571 45.833 0.00 0.00 0.00 3.86
3002 3154 1.478510 ACTCAGGTTACTCATGGAGCG 59.521 52.381 0.00 0.00 32.04 5.03
3015 3167 0.610509 TGGAGCGCCCTTGCAATAAA 60.611 50.000 2.29 0.00 37.32 1.40
3041 3193 4.333926 GCAACAATGTCCTCTCTGGTAATC 59.666 45.833 0.00 0.00 37.07 1.75
3050 3202 3.706594 CCTCTCTGGTAATCCTACTTGCA 59.293 47.826 0.00 0.00 34.23 4.08
3066 3218 1.239296 TGCAATCAGAGGCAGTGTGC 61.239 55.000 0.00 0.00 44.08 4.57
3124 3277 0.534412 ATGCCTCTCTTCTGACCGTG 59.466 55.000 0.00 0.00 0.00 4.94
3136 3291 1.514443 GACCGTGCTAGTGTCGAGC 60.514 63.158 0.00 0.00 40.53 5.03
3160 3315 1.202698 CCCATCGACCCTCCTCAAATC 60.203 57.143 0.00 0.00 0.00 2.17
3195 3353 1.134580 AGCGTCAACAGAGGATCATGG 60.135 52.381 0.00 0.00 37.82 3.66
3197 3355 2.159099 GCGTCAACAGAGGATCATGGTA 60.159 50.000 0.00 0.00 37.82 3.25
3198 3356 3.448686 CGTCAACAGAGGATCATGGTAC 58.551 50.000 0.00 0.00 37.82 3.34
3211 3372 3.192922 GGTACACGCGCATGGGTC 61.193 66.667 8.88 0.00 39.58 4.46
3263 3424 1.886542 CCAGTAACAAGGTTCCTTGCC 59.113 52.381 25.69 16.16 45.10 4.52
3272 3433 1.598130 GTTCCTTGCCGACTGCTGT 60.598 57.895 0.00 0.00 42.00 4.40
3286 3450 6.237861 GCCGACTGCTGTAAATTTCTAAGTAG 60.238 42.308 0.00 2.89 36.87 2.57
3319 3486 9.985730 TTTCTTTGCTCAATAATTCACTCAAAT 57.014 25.926 0.00 0.00 0.00 2.32
3402 3569 1.212934 ACTCAGAGTCCCGGTCCCTA 61.213 60.000 0.00 0.00 0.00 3.53
3501 3704 9.877178 CCAATCCTTCACTAGATTATATGTACC 57.123 37.037 0.00 0.00 31.55 3.34
3635 3838 6.993175 TCTGTATCAAGCTATTCGAAATCG 57.007 37.500 0.00 0.00 41.45 3.34
3647 3850 0.437295 CGAAATCGTCGGCGTTTCTT 59.563 50.000 24.18 10.44 46.45 2.52
3649 3852 1.193874 GAAATCGTCGGCGTTTCTTGT 59.806 47.619 21.69 3.23 36.35 3.16
3676 3879 4.021456 ACTTGGGTTTAACCTGCTTATTGC 60.021 41.667 14.27 0.00 38.64 3.56
3719 3932 7.698506 ATCTTGAAATTCTCTGCAATTCTGA 57.301 32.000 0.00 0.00 0.00 3.27
3778 3991 8.568794 CATCATCATCATCTTACTCATGCTTTT 58.431 33.333 0.00 0.00 0.00 2.27
3787 4000 9.874215 CATCTTACTCATGCTTTTGTATACATG 57.126 33.333 6.36 0.87 40.97 3.21
3884 4105 4.232221 CTCTCCAATTGTGTTGTTGATGC 58.768 43.478 4.43 0.00 0.00 3.91
3892 4113 2.618241 TGTGTTGTTGATGCTTGTCCTC 59.382 45.455 0.00 0.00 0.00 3.71
3893 4114 2.880890 GTGTTGTTGATGCTTGTCCTCT 59.119 45.455 0.00 0.00 0.00 3.69
3894 4115 3.058639 GTGTTGTTGATGCTTGTCCTCTC 60.059 47.826 0.00 0.00 0.00 3.20
3895 4116 3.181451 TGTTGTTGATGCTTGTCCTCTCT 60.181 43.478 0.00 0.00 0.00 3.10
3896 4117 3.325293 TGTTGATGCTTGTCCTCTCTC 57.675 47.619 0.00 0.00 0.00 3.20
3897 4118 2.634453 TGTTGATGCTTGTCCTCTCTCA 59.366 45.455 0.00 0.00 0.00 3.27
3898 4119 3.262660 TGTTGATGCTTGTCCTCTCTCAT 59.737 43.478 0.00 0.00 0.00 2.90
3902 4123 3.777106 TGCTTGTCCTCTCTCATTGTT 57.223 42.857 0.00 0.00 0.00 2.83
3977 4208 0.324943 ACCACGTGATCAAGGAAGGG 59.675 55.000 19.30 10.56 0.00 3.95
4057 4288 2.586425 CCATTTAATCGGCCAGGTGAT 58.414 47.619 2.24 0.00 0.00 3.06
4075 4306 4.506271 GGTGATCATCCTAGCAACCATGAT 60.506 45.833 0.00 1.97 38.44 2.45
4081 4323 2.104792 TCCTAGCAACCATGATACTGCC 59.895 50.000 0.00 0.00 35.33 4.85
4086 4328 2.292569 GCAACCATGATACTGCCTGATG 59.707 50.000 0.00 0.00 0.00 3.07
4091 4333 2.336945 TGATACTGCCTGATGCTTGG 57.663 50.000 0.00 0.00 42.00 3.61
4096 4338 2.532843 ACTGCCTGATGCTTGGATTTT 58.467 42.857 0.00 0.00 42.00 1.82
4221 4478 0.254178 GCACCACAGACATCCCAGAT 59.746 55.000 0.00 0.00 0.00 2.90
4283 4540 1.743996 GCCTCTGAATCACCTTCACC 58.256 55.000 0.00 0.00 38.97 4.02
4287 4544 3.594134 CTCTGAATCACCTTCACCTGAC 58.406 50.000 0.00 0.00 38.97 3.51
4290 4547 2.224523 TGAATCACCTTCACCTGACCAC 60.225 50.000 0.00 0.00 38.97 4.16
4295 4552 0.764890 CCTTCACCTGACCACCTTCA 59.235 55.000 0.00 0.00 0.00 3.02
4317 4574 2.472695 TCTTCCACCAGAAATCACCG 57.527 50.000 0.00 0.00 32.88 4.94
4341 4598 6.144402 CGATTGCCCATATTTCAAAAGTATGC 59.856 38.462 0.00 0.00 0.00 3.14
4344 4601 4.100808 GCCCATATTTCAAAAGTATGCCCA 59.899 41.667 0.00 0.00 0.00 5.36
4351 4608 3.631250 TCAAAAGTATGCCCATCCTTCC 58.369 45.455 0.00 0.00 0.00 3.46
4357 4614 0.554792 ATGCCCATCCTTCCTTCCTG 59.445 55.000 0.00 0.00 0.00 3.86
4358 4615 1.454663 GCCCATCCTTCCTTCCTGC 60.455 63.158 0.00 0.00 0.00 4.85
4359 4616 1.228510 CCCATCCTTCCTTCCTGCC 59.771 63.158 0.00 0.00 0.00 4.85
4360 4617 1.228510 CCATCCTTCCTTCCTGCCC 59.771 63.158 0.00 0.00 0.00 5.36
4362 4619 0.106819 CATCCTTCCTTCCTGCCCTG 60.107 60.000 0.00 0.00 0.00 4.45
4363 4620 0.551131 ATCCTTCCTTCCTGCCCTGT 60.551 55.000 0.00 0.00 0.00 4.00
4364 4621 0.118346 TCCTTCCTTCCTGCCCTGTA 59.882 55.000 0.00 0.00 0.00 2.74
4365 4622 0.543749 CCTTCCTTCCTGCCCTGTAG 59.456 60.000 0.00 0.00 0.00 2.74
4366 4623 1.280457 CTTCCTTCCTGCCCTGTAGT 58.720 55.000 0.00 0.00 0.00 2.73
4391 4648 0.179234 TTGTCGGAACTGGAGCAACA 59.821 50.000 0.00 0.00 0.00 3.33
4392 4649 0.179234 TGTCGGAACTGGAGCAACAA 59.821 50.000 0.00 0.00 0.00 2.83
4399 4656 0.532862 ACTGGAGCAACAAGACACGG 60.533 55.000 0.00 0.00 0.00 4.94
4401 4658 0.107410 TGGAGCAACAAGACACGGTT 60.107 50.000 0.00 0.00 0.00 4.44
4452 4709 1.129998 CTGATTCTGCAGGTGAAAGCG 59.870 52.381 15.13 0.00 40.95 4.68
4470 4727 1.135286 GCGCCTTTGCTTATGCTTCTT 60.135 47.619 0.00 0.00 40.48 2.52
4524 4781 1.734137 CCTACAGGTACGCGCATCT 59.266 57.895 5.73 0.00 0.00 2.90
4552 4809 8.543862 TGCTCTTGACATATATTTCTAGCATG 57.456 34.615 14.63 0.00 31.78 4.06
4574 4831 7.535258 GCATGTTACATCTGTCTAACAAACTTG 59.465 37.037 0.00 3.96 36.24 3.16
4575 4832 8.559536 CATGTTACATCTGTCTAACAAACTTGT 58.440 33.333 0.00 0.00 44.72 3.16
4591 4848 8.994429 ACAAACTTGTCAACAAATATGAAACA 57.006 26.923 0.00 0.00 36.50 2.83
4597 4854 8.854979 TTGTCAACAAATATGAAACACTCTTG 57.145 30.769 0.00 0.00 32.11 3.02
4610 4904 3.627395 CACTCTTGTGGGCATACCTTA 57.373 47.619 0.00 0.00 40.33 2.69
4616 4910 4.017958 TCTTGTGGGCATACCTTATTTCCA 60.018 41.667 0.00 0.00 41.11 3.53
4621 4915 5.830991 GTGGGCATACCTTATTTCCATGTTA 59.169 40.000 0.00 0.00 41.11 2.41
4622 4916 5.830991 TGGGCATACCTTATTTCCATGTTAC 59.169 40.000 0.00 0.00 41.11 2.50
4626 4920 7.937394 GGCATACCTTATTTCCATGTTACTACT 59.063 37.037 0.00 0.00 0.00 2.57
4629 4923 7.266905 ACCTTATTTCCATGTTACTACTGGT 57.733 36.000 0.00 0.00 0.00 4.00
4632 4926 7.280205 CCTTATTTCCATGTTACTACTGGTCAC 59.720 40.741 0.00 0.00 0.00 3.67
4658 4952 0.831966 ATGCAAGGGCTCTGAGAGAG 59.168 55.000 14.78 1.04 45.04 3.20
4697 4991 2.496297 ACCATCATGTTCCCAGAGGAT 58.504 47.619 0.00 0.00 43.54 3.24
4727 5021 5.117745 CGAAATCGATATGTAAGCCAGACTG 59.882 44.000 0.00 0.00 43.02 3.51
4864 5158 8.160106 AGTCTGGTTCAAGAAATATCTGAAACT 58.840 33.333 1.28 0.00 35.59 2.66
4980 5274 6.992063 AAGCATTTGAGAATCGACAATAGT 57.008 33.333 0.00 0.00 38.61 2.12
4983 5277 7.910304 AGCATTTGAGAATCGACAATAGTAAC 58.090 34.615 0.00 0.00 38.61 2.50
4984 5278 7.549134 AGCATTTGAGAATCGACAATAGTAACA 59.451 33.333 0.00 0.00 38.61 2.41
4985 5279 8.175069 GCATTTGAGAATCGACAATAGTAACAA 58.825 33.333 0.00 0.00 38.61 2.83
5039 5333 6.013379 AGAGTGATAATCTGGACTTGTTTCCA 60.013 38.462 0.00 0.00 43.83 3.53
5090 5398 1.123077 TGACCAGCAAGTCAGTGACT 58.877 50.000 20.34 20.34 45.64 3.41
5092 5400 2.899900 TGACCAGCAAGTCAGTGACTAT 59.100 45.455 25.71 12.34 42.59 2.12
5135 5443 4.036804 GCAACGCGCCCAACATCA 62.037 61.111 5.73 0.00 32.94 3.07
5164 5474 1.214589 GTCGACGCAGCCTAGGAAA 59.785 57.895 14.75 0.00 0.00 3.13
5212 5522 8.124199 GTGAACAAACCAATTAACGTTAGAAGA 58.876 33.333 8.23 0.00 0.00 2.87
5214 5524 9.326339 GAACAAACCAATTAACGTTAGAAGATC 57.674 33.333 8.23 0.00 0.00 2.75
5230 5540 8.955002 GTTAGAAGATCTTTTTCAAAAACCGAC 58.045 33.333 9.87 0.00 0.00 4.79
5257 5567 4.519540 TTTCAATTTAAGCCCAGCTGAC 57.480 40.909 17.39 6.97 39.62 3.51
5299 5628 8.100791 ACTAACTTATAAGGTGCATCTTCAACA 58.899 33.333 17.29 0.00 0.00 3.33
5331 5660 0.107897 TGCTCACAAACACGTCCAGT 60.108 50.000 0.00 0.00 0.00 4.00
5336 5665 2.280592 AAACACGTCCAGTCGGGC 60.281 61.111 0.00 0.00 37.80 6.13
5361 5690 2.104792 CACCGGTCATCCAACCATATCT 59.895 50.000 2.59 0.00 39.43 1.98
5386 5715 7.664552 ATCAAATGTATGTCCATTGTCCAAT 57.335 32.000 0.00 0.00 35.30 3.16
5387 5716 6.865411 TCAAATGTATGTCCATTGTCCAATG 58.135 36.000 12.10 12.10 45.77 2.82
5412 5741 4.946160 AGAGGAGAGAGAAGGAAGAGAA 57.054 45.455 0.00 0.00 0.00 2.87
5413 5742 4.860022 AGAGGAGAGAGAAGGAAGAGAAG 58.140 47.826 0.00 0.00 0.00 2.85
5414 5743 4.540099 AGAGGAGAGAGAAGGAAGAGAAGA 59.460 45.833 0.00 0.00 0.00 2.87
5415 5744 4.860022 AGGAGAGAGAAGGAAGAGAAGAG 58.140 47.826 0.00 0.00 0.00 2.85
5416 5745 4.540099 AGGAGAGAGAAGGAAGAGAAGAGA 59.460 45.833 0.00 0.00 0.00 3.10
5460 5789 1.215423 AGGTTTGAGGCAGAGTTGGTT 59.785 47.619 0.00 0.00 0.00 3.67
5466 5795 3.042560 GCAGAGTTGGTTGTGCCC 58.957 61.111 0.00 0.00 36.04 5.36
5497 5826 1.114119 CGGCTACCCTAGAACTCCCC 61.114 65.000 0.00 0.00 0.00 4.81
5526 5855 2.711009 TGAGGACTGTCTGTGGGATTTT 59.289 45.455 7.85 0.00 0.00 1.82
5539 5868 2.635427 TGGGATTTTAAACTGTTGGGCC 59.365 45.455 0.00 0.00 0.00 5.80
5584 5913 2.285024 GGCAGCCCAAAATCAGCCA 61.285 57.895 0.00 0.00 41.63 4.75
5590 5919 2.041620 AGCCCAAAATCAGCCAGTAAGA 59.958 45.455 0.00 0.00 0.00 2.10
5591 5920 2.424956 GCCCAAAATCAGCCAGTAAGAG 59.575 50.000 0.00 0.00 0.00 2.85
5592 5921 3.690460 CCCAAAATCAGCCAGTAAGAGT 58.310 45.455 0.00 0.00 0.00 3.24
5593 5922 4.843728 CCCAAAATCAGCCAGTAAGAGTA 58.156 43.478 0.00 0.00 0.00 2.59
5594 5923 5.440610 CCCAAAATCAGCCAGTAAGAGTAT 58.559 41.667 0.00 0.00 0.00 2.12
5595 5924 5.529060 CCCAAAATCAGCCAGTAAGAGTATC 59.471 44.000 0.00 0.00 0.00 2.24
5627 5956 3.721868 CCTCAGGGGGCGTCTAAA 58.278 61.111 0.00 0.00 0.00 1.85
5628 5957 1.988015 CCTCAGGGGGCGTCTAAAA 59.012 57.895 0.00 0.00 0.00 1.52
5629 5958 0.107654 CCTCAGGGGGCGTCTAAAAG 60.108 60.000 0.00 0.00 0.00 2.27
5630 5959 0.744771 CTCAGGGGGCGTCTAAAAGC 60.745 60.000 0.00 0.00 0.00 3.51
5631 5960 2.106683 CAGGGGGCGTCTAAAAGCG 61.107 63.158 0.00 0.00 0.00 4.68
5636 5965 4.516135 GCGTCTAAAAGCGCCGCC 62.516 66.667 4.98 0.00 46.93 6.13
5637 5966 2.813908 CGTCTAAAAGCGCCGCCT 60.814 61.111 4.98 0.00 0.00 5.52
5638 5967 2.785258 GTCTAAAAGCGCCGCCTG 59.215 61.111 4.98 0.00 0.00 4.85
5639 5968 2.435938 TCTAAAAGCGCCGCCTGG 60.436 61.111 4.98 0.00 38.77 4.45
5640 5969 2.435938 CTAAAAGCGCCGCCTGGA 60.436 61.111 4.98 0.00 37.49 3.86
5641 5970 2.435938 TAAAAGCGCCGCCTGGAG 60.436 61.111 4.98 0.00 37.49 3.86
5642 5971 3.969250 TAAAAGCGCCGCCTGGAGG 62.969 63.158 12.67 12.67 37.49 4.30
5657 5986 4.947147 AGGTGAGCCGGCGCAAAA 62.947 61.111 34.87 9.90 40.50 2.44
5658 5987 3.972276 GGTGAGCCGGCGCAAAAA 61.972 61.111 34.87 9.47 37.52 1.94
5743 6072 0.949397 AAAAGAAAGGACCGTTCGGC 59.051 50.000 13.57 4.36 0.00 5.54
5744 6073 1.226030 AAAGAAAGGACCGTTCGGCG 61.226 55.000 13.57 0.00 40.95 6.46
5745 6074 2.048877 GAAAGGACCGTTCGGCGA 60.049 61.111 4.99 4.99 44.77 5.54
5746 6075 1.665599 GAAAGGACCGTTCGGCGAA 60.666 57.895 19.83 19.83 44.77 4.70
5747 6076 1.623973 GAAAGGACCGTTCGGCGAAG 61.624 60.000 24.41 14.93 44.77 3.79
5748 6077 2.373434 AAAGGACCGTTCGGCGAAGT 62.373 55.000 24.41 18.34 44.77 3.01
5749 6078 2.356673 GGACCGTTCGGCGAAGTT 60.357 61.111 24.41 10.02 44.77 2.66
5750 6079 1.080569 GGACCGTTCGGCGAAGTTA 60.081 57.895 24.41 0.00 44.77 2.24
5751 6080 0.459063 GGACCGTTCGGCGAAGTTAT 60.459 55.000 24.41 8.97 44.77 1.89
5752 6081 0.643820 GACCGTTCGGCGAAGTTATG 59.356 55.000 24.41 11.83 44.77 1.90
5753 6082 0.244450 ACCGTTCGGCGAAGTTATGA 59.756 50.000 24.41 0.00 44.77 2.15
5754 6083 1.134907 ACCGTTCGGCGAAGTTATGAT 60.135 47.619 24.41 1.60 44.77 2.45
5755 6084 2.099592 ACCGTTCGGCGAAGTTATGATA 59.900 45.455 24.41 0.00 44.77 2.15
5756 6085 3.117794 CCGTTCGGCGAAGTTATGATAA 58.882 45.455 24.41 0.00 44.77 1.75
5757 6086 3.552699 CCGTTCGGCGAAGTTATGATAAA 59.447 43.478 24.41 0.00 44.77 1.40
5758 6087 4.033129 CCGTTCGGCGAAGTTATGATAAAA 59.967 41.667 24.41 0.00 44.77 1.52
5759 6088 5.446206 CCGTTCGGCGAAGTTATGATAAAAA 60.446 40.000 24.41 0.00 44.77 1.94
5760 6089 6.189567 CGTTCGGCGAAGTTATGATAAAAAT 58.810 36.000 24.41 0.00 44.77 1.82
5761 6090 6.685403 CGTTCGGCGAAGTTATGATAAAAATT 59.315 34.615 24.41 0.00 44.77 1.82
5762 6091 7.847078 CGTTCGGCGAAGTTATGATAAAAATTA 59.153 33.333 24.41 0.00 44.77 1.40
5763 6092 9.155053 GTTCGGCGAAGTTATGATAAAAATTAG 57.845 33.333 24.41 0.00 0.00 1.73
5764 6093 8.428186 TCGGCGAAGTTATGATAAAAATTAGT 57.572 30.769 7.35 0.00 0.00 2.24
5765 6094 8.885722 TCGGCGAAGTTATGATAAAAATTAGTT 58.114 29.630 7.35 0.00 0.00 2.24
5781 6110 8.664211 AAAATTAGTTAAATTTCGGCCAAACA 57.336 26.923 2.24 0.00 45.12 2.83
5782 6111 8.840833 AAATTAGTTAAATTTCGGCCAAACAT 57.159 26.923 2.24 0.00 42.88 2.71
5783 6112 7.826260 ATTAGTTAAATTTCGGCCAAACATG 57.174 32.000 2.24 0.00 0.00 3.21
5784 6113 4.565022 AGTTAAATTTCGGCCAAACATGG 58.435 39.130 2.24 0.00 0.00 3.66
5796 6125 4.587211 CCAAACATGGCAAATTTCGATG 57.413 40.909 0.00 9.43 0.00 3.84
5797 6126 4.244066 CCAAACATGGCAAATTTCGATGA 58.756 39.130 14.66 0.00 0.00 2.92
5798 6127 4.689812 CCAAACATGGCAAATTTCGATGAA 59.310 37.500 14.66 0.00 0.00 2.57
5799 6128 5.178996 CCAAACATGGCAAATTTCGATGAAA 59.821 36.000 14.66 0.00 35.94 2.69
5800 6129 6.128227 CCAAACATGGCAAATTTCGATGAAAT 60.128 34.615 14.66 0.00 43.07 2.17
5805 6134 3.301133 GGCAAATTTCGATGAAATTCGCG 60.301 43.478 17.00 0.00 46.52 5.87
5806 6135 6.776083 GGCAAATTTCGATGAAATTCGCGC 62.776 45.833 17.00 17.03 46.52 6.86
5807 6136 2.823196 ATTTCGATGAAATTCGCGCA 57.177 40.000 8.75 0.00 38.89 6.09
5808 6137 2.823196 TTTCGATGAAATTCGCGCAT 57.177 40.000 8.75 0.00 38.97 4.73
5809 6138 2.823196 TTCGATGAAATTCGCGCATT 57.177 40.000 8.75 0.00 38.97 3.56
5810 6139 2.823196 TCGATGAAATTCGCGCATTT 57.177 40.000 16.48 16.48 38.97 2.32
5811 6140 3.129852 TCGATGAAATTCGCGCATTTT 57.870 38.095 17.47 9.04 38.97 1.82
5812 6141 3.097910 TCGATGAAATTCGCGCATTTTC 58.902 40.909 17.47 16.80 38.97 2.29
5813 6142 2.845385 CGATGAAATTCGCGCATTTTCA 59.155 40.909 23.20 23.20 41.90 2.69
5815 6144 4.027458 CGATGAAATTCGCGCATTTTCATT 60.027 37.500 28.16 18.62 45.35 2.57
5816 6145 5.171159 CGATGAAATTCGCGCATTTTCATTA 59.829 36.000 28.16 12.50 45.35 1.90
5817 6146 5.678910 TGAAATTCGCGCATTTTCATTAC 57.321 34.783 17.47 4.99 35.16 1.89
5818 6147 5.157067 TGAAATTCGCGCATTTTCATTACA 58.843 33.333 17.47 7.43 35.16 2.41
5819 6148 5.804473 TGAAATTCGCGCATTTTCATTACAT 59.196 32.000 17.47 0.00 35.16 2.29
5820 6149 6.309980 TGAAATTCGCGCATTTTCATTACATT 59.690 30.769 17.47 0.00 35.16 2.71
5821 6150 7.486232 TGAAATTCGCGCATTTTCATTACATTA 59.514 29.630 17.47 0.00 35.16 1.90
5822 6151 7.748031 AATTCGCGCATTTTCATTACATTAA 57.252 28.000 8.75 0.00 0.00 1.40
5823 6152 6.547493 TTCGCGCATTTTCATTACATTAAC 57.453 33.333 8.75 0.00 0.00 2.01
5824 6153 5.031578 TCGCGCATTTTCATTACATTAACC 58.968 37.500 8.75 0.00 0.00 2.85
5825 6154 5.034152 CGCGCATTTTCATTACATTAACCT 58.966 37.500 8.75 0.00 0.00 3.50
5826 6155 6.037281 TCGCGCATTTTCATTACATTAACCTA 59.963 34.615 8.75 0.00 0.00 3.08
5827 6156 6.689241 CGCGCATTTTCATTACATTAACCTAA 59.311 34.615 8.75 0.00 0.00 2.69
5828 6157 7.378461 CGCGCATTTTCATTACATTAACCTAAT 59.622 33.333 8.75 0.00 0.00 1.73
5829 6158 8.690840 GCGCATTTTCATTACATTAACCTAATC 58.309 33.333 0.30 0.00 0.00 1.75
5830 6159 9.950680 CGCATTTTCATTACATTAACCTAATCT 57.049 29.630 0.00 0.00 0.00 2.40
5852 6181 3.838244 AAAAAGAAAGGGGTTGAAGCC 57.162 42.857 4.51 4.51 34.31 4.35
5853 6182 1.328279 AAAGAAAGGGGTTGAAGCCG 58.672 50.000 7.39 0.00 36.39 5.52
5854 6183 0.185175 AAGAAAGGGGTTGAAGCCGT 59.815 50.000 7.39 4.90 36.39 5.68
5855 6184 0.250770 AGAAAGGGGTTGAAGCCGTC 60.251 55.000 9.20 5.76 36.39 4.79
5856 6185 1.574702 GAAAGGGGTTGAAGCCGTCG 61.575 60.000 9.20 0.00 36.39 5.12
5857 6186 4.699522 AGGGGTTGAAGCCGTCGC 62.700 66.667 7.39 0.00 36.39 5.19
5868 6197 4.889856 CCGTCGCCGCCATCATCA 62.890 66.667 0.00 0.00 0.00 3.07
5869 6198 2.662857 CGTCGCCGCCATCATCAT 60.663 61.111 0.00 0.00 0.00 2.45
5870 6199 2.661566 CGTCGCCGCCATCATCATC 61.662 63.158 0.00 0.00 0.00 2.92
5871 6200 2.356194 TCGCCGCCATCATCATCG 60.356 61.111 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.118971 GCATCTTGTTGTCATTTTCTCTCTACT 59.881 37.037 0.00 0.00 0.00 2.57
1 2 7.118971 AGCATCTTGTTGTCATTTTCTCTCTAC 59.881 37.037 0.00 0.00 0.00 2.59
2 3 7.118825 CAGCATCTTGTTGTCATTTTCTCTCTA 59.881 37.037 0.00 0.00 0.00 2.43
13 14 1.971481 ACAGCAGCATCTTGTTGTCA 58.029 45.000 0.00 0.00 37.92 3.58
18 19 0.250467 ACCGAACAGCAGCATCTTGT 60.250 50.000 0.00 0.00 0.00 3.16
22 23 1.672356 ACCACCGAACAGCAGCATC 60.672 57.895 0.00 0.00 0.00 3.91
29 30 1.148310 GTCATGACACCACCGAACAG 58.852 55.000 21.07 0.00 0.00 3.16
30 31 0.756294 AGTCATGACACCACCGAACA 59.244 50.000 27.02 0.00 0.00 3.18
31 32 1.270094 TGAGTCATGACACCACCGAAC 60.270 52.381 27.02 7.58 0.00 3.95
42 43 4.681512 GCATACACCACTCATGAGTCATGA 60.682 45.833 29.85 29.39 46.84 3.07
43 44 3.558829 GCATACACCACTCATGAGTCATG 59.441 47.826 25.58 25.08 42.60 3.07
44 45 3.198417 TGCATACACCACTCATGAGTCAT 59.802 43.478 25.58 13.57 40.20 3.06
45 46 2.566724 TGCATACACCACTCATGAGTCA 59.433 45.455 25.58 14.58 40.20 3.41
46 47 2.932614 GTGCATACACCACTCATGAGTC 59.067 50.000 25.58 12.14 41.21 3.36
47 48 2.302733 TGTGCATACACCACTCATGAGT 59.697 45.455 22.89 22.89 46.86 3.41
48 49 2.976589 TGTGCATACACCACTCATGAG 58.023 47.619 21.37 21.37 46.86 2.90
70 71 8.401709 GGAATCAAAAGATAAGGTTAGCTTCAG 58.598 37.037 0.00 0.00 38.32 3.02
73 74 7.414266 AGGGAATCAAAAGATAAGGTTAGCTT 58.586 34.615 1.39 1.39 40.75 3.74
77 78 8.950007 ACAAAGGGAATCAAAAGATAAGGTTA 57.050 30.769 0.00 0.00 0.00 2.85
81 82 8.340618 TGAGACAAAGGGAATCAAAAGATAAG 57.659 34.615 0.00 0.00 0.00 1.73
105 106 0.457035 GCATACCACCACAGGCAATG 59.543 55.000 0.00 0.00 0.00 2.82
114 115 0.525311 CATTGCGTTGCATACCACCA 59.475 50.000 0.00 0.00 38.76 4.17
115 116 0.801836 GCATTGCGTTGCATACCACC 60.802 55.000 5.86 0.00 42.31 4.61
125 126 4.357142 GAATCTTGATCATGCATTGCGTT 58.643 39.130 0.00 0.00 0.00 4.84
127 128 3.004419 AGGAATCTTGATCATGCATTGCG 59.996 43.478 0.00 0.00 0.00 4.85
158 159 8.669243 CCAAAGTCTTCAAAAGTATAAGCTAGG 58.331 37.037 0.00 0.00 0.00 3.02
159 160 9.220767 ACCAAAGTCTTCAAAAGTATAAGCTAG 57.779 33.333 0.00 0.00 0.00 3.42
161 162 7.719633 TCACCAAAGTCTTCAAAAGTATAAGCT 59.280 33.333 0.00 0.00 0.00 3.74
162 163 7.803659 GTCACCAAAGTCTTCAAAAGTATAAGC 59.196 37.037 0.00 0.00 0.00 3.09
163 164 8.836413 TGTCACCAAAGTCTTCAAAAGTATAAG 58.164 33.333 0.00 0.00 0.00 1.73
164 165 8.740123 TGTCACCAAAGTCTTCAAAAGTATAA 57.260 30.769 0.00 0.00 0.00 0.98
165 166 8.783093 CATGTCACCAAAGTCTTCAAAAGTATA 58.217 33.333 0.00 0.00 0.00 1.47
166 167 7.651808 CATGTCACCAAAGTCTTCAAAAGTAT 58.348 34.615 0.00 0.00 0.00 2.12
201 202 2.319844 CCAAGCCCTGTTTCCTTCTTT 58.680 47.619 0.00 0.00 0.00 2.52
202 203 1.217942 ACCAAGCCCTGTTTCCTTCTT 59.782 47.619 0.00 0.00 0.00 2.52
216 217 0.895100 TTGGTCAGATGGCACCAAGC 60.895 55.000 2.64 0.00 45.84 4.01
267 268 4.262808 CCTCTCATCCCATGTTACCAGATC 60.263 50.000 0.00 0.00 0.00 2.75
271 272 2.845659 ACCTCTCATCCCATGTTACCA 58.154 47.619 0.00 0.00 0.00 3.25
304 307 3.453717 TGAGCTCTAGAATGCCATCAGTT 59.546 43.478 16.19 0.00 0.00 3.16
332 335 0.768221 AGGTCCAAGCAAGACTCCCA 60.768 55.000 0.00 0.00 34.56 4.37
385 396 5.586643 GGAAAAAGGATCTGCTTACCTAGTG 59.413 44.000 0.00 0.00 33.34 2.74
387 398 5.995446 AGGAAAAAGGATCTGCTTACCTAG 58.005 41.667 0.00 0.00 33.34 3.02
388 399 6.388619 AAGGAAAAAGGATCTGCTTACCTA 57.611 37.500 0.00 0.00 33.34 3.08
399 412 7.855784 AAACACTGGATTAAGGAAAAAGGAT 57.144 32.000 0.00 0.00 0.00 3.24
464 477 7.601886 AGAGAAAATACGCTGGATAATCTGATG 59.398 37.037 0.00 0.00 0.00 3.07
465 478 7.675062 AGAGAAAATACGCTGGATAATCTGAT 58.325 34.615 0.00 0.00 0.00 2.90
480 493 9.764363 AACCCAAAAGAATTCAAGAGAAAATAC 57.236 29.630 8.44 0.00 37.29 1.89
497 510 1.001181 CACTGCCCATGAACCCAAAAG 59.999 52.381 0.00 0.00 0.00 2.27
521 534 5.065090 ACACTTAACCCGTTCACAAAAGTAC 59.935 40.000 0.00 0.00 0.00 2.73
540 553 6.706270 ACTAATTTCATCGACAGTCAACACTT 59.294 34.615 0.41 0.00 0.00 3.16
570 583 4.061596 AGTAGCTTCACTTGTTCTTCAGC 58.938 43.478 0.00 0.00 0.00 4.26
607 623 9.265862 ACTAAGATCCTGAGCTGCTAATATATT 57.734 33.333 0.15 2.97 0.00 1.28
608 624 8.694540 CACTAAGATCCTGAGCTGCTAATATAT 58.305 37.037 0.15 0.00 0.00 0.86
609 625 7.363355 GCACTAAGATCCTGAGCTGCTAATATA 60.363 40.741 0.15 0.00 0.00 0.86
610 626 6.574073 GCACTAAGATCCTGAGCTGCTAATAT 60.574 42.308 0.15 0.00 0.00 1.28
611 627 5.279206 GCACTAAGATCCTGAGCTGCTAATA 60.279 44.000 0.15 0.00 0.00 0.98
612 628 4.502950 GCACTAAGATCCTGAGCTGCTAAT 60.503 45.833 0.15 0.00 0.00 1.73
614 630 2.363680 GCACTAAGATCCTGAGCTGCTA 59.636 50.000 0.15 0.00 0.00 3.49
615 631 1.138661 GCACTAAGATCCTGAGCTGCT 59.861 52.381 0.00 0.00 0.00 4.24
616 632 1.134580 TGCACTAAGATCCTGAGCTGC 60.135 52.381 0.00 0.00 0.00 5.25
617 633 2.975732 TGCACTAAGATCCTGAGCTG 57.024 50.000 0.00 0.00 0.00 4.24
623 639 2.769209 ACCTGGATGCACTAAGATCCT 58.231 47.619 0.00 0.00 39.23 3.24
632 648 0.890683 CCTGGAAAACCTGGATGCAC 59.109 55.000 0.00 0.00 0.00 4.57
642 658 1.109323 AGTGCAGCCACCTGGAAAAC 61.109 55.000 0.00 0.00 41.30 2.43
650 666 0.036875 AAGTTCCTAGTGCAGCCACC 59.963 55.000 0.00 0.00 43.09 4.61
654 672 3.126000 GTGATTCAAGTTCCTAGTGCAGC 59.874 47.826 0.00 0.00 0.00 5.25
661 679 4.245660 CTCTTGCGTGATTCAAGTTCCTA 58.754 43.478 1.61 0.00 41.13 2.94
662 680 3.070018 CTCTTGCGTGATTCAAGTTCCT 58.930 45.455 1.61 0.00 41.13 3.36
664 682 4.024893 TCAACTCTTGCGTGATTCAAGTTC 60.025 41.667 1.61 0.00 41.13 3.01
671 689 3.930336 TCATCTCAACTCTTGCGTGATT 58.070 40.909 0.00 0.00 0.00 2.57
693 711 6.264292 ACTTGCACACACCACTCAATTAAATA 59.736 34.615 0.00 0.00 0.00 1.40
698 717 2.358898 GACTTGCACACACCACTCAATT 59.641 45.455 0.00 0.00 0.00 2.32
699 718 1.949525 GACTTGCACACACCACTCAAT 59.050 47.619 0.00 0.00 0.00 2.57
703 722 0.464373 CTGGACTTGCACACACCACT 60.464 55.000 0.00 0.00 0.00 4.00
723 778 6.494893 TGGATTTTAAACCAAGTGAGATCG 57.505 37.500 0.00 0.00 32.93 3.69
727 782 6.840780 AGGATGGATTTTAAACCAAGTGAG 57.159 37.500 1.97 0.00 39.69 3.51
742 797 7.234782 TCGGTATACAATCAAACTAGGATGGAT 59.765 37.037 5.01 0.00 0.00 3.41
765 820 7.119605 TGCTCATCAAAAATTCAAAATTCGG 57.880 32.000 0.00 0.00 0.00 4.30
783 838 4.589908 ACCCGTTCTAGAAAATTGCTCAT 58.410 39.130 6.78 0.00 0.00 2.90
784 839 4.000988 GACCCGTTCTAGAAAATTGCTCA 58.999 43.478 6.78 0.00 0.00 4.26
785 840 4.000988 TGACCCGTTCTAGAAAATTGCTC 58.999 43.478 6.78 0.00 0.00 4.26
817 873 4.025401 GCAAACACGTCGGCCAGG 62.025 66.667 2.24 0.00 0.00 4.45
819 875 2.593148 ATGCAAACACGTCGGCCA 60.593 55.556 2.24 0.00 0.00 5.36
820 876 2.175811 GATGCAAACACGTCGGCC 59.824 61.111 0.00 0.00 0.00 6.13
823 879 1.434555 TTAGGGATGCAAACACGTCG 58.565 50.000 0.00 0.00 0.00 5.12
828 884 7.471260 GCATATGGTTAATTAGGGATGCAAACA 60.471 37.037 4.56 0.00 38.60 2.83
829 885 6.868339 GCATATGGTTAATTAGGGATGCAAAC 59.132 38.462 4.56 0.00 38.60 2.93
837 893 6.484288 TCAGGATGCATATGGTTAATTAGGG 58.516 40.000 0.00 0.00 34.76 3.53
840 896 8.938801 AACATCAGGATGCATATGGTTAATTA 57.061 30.769 9.12 0.00 42.39 1.40
841 897 7.844493 AACATCAGGATGCATATGGTTAATT 57.156 32.000 9.12 0.00 42.39 1.40
842 898 7.308770 CGAAACATCAGGATGCATATGGTTAAT 60.309 37.037 9.84 0.00 42.39 1.40
843 899 6.017192 CGAAACATCAGGATGCATATGGTTAA 60.017 38.462 9.84 0.00 42.39 2.01
855 911 2.169352 CCCTCACTCGAAACATCAGGAT 59.831 50.000 0.00 0.00 0.00 3.24
876 932 4.608882 CGCTGACGAAAGAAAAATGAGAAC 59.391 41.667 0.00 0.00 43.93 3.01
890 948 1.227342 TTGCTGATTGCGCTGACGAA 61.227 50.000 9.73 0.00 46.63 3.85
892 950 1.225936 CTTGCTGATTGCGCTGACG 60.226 57.895 9.73 0.00 46.63 4.35
906 964 7.483307 TGCCAAGATCAAGTATATTTTCTTGC 58.517 34.615 13.20 10.54 38.99 4.01
907 965 9.459640 CATGCCAAGATCAAGTATATTTTCTTG 57.540 33.333 12.27 12.27 41.36 3.02
935 998 4.082625 TCTGCAGTGAGGCAAATATGTTTG 60.083 41.667 14.67 10.34 44.40 2.93
936 999 4.081406 TCTGCAGTGAGGCAAATATGTTT 58.919 39.130 14.67 0.00 44.40 2.83
950 1013 2.012673 GGCTAACCTGAATCTGCAGTG 58.987 52.381 14.67 0.41 34.06 3.66
952 1015 1.065199 TGGGCTAACCTGAATCTGCAG 60.065 52.381 7.63 7.63 41.11 4.41
977 1043 3.511934 GTCTGACAATAGGGAGACAGTGT 59.488 47.826 2.24 0.00 35.82 3.55
978 1044 3.511540 TGTCTGACAATAGGGAGACAGTG 59.488 47.826 8.27 0.00 39.86 3.66
1011 1077 3.194005 TCTTTCTTCAAAGCAGACCGT 57.806 42.857 0.00 0.00 39.23 4.83
1013 1079 5.923114 GGATTTTCTTTCTTCAAAGCAGACC 59.077 40.000 0.00 0.00 39.23 3.85
1023 1089 5.447624 TTCCCAACGGATTTTCTTTCTTC 57.552 39.130 0.00 0.00 38.24 2.87
1052 1118 8.302965 CGAAGCATATTCTTCAGATGACATTA 57.697 34.615 14.27 0.00 41.84 1.90
1094 1160 4.016444 GCTTGGGACATTGGTGAATTCTA 58.984 43.478 7.05 0.00 39.30 2.10
1172 1238 5.352284 AGATGATGATTGTGAACGAGGTAC 58.648 41.667 0.00 0.00 0.00 3.34
1205 1275 5.279859 CCAGCTTTGATATAGCTCCTGATCA 60.280 44.000 0.00 0.00 45.52 2.92
1208 1278 3.969976 ACCAGCTTTGATATAGCTCCTGA 59.030 43.478 0.00 0.00 45.52 3.86
1223 1293 9.515226 TGAGTAACATTTTAATTAGACCAGCTT 57.485 29.630 0.00 0.00 0.00 3.74
1240 1310 8.565896 TTCTGCAATAATGAAGTGAGTAACAT 57.434 30.769 0.00 0.00 33.47 2.71
1241 1311 7.877612 TCTTCTGCAATAATGAAGTGAGTAACA 59.122 33.333 11.19 0.00 38.52 2.41
1245 1315 6.233434 TGTCTTCTGCAATAATGAAGTGAGT 58.767 36.000 11.19 0.00 38.52 3.41
1280 1350 3.065371 CCGGCTGACTAATGGAAAACATC 59.935 47.826 0.00 0.00 39.40 3.06
1310 1380 7.865706 AATATATTTCCTCTTGTTGTTCGCT 57.134 32.000 0.00 0.00 0.00 4.93
1343 1413 3.244249 TGGTTCCACGTGTCACAATATGA 60.244 43.478 15.65 0.00 33.79 2.15
1357 1427 0.460987 CTCGAGAGGCATGGTTCCAC 60.461 60.000 6.58 0.00 0.00 4.02
1435 1505 1.157585 GAGAAGCTTTGACCCCGAAC 58.842 55.000 0.00 0.00 0.00 3.95
1478 1548 2.963498 TCTGAAGTGTCGTACGTGAG 57.037 50.000 16.05 0.00 0.00 3.51
1481 1551 3.637998 ACAATCTGAAGTGTCGTACGT 57.362 42.857 16.05 0.00 0.00 3.57
1505 1575 4.582869 TCTCTTTCTCCACATGTGATTGG 58.417 43.478 27.46 10.65 0.00 3.16
1537 1607 1.131638 TGGACCATGGATAGCCTGAC 58.868 55.000 21.47 0.00 34.31 3.51
1542 1612 5.246307 GGTATAAAGTGGACCATGGATAGC 58.754 45.833 21.47 8.90 33.16 2.97
1606 1676 9.488762 TGTTACATATATATAGGGGTGAAGAGG 57.511 37.037 9.10 0.00 0.00 3.69
1647 1720 3.241067 TGAAACCTGCAGTATACCGAC 57.759 47.619 13.81 0.00 0.00 4.79
1648 1721 3.369052 CCTTGAAACCTGCAGTATACCGA 60.369 47.826 13.81 0.00 0.00 4.69
1649 1722 2.936498 CCTTGAAACCTGCAGTATACCG 59.064 50.000 13.81 0.00 0.00 4.02
1650 1723 3.054655 TCCCTTGAAACCTGCAGTATACC 60.055 47.826 13.81 0.00 0.00 2.73
1651 1724 4.216411 TCCCTTGAAACCTGCAGTATAC 57.784 45.455 13.81 0.00 0.00 1.47
1653 1726 4.322057 AATCCCTTGAAACCTGCAGTAT 57.678 40.909 13.81 0.00 0.00 2.12
1704 1779 1.447140 TGGCTGTTCGGCGATGTAC 60.447 57.895 11.76 6.87 42.02 2.90
1713 1788 0.817634 TTGGTTGAGGTGGCTGTTCG 60.818 55.000 0.00 0.00 0.00 3.95
1737 1812 0.886490 ATCCGGCATCATCGAAAGCC 60.886 55.000 0.00 9.83 43.61 4.35
1746 1821 3.904800 TCTTTTCTGTATCCGGCATCA 57.095 42.857 0.00 0.00 0.00 3.07
1794 1869 1.635487 CAATCCCCTTGTCCTCTCCAA 59.365 52.381 0.00 0.00 0.00 3.53
1806 1881 0.423544 AGTCCTCTTCCCAATCCCCT 59.576 55.000 0.00 0.00 0.00 4.79
1880 1955 4.079443 AGGTGTGCTAAGAGAGAGACCTAT 60.079 45.833 0.00 0.00 31.49 2.57
1910 2000 3.872511 TGCTGTTGCATTAAGGATTGG 57.127 42.857 0.00 0.00 45.31 3.16
1922 2012 3.501950 GTTTAGTAAGCCATGCTGTTGC 58.498 45.455 0.00 0.00 39.62 4.17
1929 2019 4.158394 ACATGCTTGGTTTAGTAAGCCATG 59.842 41.667 18.03 19.56 46.59 3.66
1959 2049 4.795635 GCACACACCAAAGCACATCAATTA 60.796 41.667 0.00 0.00 0.00 1.40
1960 2050 3.719924 CACACACCAAAGCACATCAATT 58.280 40.909 0.00 0.00 0.00 2.32
1961 2051 2.546373 GCACACACCAAAGCACATCAAT 60.546 45.455 0.00 0.00 0.00 2.57
1962 2052 1.202394 GCACACACCAAAGCACATCAA 60.202 47.619 0.00 0.00 0.00 2.57
1963 2053 0.385029 GCACACACCAAAGCACATCA 59.615 50.000 0.00 0.00 0.00 3.07
1964 2054 0.385029 TGCACACACCAAAGCACATC 59.615 50.000 0.00 0.00 31.05 3.06
1965 2055 0.386476 CTGCACACACCAAAGCACAT 59.614 50.000 0.00 0.00 32.87 3.21
1966 2056 0.964860 ACTGCACACACCAAAGCACA 60.965 50.000 0.00 0.00 32.87 4.57
1967 2057 0.526096 CACTGCACACACCAAAGCAC 60.526 55.000 0.00 0.00 32.87 4.40
1968 2058 1.665264 CCACTGCACACACCAAAGCA 61.665 55.000 0.00 0.00 35.43 3.91
1969 2059 1.066257 CCACTGCACACACCAAAGC 59.934 57.895 0.00 0.00 0.00 3.51
1978 2068 1.037493 ACGTACTTCTCCACTGCACA 58.963 50.000 0.00 0.00 0.00 4.57
1979 2069 1.419374 CACGTACTTCTCCACTGCAC 58.581 55.000 0.00 0.00 0.00 4.57
2000 2090 3.921677 TGGTTTTGTAACTCCTCTAGCG 58.078 45.455 0.00 0.00 34.59 4.26
2009 2099 4.037923 CCAGCACTCATTGGTTTTGTAACT 59.962 41.667 0.00 0.00 31.87 2.24
2019 2109 1.901591 ACTTGACCAGCACTCATTGG 58.098 50.000 0.00 0.00 40.38 3.16
2029 2119 1.338020 GAGCCCAAACAACTTGACCAG 59.662 52.381 0.00 0.00 37.17 4.00
2063 2153 0.602562 CCAAAAGCTTTCGATGGCCA 59.397 50.000 13.10 8.56 0.00 5.36
2071 2161 2.459934 CCACGAACACCAAAAGCTTTC 58.540 47.619 13.10 0.00 0.00 2.62
2084 2174 2.740447 GTGTTCTAACCATCCCACGAAC 59.260 50.000 0.00 0.00 33.34 3.95
2171 2261 5.976458 TCAAAAGGGGAATGAATTGCATAC 58.024 37.500 0.00 0.00 35.78 2.39
2205 2295 0.870307 ACAGACGCGTTATCGGCATC 60.870 55.000 15.53 0.00 40.62 3.91
2222 2312 4.402851 GCATGAGCTCACCCAACA 57.597 55.556 20.97 0.00 37.91 3.33
2250 2340 4.324267 AGTACGCAGGTGCTCTAAAAATT 58.676 39.130 0.00 0.00 33.48 1.82
2252 2342 3.396260 AGTACGCAGGTGCTCTAAAAA 57.604 42.857 0.00 0.00 33.48 1.94
2261 2351 3.128349 ACAAAACAGTAGTACGCAGGTG 58.872 45.455 0.00 0.00 0.00 4.00
2263 2353 3.805422 TGAACAAAACAGTAGTACGCAGG 59.195 43.478 0.00 0.00 0.00 4.85
2268 2358 7.860872 CCTTCCATTTGAACAAAACAGTAGTAC 59.139 37.037 4.12 0.00 33.56 2.73
2332 2426 2.270352 TGGAAGAACCAAAGCGATGT 57.730 45.000 0.00 0.00 46.75 3.06
2342 2436 2.633481 ACTCACTACCACTGGAAGAACC 59.367 50.000 0.71 0.00 37.43 3.62
2444 2538 7.020914 CCTTCAATAAGGTGCAAGAGTATTC 57.979 40.000 0.00 0.00 46.34 1.75
2467 2564 2.287103 GGAACGTATCGGCTTGAAATCC 59.713 50.000 0.00 0.00 0.00 3.01
2476 2579 1.935933 ATTCAGTGGAACGTATCGGC 58.064 50.000 0.00 0.00 45.86 5.54
2545 2664 3.398954 TCAACTGCACGTTTTGAAGAC 57.601 42.857 0.00 0.00 33.82 3.01
2551 2670 3.472652 TCCACTATCAACTGCACGTTTT 58.527 40.909 0.00 0.00 32.27 2.43
2600 2719 0.173481 TCAGAAGGCCAGTCGATTCG 59.827 55.000 5.01 0.00 0.00 3.34
2606 2725 2.496899 TTCCAATCAGAAGGCCAGTC 57.503 50.000 5.01 0.93 0.00 3.51
2685 2804 3.791539 GAGCGCAGATCACAGTGG 58.208 61.111 11.47 0.00 45.47 4.00
2810 2940 3.362986 GCAGATGTTAATACCATCGTGCG 60.363 47.826 6.52 0.00 42.78 5.34
2894 3032 4.080356 AGTGATCCTTTAAGGTGCATGCTA 60.080 41.667 20.33 2.15 36.53 3.49
2895 3033 3.019564 GTGATCCTTTAAGGTGCATGCT 58.980 45.455 20.33 0.00 36.53 3.79
2937 3089 1.047002 CCCACTGCCAAATGAAACCA 58.953 50.000 0.00 0.00 0.00 3.67
2938 3090 0.321346 CCCCACTGCCAAATGAAACC 59.679 55.000 0.00 0.00 0.00 3.27
2978 3130 4.679372 GCTCCATGAGTAACCTGAGTCTTC 60.679 50.000 0.00 0.00 31.39 2.87
2988 3140 0.107654 AAGGGCGCTCCATGAGTAAC 60.108 55.000 2.00 0.00 38.24 2.50
3015 3167 2.619849 CCAGAGAGGACATTGTTGCCAT 60.620 50.000 0.00 0.00 41.22 4.40
3041 3193 2.286872 CTGCCTCTGATTGCAAGTAGG 58.713 52.381 4.94 9.74 36.98 3.18
3050 3202 3.276857 CATAAGCACACTGCCTCTGATT 58.723 45.455 0.00 0.00 46.52 2.57
3087 3239 8.608844 AGAGGCATATATTGTTAGCACTAAAC 57.391 34.615 0.00 0.00 0.00 2.01
3097 3250 6.529220 GGTCAGAAGAGAGGCATATATTGTT 58.471 40.000 0.00 0.00 0.00 2.83
3108 3261 1.403679 CTAGCACGGTCAGAAGAGAGG 59.596 57.143 0.00 0.00 0.00 3.69
3109 3262 2.088423 ACTAGCACGGTCAGAAGAGAG 58.912 52.381 0.00 0.00 0.00 3.20
3124 3277 1.139947 GGGACTGCTCGACACTAGC 59.860 63.158 0.00 0.00 40.50 3.42
3136 3291 1.381872 AGGAGGGTCGATGGGACTG 60.382 63.158 0.00 0.00 45.35 3.51
3160 3315 2.279517 GCTCGACGGCCATACCTG 60.280 66.667 2.24 0.00 35.61 4.00
3195 3353 2.125673 AGACCCATGCGCGTGTAC 60.126 61.111 26.86 17.03 0.00 2.90
3205 3366 1.553704 GTAACTTCGTCCCAGACCCAT 59.446 52.381 0.00 0.00 0.00 4.00
3211 3372 0.458025 GGCTCGTAACTTCGTCCCAG 60.458 60.000 0.00 0.00 0.00 4.45
3229 3390 2.449031 TACTGGCTGCTGTCAACGGG 62.449 60.000 0.00 0.00 0.00 5.28
3263 3424 8.462143 TTCTACTTAGAAATTTACAGCAGTCG 57.538 34.615 0.00 0.00 39.22 4.18
3348 3515 8.579850 TTGTGATGAGATAACAAAGCCTTTAT 57.420 30.769 0.00 0.00 30.70 1.40
3402 3569 2.836981 CAGAGAGTTCATCAGAGGGGTT 59.163 50.000 0.00 0.00 0.00 4.11
3475 3676 9.877178 GGTACATATAATCTAGTGAAGGATTGG 57.123 37.037 0.00 0.00 34.52 3.16
3495 3698 5.131142 CACCTGAGGATAGGAAAAGGTACAT 59.869 44.000 4.99 0.00 40.42 2.29
3497 3700 4.141688 CCACCTGAGGATAGGAAAAGGTAC 60.142 50.000 4.99 0.00 40.42 3.34
3501 3704 3.430929 CGACCACCTGAGGATAGGAAAAG 60.431 52.174 4.99 0.00 40.42 2.27
3635 3838 0.042448 GTGACACAAGAAACGCCGAC 60.042 55.000 0.00 0.00 0.00 4.79
3647 3850 3.283751 CAGGTTAAACCCAAGTGACACA 58.716 45.455 8.59 0.00 39.75 3.72
3649 3852 2.092103 AGCAGGTTAAACCCAAGTGACA 60.092 45.455 0.00 0.00 39.75 3.58
3692 3895 9.850628 CAGAATTGCAGAGAATTTCAAGATAAA 57.149 29.630 0.00 0.00 0.00 1.40
3693 3896 9.234827 TCAGAATTGCAGAGAATTTCAAGATAA 57.765 29.630 0.00 0.00 0.00 1.75
3694 3897 8.797350 TCAGAATTGCAGAGAATTTCAAGATA 57.203 30.769 0.00 0.00 0.00 1.98
3695 3898 7.698506 TCAGAATTGCAGAGAATTTCAAGAT 57.301 32.000 0.00 0.00 0.00 2.40
3697 3900 9.850628 TTTATCAGAATTGCAGAGAATTTCAAG 57.149 29.630 0.00 0.00 0.00 3.02
3719 3932 8.912988 CACTAACACCCATTGGTCATTATTTAT 58.087 33.333 1.20 0.00 45.57 1.40
3725 3938 3.826157 CACACTAACACCCATTGGTCATT 59.174 43.478 1.20 0.00 45.57 2.57
3800 4013 1.043673 CCTCCTCTCCGTAACCCAGG 61.044 65.000 0.00 0.00 0.00 4.45
3884 4105 7.496529 TTTGTTAACAATGAGAGAGGACAAG 57.503 36.000 21.17 0.00 35.55 3.16
3922 4143 4.927049 ACAATCTTGGACATCCTGTTCAT 58.073 39.130 0.00 0.00 35.46 2.57
3950 4181 1.545841 TGATCACGTGGTCTAGTGCT 58.454 50.000 27.93 0.00 38.19 4.40
4001 4232 1.215647 GTGCGAGATCCCGACAACT 59.784 57.895 0.00 0.00 0.00 3.16
4022 4253 1.247567 AATGGGTTGTCAAGAAGCCG 58.752 50.000 3.99 0.00 44.98 5.52
4057 4288 4.503817 GCAGTATCATGGTTGCTAGGATGA 60.504 45.833 0.00 0.00 33.88 2.92
4113 4355 7.710907 GCCTGGAGAAAAAGTGAAAAATTAAGT 59.289 33.333 0.00 0.00 0.00 2.24
4122 4379 2.443255 AGGAGCCTGGAGAAAAAGTGAA 59.557 45.455 0.00 0.00 0.00 3.18
4130 4387 0.707024 TCTCTCAGGAGCCTGGAGAA 59.293 55.000 23.61 13.84 42.09 2.87
4283 4540 3.503748 GTGGAAGATTTGAAGGTGGTCAG 59.496 47.826 0.00 0.00 0.00 3.51
4287 4544 2.821969 CTGGTGGAAGATTTGAAGGTGG 59.178 50.000 0.00 0.00 0.00 4.61
4290 4547 5.477984 TGATTTCTGGTGGAAGATTTGAAGG 59.522 40.000 0.00 0.00 35.16 3.46
4295 4552 3.758554 CGGTGATTTCTGGTGGAAGATTT 59.241 43.478 0.00 0.00 35.16 2.17
4317 4574 6.424812 GGCATACTTTTGAAATATGGGCAATC 59.575 38.462 1.97 0.00 0.00 2.67
4341 4598 1.228510 GGCAGGAAGGAAGGATGGG 59.771 63.158 0.00 0.00 0.00 4.00
4344 4601 0.551131 ACAGGGCAGGAAGGAAGGAT 60.551 55.000 0.00 0.00 0.00 3.24
4351 4608 2.567615 ACTACAACTACAGGGCAGGAAG 59.432 50.000 0.00 0.00 0.00 3.46
4357 4614 2.334838 CGACAACTACAACTACAGGGC 58.665 52.381 0.00 0.00 0.00 5.19
4358 4615 2.559668 TCCGACAACTACAACTACAGGG 59.440 50.000 0.00 0.00 0.00 4.45
4359 4616 3.928727 TCCGACAACTACAACTACAGG 57.071 47.619 0.00 0.00 0.00 4.00
4360 4617 4.680110 CAGTTCCGACAACTACAACTACAG 59.320 45.833 0.00 0.00 0.00 2.74
4362 4619 3.985925 CCAGTTCCGACAACTACAACTAC 59.014 47.826 0.00 0.00 0.00 2.73
4363 4620 3.890756 TCCAGTTCCGACAACTACAACTA 59.109 43.478 0.00 0.00 0.00 2.24
4364 4621 2.696707 TCCAGTTCCGACAACTACAACT 59.303 45.455 0.00 0.00 0.00 3.16
4365 4622 3.057734 CTCCAGTTCCGACAACTACAAC 58.942 50.000 0.00 0.00 0.00 3.32
4366 4623 2.547218 GCTCCAGTTCCGACAACTACAA 60.547 50.000 0.00 0.00 0.00 2.41
4391 4648 6.238814 CCCTAACATGTTTTTAACCGTGTCTT 60.239 38.462 17.78 0.00 31.53 3.01
4392 4649 5.239963 CCCTAACATGTTTTTAACCGTGTCT 59.760 40.000 17.78 0.00 31.53 3.41
4399 4656 8.558700 TCGAGTTTACCCTAACATGTTTTTAAC 58.441 33.333 17.78 12.07 0.00 2.01
4401 4658 8.851541 ATCGAGTTTACCCTAACATGTTTTTA 57.148 30.769 17.78 0.00 0.00 1.52
4452 4709 2.493278 TCCAAGAAGCATAAGCAAAGGC 59.507 45.455 0.00 0.00 45.49 4.35
4495 4752 0.034089 ACCTGTAGGCCATTGGAAGC 60.034 55.000 5.01 0.00 39.32 3.86
4496 4753 2.741878 CGTACCTGTAGGCCATTGGAAG 60.742 54.545 5.01 0.00 39.32 3.46
4497 4754 1.208535 CGTACCTGTAGGCCATTGGAA 59.791 52.381 5.01 0.00 39.32 3.53
4552 4809 8.138365 TGACAAGTTTGTTAGACAGATGTAAC 57.862 34.615 0.00 0.00 42.43 2.50
4561 4818 9.944663 TCATATTTGTTGACAAGTTTGTTAGAC 57.055 29.630 0.00 0.43 42.43 2.59
4574 4831 7.379529 CCACAAGAGTGTTTCATATTTGTTGAC 59.620 37.037 0.00 0.00 44.39 3.18
4575 4832 7.424803 CCACAAGAGTGTTTCATATTTGTTGA 58.575 34.615 0.00 0.00 44.39 3.18
4591 4848 4.862641 AATAAGGTATGCCCACAAGAGT 57.137 40.909 0.00 0.00 34.66 3.24
4597 4854 4.215109 ACATGGAAATAAGGTATGCCCAC 58.785 43.478 0.00 0.00 34.66 4.61
4600 4857 7.937394 AGTAGTAACATGGAAATAAGGTATGCC 59.063 37.037 0.00 0.00 0.00 4.40
4601 4858 8.774586 CAGTAGTAACATGGAAATAAGGTATGC 58.225 37.037 0.00 0.00 0.00 3.14
4602 4859 9.273016 CCAGTAGTAACATGGAAATAAGGTATG 57.727 37.037 0.00 0.00 36.09 2.39
4610 4904 6.374417 AGTGACCAGTAGTAACATGGAAAT 57.626 37.500 0.00 0.00 37.54 2.17
4616 4910 7.548097 CATACTGAAGTGACCAGTAGTAACAT 58.452 38.462 7.56 0.00 46.43 2.71
4621 4915 3.832490 TGCATACTGAAGTGACCAGTAGT 59.168 43.478 7.56 0.00 46.43 2.73
4622 4916 4.456280 TGCATACTGAAGTGACCAGTAG 57.544 45.455 7.56 2.75 46.43 2.57
4626 4920 2.290260 CCCTTGCATACTGAAGTGACCA 60.290 50.000 0.00 0.00 0.00 4.02
4629 4923 1.630369 AGCCCTTGCATACTGAAGTGA 59.370 47.619 0.00 0.00 41.13 3.41
4632 4926 2.093288 TCAGAGCCCTTGCATACTGAAG 60.093 50.000 0.00 0.00 39.51 3.02
4658 4952 0.608640 TTTTGACCTCGCCTCCTCTC 59.391 55.000 0.00 0.00 0.00 3.20
4697 4991 4.380678 GCTTACATATCGATTTCGTGCGTA 59.619 41.667 1.71 0.00 40.80 4.42
4727 5021 3.941704 AATGAGAGGGGGAATCAGTTC 57.058 47.619 0.00 0.00 0.00 3.01
4864 5158 3.026694 TCGAAATCTCTGGCTCAGATCA 58.973 45.455 5.50 0.00 39.92 2.92
4992 5286 8.646900 ACTCTCTTTAGGCTCATTATTTAGGAG 58.353 37.037 0.00 0.00 0.00 3.69
5097 5405 2.724690 CGTACGGTCACTTGTTGAGAAG 59.275 50.000 7.57 0.00 33.71 2.85
5098 5406 2.734670 CGTACGGTCACTTGTTGAGAA 58.265 47.619 7.57 0.00 33.71 2.87
5099 5407 1.601162 GCGTACGGTCACTTGTTGAGA 60.601 52.381 18.39 0.00 33.71 3.27
5100 5408 0.782384 GCGTACGGTCACTTGTTGAG 59.218 55.000 18.39 0.00 33.71 3.02
5101 5409 0.102663 TGCGTACGGTCACTTGTTGA 59.897 50.000 18.39 0.00 0.00 3.18
5135 5443 1.402259 CTGCGTCGACCAAGATAGACT 59.598 52.381 10.58 0.00 0.00 3.24
5164 5474 5.297776 CACAAACAGAATTCAGTCTCACCTT 59.702 40.000 8.44 0.00 0.00 3.50
5204 5514 8.955002 GTCGGTTTTTGAAAAAGATCTTCTAAC 58.045 33.333 8.78 5.77 0.00 2.34
5205 5515 7.853929 CGTCGGTTTTTGAAAAAGATCTTCTAA 59.146 33.333 8.78 0.00 0.00 2.10
5212 5522 4.142337 ACACCGTCGGTTTTTGAAAAAGAT 60.142 37.500 15.97 0.00 31.02 2.40
5214 5524 3.503891 ACACCGTCGGTTTTTGAAAAAG 58.496 40.909 15.97 1.53 31.02 2.27
5230 5540 3.983741 TGGGCTTAAATTGAAAACACCG 58.016 40.909 0.00 0.00 0.00 4.94
5274 5584 8.391106 GTGTTGAAGATGCACCTTATAAGTTAG 58.609 37.037 11.50 2.31 0.00 2.34
5336 5665 2.358125 TTGGATGACCGGTGCACG 60.358 61.111 14.63 6.23 43.80 5.34
5338 5667 2.033448 GGTTGGATGACCGGTGCA 59.967 61.111 14.63 10.89 39.42 4.57
5342 5671 4.222810 TGATAGATATGGTTGGATGACCGG 59.777 45.833 0.00 0.00 42.83 5.28
5361 5690 8.631797 CATTGGACAATGGACATACATTTGATA 58.368 33.333 15.46 0.00 43.25 2.15
5386 5715 4.729370 TCTTCCTTCTCTCTCCTCTATCCA 59.271 45.833 0.00 0.00 0.00 3.41
5387 5716 5.073144 TCTCTTCCTTCTCTCTCCTCTATCC 59.927 48.000 0.00 0.00 0.00 2.59
5390 5719 5.729229 TCTTCTCTTCCTTCTCTCTCCTCTA 59.271 44.000 0.00 0.00 0.00 2.43
5412 5741 4.079730 ACAAACCCAGTTTTTCCTCTCTCT 60.080 41.667 0.00 0.00 33.10 3.10
5413 5742 4.036852 CACAAACCCAGTTTTTCCTCTCTC 59.963 45.833 0.00 0.00 33.10 3.20
5414 5743 3.954258 CACAAACCCAGTTTTTCCTCTCT 59.046 43.478 0.00 0.00 33.10 3.10
5415 5744 3.068165 CCACAAACCCAGTTTTTCCTCTC 59.932 47.826 0.00 0.00 33.10 3.20
5416 5745 3.031013 CCACAAACCCAGTTTTTCCTCT 58.969 45.455 0.00 0.00 33.10 3.69
5474 5803 0.106116 AGTTCTAGGGTAGCCGGGAG 60.106 60.000 2.18 4.84 0.00 4.30
5480 5809 0.265254 AGGGGGAGTTCTAGGGTAGC 59.735 60.000 0.00 0.00 0.00 3.58
5483 5812 0.340208 CTCAGGGGGAGTTCTAGGGT 59.660 60.000 0.00 0.00 38.90 4.34
5497 5826 2.366916 ACAGACAGTCCTCAAACTCAGG 59.633 50.000 0.00 0.00 0.00 3.86
5526 5855 1.989706 GGACTTGGCCCAACAGTTTA 58.010 50.000 0.00 0.00 0.00 2.01
5539 5868 1.699634 TCTTCCTTGTGGAGGGACTTG 59.300 52.381 0.00 0.00 46.31 3.16
5559 5888 1.002315 GATTTTGGGCTGCCAACACAT 59.998 47.619 22.05 5.17 0.00 3.21
5584 5913 3.300239 ACGGCTGGAGATACTCTTACT 57.700 47.619 0.00 0.00 0.00 2.24
5610 5939 0.107654 CTTTTAGACGCCCCCTGAGG 60.108 60.000 0.00 0.00 0.00 3.86
5611 5940 0.744771 GCTTTTAGACGCCCCCTGAG 60.745 60.000 0.00 0.00 0.00 3.35
5612 5941 1.298667 GCTTTTAGACGCCCCCTGA 59.701 57.895 0.00 0.00 0.00 3.86
5613 5942 2.106683 CGCTTTTAGACGCCCCCTG 61.107 63.158 0.00 0.00 0.00 4.45
5614 5943 2.267961 CGCTTTTAGACGCCCCCT 59.732 61.111 0.00 0.00 0.00 4.79
5620 5949 2.813908 AGGCGGCGCTTTTAGACG 60.814 61.111 32.30 0.56 0.00 4.18
5621 5950 2.750888 CCAGGCGGCGCTTTTAGAC 61.751 63.158 32.30 13.09 0.00 2.59
5622 5951 2.435938 CCAGGCGGCGCTTTTAGA 60.436 61.111 32.30 0.00 0.00 2.10
5623 5952 2.435938 TCCAGGCGGCGCTTTTAG 60.436 61.111 32.30 15.11 0.00 1.85
5624 5953 2.435938 CTCCAGGCGGCGCTTTTA 60.436 61.111 32.30 13.25 0.00 1.52
5640 5969 4.947147 TTTTGCGCCGGCTCACCT 62.947 61.111 26.68 0.00 40.82 4.00
5641 5970 3.972276 TTTTTGCGCCGGCTCACC 61.972 61.111 26.68 10.54 40.82 4.02
5723 6052 1.335810 GCCGAACGGTCCTTTCTTTTT 59.664 47.619 14.63 0.00 37.65 1.94
5724 6053 0.949397 GCCGAACGGTCCTTTCTTTT 59.051 50.000 14.63 0.00 37.65 2.27
5725 6054 1.226030 CGCCGAACGGTCCTTTCTTT 61.226 55.000 14.63 0.00 38.44 2.52
5726 6055 1.666872 CGCCGAACGGTCCTTTCTT 60.667 57.895 14.63 0.00 38.44 2.52
5727 6056 2.048503 CGCCGAACGGTCCTTTCT 60.049 61.111 14.63 0.00 38.44 2.52
5728 6057 1.623973 CTTCGCCGAACGGTCCTTTC 61.624 60.000 14.63 0.00 43.89 2.62
5729 6058 1.666872 CTTCGCCGAACGGTCCTTT 60.667 57.895 14.63 0.00 43.89 3.11
5730 6059 2.048503 CTTCGCCGAACGGTCCTT 60.049 61.111 14.63 0.00 43.89 3.36
5731 6060 1.526575 TAACTTCGCCGAACGGTCCT 61.527 55.000 14.63 0.00 43.89 3.85
5732 6061 0.459063 ATAACTTCGCCGAACGGTCC 60.459 55.000 14.63 0.00 43.89 4.46
5733 6062 0.643820 CATAACTTCGCCGAACGGTC 59.356 55.000 14.63 0.00 43.89 4.79
5734 6063 0.244450 TCATAACTTCGCCGAACGGT 59.756 50.000 14.63 0.00 43.89 4.83
5735 6064 1.567504 ATCATAACTTCGCCGAACGG 58.432 50.000 9.00 9.00 43.89 4.44
5736 6065 4.765281 TTTATCATAACTTCGCCGAACG 57.235 40.909 0.00 0.00 45.62 3.95
5737 6066 7.964545 AATTTTTATCATAACTTCGCCGAAC 57.035 32.000 0.00 0.00 0.00 3.95
5738 6067 8.885722 ACTAATTTTTATCATAACTTCGCCGAA 58.114 29.630 0.00 0.00 0.00 4.30
5739 6068 8.428186 ACTAATTTTTATCATAACTTCGCCGA 57.572 30.769 0.00 0.00 0.00 5.54
5755 6084 9.110502 TGTTTGGCCGAAATTTAACTAATTTTT 57.889 25.926 7.10 0.00 44.46 1.94
5756 6085 8.664211 TGTTTGGCCGAAATTTAACTAATTTT 57.336 26.923 7.10 0.00 44.46 1.82
5757 6086 8.716909 CATGTTTGGCCGAAATTTAACTAATTT 58.283 29.630 7.10 0.00 46.50 1.82
5758 6087 7.333174 CCATGTTTGGCCGAAATTTAACTAATT 59.667 33.333 7.10 0.00 35.60 1.40
5759 6088 6.816140 CCATGTTTGGCCGAAATTTAACTAAT 59.184 34.615 7.10 0.00 35.85 1.73
5760 6089 6.159988 CCATGTTTGGCCGAAATTTAACTAA 58.840 36.000 7.10 0.00 35.85 2.24
5761 6090 5.715070 CCATGTTTGGCCGAAATTTAACTA 58.285 37.500 7.10 0.00 35.85 2.24
5762 6091 4.565022 CCATGTTTGGCCGAAATTTAACT 58.435 39.130 7.10 0.00 35.85 2.24
5763 6092 4.919677 CCATGTTTGGCCGAAATTTAAC 57.080 40.909 7.10 0.00 35.85 2.01
5775 6104 4.244066 TCATCGAAATTTGCCATGTTTGG 58.756 39.130 0.00 0.00 46.66 3.28
5776 6105 5.842619 TTCATCGAAATTTGCCATGTTTG 57.157 34.783 0.00 0.00 0.00 2.93
5777 6106 7.437793 AATTTCATCGAAATTTGCCATGTTT 57.562 28.000 8.52 0.00 46.07 2.83
5788 6117 2.823196 TGCGCGAATTTCATCGAAAT 57.177 40.000 12.10 0.00 45.48 2.17
5789 6118 2.823196 ATGCGCGAATTTCATCGAAA 57.177 40.000 12.10 0.00 45.48 3.46
5790 6119 2.823196 AATGCGCGAATTTCATCGAA 57.177 40.000 12.10 2.58 45.48 3.71
5791 6120 2.823196 AAATGCGCGAATTTCATCGA 57.177 40.000 19.51 0.00 45.48 3.59
5792 6121 2.845385 TGAAAATGCGCGAATTTCATCG 59.155 40.909 24.83 0.96 45.41 3.84
5795 6124 5.157067 TGTAATGAAAATGCGCGAATTTCA 58.843 33.333 24.83 25.33 44.44 2.69
5796 6125 5.678910 TGTAATGAAAATGCGCGAATTTC 57.321 34.783 24.83 21.20 34.45 2.17
5797 6126 6.645700 AATGTAATGAAAATGCGCGAATTT 57.354 29.167 19.51 19.51 0.00 1.82
5798 6127 7.253950 GGTTAATGTAATGAAAATGCGCGAATT 60.254 33.333 12.10 9.06 0.00 2.17
5799 6128 6.198216 GGTTAATGTAATGAAAATGCGCGAAT 59.802 34.615 12.10 0.00 0.00 3.34
5800 6129 5.513495 GGTTAATGTAATGAAAATGCGCGAA 59.487 36.000 12.10 0.00 0.00 4.70
5801 6130 5.031578 GGTTAATGTAATGAAAATGCGCGA 58.968 37.500 12.10 0.00 0.00 5.87
5802 6131 5.034152 AGGTTAATGTAATGAAAATGCGCG 58.966 37.500 0.00 0.00 0.00 6.86
5803 6132 7.979115 TTAGGTTAATGTAATGAAAATGCGC 57.021 32.000 0.00 0.00 0.00 6.09
5804 6133 9.950680 AGATTAGGTTAATGTAATGAAAATGCG 57.049 29.630 0.00 0.00 0.00 4.73
5832 6161 2.102420 CGGCTTCAACCCCTTTCTTTTT 59.898 45.455 0.00 0.00 0.00 1.94
5833 6162 1.686587 CGGCTTCAACCCCTTTCTTTT 59.313 47.619 0.00 0.00 0.00 2.27
5834 6163 1.328279 CGGCTTCAACCCCTTTCTTT 58.672 50.000 0.00 0.00 0.00 2.52
5835 6164 0.185175 ACGGCTTCAACCCCTTTCTT 59.815 50.000 0.00 0.00 0.00 2.52
5836 6165 0.250770 GACGGCTTCAACCCCTTTCT 60.251 55.000 0.00 0.00 0.00 2.52
5837 6166 1.574702 CGACGGCTTCAACCCCTTTC 61.575 60.000 0.00 0.00 0.00 2.62
5838 6167 1.599797 CGACGGCTTCAACCCCTTT 60.600 57.895 0.00 0.00 0.00 3.11
5839 6168 2.032071 CGACGGCTTCAACCCCTT 59.968 61.111 0.00 0.00 0.00 3.95
5840 6169 4.699522 GCGACGGCTTCAACCCCT 62.700 66.667 0.00 0.00 35.83 4.79
5853 6182 2.661566 CGATGATGATGGCGGCGAC 61.662 63.158 12.98 9.31 0.00 5.19
5854 6183 2.356194 CGATGATGATGGCGGCGA 60.356 61.111 12.98 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.