Multiple sequence alignment - TraesCS6A01G046200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G046200 chr6A 100.000 4934 0 0 1 4934 23680876 23675943 0.000000e+00 9112.0
1 TraesCS6A01G046200 chr6A 81.526 1743 254 45 2234 3953 24772331 24770634 0.000000e+00 1373.0
2 TraesCS6A01G046200 chr6A 82.600 1431 215 25 2677 4085 23652892 23651474 0.000000e+00 1232.0
3 TraesCS6A01G046200 chr6A 81.972 1420 225 19 2690 4090 23636865 23635458 0.000000e+00 1175.0
4 TraesCS6A01G046200 chr6A 84.733 262 36 2 2235 2493 23637436 23637176 4.900000e-65 259.0
5 TraesCS6A01G046200 chr6A 85.638 188 25 2 4226 4413 23635478 23635293 3.900000e-46 196.0
6 TraesCS6A01G046200 chr6A 77.432 257 36 14 1959 2198 23637937 23637686 3.100000e-27 134.0
7 TraesCS6A01G046200 chr6D 94.998 2939 126 15 2007 4934 25649190 25646262 0.000000e+00 4593.0
8 TraesCS6A01G046200 chr6D 82.863 1383 206 20 2690 4050 25641035 25639662 0.000000e+00 1212.0
9 TraesCS6A01G046200 chr6D 85.809 902 61 29 16 907 25651025 25650181 0.000000e+00 894.0
10 TraesCS6A01G046200 chr6D 86.472 377 42 3 1676 2047 25649563 25649191 5.950000e-109 405.0
11 TraesCS6A01G046200 chr6D 85.135 222 27 4 2277 2493 25641566 25641346 6.430000e-54 222.0
12 TraesCS6A01G046200 chr6D 87.791 172 18 3 4242 4413 25639659 25639491 1.080000e-46 198.0
13 TraesCS6A01G046200 chr6D 82.517 143 19 4 4086 4227 350516757 350516620 2.410000e-23 121.0
14 TraesCS6A01G046200 chr6B 94.253 1862 97 6 2012 3868 41457107 41455251 0.000000e+00 2837.0
15 TraesCS6A01G046200 chr6B 81.834 1745 247 45 2234 3953 43223996 43222297 0.000000e+00 1402.0
16 TraesCS6A01G046200 chr6B 96.910 712 18 3 4226 4934 41454777 41454067 0.000000e+00 1190.0
17 TraesCS6A01G046200 chr6B 82.143 1428 215 32 2690 4090 41448038 41446624 0.000000e+00 1188.0
18 TraesCS6A01G046200 chr6B 86.772 378 40 4 1674 2045 41457480 41457107 3.550000e-111 412.0
19 TraesCS6A01G046200 chr6B 95.575 226 6 2 3865 4090 41454978 41454757 4.700000e-95 359.0
20 TraesCS6A01G046200 chr6B 91.031 223 15 5 619 838 41458382 41458162 3.730000e-76 296.0
21 TraesCS6A01G046200 chr6B 90.000 180 11 5 1388 1567 647503155 647503327 4.970000e-55 226.0
22 TraesCS6A01G046200 chr6B 87.234 188 22 2 4226 4413 41446644 41446459 3.870000e-51 213.0
23 TraesCS6A01G046200 chr6B 84.804 204 30 1 2290 2493 41448551 41448349 2.330000e-48 204.0
24 TraesCS6A01G046200 chr6B 89.231 130 12 1 1567 1696 41626773 41626646 1.420000e-35 161.0
25 TraesCS6A01G046200 chr6B 80.473 169 29 3 4577 4742 522421214 522421381 5.180000e-25 126.0
26 TraesCS6A01G046200 chrUn 81.813 1721 247 41 2234 3933 94023987 94022312 0.000000e+00 1384.0
27 TraesCS6A01G046200 chrUn 81.028 1692 275 31 2275 3931 93844647 93846327 0.000000e+00 1304.0
28 TraesCS6A01G046200 chr1D 90.909 187 13 3 1387 1570 443741847 443741662 1.060000e-61 248.0
29 TraesCS6A01G046200 chr3D 89.231 195 19 1 1383 1577 56445146 56444954 4.930000e-60 243.0
30 TraesCS6A01G046200 chr3D 89.674 184 17 2 1384 1565 64764623 64764440 2.970000e-57 233.0
31 TraesCS6A01G046200 chr3D 92.216 167 7 3 1400 1566 22917917 22917757 1.070000e-56 231.0
32 TraesCS6A01G046200 chr3D 79.720 143 23 6 4086 4225 255393316 255393455 1.130000e-16 99.0
33 TraesCS6A01G046200 chr2D 90.710 183 15 1 1384 1566 360552161 360552341 4.930000e-60 243.0
34 TraesCS6A01G046200 chr2D 86.869 198 21 4 1376 1569 620298098 620298294 2.990000e-52 217.0
35 TraesCS6A01G046200 chr2D 81.119 143 15 9 4087 4224 62556580 62556715 2.430000e-18 104.0
36 TraesCS6A01G046200 chr2D 89.873 79 6 2 4149 4227 483870933 483871009 3.140000e-17 100.0
37 TraesCS6A01G046200 chr2A 89.362 188 18 1 1384 1569 669618256 669618443 8.260000e-58 235.0
38 TraesCS6A01G046200 chr1A 89.247 186 13 3 1383 1567 398112546 398112725 4.970000e-55 226.0
39 TraesCS6A01G046200 chr5A 82.353 153 19 7 4080 4227 17438238 17438089 5.180000e-25 126.0
40 TraesCS6A01G046200 chr3B 81.081 148 18 10 4084 4227 377108265 377108406 5.220000e-20 110.0
41 TraesCS6A01G046200 chr7A 78.616 159 14 16 90 241 541434696 541434841 2.450000e-13 87.9
42 TraesCS6A01G046200 chr7A 100.000 30 0 0 1710 1739 595202365 595202394 6.900000e-04 56.5
43 TraesCS6A01G046200 chr5D 85.366 82 9 3 4147 4227 27094074 27094153 1.140000e-11 82.4
44 TraesCS6A01G046200 chr5D 91.525 59 3 2 4170 4227 335137860 335137803 4.090000e-11 80.5
45 TraesCS6A01G046200 chr2B 90.196 51 3 2 2994 3043 761279920 761279871 1.150000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G046200 chr6A 23675943 23680876 4933 True 9112.0 9112 100.00000 1 4934 1 chr6A.!!$R2 4933
1 TraesCS6A01G046200 chr6A 24770634 24772331 1697 True 1373.0 1373 81.52600 2234 3953 1 chr6A.!!$R3 1719
2 TraesCS6A01G046200 chr6A 23651474 23652892 1418 True 1232.0 1232 82.60000 2677 4085 1 chr6A.!!$R1 1408
3 TraesCS6A01G046200 chr6A 23635293 23637937 2644 True 441.0 1175 82.44375 1959 4413 4 chr6A.!!$R4 2454
4 TraesCS6A01G046200 chr6D 25646262 25651025 4763 True 1964.0 4593 89.09300 16 4934 3 chr6D.!!$R3 4918
5 TraesCS6A01G046200 chr6D 25639491 25641566 2075 True 544.0 1212 85.26300 2277 4413 3 chr6D.!!$R2 2136
6 TraesCS6A01G046200 chr6B 43222297 43223996 1699 True 1402.0 1402 81.83400 2234 3953 1 chr6B.!!$R2 1719
7 TraesCS6A01G046200 chr6B 41454067 41458382 4315 True 1018.8 2837 92.90820 619 4934 5 chr6B.!!$R4 4315
8 TraesCS6A01G046200 chr6B 41446459 41448551 2092 True 535.0 1188 84.72700 2290 4413 3 chr6B.!!$R3 2123
9 TraesCS6A01G046200 chrUn 94022312 94023987 1675 True 1384.0 1384 81.81300 2234 3933 1 chrUn.!!$R1 1699
10 TraesCS6A01G046200 chrUn 93844647 93846327 1680 False 1304.0 1304 81.02800 2275 3931 1 chrUn.!!$F1 1656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 851 0.103937 GGCCACTCTCTCCAATCGAG 59.896 60.0 0.00 0.00 40.30 4.04 F
1385 1651 0.035176 TCCGGACGGTTTTTACTGGG 59.965 55.0 10.90 0.00 36.47 4.45 F
2403 2952 0.099968 CCTTGATGCCAATGCGTGAG 59.900 55.0 0.00 0.00 41.78 3.51 F
3075 3810 0.591236 CACTTGTGGAAACGTTGCCG 60.591 55.0 20.61 8.54 40.83 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 2958 0.247301 GAGATACGCAAGCAACACGC 60.247 55.000 0.0 0.0 45.62 5.34 R
2533 3208 0.400213 TGGTTCCTGAGAATGCGGTT 59.600 50.000 0.0 0.0 33.67 4.44 R
3267 4024 1.603802 CACCTGCACAAGAACGATGTT 59.396 47.619 0.0 0.0 0.00 2.71 R
4912 5960 0.684535 TCGGCACAAAGTGGAGATCA 59.315 50.000 0.0 0.0 33.64 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
264 266 2.046892 CAGGAGGGGTTGTCGCTG 60.047 66.667 0.00 0.00 38.88 5.18
279 281 3.044059 GCTGTTCGATGTGCCAGCC 62.044 63.158 0.00 0.00 43.45 4.85
310 312 1.733912 CGGCTTTTTCCTACCGGTAAC 59.266 52.381 16.65 0.00 41.95 2.50
337 339 2.808543 GCTTCCGAGCTTTTTCTTCTGA 59.191 45.455 0.00 0.00 45.65 3.27
357 363 9.911980 CTTCTGATTTTTCTTTCTTTGCTTTTC 57.088 29.630 0.00 0.00 0.00 2.29
376 382 6.625960 GCTTTTCTTTCTCTGTTTTCTGTGGT 60.626 38.462 0.00 0.00 0.00 4.16
381 387 7.312899 TCTTTCTCTGTTTTCTGTGGTTTTTC 58.687 34.615 0.00 0.00 0.00 2.29
383 389 6.194796 TCTCTGTTTTCTGTGGTTTTTCTG 57.805 37.500 0.00 0.00 0.00 3.02
385 391 5.949735 TCTGTTTTCTGTGGTTTTTCTGTC 58.050 37.500 0.00 0.00 0.00 3.51
387 393 6.208599 TCTGTTTTCTGTGGTTTTTCTGTCTT 59.791 34.615 0.00 0.00 0.00 3.01
389 395 6.866248 TGTTTTCTGTGGTTTTTCTGTCTTTC 59.134 34.615 0.00 0.00 0.00 2.62
409 419 1.458588 GGGGCTGGGTTTTGTCCAA 60.459 57.895 0.00 0.00 33.36 3.53
410 420 0.835971 GGGGCTGGGTTTTGTCCAAT 60.836 55.000 0.00 0.00 33.36 3.16
446 456 7.533289 TTAAATCCCAGGACTTTTTCGAAAT 57.467 32.000 12.12 0.00 0.00 2.17
448 458 4.846779 TCCCAGGACTTTTTCGAAATTG 57.153 40.909 12.12 9.93 0.00 2.32
521 531 1.484444 GGTGTGGGAAGAGCAGACCT 61.484 60.000 0.00 0.00 30.62 3.85
528 538 2.129555 GAAGAGCAGACCTTGGGCCA 62.130 60.000 0.00 0.00 0.00 5.36
531 541 2.674380 GCAGACCTTGGGCCAGTG 60.674 66.667 6.23 4.37 0.00 3.66
533 543 3.177884 AGACCTTGGGCCAGTGCA 61.178 61.111 6.23 0.00 40.13 4.57
540 550 3.896133 GGGCCAGTGCATCGCATG 61.896 66.667 4.39 0.00 41.91 4.06
554 564 1.299620 GCATGCCGCACAATCATCC 60.300 57.895 6.36 0.00 41.79 3.51
574 585 9.971922 ATCATCCGGAAGAAATGAAATTATTTC 57.028 29.630 14.24 10.47 43.88 2.17
645 656 2.358247 CGCACTTGTTAGCCCCGT 60.358 61.111 0.00 0.00 0.00 5.28
722 733 6.105333 CAGAAACAAGGATAGACAAGGAGAG 58.895 44.000 0.00 0.00 0.00 3.20
740 751 1.411977 GAGCAGAGCAGAGCTGGATAA 59.588 52.381 0.00 0.00 42.04 1.75
749 760 2.122768 AGAGCTGGATAAGAGTTGGGG 58.877 52.381 0.00 0.00 0.00 4.96
763 774 3.412408 GGGGTCTGAAGGAGGGGC 61.412 72.222 0.00 0.00 0.00 5.80
765 776 2.683933 GGTCTGAAGGAGGGGCGA 60.684 66.667 0.00 0.00 0.00 5.54
772 783 2.459202 GAAGGAGGGGCGAAACGGAA 62.459 60.000 0.00 0.00 0.00 4.30
810 821 2.862223 CGATCCGAGGGAGGAAGGC 61.862 68.421 0.00 0.00 44.50 4.35
814 825 1.687493 CCGAGGGAGGAAGGCTTCT 60.687 63.158 25.25 12.37 0.00 2.85
838 849 1.227089 CGGCCACTCTCTCCAATCG 60.227 63.158 2.24 0.00 0.00 3.34
839 850 1.667154 CGGCCACTCTCTCCAATCGA 61.667 60.000 2.24 0.00 0.00 3.59
840 851 0.103937 GGCCACTCTCTCCAATCGAG 59.896 60.000 0.00 0.00 40.30 4.04
841 852 0.529555 GCCACTCTCTCCAATCGAGC 60.530 60.000 0.00 0.00 38.62 5.03
842 853 1.110442 CCACTCTCTCCAATCGAGCT 58.890 55.000 0.00 0.00 38.62 4.09
843 854 1.066908 CCACTCTCTCCAATCGAGCTC 59.933 57.143 2.73 2.73 38.62 4.09
844 855 1.066908 CACTCTCTCCAATCGAGCTCC 59.933 57.143 8.47 0.00 38.62 4.70
845 856 1.064017 ACTCTCTCCAATCGAGCTCCT 60.064 52.381 8.47 0.00 38.62 3.69
846 857 2.031120 CTCTCTCCAATCGAGCTCCTT 58.969 52.381 8.47 0.00 38.62 3.36
847 858 2.430332 CTCTCTCCAATCGAGCTCCTTT 59.570 50.000 8.47 0.00 38.62 3.11
848 859 3.632333 TCTCTCCAATCGAGCTCCTTTA 58.368 45.455 8.47 0.00 38.62 1.85
849 860 3.381908 TCTCTCCAATCGAGCTCCTTTAC 59.618 47.826 8.47 0.00 38.62 2.01
850 861 3.366396 TCTCCAATCGAGCTCCTTTACT 58.634 45.455 8.47 0.00 38.62 2.24
851 862 3.131223 TCTCCAATCGAGCTCCTTTACTG 59.869 47.826 8.47 0.00 38.62 2.74
852 863 3.096852 TCCAATCGAGCTCCTTTACTGA 58.903 45.455 8.47 0.00 0.00 3.41
853 864 3.513912 TCCAATCGAGCTCCTTTACTGAA 59.486 43.478 8.47 0.00 0.00 3.02
893 904 1.677552 GAGGAAGCAACCGGGAGAA 59.322 57.895 6.32 0.00 34.73 2.87
894 905 0.391793 GAGGAAGCAACCGGGAGAAG 60.392 60.000 6.32 0.00 34.73 2.85
895 906 0.836400 AGGAAGCAACCGGGAGAAGA 60.836 55.000 6.32 0.00 34.73 2.87
907 918 1.636003 GGGAGAAGATTCAGGTGGGTT 59.364 52.381 0.00 0.00 0.00 4.11
908 919 2.041755 GGGAGAAGATTCAGGTGGGTTT 59.958 50.000 0.00 0.00 0.00 3.27
909 920 3.500471 GGGAGAAGATTCAGGTGGGTTTT 60.500 47.826 0.00 0.00 0.00 2.43
910 921 3.759086 GGAGAAGATTCAGGTGGGTTTTC 59.241 47.826 0.00 0.00 0.00 2.29
911 922 4.507512 GGAGAAGATTCAGGTGGGTTTTCT 60.508 45.833 0.00 0.00 0.00 2.52
913 924 4.104738 AGAAGATTCAGGTGGGTTTTCTCA 59.895 41.667 0.00 0.00 0.00 3.27
914 925 4.453480 AGATTCAGGTGGGTTTTCTCAA 57.547 40.909 0.00 0.00 29.11 3.02
930 970 1.040893 TCAAGAGATCGGGCGCCTTA 61.041 55.000 28.56 15.48 0.00 2.69
939 979 1.729881 GGGCGCCTTATCTGCTTTG 59.270 57.895 28.56 0.00 0.00 2.77
946 986 3.505836 GCCTTATCTGCTTTGTTCTTGC 58.494 45.455 0.00 0.00 0.00 4.01
969 1011 1.358152 TCCATCCATAACGATCCCCC 58.642 55.000 0.00 0.00 0.00 5.40
979 1021 3.808834 AACGATCCCCCTTTTTCTTCT 57.191 42.857 0.00 0.00 0.00 2.85
984 1026 1.772453 TCCCCCTTTTTCTTCTGTCGT 59.228 47.619 0.00 0.00 0.00 4.34
1035 1077 2.981898 ACGGGTAAAAGAAAGGGATCG 58.018 47.619 0.00 0.00 0.00 3.69
1036 1078 2.285977 CGGGTAAAAGAAAGGGATCGG 58.714 52.381 0.00 0.00 0.00 4.18
1040 1082 2.130272 AAAAGAAAGGGATCGGCCTC 57.870 50.000 0.00 0.00 36.66 4.70
1110 1155 1.627297 GCTCAATCCCGGACCTTCCT 61.627 60.000 0.73 0.00 33.30 3.36
1125 1170 0.333993 TTCCTGAGGTACCGGCTACT 59.666 55.000 6.18 0.00 0.00 2.57
1145 1190 3.380637 ACTGATGCCTTGAATTCTGATGC 59.619 43.478 7.05 5.11 0.00 3.91
1146 1191 3.358118 TGATGCCTTGAATTCTGATGCA 58.642 40.909 7.05 10.39 0.00 3.96
1148 1193 5.134661 TGATGCCTTGAATTCTGATGCATA 58.865 37.500 18.47 9.53 38.02 3.14
1149 1194 5.595133 TGATGCCTTGAATTCTGATGCATAA 59.405 36.000 18.47 12.46 38.02 1.90
1150 1195 6.266786 TGATGCCTTGAATTCTGATGCATAAT 59.733 34.615 18.47 0.00 38.02 1.28
1152 1197 7.210718 TGCCTTGAATTCTGATGCATAATAG 57.789 36.000 7.05 0.00 0.00 1.73
1153 1198 6.774170 TGCCTTGAATTCTGATGCATAATAGT 59.226 34.615 7.05 0.00 0.00 2.12
1178 1417 9.224058 GTACGATTTACAAACAGAGTAGAGATC 57.776 37.037 0.00 0.00 0.00 2.75
1179 1418 8.057536 ACGATTTACAAACAGAGTAGAGATCT 57.942 34.615 0.00 0.00 0.00 2.75
1180 1419 8.524487 ACGATTTACAAACAGAGTAGAGATCTT 58.476 33.333 0.00 0.00 0.00 2.40
1181 1420 9.360093 CGATTTACAAACAGAGTAGAGATCTTT 57.640 33.333 0.00 0.00 0.00 2.52
1184 1423 9.698309 TTTACAAACAGAGTAGAGATCTTTCTG 57.302 33.333 18.25 18.25 39.89 3.02
1185 1424 6.696411 ACAAACAGAGTAGAGATCTTTCTGG 58.304 40.000 21.32 12.28 39.10 3.86
1186 1425 6.268847 ACAAACAGAGTAGAGATCTTTCTGGT 59.731 38.462 21.32 16.40 39.10 4.00
1187 1426 6.524101 AACAGAGTAGAGATCTTTCTGGTC 57.476 41.667 21.32 8.70 39.10 4.02
1188 1427 5.575157 ACAGAGTAGAGATCTTTCTGGTCA 58.425 41.667 21.32 0.00 39.10 4.02
1189 1428 5.417580 ACAGAGTAGAGATCTTTCTGGTCAC 59.582 44.000 21.32 3.91 39.10 3.67
1190 1429 4.638421 AGAGTAGAGATCTTTCTGGTCACG 59.362 45.833 0.00 0.00 30.30 4.35
1191 1430 4.337145 AGTAGAGATCTTTCTGGTCACGT 58.663 43.478 0.00 0.00 30.30 4.49
1192 1431 3.859411 AGAGATCTTTCTGGTCACGTC 57.141 47.619 0.00 0.00 30.30 4.34
1193 1432 2.494073 AGAGATCTTTCTGGTCACGTCC 59.506 50.000 0.00 0.00 30.30 4.79
1194 1433 2.494073 GAGATCTTTCTGGTCACGTCCT 59.506 50.000 0.00 0.00 30.30 3.85
1195 1434 3.695060 GAGATCTTTCTGGTCACGTCCTA 59.305 47.826 0.00 0.00 30.30 2.94
1196 1435 3.697045 AGATCTTTCTGGTCACGTCCTAG 59.303 47.826 0.00 0.00 0.00 3.02
1197 1436 2.872732 TCTTTCTGGTCACGTCCTAGT 58.127 47.619 0.00 0.00 0.00 2.57
1198 1437 2.557056 TCTTTCTGGTCACGTCCTAGTG 59.443 50.000 0.00 0.00 43.11 2.74
1199 1438 1.991121 TTCTGGTCACGTCCTAGTGT 58.009 50.000 0.00 0.00 42.40 3.55
1200 1439 1.991121 TCTGGTCACGTCCTAGTGTT 58.009 50.000 0.00 0.00 42.40 3.32
1201 1440 2.313317 TCTGGTCACGTCCTAGTGTTT 58.687 47.619 0.00 0.00 42.40 2.83
1202 1441 2.696707 TCTGGTCACGTCCTAGTGTTTT 59.303 45.455 0.00 0.00 42.40 2.43
1203 1442 3.133362 TCTGGTCACGTCCTAGTGTTTTT 59.867 43.478 0.00 0.00 42.40 1.94
1230 1469 7.020827 TCTTTCTTTCTGGTCACATCCTAAT 57.979 36.000 0.00 0.00 0.00 1.73
1238 1477 4.578871 TGGTCACATCCTAATGTTGACAG 58.421 43.478 15.94 0.00 43.74 3.51
1277 1516 9.750125 GGTTTTTACTGAATGAGTGAGAAATTT 57.250 29.630 0.00 0.00 35.96 1.82
1290 1529 5.080068 GTGAGAAATTTGACGATTCGTTCC 58.920 41.667 13.72 1.97 41.37 3.62
1291 1530 4.143200 TGAGAAATTTGACGATTCGTTCCG 60.143 41.667 13.72 0.00 41.37 4.30
1293 1532 0.725117 ATTTGACGATTCGTTCCGGC 59.275 50.000 13.72 0.44 41.37 6.13
1294 1533 1.293267 TTTGACGATTCGTTCCGGCC 61.293 55.000 13.72 0.00 41.37 6.13
1295 1534 3.252484 GACGATTCGTTCCGGCCG 61.252 66.667 21.04 21.04 41.37 6.13
1298 1537 2.818274 GATTCGTTCCGGCCGCTT 60.818 61.111 22.85 0.00 0.00 4.68
1301 1540 1.087771 ATTCGTTCCGGCCGCTTTAG 61.088 55.000 22.85 5.67 0.00 1.85
1303 1569 2.736682 CGTTCCGGCCGCTTTAGTG 61.737 63.158 22.85 3.88 0.00 2.74
1308 1574 2.171725 CGGCCGCTTTAGTGCTACC 61.172 63.158 14.67 0.00 0.00 3.18
1315 1581 2.597305 CGCTTTAGTGCTACCGTAACTG 59.403 50.000 0.00 0.00 0.00 3.16
1321 1587 1.000060 GTGCTACCGTAACTGGTGTGA 60.000 52.381 0.00 0.00 43.68 3.58
1328 1594 4.964593 ACCGTAACTGGTGTGATTTAGTT 58.035 39.130 0.00 0.00 41.85 2.24
1331 1597 6.815142 ACCGTAACTGGTGTGATTTAGTTATC 59.185 38.462 0.00 0.00 41.85 1.75
1332 1598 6.020121 CCGTAACTGGTGTGATTTAGTTATCG 60.020 42.308 0.00 0.00 37.77 2.92
1334 1600 4.827692 ACTGGTGTGATTTAGTTATCGCA 58.172 39.130 0.00 0.00 41.39 5.10
1341 1607 7.930513 TGTGATTTAGTTATCGCACATCTAG 57.069 36.000 0.00 0.00 39.43 2.43
1342 1608 7.712797 TGTGATTTAGTTATCGCACATCTAGA 58.287 34.615 0.00 0.00 39.43 2.43
1343 1609 8.360390 TGTGATTTAGTTATCGCACATCTAGAT 58.640 33.333 0.00 0.00 39.43 1.98
1344 1610 9.197694 GTGATTTAGTTATCGCACATCTAGATT 57.802 33.333 1.33 0.00 35.59 2.40
1345 1611 9.411801 TGATTTAGTTATCGCACATCTAGATTC 57.588 33.333 1.33 0.00 0.00 2.52
1346 1612 9.411801 GATTTAGTTATCGCACATCTAGATTCA 57.588 33.333 1.33 0.00 0.00 2.57
1347 1613 9.935241 ATTTAGTTATCGCACATCTAGATTCAT 57.065 29.630 1.33 0.00 0.00 2.57
1348 1614 9.764363 TTTAGTTATCGCACATCTAGATTCATT 57.236 29.630 1.33 0.00 0.00 2.57
1349 1615 7.881643 AGTTATCGCACATCTAGATTCATTC 57.118 36.000 1.33 0.00 0.00 2.67
1350 1616 6.870965 AGTTATCGCACATCTAGATTCATTCC 59.129 38.462 1.33 0.00 0.00 3.01
1351 1617 4.944619 TCGCACATCTAGATTCATTCCT 57.055 40.909 1.33 0.00 0.00 3.36
1352 1618 4.625028 TCGCACATCTAGATTCATTCCTG 58.375 43.478 1.33 0.00 0.00 3.86
1353 1619 3.744942 CGCACATCTAGATTCATTCCTGG 59.255 47.826 1.33 0.00 0.00 4.45
1354 1620 3.501445 GCACATCTAGATTCATTCCTGGC 59.499 47.826 1.33 0.00 0.00 4.85
1355 1621 4.070716 CACATCTAGATTCATTCCTGGCC 58.929 47.826 1.33 0.00 0.00 5.36
1356 1622 3.244353 ACATCTAGATTCATTCCTGGCCG 60.244 47.826 1.33 0.00 0.00 6.13
1357 1623 2.677914 TCTAGATTCATTCCTGGCCGA 58.322 47.619 0.00 0.00 0.00 5.54
1358 1624 2.365617 TCTAGATTCATTCCTGGCCGAC 59.634 50.000 0.00 0.00 0.00 4.79
1359 1625 0.179073 AGATTCATTCCTGGCCGACG 60.179 55.000 0.00 0.00 0.00 5.12
1360 1626 0.179084 GATTCATTCCTGGCCGACGA 60.179 55.000 0.00 0.00 0.00 4.20
1361 1627 0.469917 ATTCATTCCTGGCCGACGAT 59.530 50.000 0.00 0.00 0.00 3.73
1362 1628 0.251916 TTCATTCCTGGCCGACGATT 59.748 50.000 0.00 0.00 0.00 3.34
1363 1629 0.179084 TCATTCCTGGCCGACGATTC 60.179 55.000 0.00 0.00 0.00 2.52
1364 1630 0.461870 CATTCCTGGCCGACGATTCA 60.462 55.000 0.00 0.00 0.00 2.57
1365 1631 0.469917 ATTCCTGGCCGACGATTCAT 59.530 50.000 0.00 0.00 0.00 2.57
1366 1632 0.251916 TTCCTGGCCGACGATTCATT 59.748 50.000 0.00 0.00 0.00 2.57
1367 1633 0.179084 TCCTGGCCGACGATTCATTC 60.179 55.000 0.00 0.00 0.00 2.67
1368 1634 1.160329 CCTGGCCGACGATTCATTCC 61.160 60.000 0.00 0.00 0.00 3.01
1369 1635 1.490693 CTGGCCGACGATTCATTCCG 61.491 60.000 0.00 0.00 0.00 4.30
1370 1636 2.244651 GGCCGACGATTCATTCCGG 61.245 63.158 0.00 0.00 42.74 5.14
1371 1637 1.227147 GCCGACGATTCATTCCGGA 60.227 57.895 0.00 0.00 42.49 5.14
1372 1638 1.488261 GCCGACGATTCATTCCGGAC 61.488 60.000 1.83 0.00 42.49 4.79
1373 1639 1.206745 CCGACGATTCATTCCGGACG 61.207 60.000 1.83 5.89 42.49 4.79
1374 1640 1.206745 CGACGATTCATTCCGGACGG 61.207 60.000 1.83 3.96 0.00 4.79
1375 1641 0.179119 GACGATTCATTCCGGACGGT 60.179 55.000 1.83 0.00 36.47 4.83
1376 1642 0.248289 ACGATTCATTCCGGACGGTT 59.752 50.000 1.83 0.00 36.47 4.44
1377 1643 1.338389 ACGATTCATTCCGGACGGTTT 60.338 47.619 1.83 0.00 36.47 3.27
1378 1644 1.735571 CGATTCATTCCGGACGGTTTT 59.264 47.619 1.83 0.00 36.47 2.43
1379 1645 2.160813 CGATTCATTCCGGACGGTTTTT 59.839 45.455 1.83 0.00 36.47 1.94
1380 1646 3.371591 CGATTCATTCCGGACGGTTTTTA 59.628 43.478 1.83 0.00 36.47 1.52
1381 1647 4.655027 GATTCATTCCGGACGGTTTTTAC 58.345 43.478 1.83 0.00 36.47 2.01
1382 1648 3.405823 TCATTCCGGACGGTTTTTACT 57.594 42.857 1.83 0.00 36.47 2.24
1383 1649 3.068560 TCATTCCGGACGGTTTTTACTG 58.931 45.455 1.83 0.00 36.47 2.74
1384 1650 1.881591 TTCCGGACGGTTTTTACTGG 58.118 50.000 1.83 0.00 36.47 4.00
1385 1651 0.035176 TCCGGACGGTTTTTACTGGG 59.965 55.000 10.90 0.00 36.47 4.45
1386 1652 0.250424 CCGGACGGTTTTTACTGGGT 60.250 55.000 0.00 0.00 0.00 4.51
1387 1653 1.596603 CGGACGGTTTTTACTGGGTT 58.403 50.000 0.00 0.00 0.00 4.11
1388 1654 1.948834 CGGACGGTTTTTACTGGGTTT 59.051 47.619 0.00 0.00 0.00 3.27
1389 1655 2.287129 CGGACGGTTTTTACTGGGTTTG 60.287 50.000 0.00 0.00 0.00 2.93
1390 1656 2.689471 GGACGGTTTTTACTGGGTTTGT 59.311 45.455 0.00 0.00 0.00 2.83
1391 1657 3.243168 GGACGGTTTTTACTGGGTTTGTC 60.243 47.826 0.00 0.00 0.00 3.18
1392 1658 3.623703 ACGGTTTTTACTGGGTTTGTCT 58.376 40.909 0.00 0.00 0.00 3.41
1393 1659 4.779696 ACGGTTTTTACTGGGTTTGTCTA 58.220 39.130 0.00 0.00 0.00 2.59
1394 1660 5.379187 ACGGTTTTTACTGGGTTTGTCTAT 58.621 37.500 0.00 0.00 0.00 1.98
1395 1661 6.532826 ACGGTTTTTACTGGGTTTGTCTATA 58.467 36.000 0.00 0.00 0.00 1.31
1396 1662 6.652062 ACGGTTTTTACTGGGTTTGTCTATAG 59.348 38.462 0.00 0.00 0.00 1.31
1397 1663 6.402875 CGGTTTTTACTGGGTTTGTCTATAGC 60.403 42.308 0.00 0.00 0.00 2.97
1398 1664 6.402875 GGTTTTTACTGGGTTTGTCTATAGCG 60.403 42.308 0.00 0.00 0.00 4.26
1399 1665 2.311124 ACTGGGTTTGTCTATAGCGC 57.689 50.000 0.00 0.00 0.00 5.92
1400 1666 1.553248 ACTGGGTTTGTCTATAGCGCA 59.447 47.619 11.47 0.00 0.00 6.09
1401 1667 2.170607 ACTGGGTTTGTCTATAGCGCAT 59.829 45.455 11.47 3.63 0.00 4.73
1402 1668 2.802816 CTGGGTTTGTCTATAGCGCATC 59.197 50.000 11.47 0.00 0.00 3.91
1403 1669 2.434336 TGGGTTTGTCTATAGCGCATCT 59.566 45.455 11.47 0.00 0.00 2.90
1404 1670 3.639561 TGGGTTTGTCTATAGCGCATCTA 59.360 43.478 11.47 0.00 0.00 1.98
1405 1671 4.238514 GGGTTTGTCTATAGCGCATCTAG 58.761 47.826 11.47 7.38 0.00 2.43
1406 1672 4.022242 GGGTTTGTCTATAGCGCATCTAGA 60.022 45.833 11.47 9.82 0.00 2.43
1407 1673 5.336849 GGGTTTGTCTATAGCGCATCTAGAT 60.337 44.000 11.47 0.00 0.00 1.98
1408 1674 5.574830 GGTTTGTCTATAGCGCATCTAGATG 59.425 44.000 25.64 25.64 41.60 2.90
1409 1675 5.966742 TTGTCTATAGCGCATCTAGATGT 57.033 39.130 28.92 15.26 40.80 3.06
1417 1683 3.377346 CGCATCTAGATGTGCCTTAGT 57.623 47.619 28.27 0.00 41.62 2.24
1418 1684 3.722147 CGCATCTAGATGTGCCTTAGTT 58.278 45.455 28.27 0.00 41.62 2.24
1419 1685 4.871513 CGCATCTAGATGTGCCTTAGTTA 58.128 43.478 28.27 0.00 41.62 2.24
1420 1686 5.473931 CGCATCTAGATGTGCCTTAGTTAT 58.526 41.667 28.27 0.00 41.62 1.89
1421 1687 5.928839 CGCATCTAGATGTGCCTTAGTTATT 59.071 40.000 28.27 0.00 41.62 1.40
1422 1688 6.128715 CGCATCTAGATGTGCCTTAGTTATTG 60.129 42.308 28.27 4.17 41.62 1.90
1423 1689 6.348050 GCATCTAGATGTGCCTTAGTTATTGC 60.348 42.308 28.92 10.66 40.80 3.56
1424 1690 6.233905 TCTAGATGTGCCTTAGTTATTGCA 57.766 37.500 0.00 0.00 0.00 4.08
1432 1698 6.925610 TGCCTTAGTTATTGCACATCTAAG 57.074 37.500 14.73 14.73 38.01 2.18
1433 1699 6.414732 TGCCTTAGTTATTGCACATCTAAGT 58.585 36.000 17.73 7.66 37.15 2.24
1434 1700 6.316140 TGCCTTAGTTATTGCACATCTAAGTG 59.684 38.462 17.73 13.14 42.37 3.16
1435 1701 6.538742 GCCTTAGTTATTGCACATCTAAGTGA 59.461 38.462 17.73 3.36 42.05 3.41
1436 1702 7.466050 GCCTTAGTTATTGCACATCTAAGTGAC 60.466 40.741 17.73 9.25 42.05 3.67
1437 1703 7.549134 CCTTAGTTATTGCACATCTAAGTGACA 59.451 37.037 17.73 0.00 42.05 3.58
1438 1704 6.727824 AGTTATTGCACATCTAAGTGACAC 57.272 37.500 0.00 0.00 42.05 3.67
1439 1705 6.230472 AGTTATTGCACATCTAAGTGACACA 58.770 36.000 8.59 0.00 42.05 3.72
1440 1706 6.710295 AGTTATTGCACATCTAAGTGACACAA 59.290 34.615 8.59 0.00 42.05 3.33
1441 1707 5.618056 ATTGCACATCTAAGTGACACAAG 57.382 39.130 8.59 5.04 42.05 3.16
1442 1708 2.807967 TGCACATCTAAGTGACACAAGC 59.192 45.455 8.59 0.70 42.05 4.01
1443 1709 2.807967 GCACATCTAAGTGACACAAGCA 59.192 45.455 8.59 0.00 42.05 3.91
1444 1710 3.250762 GCACATCTAAGTGACACAAGCAA 59.749 43.478 8.59 0.00 42.05 3.91
1445 1711 4.612259 GCACATCTAAGTGACACAAGCAAG 60.612 45.833 8.59 0.00 42.05 4.01
1446 1712 3.499918 ACATCTAAGTGACACAAGCAAGC 59.500 43.478 8.59 0.00 0.00 4.01
1447 1713 3.192541 TCTAAGTGACACAAGCAAGCA 57.807 42.857 8.59 0.00 0.00 3.91
1448 1714 3.743521 TCTAAGTGACACAAGCAAGCAT 58.256 40.909 8.59 0.00 0.00 3.79
1449 1715 4.893608 TCTAAGTGACACAAGCAAGCATA 58.106 39.130 8.59 0.00 0.00 3.14
1450 1716 4.931601 TCTAAGTGACACAAGCAAGCATAG 59.068 41.667 8.59 0.00 0.00 2.23
1451 1717 3.407424 AGTGACACAAGCAAGCATAGA 57.593 42.857 8.59 0.00 0.00 1.98
1452 1718 3.743521 AGTGACACAAGCAAGCATAGAA 58.256 40.909 8.59 0.00 0.00 2.10
1453 1719 4.136796 AGTGACACAAGCAAGCATAGAAA 58.863 39.130 8.59 0.00 0.00 2.52
1454 1720 4.214971 AGTGACACAAGCAAGCATAGAAAG 59.785 41.667 8.59 0.00 0.00 2.62
1455 1721 3.503363 TGACACAAGCAAGCATAGAAAGG 59.497 43.478 0.00 0.00 0.00 3.11
1456 1722 3.753272 GACACAAGCAAGCATAGAAAGGA 59.247 43.478 0.00 0.00 0.00 3.36
1457 1723 4.144297 ACACAAGCAAGCATAGAAAGGAA 58.856 39.130 0.00 0.00 0.00 3.36
1458 1724 4.584325 ACACAAGCAAGCATAGAAAGGAAA 59.416 37.500 0.00 0.00 0.00 3.13
1459 1725 5.068987 ACACAAGCAAGCATAGAAAGGAAAA 59.931 36.000 0.00 0.00 0.00 2.29
1460 1726 5.984926 CACAAGCAAGCATAGAAAGGAAAAA 59.015 36.000 0.00 0.00 0.00 1.94
1461 1727 6.647895 CACAAGCAAGCATAGAAAGGAAAAAT 59.352 34.615 0.00 0.00 0.00 1.82
1462 1728 7.814107 CACAAGCAAGCATAGAAAGGAAAAATA 59.186 33.333 0.00 0.00 0.00 1.40
1463 1729 8.031277 ACAAGCAAGCATAGAAAGGAAAAATAG 58.969 33.333 0.00 0.00 0.00 1.73
1464 1730 7.944729 AGCAAGCATAGAAAGGAAAAATAGA 57.055 32.000 0.00 0.00 0.00 1.98
1465 1731 8.353423 AGCAAGCATAGAAAGGAAAAATAGAA 57.647 30.769 0.00 0.00 0.00 2.10
1466 1732 8.806146 AGCAAGCATAGAAAGGAAAAATAGAAA 58.194 29.630 0.00 0.00 0.00 2.52
1467 1733 9.423061 GCAAGCATAGAAAGGAAAAATAGAAAA 57.577 29.630 0.00 0.00 0.00 2.29
1499 1765 4.123497 TCCACACGGATCTTCATGTAAG 57.877 45.455 0.00 0.00 35.91 2.34
1531 1797 9.314133 TGATATAGGACTTAGATGTGCAATACT 57.686 33.333 0.00 0.00 0.00 2.12
1535 1801 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
1536 1802 7.220030 AGGACTTAGATGTGCAATACTTATGG 58.780 38.462 0.00 0.00 0.00 2.74
1537 1803 6.073003 GGACTTAGATGTGCAATACTTATGGC 60.073 42.308 0.00 0.00 33.16 4.40
1538 1804 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
1574 1840 7.586714 GCTTTAGCAAAACTGATTTAGCAAT 57.413 32.000 0.00 0.00 41.59 3.56
1575 1841 8.021955 GCTTTAGCAAAACTGATTTAGCAATT 57.978 30.769 0.00 0.00 41.59 2.32
1576 1842 9.139174 GCTTTAGCAAAACTGATTTAGCAATTA 57.861 29.630 0.00 0.00 41.59 1.40
1579 1845 9.840427 TTAGCAAAACTGATTTAGCAATTACTC 57.160 29.630 0.00 0.00 31.57 2.59
1580 1846 7.315890 AGCAAAACTGATTTAGCAATTACTCC 58.684 34.615 0.00 0.00 31.57 3.85
1581 1847 6.531594 GCAAAACTGATTTAGCAATTACTCCC 59.468 38.462 0.00 0.00 0.00 4.30
1582 1848 7.577616 GCAAAACTGATTTAGCAATTACTCCCT 60.578 37.037 0.00 0.00 0.00 4.20
1583 1849 7.631717 AAACTGATTTAGCAATTACTCCCTC 57.368 36.000 0.00 0.00 0.00 4.30
1584 1850 5.685728 ACTGATTTAGCAATTACTCCCTCC 58.314 41.667 0.00 0.00 0.00 4.30
1585 1851 4.703897 TGATTTAGCAATTACTCCCTCCG 58.296 43.478 0.00 0.00 0.00 4.63
1609 1875 7.015877 CGTTCTTTTCTTATAAGGTGCAGTTC 58.984 38.462 12.54 0.00 0.00 3.01
1610 1876 6.721571 TCTTTTCTTATAAGGTGCAGTTCG 57.278 37.500 12.54 0.00 0.00 3.95
1611 1877 5.642063 TCTTTTCTTATAAGGTGCAGTTCGG 59.358 40.000 12.54 0.00 0.00 4.30
1612 1878 2.901249 TCTTATAAGGTGCAGTTCGGC 58.099 47.619 12.54 0.00 0.00 5.54
1613 1879 2.500098 TCTTATAAGGTGCAGTTCGGCT 59.500 45.455 12.54 0.00 34.04 5.52
1615 1881 0.324943 ATAAGGTGCAGTTCGGCTGT 59.675 50.000 9.08 0.00 46.64 4.40
1616 1882 0.320421 TAAGGTGCAGTTCGGCTGTC 60.320 55.000 9.08 3.70 46.64 3.51
1618 1884 2.280797 GTGCAGTTCGGCTGTCCA 60.281 61.111 9.08 0.00 46.64 4.02
1619 1885 1.891919 GTGCAGTTCGGCTGTCCAA 60.892 57.895 9.08 0.00 46.64 3.53
1620 1886 1.153066 TGCAGTTCGGCTGTCCAAA 60.153 52.632 9.08 0.00 46.64 3.28
1621 1887 0.749818 TGCAGTTCGGCTGTCCAAAA 60.750 50.000 9.08 0.00 46.64 2.44
1622 1888 0.598065 GCAGTTCGGCTGTCCAAAAT 59.402 50.000 9.08 0.00 46.64 1.82
1623 1889 1.401539 GCAGTTCGGCTGTCCAAAATC 60.402 52.381 9.08 0.00 46.64 2.17
1624 1890 1.200020 CAGTTCGGCTGTCCAAAATCC 59.800 52.381 0.00 0.00 40.27 3.01
1625 1891 1.202879 AGTTCGGCTGTCCAAAATCCA 60.203 47.619 0.00 0.00 0.00 3.41
1626 1892 1.611491 GTTCGGCTGTCCAAAATCCAA 59.389 47.619 0.00 0.00 0.00 3.53
1627 1893 1.243902 TCGGCTGTCCAAAATCCAAC 58.756 50.000 0.00 0.00 0.00 3.77
1628 1894 0.243636 CGGCTGTCCAAAATCCAACC 59.756 55.000 0.00 0.00 0.00 3.77
1629 1895 1.337118 GGCTGTCCAAAATCCAACCA 58.663 50.000 0.00 0.00 0.00 3.67
1630 1896 1.691434 GGCTGTCCAAAATCCAACCAA 59.309 47.619 0.00 0.00 0.00 3.67
1631 1897 2.103941 GGCTGTCCAAAATCCAACCAAA 59.896 45.455 0.00 0.00 0.00 3.28
1632 1898 3.244526 GGCTGTCCAAAATCCAACCAAAT 60.245 43.478 0.00 0.00 0.00 2.32
1633 1899 4.388485 GCTGTCCAAAATCCAACCAAATT 58.612 39.130 0.00 0.00 0.00 1.82
1634 1900 4.452114 GCTGTCCAAAATCCAACCAAATTC 59.548 41.667 0.00 0.00 0.00 2.17
1635 1901 5.609423 CTGTCCAAAATCCAACCAAATTCA 58.391 37.500 0.00 0.00 0.00 2.57
1636 1902 5.363939 TGTCCAAAATCCAACCAAATTCAC 58.636 37.500 0.00 0.00 0.00 3.18
1637 1903 4.447389 GTCCAAAATCCAACCAAATTCACG 59.553 41.667 0.00 0.00 0.00 4.35
1638 1904 3.186205 CCAAAATCCAACCAAATTCACGC 59.814 43.478 0.00 0.00 0.00 5.34
1639 1905 2.741759 AATCCAACCAAATTCACGCC 57.258 45.000 0.00 0.00 0.00 5.68
1640 1906 1.923356 ATCCAACCAAATTCACGCCT 58.077 45.000 0.00 0.00 0.00 5.52
1641 1907 1.698506 TCCAACCAAATTCACGCCTT 58.301 45.000 0.00 0.00 0.00 4.35
1642 1908 1.339610 TCCAACCAAATTCACGCCTTG 59.660 47.619 0.00 0.00 0.00 3.61
1643 1909 1.339610 CCAACCAAATTCACGCCTTGA 59.660 47.619 0.00 0.00 0.00 3.02
1644 1910 2.393764 CAACCAAATTCACGCCTTGAC 58.606 47.619 0.00 0.00 32.26 3.18
1645 1911 0.958822 ACCAAATTCACGCCTTGACC 59.041 50.000 0.00 0.00 32.26 4.02
1646 1912 0.958091 CCAAATTCACGCCTTGACCA 59.042 50.000 0.00 0.00 32.26 4.02
1647 1913 1.339610 CCAAATTCACGCCTTGACCAA 59.660 47.619 0.00 0.00 32.26 3.67
1648 1914 2.393764 CAAATTCACGCCTTGACCAAC 58.606 47.619 0.00 0.00 32.26 3.77
1649 1915 1.686355 AATTCACGCCTTGACCAACA 58.314 45.000 0.00 0.00 32.26 3.33
1650 1916 1.686355 ATTCACGCCTTGACCAACAA 58.314 45.000 0.00 0.00 32.26 2.83
1651 1917 1.464734 TTCACGCCTTGACCAACAAA 58.535 45.000 0.00 0.00 38.08 2.83
1652 1918 0.736053 TCACGCCTTGACCAACAAAC 59.264 50.000 0.00 0.00 38.08 2.93
1653 1919 0.738389 CACGCCTTGACCAACAAACT 59.262 50.000 0.00 0.00 38.08 2.66
1654 1920 0.738389 ACGCCTTGACCAACAAACTG 59.262 50.000 0.00 0.00 38.08 3.16
1655 1921 0.738389 CGCCTTGACCAACAAACTGT 59.262 50.000 0.00 0.00 38.08 3.55
1656 1922 1.268539 CGCCTTGACCAACAAACTGTC 60.269 52.381 0.00 0.00 38.08 3.51
1657 1923 2.024414 GCCTTGACCAACAAACTGTCT 58.976 47.619 0.00 0.00 38.08 3.41
1658 1924 3.211045 GCCTTGACCAACAAACTGTCTA 58.789 45.455 0.00 0.00 38.08 2.59
1659 1925 3.630312 GCCTTGACCAACAAACTGTCTAA 59.370 43.478 0.00 0.00 38.08 2.10
1660 1926 4.097286 GCCTTGACCAACAAACTGTCTAAA 59.903 41.667 0.00 0.00 38.08 1.85
1661 1927 5.393678 GCCTTGACCAACAAACTGTCTAAAA 60.394 40.000 0.00 0.00 38.08 1.52
1662 1928 6.626302 CCTTGACCAACAAACTGTCTAAAAA 58.374 36.000 0.00 0.00 38.08 1.94
1663 1929 6.751888 CCTTGACCAACAAACTGTCTAAAAAG 59.248 38.462 0.00 0.00 38.08 2.27
1664 1930 6.827586 TGACCAACAAACTGTCTAAAAAGT 57.172 33.333 0.00 0.00 0.00 2.66
1665 1931 7.222000 TGACCAACAAACTGTCTAAAAAGTT 57.778 32.000 0.00 0.00 38.25 2.66
1666 1932 8.338072 TGACCAACAAACTGTCTAAAAAGTTA 57.662 30.769 0.00 0.00 35.60 2.24
1667 1933 8.238631 TGACCAACAAACTGTCTAAAAAGTTAC 58.761 33.333 0.00 0.00 35.60 2.50
1668 1934 7.541162 ACCAACAAACTGTCTAAAAAGTTACC 58.459 34.615 0.00 0.00 35.60 2.85
1669 1935 7.395206 ACCAACAAACTGTCTAAAAAGTTACCT 59.605 33.333 0.00 0.00 35.60 3.08
1670 1936 7.913821 CCAACAAACTGTCTAAAAAGTTACCTC 59.086 37.037 0.00 0.00 35.60 3.85
1671 1937 8.674607 CAACAAACTGTCTAAAAAGTTACCTCT 58.325 33.333 0.00 0.00 35.60 3.69
1672 1938 8.209917 ACAAACTGTCTAAAAAGTTACCTCTG 57.790 34.615 0.00 0.00 35.60 3.35
1673 1939 7.827729 ACAAACTGTCTAAAAAGTTACCTCTGT 59.172 33.333 0.00 0.00 35.60 3.41
1674 1940 8.674607 CAAACTGTCTAAAAAGTTACCTCTGTT 58.325 33.333 0.00 0.00 35.60 3.16
1675 1941 8.434733 AACTGTCTAAAAAGTTACCTCTGTTC 57.565 34.615 0.00 0.00 34.90 3.18
1676 1942 6.700520 ACTGTCTAAAAAGTTACCTCTGTTCG 59.299 38.462 0.00 0.00 0.00 3.95
1677 1943 5.987347 TGTCTAAAAAGTTACCTCTGTTCGG 59.013 40.000 0.00 0.00 0.00 4.30
1678 1944 6.183360 TGTCTAAAAAGTTACCTCTGTTCGGA 60.183 38.462 0.00 0.00 0.00 4.55
1679 1945 6.703165 GTCTAAAAAGTTACCTCTGTTCGGAA 59.297 38.462 0.00 0.00 0.00 4.30
1680 1946 7.225341 GTCTAAAAAGTTACCTCTGTTCGGAAA 59.775 37.037 0.00 0.00 0.00 3.13
1681 1947 6.954487 AAAAAGTTACCTCTGTTCGGAAAT 57.046 33.333 0.00 0.00 0.00 2.17
1704 1970 9.498307 AAATAAGTGACGTTGTTTCAACTAAAG 57.502 29.630 10.21 0.00 0.00 1.85
1720 1986 5.941948 ACTAAAGCAGCGTCACTTATTTT 57.058 34.783 0.00 0.00 0.00 1.82
1723 1989 1.732259 AGCAGCGTCACTTATTTTCGG 59.268 47.619 0.00 0.00 0.00 4.30
1729 1995 2.988493 CGTCACTTATTTTCGGACGGAA 59.012 45.455 0.00 0.00 45.36 4.30
1770 2036 7.040548 TGAGTCATGTGCTTCAAAATTGATACA 60.041 33.333 0.00 4.27 37.00 2.29
1772 2038 7.040201 AGTCATGTGCTTCAAAATTGATACAGT 60.040 33.333 0.00 0.00 37.00 3.55
1774 2040 7.809331 TCATGTGCTTCAAAATTGATACAGTTC 59.191 33.333 0.00 0.00 37.00 3.01
1775 2041 7.036996 TGTGCTTCAAAATTGATACAGTTCA 57.963 32.000 0.00 0.00 37.00 3.18
1787 2053 8.771920 ATTGATACAGTTCAGTTCGTATTCAA 57.228 30.769 0.00 0.00 0.00 2.69
1793 2059 6.017109 ACAGTTCAGTTCGTATTCAAAAGCAT 60.017 34.615 0.00 0.00 0.00 3.79
1811 2077 4.220533 GCATTTGCTGACCACTATCATC 57.779 45.455 0.00 0.00 38.21 2.92
1837 2103 9.307121 CTTCTAACTATCAACAGACAATAGTGG 57.693 37.037 0.00 0.00 36.57 4.00
1838 2104 7.782049 TCTAACTATCAACAGACAATAGTGGG 58.218 38.462 0.00 0.00 36.57 4.61
1839 2105 5.359194 ACTATCAACAGACAATAGTGGGG 57.641 43.478 0.00 0.00 35.45 4.96
1840 2106 3.652057 ATCAACAGACAATAGTGGGGG 57.348 47.619 0.00 0.00 0.00 5.40
1872 2138 7.823745 ATGGTCAAAACTCTGATTTTGTAGT 57.176 32.000 17.06 0.00 45.67 2.73
1921 2192 2.290916 TGAGTAGCACTATGACGCTAGC 59.709 50.000 4.06 4.06 41.23 3.42
2024 2337 1.914634 CTTCGATCACAACCCTCTCG 58.085 55.000 0.00 0.00 0.00 4.04
2084 2406 9.927668 CCCATAAAAACATAACAAGATTTCACT 57.072 29.630 0.00 0.00 0.00 3.41
2158 2484 8.560374 GTGCTACCTGAATCCAGAATAAATTAC 58.440 37.037 0.00 0.00 43.02 1.89
2206 2534 3.972403 TCGCCTTTTTCTTTGCCTTTAC 58.028 40.909 0.00 0.00 0.00 2.01
2208 2536 3.549221 CGCCTTTTTCTTTGCCTTTACGA 60.549 43.478 0.00 0.00 0.00 3.43
2210 2538 5.618195 CGCCTTTTTCTTTGCCTTTACGATA 60.618 40.000 0.00 0.00 0.00 2.92
2231 2559 8.383175 ACGATATTGATCAATTAACCCATACCT 58.617 33.333 25.26 0.50 32.50 3.08
2388 2937 8.420374 ACATATTGTTTCGTATACACTCCTTG 57.580 34.615 3.32 0.00 0.00 3.61
2403 2952 0.099968 CCTTGATGCCAATGCGTGAG 59.900 55.000 0.00 0.00 41.78 3.51
2409 2958 4.170062 CCAATGCGTGAGGCTGCG 62.170 66.667 0.00 0.00 44.05 5.18
2445 3057 0.804989 CTCGCGCCTTTTTCCATTCT 59.195 50.000 0.00 0.00 0.00 2.40
2481 3093 6.227298 TCCAGTCTCATCTTCAATAAGGAC 57.773 41.667 0.00 0.00 33.22 3.85
2533 3208 7.174946 GTGGAGAGAATTTTGACCACAAGATTA 59.825 37.037 15.69 0.00 44.58 1.75
2673 3348 1.555533 GGGATCGAAGAACTCACCCTT 59.444 52.381 0.00 0.00 43.58 3.95
2679 3405 2.288825 CGAAGAACTCACCCTTGTGCTA 60.289 50.000 0.00 0.00 42.46 3.49
2769 3495 3.869832 GGTACCTTAGACTCCGATTTTGC 59.130 47.826 4.06 0.00 0.00 3.68
2782 3508 3.955543 TTTTGCGCCCTCCATCCCC 62.956 63.158 4.18 0.00 0.00 4.81
2837 3563 1.337728 CCTGTATCTGTGGCGTGTGAA 60.338 52.381 0.00 0.00 0.00 3.18
3069 3804 3.458189 AGACTTCTCACTTGTGGAAACG 58.542 45.455 0.64 0.00 0.00 3.60
3075 3810 0.591236 CACTTGTGGAAACGTTGCCG 60.591 55.000 20.61 8.54 40.83 5.69
3162 3897 7.285401 TCCCTTATGCCAAATATTGAAACTCTC 59.715 37.037 0.00 0.00 0.00 3.20
3207 3946 9.256228 GAGGTATATATTCTCCACAATGTAGGA 57.744 37.037 0.00 4.88 0.00 2.94
3267 4024 8.390921 TCTCATACCTGGTGTATCTGATACATA 58.609 37.037 27.72 19.87 46.39 2.29
3462 4223 1.165270 AAGGCGGTAATGCTGTTCAC 58.835 50.000 0.00 0.00 34.52 3.18
3504 4265 1.753078 CGATCAGTCTGGGTCCGGA 60.753 63.158 0.00 0.00 0.00 5.14
3839 4607 3.911868 TGGCTATCAAAACACACATTGC 58.088 40.909 0.00 0.00 0.00 3.56
3982 5025 9.679661 TCTAAATGAGCCATGTTTTGTATCTTA 57.320 29.630 0.00 0.00 0.00 2.10
4006 5049 5.099042 ACCATTTATGTGTGACCCTACTC 57.901 43.478 0.00 0.00 0.00 2.59
4178 5222 2.995466 ACCTTTGATGTTGTCGCATG 57.005 45.000 0.00 0.00 0.00 4.06
4180 5224 3.407698 ACCTTTGATGTTGTCGCATGTA 58.592 40.909 0.00 0.00 0.00 2.29
4272 5316 3.624861 GGCCAATGTTGAGATACTCAGTG 59.375 47.826 0.00 0.00 41.75 3.66
4654 5702 0.046242 TTCTCAGGGATGATGGGGGT 59.954 55.000 0.00 0.00 0.00 4.95
4716 5764 1.345741 CCCTCTTCTCACTTGTGAGCA 59.654 52.381 21.95 13.10 35.97 4.26
4912 5960 2.225727 TGGCTAGATCTATGGCTGGGAT 60.226 50.000 19.23 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 241 1.064463 ACAACCCCTCCTGCACATATG 60.064 52.381 0.00 0.00 0.00 1.78
241 243 0.618458 GACAACCCCTCCTGCACATA 59.382 55.000 0.00 0.00 0.00 2.29
264 266 1.750399 ATGGGCTGGCACATCGAAC 60.750 57.895 4.30 0.00 34.53 3.95
279 281 0.802494 AAAAAGCCGAGCGTACATGG 59.198 50.000 0.00 0.00 0.00 3.66
357 363 7.274250 CAGAAAAACCACAGAAAACAGAGAAAG 59.726 37.037 0.00 0.00 0.00 2.62
360 366 5.710099 ACAGAAAAACCACAGAAAACAGAGA 59.290 36.000 0.00 0.00 0.00 3.10
376 382 2.958355 CAGCCCCAGAAAGACAGAAAAA 59.042 45.455 0.00 0.00 0.00 1.94
381 387 1.001641 CCCAGCCCCAGAAAGACAG 60.002 63.158 0.00 0.00 0.00 3.51
383 389 0.178961 AAACCCAGCCCCAGAAAGAC 60.179 55.000 0.00 0.00 0.00 3.01
385 391 0.681175 CAAAACCCAGCCCCAGAAAG 59.319 55.000 0.00 0.00 0.00 2.62
387 393 0.469144 GACAAAACCCAGCCCCAGAA 60.469 55.000 0.00 0.00 0.00 3.02
389 395 1.908299 GGACAAAACCCAGCCCCAG 60.908 63.158 0.00 0.00 0.00 4.45
426 436 4.832823 ACAATTTCGAAAAAGTCCTGGGAT 59.167 37.500 15.66 0.00 0.00 3.85
430 440 6.529829 TGTTCAACAATTTCGAAAAAGTCCTG 59.470 34.615 15.66 11.80 0.00 3.86
431 441 6.626302 TGTTCAACAATTTCGAAAAAGTCCT 58.374 32.000 15.66 0.01 0.00 3.85
432 442 6.879188 TGTTCAACAATTTCGAAAAAGTCC 57.121 33.333 15.66 6.42 0.00 3.85
433 443 9.753669 AAAATGTTCAACAATTTCGAAAAAGTC 57.246 25.926 15.66 5.35 25.43 3.01
487 497 3.199677 CCACACCACGACTAGTCAAAAA 58.800 45.455 22.37 0.00 0.00 1.94
521 531 3.942377 ATGCGATGCACTGGCCCAA 62.942 57.895 0.00 0.00 43.04 4.12
615 626 6.248629 GCTAACAAGTGCGAGTAATTTTTAGC 59.751 38.462 13.23 13.23 33.20 3.09
674 685 1.717645 CCGTTTTGTACTCGAGTTCCG 59.282 52.381 25.44 16.14 40.25 4.30
722 733 1.411977 TCTTATCCAGCTCTGCTCTGC 59.588 52.381 0.00 0.00 36.40 4.26
740 751 1.650528 CTCCTTCAGACCCCAACTCT 58.349 55.000 0.00 0.00 0.00 3.24
749 760 0.673956 GTTTCGCCCCTCCTTCAGAC 60.674 60.000 0.00 0.00 0.00 3.51
765 776 1.407618 GCCAAGAAACCACTTCCGTTT 59.592 47.619 0.00 0.00 36.16 3.60
772 783 1.272147 GGATCTGGCCAAGAAACCACT 60.272 52.381 7.01 0.00 38.79 4.00
782 793 2.123468 TCGGATCGGATCTGGCCA 60.123 61.111 23.09 4.71 36.31 5.36
810 821 0.038159 AGAGTGGCCGACGAAAGAAG 60.038 55.000 0.00 0.00 0.00 2.85
814 825 1.585006 GAGAGAGTGGCCGACGAAA 59.415 57.895 0.00 0.00 0.00 3.46
838 849 4.200838 AGAGCTTTCAGTAAAGGAGCTC 57.799 45.455 14.04 14.04 42.07 4.09
839 850 5.483811 GTTAGAGCTTTCAGTAAAGGAGCT 58.516 41.667 0.00 0.00 42.07 4.09
840 851 4.632251 GGTTAGAGCTTTCAGTAAAGGAGC 59.368 45.833 0.00 0.00 42.07 4.70
841 852 6.043854 AGGTTAGAGCTTTCAGTAAAGGAG 57.956 41.667 0.00 0.00 42.07 3.69
842 853 6.435292 AAGGTTAGAGCTTTCAGTAAAGGA 57.565 37.500 0.00 0.00 42.07 3.36
843 854 7.511959 AAAAGGTTAGAGCTTTCAGTAAAGG 57.488 36.000 5.69 0.00 44.21 3.11
886 897 0.179000 CCCACCTGAATCTTCTCCCG 59.821 60.000 0.00 0.00 0.00 5.14
893 904 4.104738 TCTTGAGAAAACCCACCTGAATCT 59.895 41.667 0.00 0.00 0.00 2.40
894 905 4.398319 TCTTGAGAAAACCCACCTGAATC 58.602 43.478 0.00 0.00 0.00 2.52
895 906 4.104738 TCTCTTGAGAAAACCCACCTGAAT 59.895 41.667 0.00 0.00 0.00 2.57
907 918 0.460284 GCGCCCGATCTCTTGAGAAA 60.460 55.000 0.00 0.00 0.00 2.52
908 919 1.141881 GCGCCCGATCTCTTGAGAA 59.858 57.895 0.00 0.00 0.00 2.87
909 920 2.786495 GGCGCCCGATCTCTTGAGA 61.786 63.158 18.11 2.59 0.00 3.27
910 921 2.279784 GGCGCCCGATCTCTTGAG 60.280 66.667 18.11 0.00 0.00 3.02
911 922 1.040893 TAAGGCGCCCGATCTCTTGA 61.041 55.000 26.15 0.00 0.00 3.02
913 924 0.318762 GATAAGGCGCCCGATCTCTT 59.681 55.000 26.15 11.80 0.00 2.85
914 925 0.540830 AGATAAGGCGCCCGATCTCT 60.541 55.000 27.17 18.17 29.30 3.10
930 970 4.951715 TGGATATGCAAGAACAAAGCAGAT 59.048 37.500 0.00 0.00 42.25 2.90
939 979 5.700832 TCGTTATGGATGGATATGCAAGAAC 59.299 40.000 0.00 0.00 38.19 3.01
946 986 4.444876 GGGGGATCGTTATGGATGGATATG 60.445 50.000 0.00 0.00 0.00 1.78
969 1011 2.475111 TGCGCTACGACAGAAGAAAAAG 59.525 45.455 9.73 0.00 0.00 2.27
979 1021 4.111016 CCGACCTGCGCTACGACA 62.111 66.667 9.73 0.00 39.11 4.35
984 1026 3.147595 ATGAGCCGACCTGCGCTA 61.148 61.111 9.73 0.00 39.11 4.26
1009 1051 3.633065 CCCTTTCTTTTACCCGTTGTTGA 59.367 43.478 0.00 0.00 0.00 3.18
1064 1109 1.597742 TGCTTTGCCAGACTGAGAAC 58.402 50.000 3.32 0.00 0.00 3.01
1110 1155 1.399714 CATCAGTAGCCGGTACCTCA 58.600 55.000 10.90 0.00 31.06 3.86
1120 1165 4.194640 TCAGAATTCAAGGCATCAGTAGC 58.805 43.478 8.44 0.00 0.00 3.58
1125 1170 3.358118 TGCATCAGAATTCAAGGCATCA 58.642 40.909 13.89 0.00 0.00 3.07
1150 1195 9.440773 TCTCTACTCTGTTTGTAAATCGTACTA 57.559 33.333 0.00 0.00 0.00 1.82
1152 1197 9.224058 GATCTCTACTCTGTTTGTAAATCGTAC 57.776 37.037 0.00 0.00 0.00 3.67
1153 1198 9.175312 AGATCTCTACTCTGTTTGTAAATCGTA 57.825 33.333 0.00 0.00 0.00 3.43
1162 1401 6.696411 ACCAGAAAGATCTCTACTCTGTTTG 58.304 40.000 16.62 8.81 35.72 2.93
1166 1405 5.448496 CGTGACCAGAAAGATCTCTACTCTG 60.448 48.000 13.34 13.34 36.54 3.35
1171 1410 3.695060 GGACGTGACCAGAAAGATCTCTA 59.305 47.826 0.00 0.00 32.03 2.43
1173 1412 2.494073 AGGACGTGACCAGAAAGATCTC 59.506 50.000 0.00 0.00 32.03 2.75
1178 1417 2.296471 ACACTAGGACGTGACCAGAAAG 59.704 50.000 0.00 0.00 38.27 2.62
1179 1418 2.313317 ACACTAGGACGTGACCAGAAA 58.687 47.619 0.00 0.00 38.27 2.52
1180 1419 1.991121 ACACTAGGACGTGACCAGAA 58.009 50.000 0.00 0.00 38.27 3.02
1181 1420 1.991121 AACACTAGGACGTGACCAGA 58.009 50.000 0.00 0.00 38.27 3.86
1182 1421 2.814280 AAACACTAGGACGTGACCAG 57.186 50.000 0.00 0.00 38.27 4.00
1183 1422 3.547054 AAAAACACTAGGACGTGACCA 57.453 42.857 0.00 0.00 38.27 4.02
1202 1441 6.607198 AGGATGTGACCAGAAAGAAAGAAAAA 59.393 34.615 0.00 0.00 0.00 1.94
1203 1442 6.129179 AGGATGTGACCAGAAAGAAAGAAAA 58.871 36.000 0.00 0.00 0.00 2.29
1204 1443 5.694995 AGGATGTGACCAGAAAGAAAGAAA 58.305 37.500 0.00 0.00 0.00 2.52
1205 1444 5.310409 AGGATGTGACCAGAAAGAAAGAA 57.690 39.130 0.00 0.00 0.00 2.52
1206 1445 4.982241 AGGATGTGACCAGAAAGAAAGA 57.018 40.909 0.00 0.00 0.00 2.52
1207 1446 6.656693 ACATTAGGATGTGACCAGAAAGAAAG 59.343 38.462 0.00 0.00 44.64 2.62
1208 1447 6.542821 ACATTAGGATGTGACCAGAAAGAAA 58.457 36.000 0.00 0.00 44.64 2.52
1209 1448 6.126863 ACATTAGGATGTGACCAGAAAGAA 57.873 37.500 0.00 0.00 44.64 2.52
1210 1449 5.762179 ACATTAGGATGTGACCAGAAAGA 57.238 39.130 0.00 0.00 44.64 2.52
1211 1450 5.939883 TCAACATTAGGATGTGACCAGAAAG 59.060 40.000 0.00 0.00 45.58 2.62
1244 1483 5.826208 ACTCATTCAGTAAAAACCGTCCTTT 59.174 36.000 0.00 0.00 31.37 3.11
1245 1484 5.238650 CACTCATTCAGTAAAAACCGTCCTT 59.761 40.000 0.00 0.00 32.21 3.36
1246 1485 4.755123 CACTCATTCAGTAAAAACCGTCCT 59.245 41.667 0.00 0.00 32.21 3.85
1290 1529 2.171725 GGTAGCACTAAAGCGGCCG 61.172 63.158 24.05 24.05 40.15 6.13
1291 1530 2.171725 CGGTAGCACTAAAGCGGCC 61.172 63.158 0.00 0.00 40.15 6.13
1293 1532 1.922545 GTTACGGTAGCACTAAAGCGG 59.077 52.381 0.00 0.00 40.70 5.52
1294 1533 2.597305 CAGTTACGGTAGCACTAAAGCG 59.403 50.000 4.81 0.00 42.03 4.68
1295 1534 2.928116 CCAGTTACGGTAGCACTAAAGC 59.072 50.000 4.81 0.00 0.00 3.51
1298 1537 2.892852 ACACCAGTTACGGTAGCACTAA 59.107 45.455 4.81 0.00 37.07 2.24
1301 1540 1.000060 TCACACCAGTTACGGTAGCAC 60.000 52.381 4.81 0.00 37.07 4.40
1303 1569 2.667473 ATCACACCAGTTACGGTAGC 57.333 50.000 0.00 0.00 37.07 3.58
1308 1574 6.507456 GCGATAACTAAATCACACCAGTTACG 60.507 42.308 0.00 0.00 36.57 3.18
1315 1581 5.523916 AGATGTGCGATAACTAAATCACACC 59.476 40.000 0.00 0.00 37.88 4.16
1321 1587 9.935241 ATGAATCTAGATGTGCGATAACTAAAT 57.065 29.630 5.86 0.00 0.00 1.40
1328 1594 6.393171 CAGGAATGAATCTAGATGTGCGATA 58.607 40.000 5.86 0.00 0.00 2.92
1331 1597 3.744942 CCAGGAATGAATCTAGATGTGCG 59.255 47.826 5.86 0.00 0.00 5.34
1332 1598 3.501445 GCCAGGAATGAATCTAGATGTGC 59.499 47.826 5.86 0.00 0.00 4.57
1334 1600 3.244353 CGGCCAGGAATGAATCTAGATGT 60.244 47.826 5.86 0.00 0.00 3.06
1336 1602 3.007398 GTCGGCCAGGAATGAATCTAGAT 59.993 47.826 2.24 0.00 0.00 1.98
1337 1603 2.365617 GTCGGCCAGGAATGAATCTAGA 59.634 50.000 2.24 0.00 0.00 2.43
1338 1604 2.760374 GTCGGCCAGGAATGAATCTAG 58.240 52.381 2.24 0.00 0.00 2.43
1339 1605 1.068588 CGTCGGCCAGGAATGAATCTA 59.931 52.381 2.24 0.00 0.00 1.98
1340 1606 0.179073 CGTCGGCCAGGAATGAATCT 60.179 55.000 2.24 0.00 0.00 2.40
1341 1607 0.179084 TCGTCGGCCAGGAATGAATC 60.179 55.000 2.24 0.00 0.00 2.52
1342 1608 0.469917 ATCGTCGGCCAGGAATGAAT 59.530 50.000 2.24 0.00 0.00 2.57
1343 1609 0.251916 AATCGTCGGCCAGGAATGAA 59.748 50.000 2.24 0.00 0.00 2.57
1344 1610 0.179084 GAATCGTCGGCCAGGAATGA 60.179 55.000 2.24 0.00 0.00 2.57
1345 1611 0.461870 TGAATCGTCGGCCAGGAATG 60.462 55.000 2.24 0.00 0.00 2.67
1346 1612 0.469917 ATGAATCGTCGGCCAGGAAT 59.530 50.000 2.24 0.00 0.00 3.01
1347 1613 0.251916 AATGAATCGTCGGCCAGGAA 59.748 50.000 2.24 0.00 0.00 3.36
1348 1614 0.179084 GAATGAATCGTCGGCCAGGA 60.179 55.000 2.24 1.49 0.00 3.86
1349 1615 1.160329 GGAATGAATCGTCGGCCAGG 61.160 60.000 2.24 0.00 0.00 4.45
1350 1616 1.490693 CGGAATGAATCGTCGGCCAG 61.491 60.000 2.24 0.00 0.00 4.85
1351 1617 1.520564 CGGAATGAATCGTCGGCCA 60.521 57.895 2.24 0.00 0.00 5.36
1352 1618 2.244651 CCGGAATGAATCGTCGGCC 61.245 63.158 0.00 0.00 34.17 6.13
1353 1619 1.227147 TCCGGAATGAATCGTCGGC 60.227 57.895 0.00 0.00 40.42 5.54
1354 1620 1.206745 CGTCCGGAATGAATCGTCGG 61.207 60.000 5.23 0.00 41.80 4.79
1355 1621 1.206745 CCGTCCGGAATGAATCGTCG 61.207 60.000 5.23 1.25 37.50 5.12
1356 1622 0.179119 ACCGTCCGGAATGAATCGTC 60.179 55.000 5.23 0.00 38.96 4.20
1357 1623 0.248289 AACCGTCCGGAATGAATCGT 59.752 50.000 5.23 0.00 38.96 3.73
1358 1624 1.365699 AAACCGTCCGGAATGAATCG 58.634 50.000 5.23 3.90 38.96 3.34
1359 1625 3.842732 AAAAACCGTCCGGAATGAATC 57.157 42.857 5.23 0.00 38.96 2.52
1360 1626 4.155280 CAGTAAAAACCGTCCGGAATGAAT 59.845 41.667 5.23 0.00 38.96 2.57
1361 1627 3.499157 CAGTAAAAACCGTCCGGAATGAA 59.501 43.478 5.23 0.00 38.96 2.57
1362 1628 3.068560 CAGTAAAAACCGTCCGGAATGA 58.931 45.455 5.23 0.00 38.96 2.57
1363 1629 2.160813 CCAGTAAAAACCGTCCGGAATG 59.839 50.000 5.23 2.05 38.96 2.67
1364 1630 2.429478 CCAGTAAAAACCGTCCGGAAT 58.571 47.619 5.23 0.00 38.96 3.01
1365 1631 1.542987 CCCAGTAAAAACCGTCCGGAA 60.543 52.381 5.23 0.00 38.96 4.30
1366 1632 0.035176 CCCAGTAAAAACCGTCCGGA 59.965 55.000 13.54 0.00 38.96 5.14
1367 1633 0.250424 ACCCAGTAAAAACCGTCCGG 60.250 55.000 3.76 3.76 42.03 5.14
1368 1634 1.596603 AACCCAGTAAAAACCGTCCG 58.403 50.000 0.00 0.00 0.00 4.79
1369 1635 2.689471 ACAAACCCAGTAAAAACCGTCC 59.311 45.455 0.00 0.00 0.00 4.79
1370 1636 3.628942 AGACAAACCCAGTAAAAACCGTC 59.371 43.478 0.00 0.00 0.00 4.79
1371 1637 3.623703 AGACAAACCCAGTAAAAACCGT 58.376 40.909 0.00 0.00 0.00 4.83
1372 1638 5.952526 ATAGACAAACCCAGTAAAAACCG 57.047 39.130 0.00 0.00 0.00 4.44
1373 1639 6.402875 CGCTATAGACAAACCCAGTAAAAACC 60.403 42.308 3.21 0.00 0.00 3.27
1374 1640 6.540205 CGCTATAGACAAACCCAGTAAAAAC 58.460 40.000 3.21 0.00 0.00 2.43
1375 1641 5.122711 GCGCTATAGACAAACCCAGTAAAAA 59.877 40.000 3.21 0.00 0.00 1.94
1376 1642 4.632688 GCGCTATAGACAAACCCAGTAAAA 59.367 41.667 3.21 0.00 0.00 1.52
1377 1643 4.186159 GCGCTATAGACAAACCCAGTAAA 58.814 43.478 3.21 0.00 0.00 2.01
1378 1644 3.196039 TGCGCTATAGACAAACCCAGTAA 59.804 43.478 9.73 0.00 0.00 2.24
1379 1645 2.761767 TGCGCTATAGACAAACCCAGTA 59.238 45.455 9.73 0.00 0.00 2.74
1380 1646 1.553248 TGCGCTATAGACAAACCCAGT 59.447 47.619 9.73 0.00 0.00 4.00
1381 1647 2.309528 TGCGCTATAGACAAACCCAG 57.690 50.000 9.73 0.00 0.00 4.45
1382 1648 2.434336 AGATGCGCTATAGACAAACCCA 59.566 45.455 9.73 0.00 0.00 4.51
1383 1649 3.113260 AGATGCGCTATAGACAAACCC 57.887 47.619 9.73 0.00 0.00 4.11
1384 1650 5.122512 TCTAGATGCGCTATAGACAAACC 57.877 43.478 9.73 0.00 0.00 3.27
1385 1651 6.088749 CACATCTAGATGCGCTATAGACAAAC 59.911 42.308 28.86 0.73 42.39 2.93
1386 1652 6.152379 CACATCTAGATGCGCTATAGACAAA 58.848 40.000 28.86 0.00 42.39 2.83
1387 1653 5.703876 CACATCTAGATGCGCTATAGACAA 58.296 41.667 28.86 0.00 42.39 3.18
1388 1654 4.379918 GCACATCTAGATGCGCTATAGACA 60.380 45.833 29.87 0.81 42.01 3.41
1389 1655 4.101942 GCACATCTAGATGCGCTATAGAC 58.898 47.826 29.87 7.32 42.01 2.59
1390 1656 3.129462 GGCACATCTAGATGCGCTATAGA 59.871 47.826 33.33 13.60 44.02 1.98
1391 1657 3.130164 AGGCACATCTAGATGCGCTATAG 59.870 47.826 33.33 16.86 44.02 1.31
1392 1658 3.092301 AGGCACATCTAGATGCGCTATA 58.908 45.455 33.33 0.00 44.02 1.31
1393 1659 1.898472 AGGCACATCTAGATGCGCTAT 59.102 47.619 33.33 23.73 44.02 2.97
1394 1660 1.332195 AGGCACATCTAGATGCGCTA 58.668 50.000 33.33 0.00 44.02 4.26
1395 1661 0.467384 AAGGCACATCTAGATGCGCT 59.533 50.000 33.33 21.69 44.02 5.92
1396 1662 2.064762 CTAAGGCACATCTAGATGCGC 58.935 52.381 29.50 29.50 43.88 6.09
1397 1663 3.377346 ACTAAGGCACATCTAGATGCG 57.623 47.619 28.86 22.04 43.02 4.73
1398 1664 6.348050 GCAATAACTAAGGCACATCTAGATGC 60.348 42.308 28.86 19.37 42.39 3.91
1399 1665 6.707608 TGCAATAACTAAGGCACATCTAGATG 59.292 38.462 27.63 27.63 44.15 2.90
1400 1666 6.830912 TGCAATAACTAAGGCACATCTAGAT 58.169 36.000 0.00 0.00 0.00 1.98
1401 1667 6.233905 TGCAATAACTAAGGCACATCTAGA 57.766 37.500 0.00 0.00 0.00 2.43
1409 1675 6.316140 CACTTAGATGTGCAATAACTAAGGCA 59.684 38.462 22.21 2.55 42.10 4.75
1410 1676 6.538742 TCACTTAGATGTGCAATAACTAAGGC 59.461 38.462 22.21 0.00 42.10 4.35
1411 1677 7.549134 TGTCACTTAGATGTGCAATAACTAAGG 59.451 37.037 22.21 15.42 42.10 2.69
1412 1678 8.383619 GTGTCACTTAGATGTGCAATAACTAAG 58.616 37.037 19.21 19.21 42.89 2.18
1413 1679 7.875554 TGTGTCACTTAGATGTGCAATAACTAA 59.124 33.333 4.27 0.00 37.81 2.24
1414 1680 7.382898 TGTGTCACTTAGATGTGCAATAACTA 58.617 34.615 4.27 0.00 37.81 2.24
1415 1681 6.230472 TGTGTCACTTAGATGTGCAATAACT 58.770 36.000 4.27 0.00 37.81 2.24
1416 1682 6.480524 TGTGTCACTTAGATGTGCAATAAC 57.519 37.500 4.27 0.00 37.81 1.89
1417 1683 6.348458 GCTTGTGTCACTTAGATGTGCAATAA 60.348 38.462 4.27 0.00 37.81 1.40
1418 1684 5.122239 GCTTGTGTCACTTAGATGTGCAATA 59.878 40.000 4.27 0.00 37.81 1.90
1419 1685 4.083110 GCTTGTGTCACTTAGATGTGCAAT 60.083 41.667 4.27 0.00 37.81 3.56
1420 1686 3.250762 GCTTGTGTCACTTAGATGTGCAA 59.749 43.478 4.27 0.00 37.81 4.08
1421 1687 2.807967 GCTTGTGTCACTTAGATGTGCA 59.192 45.455 4.27 0.00 37.81 4.57
1422 1688 2.807967 TGCTTGTGTCACTTAGATGTGC 59.192 45.455 4.27 0.00 37.81 4.57
1423 1689 4.612259 GCTTGCTTGTGTCACTTAGATGTG 60.612 45.833 4.27 0.00 39.15 3.21
1424 1690 3.499918 GCTTGCTTGTGTCACTTAGATGT 59.500 43.478 4.27 0.00 0.00 3.06
1425 1691 3.499537 TGCTTGCTTGTGTCACTTAGATG 59.500 43.478 4.27 0.00 0.00 2.90
1426 1692 3.743521 TGCTTGCTTGTGTCACTTAGAT 58.256 40.909 4.27 0.00 0.00 1.98
1427 1693 3.192541 TGCTTGCTTGTGTCACTTAGA 57.807 42.857 4.27 0.00 0.00 2.10
1428 1694 4.931601 TCTATGCTTGCTTGTGTCACTTAG 59.068 41.667 4.27 3.19 0.00 2.18
1429 1695 4.893608 TCTATGCTTGCTTGTGTCACTTA 58.106 39.130 4.27 0.00 0.00 2.24
1430 1696 3.743521 TCTATGCTTGCTTGTGTCACTT 58.256 40.909 4.27 0.00 0.00 3.16
1431 1697 3.407424 TCTATGCTTGCTTGTGTCACT 57.593 42.857 4.27 0.00 0.00 3.41
1432 1698 4.470462 CTTTCTATGCTTGCTTGTGTCAC 58.530 43.478 0.00 0.00 0.00 3.67
1433 1699 3.503363 CCTTTCTATGCTTGCTTGTGTCA 59.497 43.478 0.00 0.00 0.00 3.58
1434 1700 3.753272 TCCTTTCTATGCTTGCTTGTGTC 59.247 43.478 0.00 0.00 0.00 3.67
1435 1701 3.754965 TCCTTTCTATGCTTGCTTGTGT 58.245 40.909 0.00 0.00 0.00 3.72
1436 1702 4.771590 TTCCTTTCTATGCTTGCTTGTG 57.228 40.909 0.00 0.00 0.00 3.33
1437 1703 5.789643 TTTTCCTTTCTATGCTTGCTTGT 57.210 34.783 0.00 0.00 0.00 3.16
1438 1704 8.246180 TCTATTTTTCCTTTCTATGCTTGCTTG 58.754 33.333 0.00 0.00 0.00 4.01
1439 1705 8.353423 TCTATTTTTCCTTTCTATGCTTGCTT 57.647 30.769 0.00 0.00 0.00 3.91
1440 1706 7.944729 TCTATTTTTCCTTTCTATGCTTGCT 57.055 32.000 0.00 0.00 0.00 3.91
1441 1707 8.986477 TTTCTATTTTTCCTTTCTATGCTTGC 57.014 30.769 0.00 0.00 0.00 4.01
1478 1744 3.767131 TCTTACATGAAGATCCGTGTGGA 59.233 43.478 0.00 3.66 39.36 4.02
1479 1745 4.123497 TCTTACATGAAGATCCGTGTGG 57.877 45.455 0.00 1.86 39.36 4.17
1505 1771 9.314133 AGTATTGCACATCTAAGTCCTATATCA 57.686 33.333 0.00 0.00 0.00 2.15
1509 1775 9.935241 CATAAGTATTGCACATCTAAGTCCTAT 57.065 33.333 0.00 0.00 0.00 2.57
1510 1776 8.367911 CCATAAGTATTGCACATCTAAGTCCTA 58.632 37.037 0.00 0.00 0.00 2.94
1511 1777 7.220030 CCATAAGTATTGCACATCTAAGTCCT 58.780 38.462 0.00 0.00 0.00 3.85
1512 1778 6.073003 GCCATAAGTATTGCACATCTAAGTCC 60.073 42.308 0.00 0.00 0.00 3.85
1513 1779 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
1514 1780 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
1515 1781 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
1523 1789 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
1524 1790 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
1550 1816 7.586714 ATTGCTAAATCAGTTTTGCTAAAGC 57.413 32.000 8.33 0.00 43.45 3.51
1553 1819 9.840427 GAGTAATTGCTAAATCAGTTTTGCTAA 57.160 29.630 0.00 3.28 43.45 3.09
1554 1820 8.458843 GGAGTAATTGCTAAATCAGTTTTGCTA 58.541 33.333 0.00 2.54 43.45 3.49
1555 1821 7.315890 GGAGTAATTGCTAAATCAGTTTTGCT 58.684 34.615 0.00 0.00 43.45 3.91
1556 1822 6.531594 GGGAGTAATTGCTAAATCAGTTTTGC 59.468 38.462 0.00 1.39 43.39 3.68
1557 1823 7.830739 AGGGAGTAATTGCTAAATCAGTTTTG 58.169 34.615 0.00 0.00 0.00 2.44
1558 1824 7.122799 GGAGGGAGTAATTGCTAAATCAGTTTT 59.877 37.037 0.00 0.00 0.00 2.43
1559 1825 6.603599 GGAGGGAGTAATTGCTAAATCAGTTT 59.396 38.462 0.00 0.00 0.00 2.66
1560 1826 6.122964 GGAGGGAGTAATTGCTAAATCAGTT 58.877 40.000 0.00 0.00 0.00 3.16
1561 1827 5.685075 CGGAGGGAGTAATTGCTAAATCAGT 60.685 44.000 0.00 0.00 0.00 3.41
1562 1828 4.752101 CGGAGGGAGTAATTGCTAAATCAG 59.248 45.833 0.00 0.00 0.00 2.90
1563 1829 4.163458 ACGGAGGGAGTAATTGCTAAATCA 59.837 41.667 0.00 0.00 0.00 2.57
1564 1830 4.704965 ACGGAGGGAGTAATTGCTAAATC 58.295 43.478 0.00 0.00 0.00 2.17
1565 1831 4.772886 ACGGAGGGAGTAATTGCTAAAT 57.227 40.909 0.00 0.00 0.00 1.40
1566 1832 4.224370 AGAACGGAGGGAGTAATTGCTAAA 59.776 41.667 0.00 0.00 0.00 1.85
1567 1833 3.773119 AGAACGGAGGGAGTAATTGCTAA 59.227 43.478 0.00 0.00 0.00 3.09
1568 1834 3.371965 AGAACGGAGGGAGTAATTGCTA 58.628 45.455 0.00 0.00 0.00 3.49
1569 1835 2.188817 AGAACGGAGGGAGTAATTGCT 58.811 47.619 0.00 0.00 0.00 3.91
1570 1836 2.693267 AGAACGGAGGGAGTAATTGC 57.307 50.000 0.00 0.00 0.00 3.56
1571 1837 5.246307 AGAAAAGAACGGAGGGAGTAATTG 58.754 41.667 0.00 0.00 0.00 2.32
1572 1838 5.500546 AGAAAAGAACGGAGGGAGTAATT 57.499 39.130 0.00 0.00 0.00 1.40
1573 1839 5.500546 AAGAAAAGAACGGAGGGAGTAAT 57.499 39.130 0.00 0.00 0.00 1.89
1574 1840 4.968971 AAGAAAAGAACGGAGGGAGTAA 57.031 40.909 0.00 0.00 0.00 2.24
1575 1841 7.147776 CCTTATAAGAAAAGAACGGAGGGAGTA 60.148 40.741 14.28 0.00 0.00 2.59
1576 1842 6.351966 CCTTATAAGAAAAGAACGGAGGGAGT 60.352 42.308 14.28 0.00 0.00 3.85
1577 1843 6.049790 CCTTATAAGAAAAGAACGGAGGGAG 58.950 44.000 14.28 0.00 0.00 4.30
1578 1844 5.486419 ACCTTATAAGAAAAGAACGGAGGGA 59.514 40.000 14.28 0.00 0.00 4.20
1579 1845 5.585047 CACCTTATAAGAAAAGAACGGAGGG 59.415 44.000 14.28 0.00 0.00 4.30
1580 1846 5.064834 GCACCTTATAAGAAAAGAACGGAGG 59.935 44.000 14.28 0.00 0.00 4.30
1581 1847 5.642063 TGCACCTTATAAGAAAAGAACGGAG 59.358 40.000 14.28 0.00 0.00 4.63
1582 1848 5.553123 TGCACCTTATAAGAAAAGAACGGA 58.447 37.500 14.28 0.00 0.00 4.69
1583 1849 5.411669 ACTGCACCTTATAAGAAAAGAACGG 59.588 40.000 14.28 4.06 0.00 4.44
1584 1850 6.481954 ACTGCACCTTATAAGAAAAGAACG 57.518 37.500 14.28 0.00 0.00 3.95
1585 1851 7.015877 CGAACTGCACCTTATAAGAAAAGAAC 58.984 38.462 14.28 5.35 0.00 3.01
1609 1875 0.243636 GGTTGGATTTTGGACAGCCG 59.756 55.000 0.00 0.00 36.79 5.52
1610 1876 1.337118 TGGTTGGATTTTGGACAGCC 58.663 50.000 0.00 0.00 36.22 4.85
1611 1877 3.467374 TTTGGTTGGATTTTGGACAGC 57.533 42.857 0.00 0.00 0.00 4.40
1612 1878 5.466393 GTGAATTTGGTTGGATTTTGGACAG 59.534 40.000 0.00 0.00 0.00 3.51
1613 1879 5.363939 GTGAATTTGGTTGGATTTTGGACA 58.636 37.500 0.00 0.00 0.00 4.02
1614 1880 4.447389 CGTGAATTTGGTTGGATTTTGGAC 59.553 41.667 0.00 0.00 0.00 4.02
1615 1881 4.626042 CGTGAATTTGGTTGGATTTTGGA 58.374 39.130 0.00 0.00 0.00 3.53
1616 1882 3.186205 GCGTGAATTTGGTTGGATTTTGG 59.814 43.478 0.00 0.00 0.00 3.28
1618 1884 3.070878 AGGCGTGAATTTGGTTGGATTTT 59.929 39.130 0.00 0.00 0.00 1.82
1619 1885 2.632512 AGGCGTGAATTTGGTTGGATTT 59.367 40.909 0.00 0.00 0.00 2.17
1620 1886 2.247358 AGGCGTGAATTTGGTTGGATT 58.753 42.857 0.00 0.00 0.00 3.01
1621 1887 1.923356 AGGCGTGAATTTGGTTGGAT 58.077 45.000 0.00 0.00 0.00 3.41
1622 1888 1.339610 CAAGGCGTGAATTTGGTTGGA 59.660 47.619 0.00 0.00 0.00 3.53
1623 1889 1.339610 TCAAGGCGTGAATTTGGTTGG 59.660 47.619 0.00 0.00 31.51 3.77
1624 1890 2.393764 GTCAAGGCGTGAATTTGGTTG 58.606 47.619 4.28 0.00 38.23 3.77
1625 1891 1.339929 GGTCAAGGCGTGAATTTGGTT 59.660 47.619 4.28 0.00 38.23 3.67
1626 1892 0.958822 GGTCAAGGCGTGAATTTGGT 59.041 50.000 4.28 0.00 38.23 3.67
1627 1893 0.958091 TGGTCAAGGCGTGAATTTGG 59.042 50.000 4.28 0.00 38.23 3.28
1628 1894 2.223688 TGTTGGTCAAGGCGTGAATTTG 60.224 45.455 4.28 0.00 38.23 2.32
1629 1895 2.028130 TGTTGGTCAAGGCGTGAATTT 58.972 42.857 4.28 0.00 38.23 1.82
1630 1896 1.686355 TGTTGGTCAAGGCGTGAATT 58.314 45.000 4.28 0.00 38.23 2.17
1631 1897 1.686355 TTGTTGGTCAAGGCGTGAAT 58.314 45.000 4.28 0.00 38.23 2.57
1632 1898 1.133407 GTTTGTTGGTCAAGGCGTGAA 59.867 47.619 4.28 0.00 38.23 3.18
1633 1899 0.736053 GTTTGTTGGTCAAGGCGTGA 59.264 50.000 0.00 0.00 37.35 4.35
1634 1900 0.738389 AGTTTGTTGGTCAAGGCGTG 59.262 50.000 0.00 0.00 37.35 5.34
1635 1901 0.738389 CAGTTTGTTGGTCAAGGCGT 59.262 50.000 0.00 0.00 37.35 5.68
1636 1902 0.738389 ACAGTTTGTTGGTCAAGGCG 59.262 50.000 0.00 0.00 37.35 5.52
1637 1903 2.024414 AGACAGTTTGTTGGTCAAGGC 58.976 47.619 0.00 0.00 37.35 4.35
1638 1904 5.828299 TTTAGACAGTTTGTTGGTCAAGG 57.172 39.130 0.00 0.00 37.35 3.61
1639 1905 7.312899 ACTTTTTAGACAGTTTGTTGGTCAAG 58.687 34.615 0.00 0.00 37.35 3.02
1640 1906 7.222000 ACTTTTTAGACAGTTTGTTGGTCAA 57.778 32.000 0.00 0.00 34.04 3.18
1641 1907 6.827586 ACTTTTTAGACAGTTTGTTGGTCA 57.172 33.333 0.00 0.00 34.04 4.02
1642 1908 7.699391 GGTAACTTTTTAGACAGTTTGTTGGTC 59.301 37.037 0.00 0.00 34.92 4.02
1643 1909 7.541162 GGTAACTTTTTAGACAGTTTGTTGGT 58.459 34.615 0.00 0.00 34.92 3.67
1644 1910 7.980742 GGTAACTTTTTAGACAGTTTGTTGG 57.019 36.000 0.00 0.00 34.92 3.77
1663 1929 6.090493 GTCACTTATTTCCGAACAGAGGTAAC 59.910 42.308 0.00 0.00 0.00 2.50
1664 1930 6.161381 GTCACTTATTTCCGAACAGAGGTAA 58.839 40.000 0.00 0.00 0.00 2.85
1665 1931 5.620654 CGTCACTTATTTCCGAACAGAGGTA 60.621 44.000 0.00 0.00 0.00 3.08
1666 1932 4.566987 GTCACTTATTTCCGAACAGAGGT 58.433 43.478 0.00 0.00 0.00 3.85
1667 1933 3.612860 CGTCACTTATTTCCGAACAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
1668 1934 4.235360 ACGTCACTTATTTCCGAACAGAG 58.765 43.478 0.00 0.00 0.00 3.35
1669 1935 4.247267 ACGTCACTTATTTCCGAACAGA 57.753 40.909 0.00 0.00 0.00 3.41
1670 1936 4.210537 ACAACGTCACTTATTTCCGAACAG 59.789 41.667 0.00 0.00 0.00 3.16
1671 1937 4.121317 ACAACGTCACTTATTTCCGAACA 58.879 39.130 0.00 0.00 0.00 3.18
1672 1938 4.720530 ACAACGTCACTTATTTCCGAAC 57.279 40.909 0.00 0.00 0.00 3.95
1673 1939 5.293814 TGAAACAACGTCACTTATTTCCGAA 59.706 36.000 0.00 0.00 0.00 4.30
1674 1940 4.809958 TGAAACAACGTCACTTATTTCCGA 59.190 37.500 0.00 0.00 0.00 4.55
1675 1941 5.085636 TGAAACAACGTCACTTATTTCCG 57.914 39.130 0.00 0.00 0.00 4.30
1676 1942 6.492254 AGTTGAAACAACGTCACTTATTTCC 58.508 36.000 8.60 0.00 0.00 3.13
1677 1943 9.493206 TTTAGTTGAAACAACGTCACTTATTTC 57.507 29.630 8.60 0.00 0.00 2.17
1678 1944 9.498307 CTTTAGTTGAAACAACGTCACTTATTT 57.502 29.630 8.60 0.00 0.00 1.40
1679 1945 7.642586 GCTTTAGTTGAAACAACGTCACTTATT 59.357 33.333 8.60 0.00 0.00 1.40
1680 1946 7.130269 GCTTTAGTTGAAACAACGTCACTTAT 58.870 34.615 8.60 0.00 0.00 1.73
1681 1947 6.092396 TGCTTTAGTTGAAACAACGTCACTTA 59.908 34.615 8.60 0.00 0.00 2.24
1704 1970 1.730064 TCCGAAAATAAGTGACGCTGC 59.270 47.619 0.00 0.00 0.00 5.25
1720 1986 2.749621 GTTTACTACTCCTTCCGTCCGA 59.250 50.000 0.00 0.00 0.00 4.55
1723 1989 4.217118 TCACAGTTTACTACTCCTTCCGTC 59.783 45.833 0.00 0.00 33.85 4.79
1726 1992 5.243283 TGACTCACAGTTTACTACTCCTTCC 59.757 44.000 0.00 0.00 33.85 3.46
1727 1993 6.328641 TGACTCACAGTTTACTACTCCTTC 57.671 41.667 0.00 0.00 33.85 3.46
1729 1995 5.775701 ACATGACTCACAGTTTACTACTCCT 59.224 40.000 0.00 0.00 33.85 3.69
1770 2036 6.560253 ATGCTTTTGAATACGAACTGAACT 57.440 33.333 0.00 0.00 0.00 3.01
1772 2038 6.143758 GCAAATGCTTTTGAATACGAACTGAA 59.856 34.615 24.70 0.00 44.11 3.02
1774 2040 5.836009 GCAAATGCTTTTGAATACGAACTG 58.164 37.500 24.70 0.00 44.11 3.16
1793 2059 5.426689 AGAAGATGATAGTGGTCAGCAAA 57.573 39.130 0.00 0.00 36.99 3.68
1811 2077 9.307121 CCACTATTGTCTGTTGATAGTTAGAAG 57.693 37.037 0.00 0.00 35.11 2.85
1837 2103 5.483937 AGAGTTTTGACCATTAAATTCCCCC 59.516 40.000 0.00 0.00 0.00 5.40
1838 2104 6.210584 TCAGAGTTTTGACCATTAAATTCCCC 59.789 38.462 0.00 0.00 0.00 4.81
1839 2105 7.227049 TCAGAGTTTTGACCATTAAATTCCC 57.773 36.000 0.00 0.00 0.00 3.97
1840 2106 9.710900 AAATCAGAGTTTTGACCATTAAATTCC 57.289 29.630 0.00 0.00 0.00 3.01
1846 2112 9.349713 ACTACAAAATCAGAGTTTTGACCATTA 57.650 29.630 16.31 1.03 46.78 1.90
1847 2113 8.137437 CACTACAAAATCAGAGTTTTGACCATT 58.863 33.333 16.31 0.04 46.78 3.16
1872 2138 9.834628 CGTTCCTTCTGTTAATTTTTATAAGCA 57.165 29.630 0.00 0.00 0.00 3.91
1880 2146 7.745620 ACTCATCGTTCCTTCTGTTAATTTT 57.254 32.000 0.00 0.00 0.00 1.82
1896 2163 2.287069 GCGTCATAGTGCTACTCATCGT 60.287 50.000 0.00 0.00 0.00 3.73
1900 2167 2.290916 GCTAGCGTCATAGTGCTACTCA 59.709 50.000 0.00 0.00 42.48 3.41
1903 2170 1.676057 CGCTAGCGTCATAGTGCTAC 58.324 55.000 28.66 0.00 42.48 3.58
1937 2208 8.628882 AATATGCAATCATTAATCGCATGATG 57.371 30.769 16.03 0.00 42.91 3.07
1938 2209 8.463607 TGAATATGCAATCATTAATCGCATGAT 58.536 29.630 16.03 3.01 42.91 2.45
2084 2406 8.484214 AATCCTATAACATCTAGAGCAGAACA 57.516 34.615 0.00 0.00 36.67 3.18
2158 2484 9.507280 AAAATACAGAGTTCAATGCATAAATCG 57.493 29.630 0.00 0.42 0.00 3.34
2206 2534 8.792830 AGGTATGGGTTAATTGATCAATATCG 57.207 34.615 21.00 0.00 34.60 2.92
2208 2536 9.881773 ACAAGGTATGGGTTAATTGATCAATAT 57.118 29.630 21.00 11.98 0.00 1.28
2210 2538 7.417797 GCACAAGGTATGGGTTAATTGATCAAT 60.418 37.037 15.36 15.36 33.76 2.57
2231 2559 1.821759 CCTCCACACGGTTGCACAA 60.822 57.895 0.00 0.00 0.00 3.33
2261 2802 7.981789 AGTATAACCACACAGAGTAACATCATG 59.018 37.037 0.00 0.00 0.00 3.07
2350 2897 3.689347 ACAATATGTCCTGCACACACAT 58.311 40.909 5.88 5.88 38.04 3.21
2388 2937 2.410469 GCCTCACGCATTGGCATC 59.590 61.111 0.00 0.00 45.46 3.91
2409 2958 0.247301 GAGATACGCAAGCAACACGC 60.247 55.000 0.00 0.00 45.62 5.34
2481 3093 4.543692 CACTTCTCTTCAAGCCAATTGTG 58.456 43.478 4.43 0.00 40.05 3.33
2533 3208 0.400213 TGGTTCCTGAGAATGCGGTT 59.600 50.000 0.00 0.00 33.67 4.44
2673 3348 2.565391 TCCCTTCGTTTCAGATAGCACA 59.435 45.455 0.00 0.00 0.00 4.57
2679 3405 6.715264 AGTTGTATTTTCCCTTCGTTTCAGAT 59.285 34.615 0.00 0.00 0.00 2.90
2782 3508 0.469892 AAGGGGCCAAGTTCAACTGG 60.470 55.000 4.39 0.00 0.00 4.00
2837 3563 6.540189 GCACTCTAACTCATTCCATGTAATGT 59.460 38.462 10.43 0.00 44.81 2.71
3069 3804 6.487103 CAATTCTAGTTCCTTTATCGGCAAC 58.513 40.000 0.00 0.00 0.00 4.17
3075 3810 9.129209 GTTTGTTGCAATTCTAGTTCCTTTATC 57.871 33.333 0.59 0.00 0.00 1.75
3162 3897 3.240884 CTCTCTCGATGATTGTATGGCG 58.759 50.000 0.00 0.00 0.00 5.69
3207 3946 5.419542 CATATATACGCTGGCCTACAACAT 58.580 41.667 3.32 0.00 0.00 2.71
3267 4024 1.603802 CACCTGCACAAGAACGATGTT 59.396 47.619 0.00 0.00 0.00 2.71
3462 4223 4.724074 TGGCTTTGCAGGATGAAATAAG 57.276 40.909 0.00 0.00 39.69 1.73
3839 4607 5.929992 TGAACTGTAGGTGGAACTTTATTCG 59.070 40.000 0.00 0.00 36.74 3.34
3982 5025 6.615726 AGAGTAGGGTCACACATAAATGGTAT 59.384 38.462 0.00 0.00 0.00 2.73
4047 5091 5.765510 ACATGCCTCACCAGGAAAAATATA 58.234 37.500 0.00 0.00 43.65 0.86
4178 5222 6.796705 ATATTATAAAGCAACCGCACCTAC 57.203 37.500 0.00 0.00 42.27 3.18
4180 5224 7.811117 TTTATATTATAAAGCAACCGCACCT 57.189 32.000 5.01 0.00 42.27 4.00
4315 5359 3.044059 GCACTAAGCTTGGCTGCCG 62.044 63.158 19.39 1.19 39.62 5.69
4379 5424 3.421844 AGAGTTGTATTCCTTGGCAACC 58.578 45.455 0.00 0.00 41.27 3.77
4645 5693 1.228831 CAGCCACAAACCCCCATCA 60.229 57.895 0.00 0.00 0.00 3.07
4654 5702 4.808558 CTTTAATAAGCTGCAGCCACAAA 58.191 39.130 34.39 23.27 43.38 2.83
4716 5764 3.963525 TCATAATGGGACCCCCTCTAT 57.036 47.619 8.45 0.00 45.70 1.98
4736 5784 8.762645 TCATCCTTCATTGACTACATAGACTTT 58.237 33.333 0.00 0.00 0.00 2.66
4912 5960 0.684535 TCGGCACAAAGTGGAGATCA 59.315 50.000 0.00 0.00 33.64 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.