Multiple sequence alignment - TraesCS6A01G045700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G045700 chr6A 100.000 3638 0 0 1 3638 23596966 23600603 0.000000e+00 6719.0
1 TraesCS6A01G045700 chr6A 98.267 1327 19 3 1 1327 268199281 268197959 0.000000e+00 2320.0
2 TraesCS6A01G045700 chr6A 97.965 1327 25 2 1 1327 23053823 23052499 0.000000e+00 2300.0
3 TraesCS6A01G045700 chr2A 98.060 2577 36 8 1 2576 734518659 734521222 0.000000e+00 4470.0
4 TraesCS6A01G045700 chr2A 95.228 1844 77 6 849 2686 89922914 89924752 0.000000e+00 2907.0
5 TraesCS6A01G045700 chr2A 95.380 1818 37 19 1071 2841 734535232 734537049 0.000000e+00 2848.0
6 TraesCS6A01G045700 chr2A 96.440 1292 34 7 1 1291 734534235 734535515 0.000000e+00 2121.0
7 TraesCS6A01G045700 chr2A 94.925 1340 43 12 1 1335 10257261 10258580 0.000000e+00 2074.0
8 TraesCS6A01G045700 chr2A 91.837 147 7 5 2743 2887 10259182 10259325 2.220000e-47 200.0
9 TraesCS6A01G045700 chr1A 96.883 1925 52 4 831 2754 540660930 540659013 0.000000e+00 3216.0
10 TraesCS6A01G045700 chr3A 96.778 1924 52 4 831 2754 41413419 41415332 0.000000e+00 3201.0
11 TraesCS6A01G045700 chr3A 95.117 1843 80 6 849 2686 725463822 725465659 0.000000e+00 2896.0
12 TraesCS6A01G045700 chr3A 94.919 1850 91 3 832 2681 723505593 723503747 0.000000e+00 2892.0
13 TraesCS6A01G045700 chr3A 89.167 240 6 8 3334 3562 681366995 681367225 7.690000e-72 281.0
14 TraesCS6A01G045700 chr3A 96.203 79 3 0 3560 3638 668653023 668652945 2.950000e-26 130.0
15 TraesCS6A01G045700 chr3A 94.048 84 3 2 1 84 723559636 723559555 3.810000e-25 126.0
16 TraesCS6A01G045700 chr4A 96.674 1924 56 5 831 2754 449966775 449968690 0.000000e+00 3192.0
17 TraesCS6A01G045700 chr4A 97.101 69 2 0 3570 3638 261415204 261415136 2.300000e-22 117.0
18 TraesCS6A01G045700 chr7B 94.662 1911 84 7 849 2746 704056427 704054522 0.000000e+00 2948.0
19 TraesCS6A01G045700 chr7B 91.667 240 7 7 3334 3562 287733836 287734073 1.630000e-83 320.0
20 TraesCS6A01G045700 chr7B 90.909 198 5 7 3376 3562 711059764 711059959 1.680000e-63 254.0
21 TraesCS6A01G045700 chr7B 94.937 79 4 0 3560 3638 287734207 287734285 1.370000e-24 124.0
22 TraesCS6A01G045700 chr2D 96.491 1767 51 11 956 2716 339729098 339727337 0.000000e+00 2909.0
23 TraesCS6A01G045700 chr2D 97.917 384 8 0 210 593 234257360 234256977 0.000000e+00 665.0
24 TraesCS6A01G045700 chr2D 96.886 289 9 0 3011 3299 517985061 517985349 5.460000e-133 484.0
25 TraesCS6A01G045700 chr2D 98.175 274 4 1 3027 3299 28108526 28108799 9.140000e-131 477.0
26 TraesCS6A01G045700 chr2D 95.848 289 9 2 3011 3299 61505493 61505778 7.120000e-127 464.0
27 TraesCS6A01G045700 chr2D 97.436 273 6 1 3027 3299 594989062 594988791 7.120000e-127 464.0
28 TraesCS6A01G045700 chr2D 95.000 80 2 1 2982 3059 234254150 234254071 1.370000e-24 124.0
29 TraesCS6A01G045700 chr4B 93.773 1911 99 10 849 2746 487297339 487295436 0.000000e+00 2852.0
30 TraesCS6A01G045700 chr4B 91.693 1914 117 21 999 2900 401037431 401039314 0.000000e+00 2615.0
31 TraesCS6A01G045700 chr4B 94.702 151 8 0 2905 3055 401039887 401040037 6.070000e-58 235.0
32 TraesCS6A01G045700 chr2B 94.589 1811 64 6 1 1781 155884760 155882954 0.000000e+00 2771.0
33 TraesCS6A01G045700 chr2B 91.083 1043 34 24 2120 3141 155882954 155881950 0.000000e+00 1356.0
34 TraesCS6A01G045700 chr2B 97.917 144 2 1 3495 3638 155881953 155881811 7.800000e-62 248.0
35 TraesCS6A01G045700 chr2B 86.093 151 18 3 2731 2880 241399003 241399151 3.760000e-35 159.0
36 TraesCS6A01G045700 chr2B 92.405 79 6 0 3560 3638 303911316 303911394 2.970000e-21 113.0
37 TraesCS6A01G045700 chr7A 98.041 1327 24 2 1 1327 130652834 130651510 0.000000e+00 2305.0
38 TraesCS6A01G045700 chr7A 92.460 252 7 6 3322 3562 688310025 688309775 2.080000e-92 350.0
39 TraesCS6A01G045700 chr7A 92.083 240 6 7 3334 3562 542630433 542630670 3.500000e-85 326.0
40 TraesCS6A01G045700 chr7A 91.250 240 8 7 3334 3562 554387500 554387737 7.580000e-82 315.0
41 TraesCS6A01G045700 chr7A 94.611 167 4 5 2743 2907 582033643 582033806 1.680000e-63 254.0
42 TraesCS6A01G045700 chr7A 96.203 79 3 0 3560 3638 554387880 554387958 2.950000e-26 130.0
43 TraesCS6A01G045700 chr7A 96.250 80 2 1 3560 3638 688309631 688309552 2.950000e-26 130.0
44 TraesCS6A01G045700 chr7A 94.937 79 4 0 3560 3638 542630813 542630891 1.370000e-24 124.0
45 TraesCS6A01G045700 chr1D 97.444 1330 27 4 1 1327 200755101 200756426 0.000000e+00 2261.0
46 TraesCS6A01G045700 chr1D 97.436 273 6 1 3027 3299 164907663 164907392 7.120000e-127 464.0
47 TraesCS6A01G045700 chr1D 91.946 149 9 3 2761 2907 185095477 185095624 4.760000e-49 206.0
48 TraesCS6A01G045700 chr1D 89.916 119 8 4 2762 2878 201984184 201984068 2.260000e-32 150.0
49 TraesCS6A01G045700 chr6B 94.984 1256 41 11 1 1255 481014577 481015811 0.000000e+00 1951.0
50 TraesCS6A01G045700 chr6B 96.456 395 13 1 2905 3299 83263419 83263812 0.000000e+00 651.0
51 TraesCS6A01G045700 chr6B 96.203 395 14 1 2905 3299 83250502 83250895 0.000000e+00 645.0
52 TraesCS6A01G045700 chr6B 92.083 240 6 7 3334 3562 93271114 93271351 3.500000e-85 326.0
53 TraesCS6A01G045700 chr6B 100.000 96 0 0 589 684 83249172 83249267 1.040000e-40 178.0
54 TraesCS6A01G045700 chr3D 96.540 289 8 2 3011 3299 510141711 510141997 9.140000e-131 477.0
55 TraesCS6A01G045700 chr3D 93.269 104 5 2 2762 2864 89273759 89273657 6.290000e-33 152.0
56 TraesCS6A01G045700 chrUn 96.703 273 9 0 3027 3299 114694290 114694562 4.280000e-124 455.0
57 TraesCS6A01G045700 chr6D 93.651 252 4 6 3322 3562 323972141 323972391 2.060000e-97 366.0
58 TraesCS6A01G045700 chr6D 97.159 176 5 0 2905 3080 272763834 272764009 7.640000e-77 298.0
59 TraesCS6A01G045700 chr6D 94.937 79 4 0 3560 3638 323972535 323972613 1.370000e-24 124.0
60 TraesCS6A01G045700 chr5A 92.083 240 6 7 3334 3562 259065984 259065747 3.500000e-85 326.0
61 TraesCS6A01G045700 chr4D 91.667 144 8 4 2743 2885 63265234 63265374 2.870000e-46 196.0
62 TraesCS6A01G045700 chr4D 94.231 52 2 1 2982 3032 308492499 308492448 1.080000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G045700 chr6A 23596966 23600603 3637 False 6719.000000 6719 100.000000 1 3638 1 chr6A.!!$F1 3637
1 TraesCS6A01G045700 chr6A 268197959 268199281 1322 True 2320.000000 2320 98.267000 1 1327 1 chr6A.!!$R2 1326
2 TraesCS6A01G045700 chr6A 23052499 23053823 1324 True 2300.000000 2300 97.965000 1 1327 1 chr6A.!!$R1 1326
3 TraesCS6A01G045700 chr2A 734518659 734521222 2563 False 4470.000000 4470 98.060000 1 2576 1 chr2A.!!$F2 2575
4 TraesCS6A01G045700 chr2A 89922914 89924752 1838 False 2907.000000 2907 95.228000 849 2686 1 chr2A.!!$F1 1837
5 TraesCS6A01G045700 chr2A 734534235 734537049 2814 False 2484.500000 2848 95.910000 1 2841 2 chr2A.!!$F4 2840
6 TraesCS6A01G045700 chr2A 10257261 10259325 2064 False 1137.000000 2074 93.381000 1 2887 2 chr2A.!!$F3 2886
7 TraesCS6A01G045700 chr1A 540659013 540660930 1917 True 3216.000000 3216 96.883000 831 2754 1 chr1A.!!$R1 1923
8 TraesCS6A01G045700 chr3A 41413419 41415332 1913 False 3201.000000 3201 96.778000 831 2754 1 chr3A.!!$F1 1923
9 TraesCS6A01G045700 chr3A 725463822 725465659 1837 False 2896.000000 2896 95.117000 849 2686 1 chr3A.!!$F3 1837
10 TraesCS6A01G045700 chr3A 723503747 723505593 1846 True 2892.000000 2892 94.919000 832 2681 1 chr3A.!!$R2 1849
11 TraesCS6A01G045700 chr4A 449966775 449968690 1915 False 3192.000000 3192 96.674000 831 2754 1 chr4A.!!$F1 1923
12 TraesCS6A01G045700 chr7B 704054522 704056427 1905 True 2948.000000 2948 94.662000 849 2746 1 chr7B.!!$R1 1897
13 TraesCS6A01G045700 chr2D 339727337 339729098 1761 True 2909.000000 2909 96.491000 956 2716 1 chr2D.!!$R1 1760
14 TraesCS6A01G045700 chr2D 234254071 234257360 3289 True 394.500000 665 96.458500 210 3059 2 chr2D.!!$R3 2849
15 TraesCS6A01G045700 chr4B 487295436 487297339 1903 True 2852.000000 2852 93.773000 849 2746 1 chr4B.!!$R1 1897
16 TraesCS6A01G045700 chr4B 401037431 401040037 2606 False 1425.000000 2615 93.197500 999 3055 2 chr4B.!!$F1 2056
17 TraesCS6A01G045700 chr2B 155881811 155884760 2949 True 1458.333333 2771 94.529667 1 3638 3 chr2B.!!$R1 3637
18 TraesCS6A01G045700 chr7A 130651510 130652834 1324 True 2305.000000 2305 98.041000 1 1327 1 chr7A.!!$R1 1326
19 TraesCS6A01G045700 chr1D 200755101 200756426 1325 False 2261.000000 2261 97.444000 1 1327 1 chr1D.!!$F2 1326
20 TraesCS6A01G045700 chr6B 481014577 481015811 1234 False 1951.000000 1951 94.984000 1 1255 1 chr6B.!!$F3 1254
21 TraesCS6A01G045700 chr6B 83249172 83250895 1723 False 411.500000 645 98.101500 589 3299 2 chr6B.!!$F4 2710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 4.687948 CCTAGTCTGAACATGTCACAACAG 59.312 45.833 0.00 4.89 39.20 3.16 F
747 800 7.072030 CACTAGTTGTCAACAAGAAATACAGC 58.928 38.462 17.78 0.00 36.39 4.40 F
752 805 7.816995 AGTTGTCAACAAGAAATACAGCAAAAA 59.183 29.630 17.78 0.00 36.39 1.94 F
2500 3429 6.070021 AGTCATGGTGGAAGTGATGAAAGATA 60.070 38.462 0.00 0.00 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 2512 1.535204 ATTGGCTTGAAACTGGGCCG 61.535 55.0 0.00 0.0 46.72 6.13 R
2500 3429 5.416013 GCAGCTTATAGTTGTTTCCTCCTTT 59.584 40.0 0.00 0.0 0.00 3.11 R
2563 3492 5.493809 ACTGCAGTATACACCGGTTATTTT 58.506 37.5 20.16 0.0 0.00 1.82 R
3481 5344 0.615850 GCAGGGTTACTTCAGAGGCT 59.384 55.0 0.00 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 4.687948 CCTAGTCTGAACATGTCACAACAG 59.312 45.833 0.00 4.89 39.20 3.16
747 800 7.072030 CACTAGTTGTCAACAAGAAATACAGC 58.928 38.462 17.78 0.00 36.39 4.40
752 805 7.816995 AGTTGTCAACAAGAAATACAGCAAAAA 59.183 29.630 17.78 0.00 36.39 1.94
954 1015 8.255394 TGTTATGATTATATGCTCACCATTCG 57.745 34.615 0.00 0.00 35.34 3.34
1804 2512 8.378565 TGGATGAAAGATGGATATTAAGTCCTC 58.621 37.037 10.15 6.29 36.68 3.71
2500 3429 6.070021 AGTCATGGTGGAAGTGATGAAAGATA 60.070 38.462 0.00 0.00 0.00 1.98
2563 3492 3.368427 CCGTCTACAAAATGCTGGAGAGA 60.368 47.826 0.00 0.00 36.94 3.10
2721 3699 4.002316 TGTGTCATGTGTCATGTGTATGG 58.998 43.478 9.13 0.00 34.97 2.74
2728 3706 1.811965 TGTCATGTGTATGGCTTGTGC 59.188 47.619 0.00 0.00 39.65 4.57
3092 4955 7.786030 AGCTACAGAACATACACTGTATTCAT 58.214 34.615 0.00 0.00 44.76 2.57
3176 5039 5.471556 TGCATTTCAATCAGACCAAATGT 57.528 34.783 10.30 0.00 38.14 2.71
3285 5148 6.479990 CAGTGAGTACATGTCACAAGAAAAGA 59.520 38.462 16.02 0.00 45.76 2.52
3299 5162 6.151648 CACAAGAAAAGAGGAGCCATATCAAA 59.848 38.462 0.00 0.00 0.00 2.69
3300 5163 6.721208 ACAAGAAAAGAGGAGCCATATCAAAA 59.279 34.615 0.00 0.00 0.00 2.44
3301 5164 7.398332 ACAAGAAAAGAGGAGCCATATCAAAAT 59.602 33.333 0.00 0.00 0.00 1.82
3302 5165 7.968014 AGAAAAGAGGAGCCATATCAAAATT 57.032 32.000 0.00 0.00 0.00 1.82
3303 5166 9.479549 AAGAAAAGAGGAGCCATATCAAAATTA 57.520 29.630 0.00 0.00 0.00 1.40
3304 5167 8.907885 AGAAAAGAGGAGCCATATCAAAATTAC 58.092 33.333 0.00 0.00 0.00 1.89
3305 5168 8.593945 AAAAGAGGAGCCATATCAAAATTACA 57.406 30.769 0.00 0.00 0.00 2.41
3306 5169 8.593945 AAAGAGGAGCCATATCAAAATTACAA 57.406 30.769 0.00 0.00 0.00 2.41
3307 5170 8.773033 AAGAGGAGCCATATCAAAATTACAAT 57.227 30.769 0.00 0.00 0.00 2.71
3308 5171 8.773033 AGAGGAGCCATATCAAAATTACAATT 57.227 30.769 0.00 0.00 0.00 2.32
3309 5172 9.866655 AGAGGAGCCATATCAAAATTACAATTA 57.133 29.630 0.00 0.00 0.00 1.40
3310 5173 9.899226 GAGGAGCCATATCAAAATTACAATTAC 57.101 33.333 0.00 0.00 0.00 1.89
3311 5174 9.420118 AGGAGCCATATCAAAATTACAATTACA 57.580 29.630 0.00 0.00 0.00 2.41
3312 5175 9.463443 GGAGCCATATCAAAATTACAATTACAC 57.537 33.333 0.00 0.00 0.00 2.90
3335 5198 9.515226 ACACTAAATTTTACTATGCTCCAGAAA 57.485 29.630 0.00 0.00 0.00 2.52
3343 5206 9.733556 TTTTACTATGCTCCAGAAATAAGAACA 57.266 29.630 0.00 0.00 0.00 3.18
3344 5207 9.733556 TTTACTATGCTCCAGAAATAAGAACAA 57.266 29.630 0.00 0.00 0.00 2.83
3345 5208 7.856145 ACTATGCTCCAGAAATAAGAACAAG 57.144 36.000 0.00 0.00 0.00 3.16
3346 5209 6.825721 ACTATGCTCCAGAAATAAGAACAAGG 59.174 38.462 0.00 0.00 0.00 3.61
3347 5210 4.335416 TGCTCCAGAAATAAGAACAAGGG 58.665 43.478 0.00 0.00 0.00 3.95
3348 5211 4.042809 TGCTCCAGAAATAAGAACAAGGGA 59.957 41.667 0.00 0.00 0.00 4.20
3349 5212 5.010282 GCTCCAGAAATAAGAACAAGGGAA 58.990 41.667 0.00 0.00 0.00 3.97
3350 5213 5.654209 GCTCCAGAAATAAGAACAAGGGAAT 59.346 40.000 0.00 0.00 0.00 3.01
3351 5214 6.153510 GCTCCAGAAATAAGAACAAGGGAATT 59.846 38.462 0.00 0.00 0.00 2.17
3352 5215 7.629437 GCTCCAGAAATAAGAACAAGGGAATTC 60.629 40.741 0.00 0.00 0.00 2.17
3353 5216 7.237982 TCCAGAAATAAGAACAAGGGAATTCA 58.762 34.615 7.93 0.00 0.00 2.57
3354 5217 7.728083 TCCAGAAATAAGAACAAGGGAATTCAA 59.272 33.333 7.93 0.00 0.00 2.69
3355 5218 8.534496 CCAGAAATAAGAACAAGGGAATTCAAT 58.466 33.333 7.93 0.00 0.00 2.57
3356 5219 9.933723 CAGAAATAAGAACAAGGGAATTCAATT 57.066 29.630 7.93 0.00 0.00 2.32
3362 5225 8.437360 AAGAACAAGGGAATTCAATTTCAAAC 57.563 30.769 7.93 0.00 0.00 2.93
3363 5226 7.795047 AGAACAAGGGAATTCAATTTCAAACT 58.205 30.769 7.93 0.00 0.00 2.66
3364 5227 7.712205 AGAACAAGGGAATTCAATTTCAAACTG 59.288 33.333 7.93 0.00 0.00 3.16
3365 5228 7.123355 ACAAGGGAATTCAATTTCAAACTGA 57.877 32.000 7.93 0.00 0.00 3.41
3366 5229 7.738847 ACAAGGGAATTCAATTTCAAACTGAT 58.261 30.769 7.93 0.00 0.00 2.90
3367 5230 8.869109 ACAAGGGAATTCAATTTCAAACTGATA 58.131 29.630 7.93 0.00 0.00 2.15
3368 5231 9.362539 CAAGGGAATTCAATTTCAAACTGATAG 57.637 33.333 7.93 0.00 0.00 2.08
3369 5232 8.884124 AGGGAATTCAATTTCAAACTGATAGA 57.116 30.769 7.93 0.00 0.00 1.98
3370 5233 8.743714 AGGGAATTCAATTTCAAACTGATAGAC 58.256 33.333 7.93 0.00 0.00 2.59
3371 5234 8.743714 GGGAATTCAATTTCAAACTGATAGACT 58.256 33.333 7.93 0.00 0.00 3.24
3372 5235 9.565213 GGAATTCAATTTCAAACTGATAGACTG 57.435 33.333 7.93 0.00 0.00 3.51
3373 5236 8.976986 AATTCAATTTCAAACTGATAGACTGC 57.023 30.769 0.00 0.00 0.00 4.40
3374 5237 7.509141 TTCAATTTCAAACTGATAGACTGCA 57.491 32.000 0.00 0.00 0.00 4.41
3375 5238 7.137490 TCAATTTCAAACTGATAGACTGCAG 57.863 36.000 13.48 13.48 38.10 4.41
3376 5239 6.936335 TCAATTTCAAACTGATAGACTGCAGA 59.064 34.615 23.35 0.00 36.07 4.26
3377 5240 7.445096 TCAATTTCAAACTGATAGACTGCAGAA 59.555 33.333 23.35 5.62 36.07 3.02
3378 5241 7.750229 ATTTCAAACTGATAGACTGCAGAAA 57.250 32.000 23.35 6.04 36.07 2.52
3379 5242 7.566760 TTTCAAACTGATAGACTGCAGAAAA 57.433 32.000 23.35 4.81 36.07 2.29
3380 5243 6.545504 TCAAACTGATAGACTGCAGAAAAC 57.454 37.500 23.35 8.67 36.07 2.43
3381 5244 6.291377 TCAAACTGATAGACTGCAGAAAACT 58.709 36.000 23.35 15.31 36.07 2.66
3382 5245 6.203530 TCAAACTGATAGACTGCAGAAAACTG 59.796 38.462 23.35 12.93 36.07 3.16
3391 5254 2.070262 GCAGAAAACTGCCACAATCC 57.930 50.000 10.58 0.00 43.99 3.01
3392 5255 1.337167 GCAGAAAACTGCCACAATCCC 60.337 52.381 10.58 0.00 43.99 3.85
3393 5256 2.242043 CAGAAAACTGCCACAATCCCT 58.758 47.619 0.00 0.00 0.00 4.20
3394 5257 2.629617 CAGAAAACTGCCACAATCCCTT 59.370 45.455 0.00 0.00 0.00 3.95
3395 5258 3.826157 CAGAAAACTGCCACAATCCCTTA 59.174 43.478 0.00 0.00 0.00 2.69
3396 5259 4.280677 CAGAAAACTGCCACAATCCCTTAA 59.719 41.667 0.00 0.00 0.00 1.85
3397 5260 4.280929 AGAAAACTGCCACAATCCCTTAAC 59.719 41.667 0.00 0.00 0.00 2.01
3398 5261 3.525800 AACTGCCACAATCCCTTAACT 57.474 42.857 0.00 0.00 0.00 2.24
3399 5262 4.650972 AACTGCCACAATCCCTTAACTA 57.349 40.909 0.00 0.00 0.00 2.24
3400 5263 4.650972 ACTGCCACAATCCCTTAACTAA 57.349 40.909 0.00 0.00 0.00 2.24
3401 5264 4.589908 ACTGCCACAATCCCTTAACTAAG 58.410 43.478 0.00 0.00 0.00 2.18
3402 5265 4.288626 ACTGCCACAATCCCTTAACTAAGA 59.711 41.667 0.00 0.00 35.33 2.10
3403 5266 4.843728 TGCCACAATCCCTTAACTAAGAG 58.156 43.478 0.00 0.00 35.33 2.85
3404 5267 4.288626 TGCCACAATCCCTTAACTAAGAGT 59.711 41.667 0.00 0.00 35.33 3.24
3405 5268 5.222048 TGCCACAATCCCTTAACTAAGAGTT 60.222 40.000 0.00 0.00 41.97 3.01
3406 5269 5.123979 GCCACAATCCCTTAACTAAGAGTTG 59.876 44.000 2.09 3.49 39.11 3.16
3407 5270 6.472887 CCACAATCCCTTAACTAAGAGTTGA 58.527 40.000 2.09 0.00 39.11 3.18
3408 5271 7.112779 CCACAATCCCTTAACTAAGAGTTGAT 58.887 38.462 2.09 0.00 39.11 2.57
3409 5272 8.265055 CCACAATCCCTTAACTAAGAGTTGATA 58.735 37.037 2.09 0.00 39.11 2.15
3410 5273 9.667107 CACAATCCCTTAACTAAGAGTTGATAA 57.333 33.333 2.09 0.00 39.11 1.75
3421 5284 8.336801 ACTAAGAGTTGATAAAAACATGTCCC 57.663 34.615 0.00 0.00 32.21 4.46
3422 5285 8.164070 ACTAAGAGTTGATAAAAACATGTCCCT 58.836 33.333 0.00 0.00 32.21 4.20
3423 5286 9.667107 CTAAGAGTTGATAAAAACATGTCCCTA 57.333 33.333 0.00 0.00 32.21 3.53
3424 5287 8.934023 AAGAGTTGATAAAAACATGTCCCTAA 57.066 30.769 0.00 0.00 32.21 2.69
3425 5288 8.934023 AGAGTTGATAAAAACATGTCCCTAAA 57.066 30.769 0.00 0.00 32.21 1.85
3426 5289 9.362151 AGAGTTGATAAAAACATGTCCCTAAAA 57.638 29.630 0.00 0.00 32.21 1.52
3427 5290 9.406828 GAGTTGATAAAAACATGTCCCTAAAAC 57.593 33.333 0.00 0.00 32.21 2.43
3428 5291 9.143155 AGTTGATAAAAACATGTCCCTAAAACT 57.857 29.630 0.00 2.06 32.21 2.66
3429 5292 9.758651 GTTGATAAAAACATGTCCCTAAAACTT 57.241 29.630 0.00 0.00 0.00 2.66
3435 5298 9.981114 AAAAACATGTCCCTAAAACTTATTCAG 57.019 29.630 0.00 0.00 0.00 3.02
3436 5299 8.706322 AAACATGTCCCTAAAACTTATTCAGT 57.294 30.769 0.00 0.00 37.30 3.41
3437 5300 7.923414 ACATGTCCCTAAAACTTATTCAGTC 57.077 36.000 0.00 0.00 32.94 3.51
3438 5301 7.458397 ACATGTCCCTAAAACTTATTCAGTCA 58.542 34.615 0.00 0.00 32.94 3.41
3439 5302 7.607991 ACATGTCCCTAAAACTTATTCAGTCAG 59.392 37.037 0.00 0.00 32.94 3.51
3440 5303 7.074653 TGTCCCTAAAACTTATTCAGTCAGT 57.925 36.000 0.00 0.00 32.94 3.41
3441 5304 7.514721 TGTCCCTAAAACTTATTCAGTCAGTT 58.485 34.615 0.00 0.00 32.94 3.16
3442 5305 8.653191 TGTCCCTAAAACTTATTCAGTCAGTTA 58.347 33.333 0.00 0.00 32.94 2.24
3443 5306 9.152595 GTCCCTAAAACTTATTCAGTCAGTTAG 57.847 37.037 0.00 0.00 32.94 2.34
3444 5307 9.096823 TCCCTAAAACTTATTCAGTCAGTTAGA 57.903 33.333 0.00 0.00 32.94 2.10
3445 5308 9.892130 CCCTAAAACTTATTCAGTCAGTTAGAT 57.108 33.333 0.00 0.00 32.94 1.98
3448 5311 8.794335 AAAACTTATTCAGTCAGTTAGATCCC 57.206 34.615 0.00 0.00 32.94 3.85
3449 5312 6.487299 ACTTATTCAGTCAGTTAGATCCCC 57.513 41.667 0.00 0.00 0.00 4.81
3450 5313 6.206042 ACTTATTCAGTCAGTTAGATCCCCT 58.794 40.000 0.00 0.00 0.00 4.79
3451 5314 6.098982 ACTTATTCAGTCAGTTAGATCCCCTG 59.901 42.308 0.00 0.00 0.00 4.45
3452 5315 3.474798 TCAGTCAGTTAGATCCCCTGT 57.525 47.619 0.00 0.00 0.00 4.00
3453 5316 3.791320 TCAGTCAGTTAGATCCCCTGTT 58.209 45.455 0.00 0.00 0.00 3.16
3454 5317 4.942944 TCAGTCAGTTAGATCCCCTGTTA 58.057 43.478 0.00 0.00 0.00 2.41
3455 5318 5.338632 TCAGTCAGTTAGATCCCCTGTTAA 58.661 41.667 0.00 0.00 0.00 2.01
3456 5319 5.422331 TCAGTCAGTTAGATCCCCTGTTAAG 59.578 44.000 0.00 0.00 0.00 1.85
3457 5320 5.187967 CAGTCAGTTAGATCCCCTGTTAAGT 59.812 44.000 0.00 0.00 0.00 2.24
3458 5321 5.785940 AGTCAGTTAGATCCCCTGTTAAGTT 59.214 40.000 0.00 0.00 0.00 2.66
3459 5322 6.958192 AGTCAGTTAGATCCCCTGTTAAGTTA 59.042 38.462 0.00 0.00 0.00 2.24
3460 5323 7.456902 AGTCAGTTAGATCCCCTGTTAAGTTAA 59.543 37.037 0.00 0.00 0.00 2.01
3461 5324 7.548427 GTCAGTTAGATCCCCTGTTAAGTTAAC 59.452 40.741 17.26 17.26 39.11 2.01
3462 5325 7.456902 TCAGTTAGATCCCCTGTTAAGTTAACT 59.543 37.037 22.87 1.12 39.38 2.24
3463 5326 7.549488 CAGTTAGATCCCCTGTTAAGTTAACTG 59.451 40.741 22.87 21.43 39.05 3.16
3464 5327 7.456902 AGTTAGATCCCCTGTTAAGTTAACTGA 59.543 37.037 25.75 16.98 39.18 3.41
3465 5328 6.697641 AGATCCCCTGTTAAGTTAACTGAA 57.302 37.500 25.75 4.88 39.18 3.02
3466 5329 7.272144 AGATCCCCTGTTAAGTTAACTGAAT 57.728 36.000 25.75 17.90 39.18 2.57
3467 5330 7.699878 AGATCCCCTGTTAAGTTAACTGAATT 58.300 34.615 25.75 12.61 39.18 2.17
3468 5331 8.832735 AGATCCCCTGTTAAGTTAACTGAATTA 58.167 33.333 25.75 13.28 39.18 1.40
3469 5332 9.628500 GATCCCCTGTTAAGTTAACTGAATTAT 57.372 33.333 25.75 16.16 39.18 1.28
3470 5333 9.990868 ATCCCCTGTTAAGTTAACTGAATTATT 57.009 29.630 25.75 9.25 39.18 1.40
3471 5334 9.457436 TCCCCTGTTAAGTTAACTGAATTATTC 57.543 33.333 25.75 0.00 39.18 1.75
3472 5335 8.683615 CCCCTGTTAAGTTAACTGAATTATTCC 58.316 37.037 25.75 0.00 39.18 3.01
3473 5336 9.462606 CCCTGTTAAGTTAACTGAATTATTCCT 57.537 33.333 25.75 0.00 39.18 3.36
3485 5348 8.422577 ACTGAATTATTCCTAAAACAAAGCCT 57.577 30.769 2.22 0.00 0.00 4.58
3486 5349 8.523658 ACTGAATTATTCCTAAAACAAAGCCTC 58.476 33.333 2.22 0.00 0.00 4.70
3487 5350 8.650143 TGAATTATTCCTAAAACAAAGCCTCT 57.350 30.769 2.22 0.00 0.00 3.69
3488 5351 8.522830 TGAATTATTCCTAAAACAAAGCCTCTG 58.477 33.333 2.22 0.00 0.00 3.35
3489 5352 8.650143 AATTATTCCTAAAACAAAGCCTCTGA 57.350 30.769 0.00 0.00 0.00 3.27
3490 5353 8.650143 ATTATTCCTAAAACAAAGCCTCTGAA 57.350 30.769 0.00 0.00 0.00 3.02
3491 5354 6.581171 ATTCCTAAAACAAAGCCTCTGAAG 57.419 37.500 0.00 0.00 0.00 3.02
3492 5355 5.048846 TCCTAAAACAAAGCCTCTGAAGT 57.951 39.130 0.00 0.00 0.00 3.01
3493 5356 6.182507 TCCTAAAACAAAGCCTCTGAAGTA 57.817 37.500 0.00 0.00 0.00 2.24
3494 5357 6.597562 TCCTAAAACAAAGCCTCTGAAGTAA 58.402 36.000 0.00 0.00 0.00 2.24
3495 5358 6.485648 TCCTAAAACAAAGCCTCTGAAGTAAC 59.514 38.462 0.00 0.00 0.00 2.50
3496 5359 5.515797 AAAACAAAGCCTCTGAAGTAACC 57.484 39.130 0.00 0.00 0.00 2.85
3497 5360 3.141767 ACAAAGCCTCTGAAGTAACCC 57.858 47.619 0.00 0.00 0.00 4.11
3498 5361 2.711547 ACAAAGCCTCTGAAGTAACCCT 59.288 45.455 0.00 0.00 0.00 4.34
3499 5362 3.077359 CAAAGCCTCTGAAGTAACCCTG 58.923 50.000 0.00 0.00 0.00 4.45
3594 5457 9.699410 TCCCTCATAAATCAATGTTGACTAAAT 57.301 29.630 0.00 0.00 40.49 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 6.654122 GTCAAGTCTGAGATTTTGACAGAAC 58.346 40.000 25.01 8.99 45.32 3.01
363 392 6.014242 ACAGGATCTGAACATCAACTTGACTA 60.014 38.462 1.59 0.00 35.18 2.59
1804 2512 1.535204 ATTGGCTTGAAACTGGGCCG 61.535 55.000 0.00 0.00 46.72 6.13
2500 3429 5.416013 GCAGCTTATAGTTGTTTCCTCCTTT 59.584 40.000 0.00 0.00 0.00 3.11
2563 3492 5.493809 ACTGCAGTATACACCGGTTATTTT 58.506 37.500 20.16 0.00 0.00 1.82
3153 5016 5.856156 ACATTTGGTCTGATTGAAATGCAA 58.144 33.333 14.09 0.00 38.72 4.08
3251 5114 9.283768 TGTGACATGTACTCACTGAATTTTAAT 57.716 29.630 14.96 0.00 39.11 1.40
3285 5148 9.420118 TGTAATTGTAATTTTGATATGGCTCCT 57.580 29.630 0.00 0.00 0.00 3.69
3309 5172 9.515226 TTTCTGGAGCATAGTAAAATTTAGTGT 57.485 29.630 3.49 0.00 0.00 3.55
3317 5180 9.733556 TGTTCTTATTTCTGGAGCATAGTAAAA 57.266 29.630 0.00 0.00 0.00 1.52
3318 5181 9.733556 TTGTTCTTATTTCTGGAGCATAGTAAA 57.266 29.630 0.00 0.00 0.00 2.01
3319 5182 9.383519 CTTGTTCTTATTTCTGGAGCATAGTAA 57.616 33.333 0.00 0.00 0.00 2.24
3320 5183 7.987458 CCTTGTTCTTATTTCTGGAGCATAGTA 59.013 37.037 0.00 0.00 0.00 1.82
3321 5184 6.825721 CCTTGTTCTTATTTCTGGAGCATAGT 59.174 38.462 0.00 0.00 0.00 2.12
3322 5185 6.261826 CCCTTGTTCTTATTTCTGGAGCATAG 59.738 42.308 0.00 0.00 0.00 2.23
3323 5186 6.069673 TCCCTTGTTCTTATTTCTGGAGCATA 60.070 38.462 0.00 0.00 0.00 3.14
3324 5187 4.952335 CCCTTGTTCTTATTTCTGGAGCAT 59.048 41.667 0.00 0.00 0.00 3.79
3325 5188 4.042809 TCCCTTGTTCTTATTTCTGGAGCA 59.957 41.667 0.00 0.00 0.00 4.26
3326 5189 4.589908 TCCCTTGTTCTTATTTCTGGAGC 58.410 43.478 0.00 0.00 0.00 4.70
3327 5190 7.394359 TGAATTCCCTTGTTCTTATTTCTGGAG 59.606 37.037 2.27 0.00 0.00 3.86
3328 5191 7.237982 TGAATTCCCTTGTTCTTATTTCTGGA 58.762 34.615 2.27 0.00 0.00 3.86
3329 5192 7.466746 TGAATTCCCTTGTTCTTATTTCTGG 57.533 36.000 2.27 0.00 0.00 3.86
3330 5193 9.933723 AATTGAATTCCCTTGTTCTTATTTCTG 57.066 29.630 2.27 0.00 0.00 3.02
3336 5199 9.541143 GTTTGAAATTGAATTCCCTTGTTCTTA 57.459 29.630 2.27 0.00 0.00 2.10
3337 5200 8.267183 AGTTTGAAATTGAATTCCCTTGTTCTT 58.733 29.630 2.27 0.00 0.00 2.52
3338 5201 7.712205 CAGTTTGAAATTGAATTCCCTTGTTCT 59.288 33.333 2.27 0.00 0.00 3.01
3339 5202 7.710475 TCAGTTTGAAATTGAATTCCCTTGTTC 59.290 33.333 2.27 0.95 0.00 3.18
3340 5203 7.563906 TCAGTTTGAAATTGAATTCCCTTGTT 58.436 30.769 2.27 0.00 0.00 2.83
3341 5204 7.123355 TCAGTTTGAAATTGAATTCCCTTGT 57.877 32.000 2.27 0.00 0.00 3.16
3342 5205 9.362539 CTATCAGTTTGAAATTGAATTCCCTTG 57.637 33.333 7.20 0.00 0.00 3.61
3343 5206 9.312904 TCTATCAGTTTGAAATTGAATTCCCTT 57.687 29.630 7.20 0.00 0.00 3.95
3344 5207 8.743714 GTCTATCAGTTTGAAATTGAATTCCCT 58.256 33.333 7.20 0.00 0.00 4.20
3345 5208 8.743714 AGTCTATCAGTTTGAAATTGAATTCCC 58.256 33.333 7.20 0.00 0.00 3.97
3346 5209 9.565213 CAGTCTATCAGTTTGAAATTGAATTCC 57.435 33.333 7.20 0.00 0.00 3.01
3347 5210 9.070149 GCAGTCTATCAGTTTGAAATTGAATTC 57.930 33.333 7.20 0.00 0.00 2.17
3348 5211 8.579006 TGCAGTCTATCAGTTTGAAATTGAATT 58.421 29.630 7.20 0.00 0.00 2.17
3349 5212 8.114331 TGCAGTCTATCAGTTTGAAATTGAAT 57.886 30.769 7.20 0.21 0.00 2.57
3350 5213 7.445096 TCTGCAGTCTATCAGTTTGAAATTGAA 59.555 33.333 14.67 0.00 0.00 2.69
3351 5214 6.936335 TCTGCAGTCTATCAGTTTGAAATTGA 59.064 34.615 14.67 5.58 0.00 2.57
3352 5215 7.137490 TCTGCAGTCTATCAGTTTGAAATTG 57.863 36.000 14.67 0.00 0.00 2.32
3353 5216 7.750229 TTCTGCAGTCTATCAGTTTGAAATT 57.250 32.000 14.67 0.00 0.00 1.82
3354 5217 7.750229 TTTCTGCAGTCTATCAGTTTGAAAT 57.250 32.000 14.67 0.00 0.00 2.17
3355 5218 7.283127 AGTTTTCTGCAGTCTATCAGTTTGAAA 59.717 33.333 14.67 0.00 0.00 2.69
3356 5219 6.767902 AGTTTTCTGCAGTCTATCAGTTTGAA 59.232 34.615 14.67 0.00 0.00 2.69
3357 5220 6.203530 CAGTTTTCTGCAGTCTATCAGTTTGA 59.796 38.462 14.67 0.00 41.24 2.69
3358 5221 6.369005 CAGTTTTCTGCAGTCTATCAGTTTG 58.631 40.000 14.67 0.00 41.24 2.93
3359 5222 6.551385 CAGTTTTCTGCAGTCTATCAGTTT 57.449 37.500 14.67 0.00 41.24 2.66
3374 5237 2.683211 AGGGATTGTGGCAGTTTTCT 57.317 45.000 0.00 0.00 0.00 2.52
3375 5238 4.280929 AGTTAAGGGATTGTGGCAGTTTTC 59.719 41.667 0.00 0.00 0.00 2.29
3376 5239 4.223144 AGTTAAGGGATTGTGGCAGTTTT 58.777 39.130 0.00 0.00 0.00 2.43
3377 5240 3.844640 AGTTAAGGGATTGTGGCAGTTT 58.155 40.909 0.00 0.00 0.00 2.66
3378 5241 3.525800 AGTTAAGGGATTGTGGCAGTT 57.474 42.857 0.00 0.00 0.00 3.16
3379 5242 4.288626 TCTTAGTTAAGGGATTGTGGCAGT 59.711 41.667 0.00 0.00 34.14 4.40
3380 5243 4.843728 TCTTAGTTAAGGGATTGTGGCAG 58.156 43.478 0.00 0.00 34.14 4.85
3381 5244 4.288626 ACTCTTAGTTAAGGGATTGTGGCA 59.711 41.667 5.80 0.00 37.24 4.92
3382 5245 4.844884 ACTCTTAGTTAAGGGATTGTGGC 58.155 43.478 5.80 0.00 37.24 5.01
3383 5246 6.472887 TCAACTCTTAGTTAAGGGATTGTGG 58.527 40.000 5.80 0.00 36.03 4.17
3384 5247 9.667107 TTATCAACTCTTAGTTAAGGGATTGTG 57.333 33.333 5.80 0.00 36.03 3.33
3395 5258 8.793592 GGGACATGTTTTTATCAACTCTTAGTT 58.206 33.333 0.00 0.00 39.39 2.24
3396 5259 8.164070 AGGGACATGTTTTTATCAACTCTTAGT 58.836 33.333 0.00 0.00 0.00 2.24
3397 5260 8.567285 AGGGACATGTTTTTATCAACTCTTAG 57.433 34.615 0.00 0.00 0.00 2.18
3399 5262 8.934023 TTAGGGACATGTTTTTATCAACTCTT 57.066 30.769 0.00 0.00 0.00 2.85
3400 5263 8.934023 TTTAGGGACATGTTTTTATCAACTCT 57.066 30.769 0.00 0.00 0.00 3.24
3401 5264 9.406828 GTTTTAGGGACATGTTTTTATCAACTC 57.593 33.333 0.00 0.00 0.00 3.01
3402 5265 9.143155 AGTTTTAGGGACATGTTTTTATCAACT 57.857 29.630 0.00 1.36 0.00 3.16
3403 5266 9.758651 AAGTTTTAGGGACATGTTTTTATCAAC 57.241 29.630 0.00 0.00 0.00 3.18
3409 5272 9.981114 CTGAATAAGTTTTAGGGACATGTTTTT 57.019 29.630 0.00 0.00 0.00 1.94
3410 5273 9.143155 ACTGAATAAGTTTTAGGGACATGTTTT 57.857 29.630 0.00 0.00 34.57 2.43
3411 5274 8.706322 ACTGAATAAGTTTTAGGGACATGTTT 57.294 30.769 0.00 0.00 34.57 2.83
3412 5275 7.942341 TGACTGAATAAGTTTTAGGGACATGTT 59.058 33.333 0.00 0.00 40.07 2.71
3413 5276 7.458397 TGACTGAATAAGTTTTAGGGACATGT 58.542 34.615 0.00 0.00 40.07 3.21
3414 5277 7.607991 ACTGACTGAATAAGTTTTAGGGACATG 59.392 37.037 0.00 0.00 40.07 3.21
3415 5278 7.690256 ACTGACTGAATAAGTTTTAGGGACAT 58.310 34.615 0.00 0.00 40.07 3.06
3416 5279 7.074653 ACTGACTGAATAAGTTTTAGGGACA 57.925 36.000 0.00 0.00 40.07 4.02
3417 5280 7.981102 AACTGACTGAATAAGTTTTAGGGAC 57.019 36.000 0.00 0.00 40.07 4.46
3418 5281 9.096823 TCTAACTGACTGAATAAGTTTTAGGGA 57.903 33.333 0.00 0.00 40.07 4.20
3419 5282 9.892130 ATCTAACTGACTGAATAAGTTTTAGGG 57.108 33.333 0.00 0.00 40.07 3.53
3422 5285 9.886132 GGGATCTAACTGACTGAATAAGTTTTA 57.114 33.333 0.00 0.00 40.07 1.52
3423 5286 7.829706 GGGGATCTAACTGACTGAATAAGTTTT 59.170 37.037 0.00 0.00 40.07 2.43
3424 5287 7.182930 AGGGGATCTAACTGACTGAATAAGTTT 59.817 37.037 0.00 0.00 40.07 2.66
3425 5288 6.674419 AGGGGATCTAACTGACTGAATAAGTT 59.326 38.462 0.00 0.00 40.07 2.66
3426 5289 6.098982 CAGGGGATCTAACTGACTGAATAAGT 59.901 42.308 6.12 0.00 43.85 2.24
3427 5290 6.098982 ACAGGGGATCTAACTGACTGAATAAG 59.901 42.308 15.36 0.00 36.17 1.73
3428 5291 5.964477 ACAGGGGATCTAACTGACTGAATAA 59.036 40.000 15.36 0.00 36.17 1.40
3429 5292 5.529289 ACAGGGGATCTAACTGACTGAATA 58.471 41.667 15.36 0.00 36.17 1.75
3430 5293 4.366267 ACAGGGGATCTAACTGACTGAAT 58.634 43.478 15.36 0.00 36.17 2.57
3431 5294 3.791320 ACAGGGGATCTAACTGACTGAA 58.209 45.455 15.36 0.00 36.17 3.02
3432 5295 3.474798 ACAGGGGATCTAACTGACTGA 57.525 47.619 15.36 0.00 36.17 3.41
3433 5296 5.187967 ACTTAACAGGGGATCTAACTGACTG 59.812 44.000 15.36 0.00 36.17 3.51
3434 5297 5.342866 ACTTAACAGGGGATCTAACTGACT 58.657 41.667 15.36 7.29 36.17 3.41
3435 5298 5.678955 ACTTAACAGGGGATCTAACTGAC 57.321 43.478 15.36 0.00 36.17 3.51
3436 5299 7.456902 AGTTAACTTAACAGGGGATCTAACTGA 59.543 37.037 13.08 0.00 41.07 3.41
3437 5300 7.549488 CAGTTAACTTAACAGGGGATCTAACTG 59.451 40.741 5.07 9.31 41.07 3.16
3438 5301 7.456902 TCAGTTAACTTAACAGGGGATCTAACT 59.543 37.037 5.07 0.00 41.07 2.24
3439 5302 7.618137 TCAGTTAACTTAACAGGGGATCTAAC 58.382 38.462 5.07 0.00 41.07 2.34
3440 5303 7.801893 TCAGTTAACTTAACAGGGGATCTAA 57.198 36.000 5.07 0.00 41.07 2.10
3441 5304 7.801893 TTCAGTTAACTTAACAGGGGATCTA 57.198 36.000 5.07 0.00 41.07 1.98
3442 5305 6.697641 TTCAGTTAACTTAACAGGGGATCT 57.302 37.500 5.07 0.00 41.07 2.75
3443 5306 7.939784 AATTCAGTTAACTTAACAGGGGATC 57.060 36.000 5.07 0.00 41.07 3.36
3444 5307 9.990868 AATAATTCAGTTAACTTAACAGGGGAT 57.009 29.630 5.07 0.00 41.07 3.85
3445 5308 9.457436 GAATAATTCAGTTAACTTAACAGGGGA 57.543 33.333 5.07 0.00 41.07 4.81
3446 5309 8.683615 GGAATAATTCAGTTAACTTAACAGGGG 58.316 37.037 5.07 0.00 41.07 4.79
3447 5310 9.462606 AGGAATAATTCAGTTAACTTAACAGGG 57.537 33.333 5.07 0.00 41.07 4.45
3459 5322 8.870116 AGGCTTTGTTTTAGGAATAATTCAGTT 58.130 29.630 0.00 0.00 0.00 3.16
3460 5323 8.422577 AGGCTTTGTTTTAGGAATAATTCAGT 57.577 30.769 0.00 0.00 0.00 3.41
3461 5324 8.743714 AGAGGCTTTGTTTTAGGAATAATTCAG 58.256 33.333 0.00 0.00 0.00 3.02
3462 5325 8.522830 CAGAGGCTTTGTTTTAGGAATAATTCA 58.477 33.333 0.00 0.00 0.00 2.57
3463 5326 8.739972 TCAGAGGCTTTGTTTTAGGAATAATTC 58.260 33.333 4.83 0.00 0.00 2.17
3464 5327 8.650143 TCAGAGGCTTTGTTTTAGGAATAATT 57.350 30.769 4.83 0.00 0.00 1.40
3465 5328 8.650143 TTCAGAGGCTTTGTTTTAGGAATAAT 57.350 30.769 4.83 0.00 0.00 1.28
3466 5329 7.724061 ACTTCAGAGGCTTTGTTTTAGGAATAA 59.276 33.333 4.83 0.00 0.00 1.40
3467 5330 7.231467 ACTTCAGAGGCTTTGTTTTAGGAATA 58.769 34.615 4.83 0.00 0.00 1.75
3468 5331 6.071320 ACTTCAGAGGCTTTGTTTTAGGAAT 58.929 36.000 4.83 0.00 0.00 3.01
3469 5332 5.445964 ACTTCAGAGGCTTTGTTTTAGGAA 58.554 37.500 4.83 0.00 0.00 3.36
3470 5333 5.048846 ACTTCAGAGGCTTTGTTTTAGGA 57.951 39.130 4.83 0.00 0.00 2.94
3471 5334 6.294010 GGTTACTTCAGAGGCTTTGTTTTAGG 60.294 42.308 4.83 0.00 0.00 2.69
3472 5335 6.294010 GGGTTACTTCAGAGGCTTTGTTTTAG 60.294 42.308 4.83 2.19 0.00 1.85
3473 5336 5.533528 GGGTTACTTCAGAGGCTTTGTTTTA 59.466 40.000 4.83 0.00 0.00 1.52
3474 5337 4.341235 GGGTTACTTCAGAGGCTTTGTTTT 59.659 41.667 4.83 0.00 0.00 2.43
3475 5338 3.889538 GGGTTACTTCAGAGGCTTTGTTT 59.110 43.478 4.83 0.00 0.00 2.83
3476 5339 3.138468 AGGGTTACTTCAGAGGCTTTGTT 59.862 43.478 4.83 0.00 0.00 2.83
3477 5340 2.711547 AGGGTTACTTCAGAGGCTTTGT 59.288 45.455 4.83 0.00 0.00 2.83
3478 5341 3.077359 CAGGGTTACTTCAGAGGCTTTG 58.923 50.000 0.00 0.00 0.00 2.77
3479 5342 2.553247 GCAGGGTTACTTCAGAGGCTTT 60.553 50.000 0.00 0.00 0.00 3.51
3480 5343 1.003696 GCAGGGTTACTTCAGAGGCTT 59.996 52.381 0.00 0.00 0.00 4.35
3481 5344 0.615850 GCAGGGTTACTTCAGAGGCT 59.384 55.000 0.00 0.00 0.00 4.58
3482 5345 0.615850 AGCAGGGTTACTTCAGAGGC 59.384 55.000 0.00 0.00 0.00 4.70
3483 5346 3.515901 AGTAAGCAGGGTTACTTCAGAGG 59.484 47.826 15.92 0.00 39.73 3.69
3484 5347 4.810191 AGTAAGCAGGGTTACTTCAGAG 57.190 45.455 15.92 0.00 39.73 3.35
3485 5348 5.046807 GGTTAGTAAGCAGGGTTACTTCAGA 60.047 44.000 23.83 7.99 39.73 3.27
3486 5349 5.176592 GGTTAGTAAGCAGGGTTACTTCAG 58.823 45.833 23.83 0.00 39.73 3.02
3487 5350 4.019950 GGGTTAGTAAGCAGGGTTACTTCA 60.020 45.833 23.83 12.05 39.73 3.02
3488 5351 4.224594 AGGGTTAGTAAGCAGGGTTACTTC 59.775 45.833 23.83 17.66 39.73 3.01
3489 5352 4.173594 AGGGTTAGTAAGCAGGGTTACTT 58.826 43.478 23.83 11.77 39.73 2.24
3490 5353 3.773667 GAGGGTTAGTAAGCAGGGTTACT 59.226 47.826 22.69 22.69 43.98 2.24
3491 5354 3.773667 AGAGGGTTAGTAAGCAGGGTTAC 59.226 47.826 13.76 12.21 33.72 2.50
3492 5355 4.028825 GAGAGGGTTAGTAAGCAGGGTTA 58.971 47.826 13.76 0.00 0.00 2.85
3493 5356 2.838813 GAGAGGGTTAGTAAGCAGGGTT 59.161 50.000 13.76 0.00 0.00 4.11
3494 5357 2.044630 AGAGAGGGTTAGTAAGCAGGGT 59.955 50.000 13.76 0.00 0.00 4.34
3495 5358 2.696187 GAGAGAGGGTTAGTAAGCAGGG 59.304 54.545 13.76 0.00 0.00 4.45
3496 5359 3.637769 AGAGAGAGGGTTAGTAAGCAGG 58.362 50.000 13.76 0.00 0.00 4.85
3497 5360 4.953579 AGAAGAGAGAGGGTTAGTAAGCAG 59.046 45.833 13.76 0.00 0.00 4.24
3498 5361 4.936802 AGAAGAGAGAGGGTTAGTAAGCA 58.063 43.478 13.76 0.00 0.00 3.91
3499 5362 5.419471 TGAAGAAGAGAGAGGGTTAGTAAGC 59.581 44.000 3.39 3.39 0.00 3.09
3602 5465 5.003804 TCAAGTGATTTTTAGGGAGAGCAC 58.996 41.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.