Multiple sequence alignment - TraesCS6A01G046000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G046000 chr6A 100.000 4892 0 0 1 4892 23639481 23634590 0.000000e+00 9034.0
1 TraesCS6A01G046000 chr6A 90.614 3015 185 42 1813 4767 23653679 23650703 0.000000e+00 3910.0
2 TraesCS6A01G046000 chr6A 81.959 1419 227 18 2617 4024 23678187 23676787 0.000000e+00 1175.0
3 TraesCS6A01G046000 chr6A 87.647 680 79 3 3165 3842 24458013 24458689 0.000000e+00 785.0
4 TraesCS6A01G046000 chr6A 84.396 737 41 31 644 1339 23654717 23654014 0.000000e+00 656.0
5 TraesCS6A01G046000 chr6A 84.375 512 74 2 2615 3126 24771876 24771371 9.460000e-137 497.0
6 TraesCS6A01G046000 chr6A 87.755 294 25 7 2309 2601 24772134 24771851 2.820000e-87 333.0
7 TraesCS6A01G046000 chr6A 85.827 254 31 5 2054 2306 24772323 24772074 1.040000e-66 265.0
8 TraesCS6A01G046000 chr6A 84.733 262 36 2 2046 2306 23678642 23678384 4.860000e-65 259.0
9 TraesCS6A01G046000 chr6A 85.638 188 25 2 4004 4189 23676651 23676464 3.860000e-46 196.0
10 TraesCS6A01G046000 chr6A 77.432 257 36 14 1545 1796 23678918 23678679 3.070000e-27 134.0
11 TraesCS6A01G046000 chr6D 91.672 3398 152 48 644 3982 25642992 25639667 0.000000e+00 4586.0
12 TraesCS6A01G046000 chr6D 82.448 1430 224 19 2604 4024 25648514 25647103 0.000000e+00 1225.0
13 TraesCS6A01G046000 chr6D 91.805 781 31 6 4020 4771 25639659 25638883 0.000000e+00 1057.0
14 TraesCS6A01G046000 chr6D 86.702 188 23 2 4004 4189 25646967 25646780 1.780000e-49 207.0
15 TraesCS6A01G046000 chr6D 81.667 120 12 8 1504 1618 25649315 25649201 1.880000e-14 91.6
16 TraesCS6A01G046000 chr6B 94.204 2191 108 13 2093 4269 41448563 41446378 0.000000e+00 3325.0
17 TraesCS6A01G046000 chr6B 82.314 1210 185 19 2606 3808 41456438 41455251 0.000000e+00 1022.0
18 TraesCS6A01G046000 chr6B 89.164 849 36 16 644 1475 41449999 41449190 0.000000e+00 1007.0
19 TraesCS6A01G046000 chr6B 85.929 732 83 14 3175 3898 43223013 43222294 0.000000e+00 763.0
20 TraesCS6A01G046000 chr6B 91.697 554 31 7 1473 2024 41449109 41448569 0.000000e+00 754.0
21 TraesCS6A01G046000 chr6B 84.405 513 72 4 2615 3126 43223539 43223034 9.460000e-137 497.0
22 TraesCS6A01G046000 chr6B 84.359 390 50 10 3806 4188 41454977 41454592 5.980000e-99 372.0
23 TraesCS6A01G046000 chr6B 87.415 294 26 7 2309 2601 43223797 43223514 1.310000e-85 327.0
24 TraesCS6A01G046000 chr6B 86.328 256 28 7 2054 2306 43223988 43223737 6.240000e-69 272.0
25 TraesCS6A01G046000 chr6B 95.890 146 5 1 4748 4892 165748828 165748973 8.190000e-58 235.0
26 TraesCS6A01G046000 chr6B 78.310 355 38 17 1504 1855 43224687 43224369 5.000000e-45 193.0
27 TraesCS6A01G046000 chr6B 75.419 358 39 18 1143 1494 43225218 43224904 1.430000e-25 128.0
28 TraesCS6A01G046000 chrUn 86.562 1280 150 14 2608 3877 93845066 93846333 0.000000e+00 1391.0
29 TraesCS6A01G046000 chrUn 83.295 1293 160 32 2615 3898 94023532 94022287 0.000000e+00 1140.0
30 TraesCS6A01G046000 chrUn 87.415 294 26 7 2309 2601 94023790 94023507 1.310000e-85 327.0
31 TraesCS6A01G046000 chrUn 86.614 254 29 5 2054 2306 94023979 94023730 4.820000e-70 276.0
32 TraesCS6A01G046000 chrUn 77.778 360 40 22 1504 1860 94024676 94024354 8.360000e-43 185.0
33 TraesCS6A01G046000 chrUn 77.733 247 31 9 1143 1384 94025410 94025183 3.970000e-26 130.0
34 TraesCS6A01G046000 chr2D 95.118 635 26 5 1 633 286028088 286027457 0.000000e+00 996.0
35 TraesCS6A01G046000 chr7B 88.715 638 64 7 1 633 66035974 66036608 0.000000e+00 773.0
36 TraesCS6A01G046000 chr7B 74.820 278 69 1 5 281 188595727 188595450 1.850000e-24 124.0
37 TraesCS6A01G046000 chr3A 87.051 641 64 14 5 639 450767664 450768291 0.000000e+00 706.0
38 TraesCS6A01G046000 chr7A 86.319 614 65 14 2 605 86095225 86095829 0.000000e+00 651.0
39 TraesCS6A01G046000 chr7A 95.205 146 5 2 4748 4892 708674509 708674653 3.810000e-56 230.0
40 TraesCS6A01G046000 chr7A 92.405 158 8 4 4739 4892 29299104 29298947 6.370000e-54 222.0
41 TraesCS6A01G046000 chr5B 76.993 439 87 12 2 435 473892986 473893415 6.330000e-59 239.0
42 TraesCS6A01G046000 chr2B 98.507 134 2 0 4759 4892 622419585 622419718 2.280000e-58 237.0
43 TraesCS6A01G046000 chr2B 94.040 151 5 3 4742 4892 166758216 166758362 4.930000e-55 226.0
44 TraesCS6A01G046000 chr5A 97.122 139 3 1 4755 4892 598491125 598491263 2.940000e-57 233.0
45 TraesCS6A01G046000 chr2A 97.122 139 3 1 4754 4892 428873749 428873886 2.940000e-57 233.0
46 TraesCS6A01G046000 chr2A 90.909 165 8 5 4730 4892 747003095 747002936 1.070000e-51 215.0
47 TraesCS6A01G046000 chr1B 96.454 141 4 1 4753 4892 44113120 44113260 1.060000e-56 231.0
48 TraesCS6A01G046000 chr1B 73.669 338 79 10 2626 2958 331139746 331140078 6.650000e-24 122.0
49 TraesCS6A01G046000 chr3B 79.876 323 56 8 164 481 10929254 10929572 1.370000e-55 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G046000 chr6A 23634590 23639481 4891 True 9034.000000 9034 100.000000 1 4892 1 chr6A.!!$R1 4891
1 TraesCS6A01G046000 chr6A 23650703 23654717 4014 True 2283.000000 3910 87.505000 644 4767 2 chr6A.!!$R2 4123
2 TraesCS6A01G046000 chr6A 24458013 24458689 676 False 785.000000 785 87.647000 3165 3842 1 chr6A.!!$F1 677
3 TraesCS6A01G046000 chr6A 23676464 23678918 2454 True 441.000000 1175 82.440500 1545 4189 4 chr6A.!!$R3 2644
4 TraesCS6A01G046000 chr6A 24771371 24772323 952 True 365.000000 497 85.985667 2054 3126 3 chr6A.!!$R4 1072
5 TraesCS6A01G046000 chr6D 25638883 25649315 10432 True 1433.320000 4586 86.858800 644 4771 5 chr6D.!!$R1 4127
6 TraesCS6A01G046000 chr6B 41446378 41449999 3621 True 1695.333333 3325 91.688333 644 4269 3 chr6B.!!$R1 3625
7 TraesCS6A01G046000 chr6B 41454592 41456438 1846 True 697.000000 1022 83.336500 2606 4188 2 chr6B.!!$R2 1582
8 TraesCS6A01G046000 chr6B 43222294 43225218 2924 True 363.333333 763 82.967667 1143 3898 6 chr6B.!!$R3 2755
9 TraesCS6A01G046000 chrUn 93845066 93846333 1267 False 1391.000000 1391 86.562000 2608 3877 1 chrUn.!!$F1 1269
10 TraesCS6A01G046000 chrUn 94022287 94025410 3123 True 411.600000 1140 82.567000 1143 3898 5 chrUn.!!$R1 2755
11 TraesCS6A01G046000 chr2D 286027457 286028088 631 True 996.000000 996 95.118000 1 633 1 chr2D.!!$R1 632
12 TraesCS6A01G046000 chr7B 66035974 66036608 634 False 773.000000 773 88.715000 1 633 1 chr7B.!!$F1 632
13 TraesCS6A01G046000 chr3A 450767664 450768291 627 False 706.000000 706 87.051000 5 639 1 chr3A.!!$F1 634
14 TraesCS6A01G046000 chr7A 86095225 86095829 604 False 651.000000 651 86.319000 2 605 1 chr7A.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 587 0.032267 CTCGAACCCTAATCGCCTCC 59.968 60.000 0.00 0.00 40.04 4.30 F
621 624 0.103937 ACGTAAAAACCGTCACCCGA 59.896 50.000 0.00 0.00 39.56 5.14 F
1405 7149 0.099259 GCTGCATGTTATCGCAAGCA 59.901 50.000 0.00 0.00 40.17 3.91 F
1406 7150 1.268896 GCTGCATGTTATCGCAAGCAT 60.269 47.619 0.00 0.00 41.31 3.79 F
3156 9690 1.726853 AATGTGTTGTAGGCTCGAGC 58.273 50.000 29.38 29.38 41.14 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 7142 0.452287 GCAGCGATATCATGCTTGCG 60.452 55.000 18.23 4.16 40.03 4.85 R
2358 8885 1.541588 ACTTTCTTCCGAGCCAATTGC 59.458 47.619 0.00 0.00 41.71 3.56 R
3301 9851 0.468226 TCATATGCCCCAGAACCGTC 59.532 55.000 0.00 0.00 0.00 4.79 R
3615 10267 6.367969 ACACCGTGTTCTTGAGAATATAACAC 59.632 38.462 0.00 0.00 43.98 3.32 R
4545 11665 0.095417 CGAAAGCTTAAGACCGCTGC 59.905 55.000 6.67 0.00 36.45 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 2.358737 AGTGCCTTCCGCTTTCCG 60.359 61.111 0.00 0.00 38.78 4.30
145 146 8.328758 TGAAGATGAACACAAACCTATTATCCT 58.671 33.333 0.00 0.00 0.00 3.24
147 148 7.861629 AGATGAACACAAACCTATTATCCTCA 58.138 34.615 0.00 0.00 0.00 3.86
161 162 1.130054 TCCTCAGCCTCCTTGCAGTT 61.130 55.000 0.00 0.00 0.00 3.16
264 267 1.107114 CACCGCCTGAGTGAGATACT 58.893 55.000 0.00 0.00 44.02 2.12
374 377 0.563173 CCTCCATCTCCCTCCTACCA 59.437 60.000 0.00 0.00 0.00 3.25
406 409 0.396835 GCCGTACTCCTCCTAGGGTT 60.397 60.000 9.46 0.00 35.59 4.11
408 411 2.464782 CCGTACTCCTCCTAGGGTTTT 58.535 52.381 9.46 0.00 35.59 2.43
409 412 2.167900 CCGTACTCCTCCTAGGGTTTTG 59.832 54.545 9.46 0.00 35.59 2.44
410 413 2.167900 CGTACTCCTCCTAGGGTTTTGG 59.832 54.545 9.46 4.31 35.59 3.28
411 414 2.435203 ACTCCTCCTAGGGTTTTGGT 57.565 50.000 9.46 0.00 35.59 3.67
412 415 1.985895 ACTCCTCCTAGGGTTTTGGTG 59.014 52.381 9.46 7.40 35.59 4.17
417 420 4.416179 TCCTCCTAGGGTTTTGGTGTTTTA 59.584 41.667 9.46 0.00 35.59 1.52
418 421 4.521639 CCTCCTAGGGTTTTGGTGTTTTAC 59.478 45.833 9.46 0.00 0.00 2.01
419 422 4.136051 TCCTAGGGTTTTGGTGTTTTACG 58.864 43.478 9.46 0.00 0.00 3.18
420 423 4.136051 CCTAGGGTTTTGGTGTTTTACGA 58.864 43.478 0.00 0.00 0.00 3.43
421 424 4.023792 CCTAGGGTTTTGGTGTTTTACGAC 60.024 45.833 0.00 0.00 0.00 4.34
422 425 2.689471 AGGGTTTTGGTGTTTTACGACC 59.311 45.455 0.00 0.00 0.00 4.79
423 426 2.541383 GGGTTTTGGTGTTTTACGACCG 60.541 50.000 0.00 0.00 34.69 4.79
424 427 2.097304 GGTTTTGGTGTTTTACGACCGT 59.903 45.455 0.00 0.00 34.69 4.83
425 428 3.100089 GTTTTGGTGTTTTACGACCGTG 58.900 45.455 5.20 0.00 34.69 4.94
426 429 0.656785 TTGGTGTTTTACGACCGTGC 59.343 50.000 5.20 0.00 34.69 5.34
427 430 1.202320 GGTGTTTTACGACCGTGCG 59.798 57.895 5.20 0.00 37.29 5.34
429 432 2.171701 GTTTTACGACCGTGCGCC 59.828 61.111 4.18 0.00 33.86 6.53
430 433 3.043121 TTTTACGACCGTGCGCCC 61.043 61.111 4.18 0.00 33.86 6.13
431 434 3.518419 TTTTACGACCGTGCGCCCT 62.518 57.895 4.18 0.00 33.86 5.19
432 435 2.152297 TTTTACGACCGTGCGCCCTA 62.152 55.000 4.18 0.00 33.86 3.53
433 436 2.546645 TTTACGACCGTGCGCCCTAG 62.547 60.000 4.18 0.00 33.86 3.02
443 446 3.390521 CGCCCTAGGGAGCACACA 61.391 66.667 33.21 0.00 37.50 3.72
444 447 2.586792 GCCCTAGGGAGCACACAG 59.413 66.667 33.21 1.27 37.50 3.66
445 448 1.990060 GCCCTAGGGAGCACACAGA 60.990 63.158 33.21 0.00 37.50 3.41
447 450 0.539051 CCCTAGGGAGCACACAGAAG 59.461 60.000 24.99 0.00 37.50 2.85
448 451 0.539051 CCTAGGGAGCACACAGAAGG 59.461 60.000 0.00 0.00 0.00 3.46
451 454 1.073897 GGGAGCACACAGAAGGCTT 59.926 57.895 0.00 0.00 38.15 4.35
452 455 0.957888 GGGAGCACACAGAAGGCTTC 60.958 60.000 19.53 19.53 38.15 3.86
453 456 0.036022 GGAGCACACAGAAGGCTTCT 59.964 55.000 23.76 23.76 41.70 2.85
469 472 2.423577 CTTCTGGTGGAAGGGTTAACG 58.576 52.381 0.00 0.00 45.55 3.18
470 473 1.719529 TCTGGTGGAAGGGTTAACGA 58.280 50.000 0.00 0.00 0.00 3.85
471 474 1.345415 TCTGGTGGAAGGGTTAACGAC 59.655 52.381 0.00 0.00 0.00 4.34
472 475 0.033781 TGGTGGAAGGGTTAACGACG 59.966 55.000 0.00 0.00 0.00 5.12
473 476 0.318120 GGTGGAAGGGTTAACGACGA 59.682 55.000 0.00 0.00 0.00 4.20
474 477 1.670967 GGTGGAAGGGTTAACGACGAG 60.671 57.143 0.00 0.00 0.00 4.18
476 479 0.738762 GGAAGGGTTAACGACGAGGC 60.739 60.000 0.00 0.00 0.00 4.70
477 480 0.245813 GAAGGGTTAACGACGAGGCT 59.754 55.000 0.00 0.00 0.00 4.58
478 481 0.245813 AAGGGTTAACGACGAGGCTC 59.754 55.000 3.87 3.87 0.00 4.70
480 483 2.157073 GGTTAACGACGAGGCTCGC 61.157 63.158 34.76 25.13 45.12 5.03
485 488 3.561213 CGACGAGGCTCGCGTAGA 61.561 66.667 34.76 0.00 45.12 2.59
486 489 2.883468 CGACGAGGCTCGCGTAGAT 61.883 63.158 34.76 16.00 45.12 1.98
487 490 1.369448 GACGAGGCTCGCGTAGATG 60.369 63.158 34.76 8.50 45.12 2.90
488 491 2.727647 CGAGGCTCGCGTAGATGC 60.728 66.667 25.31 4.16 31.14 3.91
496 499 4.197522 GCGTAGATGCGAGAGACG 57.802 61.111 0.00 0.00 45.66 4.18
497 500 1.642215 GCGTAGATGCGAGAGACGA 59.358 57.895 0.00 0.00 45.77 4.20
500 503 0.383737 GTAGATGCGAGAGACGAGCG 60.384 60.000 0.00 0.00 45.77 5.03
501 504 0.529992 TAGATGCGAGAGACGAGCGA 60.530 55.000 0.00 0.00 45.77 4.93
502 505 1.163420 AGATGCGAGAGACGAGCGAT 61.163 55.000 0.00 0.00 45.77 4.58
504 507 2.424479 GCGAGAGACGAGCGATCG 60.424 66.667 23.12 23.12 45.77 3.69
505 508 2.872515 GCGAGAGACGAGCGATCGA 61.873 63.158 31.66 0.00 45.77 3.59
521 524 2.965671 TCGATCGAGTATAAGGGGGT 57.034 50.000 15.15 0.00 0.00 4.95
523 526 1.544691 CGATCGAGTATAAGGGGGTGG 59.455 57.143 10.26 0.00 0.00 4.61
524 527 2.606378 GATCGAGTATAAGGGGGTGGT 58.394 52.381 0.00 0.00 0.00 4.16
525 528 1.784358 TCGAGTATAAGGGGGTGGTG 58.216 55.000 0.00 0.00 0.00 4.17
526 529 0.756903 CGAGTATAAGGGGGTGGTGG 59.243 60.000 0.00 0.00 0.00 4.61
527 530 0.472898 GAGTATAAGGGGGTGGTGGC 59.527 60.000 0.00 0.00 0.00 5.01
528 531 1.147600 GTATAAGGGGGTGGTGGCG 59.852 63.158 0.00 0.00 0.00 5.69
529 532 1.003182 TATAAGGGGGTGGTGGCGA 59.997 57.895 0.00 0.00 0.00 5.54
530 533 0.400815 TATAAGGGGGTGGTGGCGAT 60.401 55.000 0.00 0.00 0.00 4.58
534 537 3.861797 GGGGTGGTGGCGATCGAT 61.862 66.667 21.57 0.00 0.00 3.59
535 538 2.280186 GGGTGGTGGCGATCGATC 60.280 66.667 21.57 15.68 0.00 3.69
536 539 2.797278 GGGTGGTGGCGATCGATCT 61.797 63.158 21.57 0.00 0.00 2.75
538 541 1.437573 GTGGTGGCGATCGATCTCA 59.562 57.895 21.57 16.89 0.00 3.27
539 542 0.179111 GTGGTGGCGATCGATCTCAA 60.179 55.000 21.57 6.07 0.00 3.02
540 543 0.534873 TGGTGGCGATCGATCTCAAA 59.465 50.000 21.57 4.99 0.00 2.69
541 544 0.931005 GGTGGCGATCGATCTCAAAC 59.069 55.000 21.57 15.69 0.00 2.93
542 545 0.572590 GTGGCGATCGATCTCAAACG 59.427 55.000 21.57 10.41 0.00 3.60
543 546 0.454196 TGGCGATCGATCTCAAACGA 59.546 50.000 21.57 0.00 42.49 3.85
544 547 1.124462 GGCGATCGATCTCAAACGAG 58.876 55.000 21.57 6.12 41.63 4.18
546 549 1.776333 GCGATCGATCTCAAACGAGAC 59.224 52.381 21.57 0.00 42.28 3.36
547 550 2.376956 CGATCGATCTCAAACGAGACC 58.623 52.381 22.43 0.00 42.28 3.85
549 552 3.247886 CGATCGATCTCAAACGAGACCTA 59.752 47.826 22.43 0.00 42.28 3.08
551 554 4.553756 TCGATCTCAAACGAGACCTATG 57.446 45.455 0.00 0.00 42.28 2.23
552 555 3.315470 TCGATCTCAAACGAGACCTATGG 59.685 47.826 0.00 0.00 42.28 2.74
553 556 3.315470 CGATCTCAAACGAGACCTATGGA 59.685 47.826 0.00 0.00 42.28 3.41
554 557 4.555708 CGATCTCAAACGAGACCTATGGAG 60.556 50.000 0.00 0.00 42.28 3.86
564 567 2.028190 CTATGGAGGCAGACCGCG 59.972 66.667 0.00 0.00 43.84 6.46
565 568 4.221422 TATGGAGGCAGACCGCGC 62.221 66.667 0.00 0.00 43.84 6.86
575 578 3.818787 GACCGCGCTCGAACCCTA 61.819 66.667 5.56 0.00 38.10 3.53
576 579 3.346631 GACCGCGCTCGAACCCTAA 62.347 63.158 5.56 0.00 38.10 2.69
579 582 2.293627 CGCGCTCGAACCCTAATCG 61.294 63.158 5.56 0.00 41.53 3.34
580 583 2.586773 GCGCTCGAACCCTAATCGC 61.587 63.158 0.00 0.00 40.04 4.58
581 584 1.949631 CGCTCGAACCCTAATCGCC 60.950 63.158 0.00 0.00 40.04 5.54
582 585 1.442148 GCTCGAACCCTAATCGCCT 59.558 57.895 0.00 0.00 40.04 5.52
584 587 0.032267 CTCGAACCCTAATCGCCTCC 59.968 60.000 0.00 0.00 40.04 4.30
585 588 1.299926 CGAACCCTAATCGCCTCCG 60.300 63.158 0.00 0.00 33.07 4.63
587 590 1.035139 GAACCCTAATCGCCTCCGTA 58.965 55.000 0.00 0.00 35.54 4.02
588 591 1.410153 GAACCCTAATCGCCTCCGTAA 59.590 52.381 0.00 0.00 35.54 3.18
589 592 1.713297 ACCCTAATCGCCTCCGTAAT 58.287 50.000 0.00 0.00 35.54 1.89
591 594 1.402456 CCCTAATCGCCTCCGTAATCG 60.402 57.143 0.00 0.00 35.54 3.34
592 595 1.538512 CCTAATCGCCTCCGTAATCGA 59.461 52.381 0.00 0.00 39.71 3.59
593 596 2.582687 CTAATCGCCTCCGTAATCGAC 58.417 52.381 0.00 0.00 39.71 4.20
606 609 4.418337 TCGACGGAGCGATACGTA 57.582 55.556 12.64 0.00 44.24 3.57
607 610 2.676744 TCGACGGAGCGATACGTAA 58.323 52.632 12.64 0.00 44.24 3.18
609 612 1.396648 TCGACGGAGCGATACGTAAAA 59.603 47.619 12.64 0.00 44.24 1.52
610 613 2.159585 TCGACGGAGCGATACGTAAAAA 60.160 45.455 12.64 0.00 44.24 1.94
611 614 2.036250 CGACGGAGCGATACGTAAAAAC 60.036 50.000 12.64 0.00 44.24 2.43
612 615 2.262211 ACGGAGCGATACGTAAAAACC 58.738 47.619 10.34 0.00 42.15 3.27
613 616 1.253545 CGGAGCGATACGTAAAAACCG 59.746 52.381 0.00 8.14 0.00 4.44
615 618 2.279921 GGAGCGATACGTAAAAACCGTC 59.720 50.000 0.00 0.00 39.60 4.79
616 619 2.916716 GAGCGATACGTAAAAACCGTCA 59.083 45.455 0.00 0.00 39.60 4.35
617 620 2.663119 AGCGATACGTAAAAACCGTCAC 59.337 45.455 0.00 0.00 39.60 3.67
618 621 2.222574 GCGATACGTAAAAACCGTCACC 60.223 50.000 0.00 0.00 39.60 4.02
619 622 2.345341 CGATACGTAAAAACCGTCACCC 59.655 50.000 0.00 0.00 39.60 4.61
620 623 1.777101 TACGTAAAAACCGTCACCCG 58.223 50.000 0.00 0.00 39.60 5.28
621 624 0.103937 ACGTAAAAACCGTCACCCGA 59.896 50.000 0.00 0.00 39.56 5.14
641 644 2.260743 GGACGGACCCTTGTCGTC 59.739 66.667 6.55 6.55 42.73 4.20
656 6337 0.959553 TCGTCTGAGTCGAAGCCTTT 59.040 50.000 0.00 0.00 34.36 3.11
666 6347 3.579151 AGTCGAAGCCTTTTAGGAGTTCT 59.421 43.478 0.00 0.00 37.67 3.01
667 6348 3.680458 GTCGAAGCCTTTTAGGAGTTCTG 59.320 47.826 0.00 0.00 37.67 3.02
668 6349 2.416893 CGAAGCCTTTTAGGAGTTCTGC 59.583 50.000 0.00 0.00 37.67 4.26
669 6350 3.680490 GAAGCCTTTTAGGAGTTCTGCT 58.320 45.455 0.00 0.00 37.67 4.24
670 6351 3.064900 AGCCTTTTAGGAGTTCTGCTG 57.935 47.619 4.17 0.00 37.67 4.41
671 6352 2.087646 GCCTTTTAGGAGTTCTGCTGG 58.912 52.381 4.17 0.00 37.67 4.85
672 6353 2.290323 GCCTTTTAGGAGTTCTGCTGGA 60.290 50.000 4.17 0.00 37.67 3.86
696 6377 1.492720 GAGGCGCTCTTAAAGATCCG 58.507 55.000 7.64 0.00 0.00 4.18
707 6388 2.656560 AAAGATCCGGACAGTTCGAG 57.343 50.000 6.12 0.00 0.00 4.04
713 6394 0.730265 CCGGACAGTTCGAGAGAGAG 59.270 60.000 1.55 0.00 43.69 3.20
714 6395 1.676314 CCGGACAGTTCGAGAGAGAGA 60.676 57.143 1.55 0.00 43.69 3.10
715 6396 1.663643 CGGACAGTTCGAGAGAGAGAG 59.336 57.143 0.00 0.00 43.69 3.20
748 6429 1.555075 CAGGAATCCGTGGGAAGAAGA 59.445 52.381 0.00 0.00 34.34 2.87
750 6431 3.388024 CAGGAATCCGTGGGAAGAAGATA 59.612 47.826 0.00 0.00 34.34 1.98
782 6464 1.431488 CCCATCGCAGTTGTCCATCG 61.431 60.000 0.00 0.00 0.00 3.84
787 6469 2.819595 CAGTTGTCCATCGCCCGG 60.820 66.667 0.00 0.00 0.00 5.73
788 6470 3.000819 AGTTGTCCATCGCCCGGA 61.001 61.111 0.73 0.00 0.00 5.14
790 6472 2.106683 GTTGTCCATCGCCCGGAAG 61.107 63.158 0.73 0.00 33.29 3.46
952 6648 4.671831 AGAGGAGTTGAGATCTGAAGTGA 58.328 43.478 7.01 0.00 0.00 3.41
987 6688 1.400737 CGAGGGAGGAAGGTATCGTT 58.599 55.000 0.00 0.00 0.00 3.85
997 6698 0.179134 AGGTATCGTTGTCTGCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
1021 6730 3.512516 GGATGCTGGCGCTGAACC 61.513 66.667 7.64 0.00 36.97 3.62
1071 6780 2.656069 GCGTCAGCAAGGGGGAGTA 61.656 63.158 0.00 0.00 44.35 2.59
1217 6960 2.025605 GGACGGGTAAAAGGAAGGGATT 60.026 50.000 0.00 0.00 0.00 3.01
1218 6961 3.200605 GGACGGGTAAAAGGAAGGGATTA 59.799 47.826 0.00 0.00 0.00 1.75
1255 6998 4.436332 TGACGATGGTGATGATTCTCAAG 58.564 43.478 0.00 0.00 0.00 3.02
1356 7100 5.532779 TGATATCACTGCGACTACTCTCATT 59.467 40.000 0.00 0.00 0.00 2.57
1389 7133 0.593518 CTCGTGACTATGCTCGGCTG 60.594 60.000 0.00 0.00 0.00 4.85
1390 7134 2.233654 CGTGACTATGCTCGGCTGC 61.234 63.158 0.00 0.00 0.00 5.25
1397 7141 4.961637 TGCTCGGCTGCATGTTAT 57.038 50.000 0.50 0.00 38.12 1.89
1398 7142 2.694065 TGCTCGGCTGCATGTTATC 58.306 52.632 0.50 0.00 38.12 1.75
1399 7143 1.153597 TGCTCGGCTGCATGTTATCG 61.154 55.000 0.50 0.00 38.12 2.92
1400 7144 1.566563 CTCGGCTGCATGTTATCGC 59.433 57.895 0.50 0.00 0.00 4.58
1401 7145 1.153469 TCGGCTGCATGTTATCGCA 60.153 52.632 0.50 0.00 36.52 5.10
1402 7146 0.742635 TCGGCTGCATGTTATCGCAA 60.743 50.000 0.50 0.00 37.76 4.85
1403 7147 0.316442 CGGCTGCATGTTATCGCAAG 60.316 55.000 0.50 0.00 37.76 4.01
1404 7148 0.593263 GGCTGCATGTTATCGCAAGC 60.593 55.000 0.50 0.00 37.76 4.01
1405 7149 0.099259 GCTGCATGTTATCGCAAGCA 59.901 50.000 0.00 0.00 40.17 3.91
1406 7150 1.268896 GCTGCATGTTATCGCAAGCAT 60.269 47.619 0.00 0.00 41.31 3.79
1407 7151 2.381589 CTGCATGTTATCGCAAGCATG 58.618 47.619 8.58 8.58 41.31 4.06
1408 7152 2.015587 TGCATGTTATCGCAAGCATGA 58.984 42.857 14.66 1.87 40.61 3.07
1409 7153 2.619646 TGCATGTTATCGCAAGCATGAT 59.380 40.909 14.66 0.00 40.61 2.45
1410 7154 3.814283 TGCATGTTATCGCAAGCATGATA 59.186 39.130 14.66 3.67 40.61 2.15
1411 7155 4.456566 TGCATGTTATCGCAAGCATGATAT 59.543 37.500 14.66 0.00 40.61 1.63
1412 7156 5.026462 GCATGTTATCGCAAGCATGATATC 58.974 41.667 14.66 0.00 40.61 1.63
1526 7797 2.286833 GTGCTGTAACAAAGTTCGAGCA 59.713 45.455 1.01 10.12 32.73 4.26
1543 7814 4.763279 TCGAGCAATCATTGATTGGCATAT 59.237 37.500 30.73 13.99 46.49 1.78
1544 7815 5.939296 TCGAGCAATCATTGATTGGCATATA 59.061 36.000 30.73 13.54 46.49 0.86
1545 7816 6.600427 TCGAGCAATCATTGATTGGCATATAT 59.400 34.615 30.73 13.46 46.49 0.86
1546 7817 7.769970 TCGAGCAATCATTGATTGGCATATATA 59.230 33.333 30.73 11.38 46.49 0.86
1591 7862 7.309990 GGAAAAATGATTCATCTTTCCACCTGA 60.310 37.037 28.14 0.00 0.00 3.86
1613 7889 6.012113 TGATTCACAACCTCTCCAAATCATT 58.988 36.000 0.00 0.00 29.39 2.57
1614 7890 5.710513 TTCACAACCTCTCCAAATCATTG 57.289 39.130 0.00 0.00 36.25 2.82
1615 7891 4.984295 TCACAACCTCTCCAAATCATTGA 58.016 39.130 0.00 0.00 38.94 2.57
1616 7892 5.573219 TCACAACCTCTCCAAATCATTGAT 58.427 37.500 0.00 0.00 38.94 2.57
1752 8032 8.410673 TTGTGCTACCTAAATCCATAACAAAA 57.589 30.769 0.00 0.00 0.00 2.44
1916 8219 2.440627 TGGAGTGCCATTCAGATATGCT 59.559 45.455 0.00 0.00 39.92 3.79
1917 8220 3.647590 TGGAGTGCCATTCAGATATGCTA 59.352 43.478 0.00 0.00 39.92 3.49
1970 8478 7.349598 AGGAAAACTTATCTATGGATTGCTGT 58.650 34.615 0.00 0.00 33.71 4.40
2002 8511 3.061469 GCAAAGTTACGTTCCTTTTTGCG 60.061 43.478 14.98 5.64 40.34 4.85
2005 8519 3.132925 AGTTACGTTCCTTTTTGCGCTA 58.867 40.909 9.73 0.00 0.00 4.26
2024 8538 4.499188 CGCTACCTACTATGTAAAGCAGCA 60.499 45.833 0.00 0.00 0.00 4.41
2029 8543 5.817816 ACCTACTATGTAAAGCAGCACAATC 59.182 40.000 0.00 0.00 0.00 2.67
2031 8545 5.808042 ACTATGTAAAGCAGCACAATCTG 57.192 39.130 0.00 0.00 37.15 2.90
2100 8621 1.991121 ACTCCGTGTGGTTCTACTGA 58.009 50.000 0.00 0.00 36.30 3.41
2243 8770 4.233635 GCTGCTTGCGCATCTCGG 62.234 66.667 12.75 9.73 46.74 4.63
2321 8848 5.878406 TTGGCTTTCCCTTTTTACATTCA 57.122 34.783 0.00 0.00 0.00 2.57
2355 8882 4.764050 TCCGGCCTCATCTTTAATAACA 57.236 40.909 0.00 0.00 0.00 2.41
2358 8885 5.530915 TCCGGCCTCATCTTTAATAACAATG 59.469 40.000 0.00 0.00 0.00 2.82
2380 8910 2.554032 CAATTGGCTCGGAAGAAAGTGT 59.446 45.455 0.00 0.00 41.32 3.55
2665 9195 4.706962 GCTTTTATCTGACAGGGTTGGAAT 59.293 41.667 1.81 0.00 0.00 3.01
2900 9430 3.452264 GGCTCAAGGGGCTTCATATTTTT 59.548 43.478 0.00 0.00 0.00 1.94
2912 9442 6.183360 GGCTTCATATTTTTGTATGCCAGAGT 60.183 38.462 0.00 0.00 37.91 3.24
2919 9449 5.689383 TTTTGTATGCCAGAGTTTGAGAC 57.311 39.130 0.00 0.00 0.00 3.36
2958 9488 6.895204 AGCTCCAAATCTCTCTAGTCTTTACT 59.105 38.462 0.00 0.00 39.91 2.24
2972 9502 8.634444 TCTAGTCTTTACTTTAGATCAGGATGC 58.366 37.037 0.00 0.00 37.15 3.91
3057 9587 4.935205 GCAATGTTATCTATGATGCCCGTA 59.065 41.667 0.00 0.00 0.00 4.02
3156 9690 1.726853 AATGTGTTGTAGGCTCGAGC 58.273 50.000 29.38 29.38 41.14 5.03
3172 9708 8.160521 AGGCTCGAGCTATATACATACTATTG 57.839 38.462 34.46 0.00 41.70 1.90
3204 9750 4.527509 AACTGGTGTAGTGTCTCTGATG 57.472 45.455 0.00 0.00 40.26 3.07
3214 9760 4.252073 AGTGTCTCTGATGCATGAAGTTC 58.748 43.478 2.46 0.00 0.00 3.01
3301 9851 7.775093 TGACCATTATTTTGAGATTAGGACCAG 59.225 37.037 0.00 0.00 0.00 4.00
3615 10267 3.662713 CGAAGTGCTTGATTGAACTGACG 60.663 47.826 0.00 0.00 0.00 4.35
3634 10286 7.375834 ACTGACGTGTTATATTCTCAAGAACA 58.624 34.615 0.00 0.00 36.80 3.18
3723 10392 0.178938 ATTGGTGTGTTCCCATGGCA 60.179 50.000 6.09 0.00 0.00 4.92
4025 11137 8.143193 CCATGTTAATATGCTTGCAAGGATTAA 58.857 33.333 34.11 25.01 38.16 1.40
4072 11185 6.587226 TGTTGCAAGATATGATGTGCTTTTTC 59.413 34.615 0.00 0.00 37.87 2.29
4073 11186 5.653507 TGCAAGATATGATGTGCTTTTTCC 58.346 37.500 0.00 0.00 37.87 3.13
4097 11210 5.163703 CCGCAAAGTATATTGTTACTGGCAA 60.164 40.000 0.00 0.00 35.03 4.52
4359 11479 8.655651 AAACTCTTGTGTTTTCTGTTTCAAAA 57.344 26.923 0.00 0.00 36.86 2.44
4378 11498 2.473576 ATTTCCCCGTAGAGCTAGGT 57.526 50.000 0.00 0.00 0.00 3.08
4552 11672 1.706443 GTTTAAGACGTAGCAGCGGT 58.294 50.000 0.00 0.00 35.98 5.68
4565 11685 1.429463 CAGCGGTCTTAAGCTTTCGT 58.571 50.000 3.20 0.00 42.52 3.85
4603 11727 6.364165 TGTCAAATAGCTTACGTACTTGACAC 59.636 38.462 18.62 3.27 43.59 3.67
4632 11783 1.373873 GGACGGTTCGGAAGTGGAC 60.374 63.158 0.00 0.00 0.00 4.02
4673 11828 1.278238 GTTGTTCGATGCCTCGTAGG 58.722 55.000 11.22 0.00 45.25 3.18
4697 11852 2.973180 GAAGCCGCGGTGGTATCTCC 62.973 65.000 28.70 6.22 41.21 3.71
4766 11921 1.477923 GGCAAAGTGTGTGAGGGGTTA 60.478 52.381 0.00 0.00 0.00 2.85
4767 11922 1.607148 GCAAAGTGTGTGAGGGGTTAC 59.393 52.381 0.00 0.00 0.00 2.50
4768 11923 2.748465 GCAAAGTGTGTGAGGGGTTACT 60.748 50.000 0.00 0.00 0.00 2.24
4769 11924 2.878406 CAAAGTGTGTGAGGGGTTACTG 59.122 50.000 0.00 0.00 0.00 2.74
4770 11925 2.097110 AGTGTGTGAGGGGTTACTGA 57.903 50.000 0.00 0.00 0.00 3.41
4771 11926 2.404559 AGTGTGTGAGGGGTTACTGAA 58.595 47.619 0.00 0.00 0.00 3.02
4772 11927 2.368875 AGTGTGTGAGGGGTTACTGAAG 59.631 50.000 0.00 0.00 0.00 3.02
4773 11928 1.697432 TGTGTGAGGGGTTACTGAAGG 59.303 52.381 0.00 0.00 0.00 3.46
4774 11929 1.975680 GTGTGAGGGGTTACTGAAGGA 59.024 52.381 0.00 0.00 0.00 3.36
4775 11930 2.370849 GTGTGAGGGGTTACTGAAGGAA 59.629 50.000 0.00 0.00 0.00 3.36
4776 11931 3.050089 TGTGAGGGGTTACTGAAGGAAA 58.950 45.455 0.00 0.00 0.00 3.13
4777 11932 3.655777 TGTGAGGGGTTACTGAAGGAAAT 59.344 43.478 0.00 0.00 0.00 2.17
4778 11933 4.847512 TGTGAGGGGTTACTGAAGGAAATA 59.152 41.667 0.00 0.00 0.00 1.40
4779 11934 5.491078 TGTGAGGGGTTACTGAAGGAAATAT 59.509 40.000 0.00 0.00 0.00 1.28
4780 11935 5.823045 GTGAGGGGTTACTGAAGGAAATATG 59.177 44.000 0.00 0.00 0.00 1.78
4781 11936 4.793201 AGGGGTTACTGAAGGAAATATGC 58.207 43.478 0.00 0.00 0.00 3.14
4782 11937 3.889538 GGGGTTACTGAAGGAAATATGCC 59.110 47.826 0.00 0.00 0.00 4.40
4783 11938 3.889538 GGGTTACTGAAGGAAATATGCCC 59.110 47.826 0.00 0.00 0.00 5.36
4784 11939 4.386424 GGGTTACTGAAGGAAATATGCCCT 60.386 45.833 0.00 0.00 0.00 5.19
4785 11940 5.163131 GGGTTACTGAAGGAAATATGCCCTA 60.163 44.000 0.00 0.00 31.36 3.53
4786 11941 5.998363 GGTTACTGAAGGAAATATGCCCTAG 59.002 44.000 0.00 0.00 31.36 3.02
4787 11942 6.183361 GGTTACTGAAGGAAATATGCCCTAGA 60.183 42.308 0.00 0.00 31.36 2.43
4788 11943 5.559148 ACTGAAGGAAATATGCCCTAGAG 57.441 43.478 0.00 0.46 31.36 2.43
4789 11944 4.349342 ACTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
4790 11945 4.566837 TGAAGGAAATATGCCCTAGAGGA 58.433 43.478 0.00 0.00 38.24 3.71
4791 11946 4.975147 TGAAGGAAATATGCCCTAGAGGAA 59.025 41.667 0.00 0.00 38.24 3.36
4792 11947 5.431731 TGAAGGAAATATGCCCTAGAGGAAA 59.568 40.000 0.00 0.00 38.24 3.13
4793 11948 6.103205 TGAAGGAAATATGCCCTAGAGGAAAT 59.897 38.462 0.00 0.00 38.24 2.17
4794 11949 7.294720 TGAAGGAAATATGCCCTAGAGGAAATA 59.705 37.037 0.00 0.00 38.24 1.40
4795 11950 7.648177 AGGAAATATGCCCTAGAGGAAATAA 57.352 36.000 0.00 0.00 38.24 1.40
4796 11951 8.237109 AGGAAATATGCCCTAGAGGAAATAAT 57.763 34.615 0.00 0.00 38.24 1.28
4797 11952 9.351572 AGGAAATATGCCCTAGAGGAAATAATA 57.648 33.333 0.00 0.00 38.24 0.98
4798 11953 9.975218 GGAAATATGCCCTAGAGGAAATAATAA 57.025 33.333 0.00 0.00 38.24 1.40
4864 12019 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
4865 12020 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
4866 12021 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
4867 12022 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
4868 12023 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
4869 12024 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
4870 12025 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
4871 12026 7.855904 GCTAGAATTGTATTAACCGGAAACATG 59.144 37.037 9.46 0.00 0.00 3.21
4872 12027 7.931578 AGAATTGTATTAACCGGAAACATGA 57.068 32.000 9.46 0.00 0.00 3.07
4873 12028 8.519799 AGAATTGTATTAACCGGAAACATGAT 57.480 30.769 9.46 0.00 0.00 2.45
4874 12029 9.621629 AGAATTGTATTAACCGGAAACATGATA 57.378 29.630 9.46 0.00 0.00 2.15
4875 12030 9.659830 GAATTGTATTAACCGGAAACATGATAC 57.340 33.333 9.46 7.13 0.00 2.24
4876 12031 8.740123 ATTGTATTAACCGGAAACATGATACA 57.260 30.769 9.46 9.57 0.00 2.29
4877 12032 8.740123 TTGTATTAACCGGAAACATGATACAT 57.260 30.769 9.46 0.00 31.27 2.29
4878 12033 8.148807 TGTATTAACCGGAAACATGATACATG 57.851 34.615 9.46 9.72 0.00 3.21
4879 12034 7.771361 TGTATTAACCGGAAACATGATACATGT 59.229 33.333 9.46 10.94 0.00 3.21
4880 12035 4.963276 AACCGGAAACATGATACATGTG 57.037 40.909 9.46 7.59 31.80 3.21
4881 12036 3.950397 ACCGGAAACATGATACATGTGT 58.050 40.909 9.46 11.88 31.80 3.72
4882 12037 3.689161 ACCGGAAACATGATACATGTGTG 59.311 43.478 9.46 4.81 31.80 3.82
4883 12038 3.938334 CCGGAAACATGATACATGTGTGA 59.062 43.478 16.29 0.00 31.80 3.58
4884 12039 4.394610 CCGGAAACATGATACATGTGTGAA 59.605 41.667 16.29 0.00 31.80 3.18
4885 12040 5.066375 CCGGAAACATGATACATGTGTGAAT 59.934 40.000 16.29 0.00 31.80 2.57
4886 12041 6.259829 CCGGAAACATGATACATGTGTGAATA 59.740 38.462 16.29 0.00 31.80 1.75
4887 12042 7.125755 CGGAAACATGATACATGTGTGAATAC 58.874 38.462 16.29 1.40 31.80 1.89
4888 12043 7.201600 CGGAAACATGATACATGTGTGAATACA 60.202 37.037 16.29 0.00 34.63 2.29
4889 12044 8.623903 GGAAACATGATACATGTGTGAATACAT 58.376 33.333 16.29 0.00 41.77 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 5.241506 TGTGTTCATCTTCAAACAGGAATCC 59.758 40.000 0.00 0.00 36.14 3.01
145 146 0.694771 ATCAACTGCAAGGAGGCTGA 59.305 50.000 0.00 0.00 39.30 4.26
147 148 0.034670 GGATCAACTGCAAGGAGGCT 60.035 55.000 0.00 0.00 39.30 4.58
161 162 2.841266 TGGTGTCCGATAAAAGGGATCA 59.159 45.455 0.00 0.00 34.25 2.92
264 267 1.670059 GGGAAGGAGAAAGGGAAGGA 58.330 55.000 0.00 0.00 0.00 3.36
406 409 1.063764 GCACGGTCGTAAAACACCAAA 59.936 47.619 0.00 0.00 32.33 3.28
408 411 1.489070 CGCACGGTCGTAAAACACCA 61.489 55.000 0.00 0.00 32.33 4.17
409 412 1.202320 CGCACGGTCGTAAAACACC 59.798 57.895 0.00 0.00 0.00 4.16
410 413 1.437573 GCGCACGGTCGTAAAACAC 60.438 57.895 0.30 0.00 0.00 3.32
411 414 2.596795 GGCGCACGGTCGTAAAACA 61.597 57.895 10.83 0.00 0.00 2.83
412 415 2.171701 GGCGCACGGTCGTAAAAC 59.828 61.111 10.83 0.00 0.00 2.43
425 428 4.840005 GTGTGCTCCCTAGGGCGC 62.840 72.222 32.17 32.17 45.44 6.53
426 429 3.376935 CTGTGTGCTCCCTAGGGCG 62.377 68.421 24.42 19.13 34.68 6.13
427 430 1.553690 TTCTGTGTGCTCCCTAGGGC 61.554 60.000 24.42 13.14 34.68 5.19
429 432 0.539051 CCTTCTGTGTGCTCCCTAGG 59.461 60.000 0.06 0.06 0.00 3.02
430 433 0.107945 GCCTTCTGTGTGCTCCCTAG 60.108 60.000 0.00 0.00 0.00 3.02
431 434 0.545309 AGCCTTCTGTGTGCTCCCTA 60.545 55.000 0.00 0.00 0.00 3.53
432 435 1.422161 AAGCCTTCTGTGTGCTCCCT 61.422 55.000 0.00 0.00 33.36 4.20
433 436 0.957888 GAAGCCTTCTGTGTGCTCCC 60.958 60.000 0.00 0.00 33.36 4.30
434 437 0.036022 AGAAGCCTTCTGTGTGCTCC 59.964 55.000 6.08 0.00 38.91 4.70
435 438 3.621953 AGAAGCCTTCTGTGTGCTC 57.378 52.632 6.08 0.00 38.91 4.26
451 454 1.345415 GTCGTTAACCCTTCCACCAGA 59.655 52.381 0.00 0.00 0.00 3.86
452 455 1.804601 GTCGTTAACCCTTCCACCAG 58.195 55.000 0.00 0.00 0.00 4.00
453 456 0.033781 CGTCGTTAACCCTTCCACCA 59.966 55.000 0.00 0.00 0.00 4.17
454 457 0.318120 TCGTCGTTAACCCTTCCACC 59.682 55.000 0.00 0.00 0.00 4.61
455 458 1.670967 CCTCGTCGTTAACCCTTCCAC 60.671 57.143 0.00 0.00 0.00 4.02
457 460 0.738762 GCCTCGTCGTTAACCCTTCC 60.739 60.000 0.00 0.00 0.00 3.46
460 463 1.888736 GAGCCTCGTCGTTAACCCT 59.111 57.895 0.00 0.00 0.00 4.34
461 464 1.515736 CGAGCCTCGTCGTTAACCC 60.516 63.158 5.82 0.00 34.72 4.11
462 465 2.157073 GCGAGCCTCGTCGTTAACC 61.157 63.158 16.50 0.00 42.81 2.85
463 466 2.494591 CGCGAGCCTCGTCGTTAAC 61.495 63.158 16.50 0.00 42.81 2.01
464 467 1.634757 TACGCGAGCCTCGTCGTTAA 61.635 55.000 30.23 17.44 44.93 2.01
466 469 3.378331 CTACGCGAGCCTCGTCGTT 62.378 63.158 30.23 19.15 44.93 3.85
468 471 2.883468 ATCTACGCGAGCCTCGTCG 61.883 63.158 22.65 22.65 42.81 5.12
469 472 1.369448 CATCTACGCGAGCCTCGTC 60.369 63.158 15.93 7.20 42.81 4.20
470 473 2.716244 CATCTACGCGAGCCTCGT 59.284 61.111 15.93 0.00 42.81 4.18
471 474 2.727647 GCATCTACGCGAGCCTCG 60.728 66.667 15.93 10.36 43.89 4.63
480 483 0.383737 GCTCGTCTCTCGCATCTACG 60.384 60.000 0.00 0.00 39.67 3.51
482 485 0.529992 TCGCTCGTCTCTCGCATCTA 60.530 55.000 0.00 0.00 39.67 1.98
485 488 1.281353 GATCGCTCGTCTCTCGCAT 59.719 57.895 0.00 0.00 39.67 4.73
486 489 2.710086 GATCGCTCGTCTCTCGCA 59.290 61.111 0.00 0.00 39.67 5.10
487 490 2.165362 ATCGATCGCTCGTCTCTCGC 62.165 60.000 11.09 0.00 45.25 5.03
488 491 0.179260 GATCGATCGCTCGTCTCTCG 60.179 60.000 11.09 0.00 45.25 4.04
489 492 0.179260 CGATCGATCGCTCGTCTCTC 60.179 60.000 32.34 0.00 45.25 3.20
491 494 4.408511 CGATCGATCGCTCGTCTC 57.591 61.111 32.34 9.53 45.25 3.36
500 503 3.128938 CACCCCCTTATACTCGATCGATC 59.871 52.174 19.78 15.68 0.00 3.69
501 504 3.090037 CACCCCCTTATACTCGATCGAT 58.910 50.000 19.78 11.36 0.00 3.59
502 505 2.511659 CACCCCCTTATACTCGATCGA 58.488 52.381 18.32 18.32 0.00 3.59
504 507 2.299297 CACCACCCCCTTATACTCGATC 59.701 54.545 0.00 0.00 0.00 3.69
505 508 2.326428 CACCACCCCCTTATACTCGAT 58.674 52.381 0.00 0.00 0.00 3.59
508 511 0.472898 GCCACCACCCCCTTATACTC 59.527 60.000 0.00 0.00 0.00 2.59
509 512 1.342672 CGCCACCACCCCCTTATACT 61.343 60.000 0.00 0.00 0.00 2.12
510 513 1.147600 CGCCACCACCCCCTTATAC 59.852 63.158 0.00 0.00 0.00 1.47
511 514 0.400815 ATCGCCACCACCCCCTTATA 60.401 55.000 0.00 0.00 0.00 0.98
512 515 1.696314 ATCGCCACCACCCCCTTAT 60.696 57.895 0.00 0.00 0.00 1.73
514 517 3.728373 GATCGCCACCACCCCCTT 61.728 66.667 0.00 0.00 0.00 3.95
517 520 3.809374 GATCGATCGCCACCACCCC 62.809 68.421 11.09 0.00 0.00 4.95
518 521 2.280186 GATCGATCGCCACCACCC 60.280 66.667 11.09 0.00 0.00 4.61
519 522 1.300233 GAGATCGATCGCCACCACC 60.300 63.158 19.33 0.00 0.00 4.61
521 524 0.534873 TTTGAGATCGATCGCCACCA 59.465 50.000 23.82 13.16 0.00 4.17
523 526 0.572590 CGTTTGAGATCGATCGCCAC 59.427 55.000 23.82 18.77 0.00 5.01
524 527 0.454196 TCGTTTGAGATCGATCGCCA 59.546 50.000 23.82 19.68 0.00 5.69
525 528 1.124462 CTCGTTTGAGATCGATCGCC 58.876 55.000 23.82 17.58 45.57 5.54
526 529 2.106750 TCTCGTTTGAGATCGATCGC 57.893 50.000 20.73 20.73 46.25 4.58
534 537 3.024547 CCTCCATAGGTCTCGTTTGAGA 58.975 50.000 0.00 0.00 40.53 3.27
535 538 2.482142 GCCTCCATAGGTCTCGTTTGAG 60.482 54.545 0.00 0.00 45.64 3.02
536 539 1.480954 GCCTCCATAGGTCTCGTTTGA 59.519 52.381 0.00 0.00 45.64 2.69
538 541 1.482593 CTGCCTCCATAGGTCTCGTTT 59.517 52.381 0.00 0.00 45.64 3.60
539 542 1.115467 CTGCCTCCATAGGTCTCGTT 58.885 55.000 0.00 0.00 45.64 3.85
540 543 0.259065 TCTGCCTCCATAGGTCTCGT 59.741 55.000 0.00 0.00 45.64 4.18
541 544 0.671251 GTCTGCCTCCATAGGTCTCG 59.329 60.000 0.00 0.00 45.64 4.04
542 545 1.044611 GGTCTGCCTCCATAGGTCTC 58.955 60.000 0.00 0.00 45.64 3.36
543 546 0.757188 CGGTCTGCCTCCATAGGTCT 60.757 60.000 0.00 0.00 45.64 3.85
544 547 1.742768 CGGTCTGCCTCCATAGGTC 59.257 63.158 0.00 0.00 45.64 3.85
546 549 2.423446 GCGGTCTGCCTCCATAGG 59.577 66.667 0.00 0.00 46.76 2.57
547 550 2.028190 CGCGGTCTGCCTCCATAG 59.972 66.667 0.00 0.00 42.08 2.23
558 561 2.624437 ATTAGGGTTCGAGCGCGGTC 62.624 60.000 27.52 27.52 38.28 4.79
559 562 2.624437 GATTAGGGTTCGAGCGCGGT 62.624 60.000 12.23 12.23 38.28 5.68
560 563 1.949631 GATTAGGGTTCGAGCGCGG 60.950 63.158 10.69 0.00 38.28 6.46
561 564 2.293627 CGATTAGGGTTCGAGCGCG 61.294 63.158 2.41 2.41 38.88 6.86
562 565 2.586773 GCGATTAGGGTTCGAGCGC 61.587 63.158 8.31 8.31 38.88 5.92
564 567 0.597898 GAGGCGATTAGGGTTCGAGC 60.598 60.000 0.00 0.00 38.88 5.03
565 568 0.032267 GGAGGCGATTAGGGTTCGAG 59.968 60.000 0.00 0.00 38.88 4.04
568 571 1.035139 TACGGAGGCGATTAGGGTTC 58.965 55.000 0.00 0.00 0.00 3.62
569 572 1.488390 TTACGGAGGCGATTAGGGTT 58.512 50.000 0.00 0.00 0.00 4.11
570 573 1.617357 GATTACGGAGGCGATTAGGGT 59.383 52.381 0.00 0.00 0.00 4.34
571 574 1.402456 CGATTACGGAGGCGATTAGGG 60.402 57.143 0.00 0.00 35.72 3.53
572 575 1.538512 TCGATTACGGAGGCGATTAGG 59.461 52.381 0.00 0.00 40.21 2.69
573 576 2.582687 GTCGATTACGGAGGCGATTAG 58.417 52.381 0.00 0.00 40.21 1.73
574 577 2.693797 GTCGATTACGGAGGCGATTA 57.306 50.000 0.00 0.00 40.21 1.75
575 578 3.564455 GTCGATTACGGAGGCGATT 57.436 52.632 0.00 0.00 40.21 3.34
585 588 1.070309 ACGTATCGCTCCGTCGATTAC 60.070 52.381 9.19 5.96 45.81 1.89
587 590 1.220529 TACGTATCGCTCCGTCGATT 58.779 50.000 9.19 0.00 45.81 3.34
589 592 1.006086 TTTACGTATCGCTCCGTCGA 58.994 50.000 0.00 0.00 43.09 4.20
591 594 2.279921 GGTTTTTACGTATCGCTCCGTC 59.720 50.000 0.00 0.00 38.43 4.79
592 595 2.262211 GGTTTTTACGTATCGCTCCGT 58.738 47.619 0.00 0.00 40.87 4.69
593 596 1.253545 CGGTTTTTACGTATCGCTCCG 59.746 52.381 0.00 4.38 0.00 4.63
594 597 2.262211 ACGGTTTTTACGTATCGCTCC 58.738 47.619 0.00 0.00 43.60 4.70
595 598 2.916716 TGACGGTTTTTACGTATCGCTC 59.083 45.455 0.00 0.00 45.68 5.03
597 600 2.222574 GGTGACGGTTTTTACGTATCGC 60.223 50.000 0.00 0.00 45.68 4.58
598 601 2.345341 GGGTGACGGTTTTTACGTATCG 59.655 50.000 0.00 0.00 45.68 2.92
599 602 2.345341 CGGGTGACGGTTTTTACGTATC 59.655 50.000 0.00 0.00 45.68 2.24
601 604 1.338337 TCGGGTGACGGTTTTTACGTA 59.662 47.619 0.00 0.00 45.68 3.57
603 606 1.192980 CTTCGGGTGACGGTTTTTACG 59.807 52.381 0.00 0.00 44.45 3.18
604 607 1.532437 CCTTCGGGTGACGGTTTTTAC 59.468 52.381 0.00 0.00 44.45 2.01
605 608 1.542987 CCCTTCGGGTGACGGTTTTTA 60.543 52.381 0.00 0.00 44.45 1.52
606 609 0.820482 CCCTTCGGGTGACGGTTTTT 60.820 55.000 0.00 0.00 44.45 1.94
607 610 1.228033 CCCTTCGGGTGACGGTTTT 60.228 57.895 0.00 0.00 44.45 2.43
609 612 2.524887 TCCCTTCGGGTGACGGTT 60.525 61.111 0.00 0.00 44.74 4.44
610 613 3.308705 GTCCCTTCGGGTGACGGT 61.309 66.667 0.00 0.00 44.74 4.83
611 614 4.430765 CGTCCCTTCGGGTGACGG 62.431 72.222 13.92 0.00 45.79 4.79
625 628 1.080705 CAGACGACAAGGGTCCGTC 60.081 63.158 0.00 0.00 42.51 4.79
626 629 1.524863 CTCAGACGACAAGGGTCCGT 61.525 60.000 0.00 0.00 41.13 4.69
629 632 0.109689 CGACTCAGACGACAAGGGTC 60.110 60.000 0.00 0.00 40.77 4.46
630 633 0.536687 TCGACTCAGACGACAAGGGT 60.537 55.000 0.00 0.00 34.85 4.34
631 634 0.596577 TTCGACTCAGACGACAAGGG 59.403 55.000 0.00 0.00 39.46 3.95
632 635 1.970447 CTTCGACTCAGACGACAAGG 58.030 55.000 0.00 0.00 39.46 3.61
633 636 1.332178 GCTTCGACTCAGACGACAAG 58.668 55.000 0.00 0.00 39.46 3.16
634 637 0.039437 GGCTTCGACTCAGACGACAA 60.039 55.000 0.00 0.00 39.46 3.18
635 638 0.889638 AGGCTTCGACTCAGACGACA 60.890 55.000 0.00 0.00 39.46 4.35
636 639 0.241481 AAGGCTTCGACTCAGACGAC 59.759 55.000 0.00 0.00 39.46 4.34
637 640 0.959553 AAAGGCTTCGACTCAGACGA 59.040 50.000 0.00 0.00 37.99 4.20
638 641 1.784525 AAAAGGCTTCGACTCAGACG 58.215 50.000 0.00 0.00 0.00 4.18
639 642 3.056749 TCCTAAAAGGCTTCGACTCAGAC 60.057 47.826 0.00 0.00 34.61 3.51
641 644 3.056465 ACTCCTAAAAGGCTTCGACTCAG 60.056 47.826 0.00 0.00 34.61 3.35
656 6337 1.552337 CAGCTCCAGCAGAACTCCTAA 59.448 52.381 0.48 0.00 45.16 2.69
696 6377 2.014128 CCTCTCTCTCTCGAACTGTCC 58.986 57.143 0.00 0.00 0.00 4.02
715 6396 2.570135 GATTCCTGTCAGGATTGCTCC 58.430 52.381 22.45 3.74 45.34 4.70
737 6418 3.885901 GCCCAAGATTATCTTCTTCCCAC 59.114 47.826 4.24 0.00 33.78 4.61
773 6455 2.267642 CTTCCGGGCGATGGACAA 59.732 61.111 0.00 0.00 34.56 3.18
782 6464 1.334160 TTTTTCCTTTCCTTCCGGGC 58.666 50.000 0.00 0.00 34.39 6.13
803 6485 2.366916 GCTATCAGCTGGGAGTGTATGT 59.633 50.000 15.13 0.00 38.45 2.29
808 6490 1.449353 GGGCTATCAGCTGGGAGTG 59.551 63.158 15.13 1.48 41.99 3.51
870 6565 7.718753 AGAAATCACTTCTGTTCTTGAACTCAT 59.281 33.333 13.65 0.00 43.09 2.90
987 6688 4.100084 CCCATGGGCGAGCAGACA 62.100 66.667 20.41 0.00 0.00 3.41
1021 6730 2.505777 CTGCAGAGACACGAGCCG 60.506 66.667 8.42 0.00 0.00 5.52
1071 6780 3.009033 TCGACATCTTTTTCCCACCTGAT 59.991 43.478 0.00 0.00 0.00 2.90
1171 6911 2.564975 CGTAAGCCGACGACCTGT 59.435 61.111 0.00 0.00 45.82 4.00
1217 6960 2.894765 TCGTCATCTTGTTGACAGGGTA 59.105 45.455 11.01 0.00 45.08 3.69
1218 6961 1.691976 TCGTCATCTTGTTGACAGGGT 59.308 47.619 11.01 0.00 45.08 4.34
1255 6998 2.159379 CCGTTCTCCTAATTTTGCCAGC 60.159 50.000 0.00 0.00 0.00 4.85
1356 7100 9.894783 GCATAGTCACGAGAATTAATTAGTCTA 57.105 33.333 0.00 2.39 0.00 2.59
1389 7133 2.761392 TCATGCTTGCGATAACATGC 57.239 45.000 0.00 0.00 39.75 4.06
1390 7134 5.253335 CGATATCATGCTTGCGATAACATG 58.747 41.667 3.12 0.00 40.97 3.21
1391 7135 4.201753 GCGATATCATGCTTGCGATAACAT 60.202 41.667 3.12 0.00 0.00 2.71
1392 7136 3.123453 GCGATATCATGCTTGCGATAACA 59.877 43.478 3.12 0.00 0.00 2.41
1393 7137 3.369147 AGCGATATCATGCTTGCGATAAC 59.631 43.478 3.12 0.00 38.57 1.89
1394 7138 3.368843 CAGCGATATCATGCTTGCGATAA 59.631 43.478 3.12 0.00 40.03 1.75
1395 7139 2.925563 CAGCGATATCATGCTTGCGATA 59.074 45.455 3.12 0.00 40.03 2.92
1396 7140 1.730612 CAGCGATATCATGCTTGCGAT 59.269 47.619 3.12 0.00 40.03 4.58
1397 7141 1.142474 CAGCGATATCATGCTTGCGA 58.858 50.000 3.12 0.00 40.03 5.10
1398 7142 0.452287 GCAGCGATATCATGCTTGCG 60.452 55.000 18.23 4.16 40.03 4.85
1399 7143 0.589708 TGCAGCGATATCATGCTTGC 59.410 50.000 23.20 18.37 40.03 4.01
1400 7144 2.225727 ACATGCAGCGATATCATGCTTG 59.774 45.455 27.20 27.20 45.47 4.01
1401 7145 2.501261 ACATGCAGCGATATCATGCTT 58.499 42.857 23.20 17.11 40.03 3.91
1402 7146 2.180432 ACATGCAGCGATATCATGCT 57.820 45.000 23.20 13.45 43.58 3.79
1403 7147 2.983402 AACATGCAGCGATATCATGC 57.017 45.000 18.53 18.53 40.76 4.06
1404 7148 6.034898 TCGTAATAACATGCAGCGATATCATG 59.965 38.462 11.88 11.88 42.27 3.07
1405 7149 6.099341 TCGTAATAACATGCAGCGATATCAT 58.901 36.000 3.12 0.00 0.00 2.45
1406 7150 5.465935 TCGTAATAACATGCAGCGATATCA 58.534 37.500 3.12 0.00 0.00 2.15
1407 7151 6.575083 ATCGTAATAACATGCAGCGATATC 57.425 37.500 0.00 0.00 36.12 1.63
1408 7152 6.968131 AATCGTAATAACATGCAGCGATAT 57.032 33.333 0.00 0.00 36.73 1.63
1409 7153 6.589454 CAAATCGTAATAACATGCAGCGATA 58.411 36.000 0.00 0.00 36.73 2.92
1410 7154 5.443261 CAAATCGTAATAACATGCAGCGAT 58.557 37.500 0.00 0.00 38.92 4.58
1411 7155 4.785025 GCAAATCGTAATAACATGCAGCGA 60.785 41.667 0.00 0.00 0.00 4.93
1412 7156 3.418619 GCAAATCGTAATAACATGCAGCG 59.581 43.478 0.00 0.00 0.00 5.18
1591 7862 6.012113 TCAATGATTTGGAGAGGTTGTGAAT 58.988 36.000 0.00 0.00 33.44 2.57
1613 7889 4.035558 GCACCGCAATAGAAGAATCAATCA 59.964 41.667 0.00 0.00 0.00 2.57
1614 7890 4.531332 GCACCGCAATAGAAGAATCAATC 58.469 43.478 0.00 0.00 0.00 2.67
1615 7891 3.316308 GGCACCGCAATAGAAGAATCAAT 59.684 43.478 0.00 0.00 0.00 2.57
1616 7892 2.682856 GGCACCGCAATAGAAGAATCAA 59.317 45.455 0.00 0.00 0.00 2.57
1752 8032 8.533657 TGCAGAGTTCAATTCATAAATCCAAAT 58.466 29.630 0.00 0.00 0.00 2.32
1955 8463 6.006275 AGGTAAACACAGCAATCCATAGAT 57.994 37.500 0.00 0.00 0.00 1.98
1970 8478 5.466393 GGAACGTAACTTTGCTAGGTAAACA 59.534 40.000 0.00 0.00 0.00 2.83
2002 8511 4.745620 GTGCTGCTTTACATAGTAGGTAGC 59.254 45.833 0.00 3.32 0.00 3.58
2005 8519 4.819105 TGTGCTGCTTTACATAGTAGGT 57.181 40.909 0.00 0.00 0.00 3.08
2024 8538 4.684485 GCATAGTAGCCTTCCACAGATTGT 60.684 45.833 0.00 0.00 0.00 2.71
2029 8543 2.988010 TGCATAGTAGCCTTCCACAG 57.012 50.000 0.00 0.00 0.00 3.66
2031 8545 3.947834 ACAATTGCATAGTAGCCTTCCAC 59.052 43.478 5.05 0.00 0.00 4.02
2033 8547 3.947834 ACACAATTGCATAGTAGCCTTCC 59.052 43.478 5.05 0.00 0.00 3.46
2034 8548 4.201950 CCACACAATTGCATAGTAGCCTTC 60.202 45.833 5.05 0.00 0.00 3.46
2035 8549 3.696051 CCACACAATTGCATAGTAGCCTT 59.304 43.478 5.05 0.00 0.00 4.35
2036 8550 3.054434 TCCACACAATTGCATAGTAGCCT 60.054 43.478 5.05 0.00 0.00 4.58
2037 8551 3.278574 TCCACACAATTGCATAGTAGCC 58.721 45.455 5.05 0.00 0.00 3.93
2038 8552 3.313526 CCTCCACACAATTGCATAGTAGC 59.686 47.826 5.05 0.00 0.00 3.58
2039 8553 3.879295 CCCTCCACACAATTGCATAGTAG 59.121 47.826 5.05 0.00 0.00 2.57
2040 8554 3.884895 CCCTCCACACAATTGCATAGTA 58.115 45.455 5.05 0.00 0.00 1.82
2041 8555 2.726821 CCCTCCACACAATTGCATAGT 58.273 47.619 5.05 0.00 0.00 2.12
2072 8586 6.534475 AGAACCACACGGAGTAACATTATA 57.466 37.500 0.00 0.00 41.61 0.98
2169 8696 6.819146 TGTATACGAAACAATATGTCCTGCAA 59.181 34.615 0.00 0.00 0.00 4.08
2243 8770 3.078837 TCTCCACGAATGTAAAAAGGCC 58.921 45.455 0.00 0.00 0.00 5.19
2355 8882 1.838112 TCTTCCGAGCCAATTGCATT 58.162 45.000 0.00 0.00 44.83 3.56
2358 8885 1.541588 ACTTTCTTCCGAGCCAATTGC 59.458 47.619 0.00 0.00 41.71 3.56
2370 8897 4.592485 TCTCTCCACTCACACTTTCTTC 57.408 45.455 0.00 0.00 0.00 2.87
2665 9195 1.202582 GTCTAAGGCACTGAAGCGAGA 59.797 52.381 0.00 0.00 40.86 4.04
2900 9430 3.578282 TCAGTCTCAAACTCTGGCATACA 59.422 43.478 0.00 0.00 35.45 2.29
2912 9442 6.000219 AGCTTTGCTTTCTATCAGTCTCAAA 59.000 36.000 0.00 0.00 33.89 2.69
2919 9449 5.633830 TTTGGAGCTTTGCTTTCTATCAG 57.366 39.130 0.00 0.00 39.88 2.90
2958 9488 2.507058 ACCTGCAGCATCCTGATCTAAA 59.493 45.455 8.66 0.00 41.77 1.85
2970 9500 1.970640 TGAGAAGTCTAACCTGCAGCA 59.029 47.619 8.66 0.00 0.00 4.41
2971 9501 2.028567 AGTGAGAAGTCTAACCTGCAGC 60.029 50.000 8.66 0.00 0.00 5.25
2972 9502 3.951775 AGTGAGAAGTCTAACCTGCAG 57.048 47.619 6.78 6.78 0.00 4.41
3039 9569 4.530710 TGGTACGGGCATCATAGATAAC 57.469 45.455 0.00 0.00 0.00 1.89
3057 9587 1.125711 AGAACGGGTGGTAGCTTGGT 61.126 55.000 0.00 0.00 0.00 3.67
3172 9708 8.684520 AGACACTACACCAGTTATGACTAATAC 58.315 37.037 0.00 0.00 34.26 1.89
3184 9726 2.232452 GCATCAGAGACACTACACCAGT 59.768 50.000 0.00 0.00 38.32 4.00
3190 9736 4.753233 ACTTCATGCATCAGAGACACTAC 58.247 43.478 9.06 0.00 0.00 2.73
3204 9750 1.334556 TGCACACACAGAACTTCATGC 59.665 47.619 0.00 0.00 0.00 4.06
3214 9760 0.747644 TCAACCACCTGCACACACAG 60.748 55.000 0.00 0.00 37.42 3.66
3301 9851 0.468226 TCATATGCCCCAGAACCGTC 59.532 55.000 0.00 0.00 0.00 4.79
3615 10267 6.367969 ACACCGTGTTCTTGAGAATATAACAC 59.632 38.462 0.00 0.00 43.98 3.32
3723 10392 4.352298 GGGGTTTCCATGAGAATAGGATCT 59.648 45.833 0.00 0.00 33.44 2.75
3999 10953 5.518848 TCCTTGCAAGCATATTAACATGG 57.481 39.130 21.43 3.52 0.00 3.66
4025 11137 8.514594 CAACAGTATATTTCAACATTGGTCAGT 58.485 33.333 0.00 0.00 0.00 3.41
4045 11157 4.267536 AGCACATCATATCTTGCAACAGT 58.732 39.130 0.00 0.00 37.44 3.55
4072 11185 4.261031 GCCAGTAACAATATACTTTGCGGG 60.261 45.833 0.00 0.00 33.90 6.13
4073 11186 4.334203 TGCCAGTAACAATATACTTTGCGG 59.666 41.667 0.00 0.00 35.42 5.69
4173 11290 4.478203 TCCATGGATTCTTTGGTCAACAA 58.522 39.130 11.44 0.00 37.28 2.83
4349 11469 5.699097 TCTACGGGGAAATTTTGAAACAG 57.301 39.130 0.00 0.00 0.00 3.16
4351 11471 4.217767 AGCTCTACGGGGAAATTTTGAAAC 59.782 41.667 0.00 0.00 0.00 2.78
4359 11479 2.473576 ACCTAGCTCTACGGGGAAAT 57.526 50.000 0.00 0.00 0.00 2.17
4494 11614 9.906660 TTTGTAGGTTCAATGCTTTAATAACAG 57.093 29.630 0.00 0.00 0.00 3.16
4545 11665 0.095417 CGAAAGCTTAAGACCGCTGC 59.905 55.000 6.67 0.00 36.45 5.25
4552 11672 6.208204 AGGAGTAAGTACACGAAAGCTTAAGA 59.792 38.462 6.67 0.00 0.00 2.10
4565 11685 7.241042 AGCTATTTGACAAGGAGTAAGTACA 57.759 36.000 0.00 0.00 0.00 2.90
4603 11727 2.201732 CGAACCGTCCATCTTACCATG 58.798 52.381 0.00 0.00 0.00 3.66
4632 11783 2.695666 AGATTGACCTCATACCCGTCAG 59.304 50.000 0.00 0.00 37.78 3.51
4697 11852 3.317993 AGTTCACCAAAGTTTTCCCATCG 59.682 43.478 0.00 0.00 0.00 3.84
4766 11921 4.349342 CCTCTAGGGCATATTTCCTTCAGT 59.651 45.833 0.00 0.00 34.75 3.41
4767 11922 4.594920 TCCTCTAGGGCATATTTCCTTCAG 59.405 45.833 0.00 0.00 34.75 3.02
4768 11923 4.566837 TCCTCTAGGGCATATTTCCTTCA 58.433 43.478 0.00 0.00 34.75 3.02
4769 11924 5.568620 TTCCTCTAGGGCATATTTCCTTC 57.431 43.478 0.00 0.00 34.75 3.46
4770 11925 5.994416 TTTCCTCTAGGGCATATTTCCTT 57.006 39.130 0.00 0.00 34.75 3.36
4771 11926 7.648177 TTATTTCCTCTAGGGCATATTTCCT 57.352 36.000 0.00 0.00 37.18 3.36
4772 11927 9.975218 TTATTATTTCCTCTAGGGCATATTTCC 57.025 33.333 0.00 0.00 35.41 3.13
4838 11993 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
4839 11994 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
4840 11995 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
4841 11996 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
4842 11997 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
4843 11998 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
4844 11999 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
4845 12000 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
4846 12001 9.104965 TCATGTTTCCGGTTAATACAATTCTAG 57.895 33.333 0.00 0.00 0.00 2.43
4847 12002 9.621629 ATCATGTTTCCGGTTAATACAATTCTA 57.378 29.630 0.00 0.00 0.00 2.10
4848 12003 7.931578 TCATGTTTCCGGTTAATACAATTCT 57.068 32.000 0.00 0.00 0.00 2.40
4849 12004 9.659830 GTATCATGTTTCCGGTTAATACAATTC 57.340 33.333 0.00 0.00 0.00 2.17
4850 12005 9.179909 TGTATCATGTTTCCGGTTAATACAATT 57.820 29.630 0.00 0.00 0.00 2.32
4851 12006 8.740123 TGTATCATGTTTCCGGTTAATACAAT 57.260 30.769 0.00 0.00 0.00 2.71
4852 12007 8.616942 CATGTATCATGTTTCCGGTTAATACAA 58.383 33.333 0.00 0.00 33.52 2.41
4853 12008 7.771361 ACATGTATCATGTTTCCGGTTAATACA 59.229 33.333 0.00 7.97 34.10 2.29
4854 12009 8.067784 CACATGTATCATGTTTCCGGTTAATAC 58.932 37.037 11.89 2.60 0.00 1.89
4855 12010 7.771361 ACACATGTATCATGTTTCCGGTTAATA 59.229 33.333 11.89 0.00 0.00 0.98
4856 12011 6.601613 ACACATGTATCATGTTTCCGGTTAAT 59.398 34.615 11.89 0.00 0.00 1.40
4857 12012 5.941058 ACACATGTATCATGTTTCCGGTTAA 59.059 36.000 11.89 0.00 0.00 2.01
4858 12013 5.352846 CACACATGTATCATGTTTCCGGTTA 59.647 40.000 11.89 0.00 0.00 2.85
4859 12014 4.155826 CACACATGTATCATGTTTCCGGTT 59.844 41.667 11.89 0.00 0.00 4.44
4860 12015 3.689161 CACACATGTATCATGTTTCCGGT 59.311 43.478 11.89 5.17 0.00 5.28
4861 12016 3.938334 TCACACATGTATCATGTTTCCGG 59.062 43.478 11.89 0.00 0.00 5.14
4862 12017 5.544136 TTCACACATGTATCATGTTTCCG 57.456 39.130 11.89 4.94 0.00 4.30
4863 12018 7.984391 TGTATTCACACATGTATCATGTTTCC 58.016 34.615 11.89 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.