Multiple sequence alignment - TraesCS6A01G045500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G045500 chr6A 100.000 2264 0 0 1 2264 23448640 23446377 0.000000e+00 4181.0
1 TraesCS6A01G045500 chr5B 92.308 1690 97 15 122 1800 384356036 384354369 0.000000e+00 2370.0
2 TraesCS6A01G045500 chr5B 91.701 241 16 1 1564 1800 356266326 356266566 4.660000e-87 331.0
3 TraesCS6A01G045500 chr5B 93.600 125 8 0 1 125 384366504 384366380 1.070000e-43 187.0
4 TraesCS6A01G045500 chr5B 100.000 29 0 0 1796 1824 356266581 356266609 1.000000e-03 54.7
5 TraesCS6A01G045500 chr5B 100.000 29 0 0 1796 1824 384354354 384354326 1.000000e-03 54.7
6 TraesCS6A01G045500 chr4B 96.131 1318 49 2 122 1439 510388528 510389843 0.000000e+00 2150.0
7 TraesCS6A01G045500 chr4B 92.114 317 19 3 1488 1800 510389839 510390153 2.060000e-120 442.0
8 TraesCS6A01G045500 chr4B 89.266 177 19 0 1624 1800 454390849 454391025 2.930000e-54 222.0
9 TraesCS6A01G045500 chr4B 94.400 125 7 0 1 125 510387300 510387424 2.290000e-45 193.0
10 TraesCS6A01G045500 chr4B 100.000 29 0 0 1796 1824 510390168 510390196 1.000000e-03 54.7
11 TraesCS6A01G045500 chr2D 92.025 1304 82 13 122 1403 52067330 52068633 0.000000e+00 1812.0
12 TraesCS6A01G045500 chr2D 92.562 121 9 0 1 121 36411789 36411669 8.310000e-40 174.0
13 TraesCS6A01G045500 chr7B 91.776 1301 87 13 122 1403 664218086 664219385 0.000000e+00 1792.0
14 TraesCS6A01G045500 chr7B 88.787 437 28 5 1847 2264 55836503 55836937 1.200000e-142 516.0
15 TraesCS6A01G045500 chr7B 92.767 318 15 5 1488 1800 72302113 72301799 9.530000e-124 453.0
16 TraesCS6A01G045500 chr7B 96.800 125 4 0 1 125 72303726 72303602 2.280000e-50 209.0
17 TraesCS6A01G045500 chr7B 100.000 29 0 0 1796 1824 72301784 72301756 1.000000e-03 54.7
18 TraesCS6A01G045500 chr5A 90.992 1310 90 14 122 1403 622727012 622725703 0.000000e+00 1740.0
19 TraesCS6A01G045500 chr5A 91.531 1228 99 5 122 1345 596089170 596087944 0.000000e+00 1687.0
20 TraesCS6A01G045500 chr5A 89.552 268 23 3 1538 1800 704693631 704693898 3.600000e-88 335.0
21 TraesCS6A01G045500 chr5A 91.736 121 10 0 1 121 596090359 596090239 3.870000e-38 169.0
22 TraesCS6A01G045500 chr5A 100.000 29 0 0 1796 1824 704693913 704693941 1.000000e-03 54.7
23 TraesCS6A01G045500 chr6B 92.506 1201 80 6 122 1315 129396375 129397572 0.000000e+00 1711.0
24 TraesCS6A01G045500 chr6B 89.791 431 31 3 1847 2264 14310809 14310379 7.110000e-150 540.0
25 TraesCS6A01G045500 chr4A 90.788 1281 112 5 122 1399 91227409 91226132 0.000000e+00 1707.0
26 TraesCS6A01G045500 chr4A 92.562 121 9 0 1 121 91228598 91228478 8.310000e-40 174.0
27 TraesCS6A01G045500 chr4A 93.421 76 5 0 1331 1406 255810542 255810467 1.840000e-21 113.0
28 TraesCS6A01G045500 chr3D 91.941 1216 96 2 122 1336 537328064 537326850 0.000000e+00 1701.0
29 TraesCS6A01G045500 chr3D 89.744 429 31 7 1849 2264 454526262 454525834 9.200000e-149 536.0
30 TraesCS6A01G045500 chr3D 85.990 207 24 5 1595 1799 592848665 592848462 1.360000e-52 217.0
31 TraesCS6A01G045500 chr3B 91.647 431 23 4 1847 2264 141738548 141738978 3.240000e-163 584.0
32 TraesCS6A01G045500 chr3B 91.395 430 25 3 1847 2264 662804257 662804686 1.510000e-161 579.0
33 TraesCS6A01G045500 chr3B 91.395 430 25 3 1847 2264 662805470 662805899 1.510000e-161 579.0
34 TraesCS6A01G045500 chr3B 91.375 429 25 3 1848 2264 482004301 482003873 5.420000e-161 577.0
35 TraesCS6A01G045500 chr3B 90.930 430 27 5 1847 2264 685057394 685057823 3.260000e-158 568.0
36 TraesCS6A01G045500 chr3B 90.995 422 34 4 1847 2264 740513555 740513134 1.170000e-157 566.0
37 TraesCS6A01G045500 chr3B 92.105 76 6 0 1331 1406 778600178 778600253 8.550000e-20 108.0
38 TraesCS6A01G045500 chr3B 92.105 76 6 0 1331 1406 778633700 778633775 8.550000e-20 108.0
39 TraesCS6A01G045500 chr1A 88.860 386 31 4 1419 1800 163378658 163378281 4.400000e-127 464.0
40 TraesCS6A01G045500 chr1A 100.000 29 0 0 1796 1824 163378266 163378238 1.000000e-03 54.7
41 TraesCS6A01G045500 chr6D 87.805 328 33 5 1847 2171 431465445 431465122 5.900000e-101 377.0
42 TraesCS6A01G045500 chr6D 92.562 121 9 0 1 121 58206003 58205883 8.310000e-40 174.0
43 TraesCS6A01G045500 chr6D 93.220 118 7 1 1 117 453656009 453656126 2.990000e-39 172.0
44 TraesCS6A01G045500 chr5D 86.634 202 23 4 1600 1799 388600653 388600454 1.050000e-53 220.0
45 TraesCS6A01G045500 chr2A 93.162 117 8 0 1 117 615518507 615518391 2.990000e-39 172.0
46 TraesCS6A01G045500 chr7A 93.421 76 5 0 1331 1406 50903649 50903574 1.840000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G045500 chr6A 23446377 23448640 2263 True 4181.000 4181 100.000000 1 2264 1 chr6A.!!$R1 2263
1 TraesCS6A01G045500 chr5B 384354326 384356036 1710 True 1212.350 2370 96.154000 122 1824 2 chr5B.!!$R2 1702
2 TraesCS6A01G045500 chr4B 510387300 510390196 2896 False 709.925 2150 95.661250 1 1824 4 chr4B.!!$F2 1823
3 TraesCS6A01G045500 chr2D 52067330 52068633 1303 False 1812.000 1812 92.025000 122 1403 1 chr2D.!!$F1 1281
4 TraesCS6A01G045500 chr7B 664218086 664219385 1299 False 1792.000 1792 91.776000 122 1403 1 chr7B.!!$F2 1281
5 TraesCS6A01G045500 chr7B 72301756 72303726 1970 True 238.900 453 96.522333 1 1824 3 chr7B.!!$R1 1823
6 TraesCS6A01G045500 chr5A 622725703 622727012 1309 True 1740.000 1740 90.992000 122 1403 1 chr5A.!!$R1 1281
7 TraesCS6A01G045500 chr5A 596087944 596090359 2415 True 928.000 1687 91.633500 1 1345 2 chr5A.!!$R2 1344
8 TraesCS6A01G045500 chr6B 129396375 129397572 1197 False 1711.000 1711 92.506000 122 1315 1 chr6B.!!$F1 1193
9 TraesCS6A01G045500 chr4A 91226132 91228598 2466 True 940.500 1707 91.675000 1 1399 2 chr4A.!!$R2 1398
10 TraesCS6A01G045500 chr3D 537326850 537328064 1214 True 1701.000 1701 91.941000 122 1336 1 chr3D.!!$R2 1214
11 TraesCS6A01G045500 chr3B 662804257 662805899 1642 False 579.000 579 91.395000 1847 2264 2 chr3B.!!$F5 417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 2398 0.53109 CACGTCCCCGACTTTCAACA 60.531 55.0 0.0 0.0 37.88 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 5094 0.975556 TTATCTCAGCTGCGACCCCA 60.976 55.0 8.9 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.936498 GGATGGGACTATGTGAACAACG 59.064 50.000 0.00 0.00 0.00 4.10
111 112 4.163078 TGGAAAAAGGCCAAAATTGTGAGA 59.837 37.500 5.01 0.00 31.13 3.27
113 114 5.764686 GGAAAAAGGCCAAAATTGTGAGATT 59.235 36.000 5.01 0.00 0.00 2.40
142 1315 4.471904 AATGGTTGCGAGAGACTATTGA 57.528 40.909 0.00 0.00 0.00 2.57
151 1324 3.119602 CGAGAGACTATTGAAACACCCGA 60.120 47.826 0.00 0.00 0.00 5.14
200 1373 6.864685 TGAATGCAAATGTGTTCTTTGATCTC 59.135 34.615 0.00 0.00 35.99 2.75
277 1450 7.434897 CACTTATGAGTCTCTTGCTATGTTCTC 59.565 40.741 0.65 0.00 32.54 2.87
290 1463 1.052124 TGTTCTCGTGGACCTTGGGT 61.052 55.000 0.00 0.00 39.44 4.51
815 2329 3.019564 AGTATTACCTTGTAGACGCCGT 58.980 45.455 0.00 0.00 0.00 5.68
884 2398 0.531090 CACGTCCCCGACTTTCAACA 60.531 55.000 0.00 0.00 37.88 3.33
951 2465 0.947244 CCTCCAAGCGCAATACCATC 59.053 55.000 11.47 0.00 0.00 3.51
978 2492 4.104102 AGAACCTTTGGTGTGTGGAAGATA 59.896 41.667 0.00 0.00 35.34 1.98
1112 2626 2.135933 CCACTTTCTTCGGTGTGAGAC 58.864 52.381 0.00 0.00 32.72 3.36
1317 2842 7.863666 ACACCATTTTGATTTGCAAACTTATG 58.136 30.769 15.41 12.89 45.64 1.90
1319 2844 8.011106 CACCATTTTGATTTGCAAACTTATGTC 58.989 33.333 15.41 7.64 45.64 3.06
1320 2845 7.933033 ACCATTTTGATTTGCAAACTTATGTCT 59.067 29.630 15.41 0.00 45.64 3.41
1411 2954 6.592870 ACTAGGAATATTAGTGGCAAGTTCC 58.407 40.000 0.00 0.00 35.13 3.62
1421 2964 8.588290 ATTAGTGGCAAGTTCCAAAATACATA 57.412 30.769 0.00 0.00 37.96 2.29
1433 3029 1.663695 AATACATACCGGCTGTGTGC 58.336 50.000 18.02 0.00 39.51 4.57
1438 3034 0.673644 ATACCGGCTGTGTGCAGTTC 60.674 55.000 0.00 0.00 44.32 3.01
1439 3035 1.754380 TACCGGCTGTGTGCAGTTCT 61.754 55.000 0.00 0.00 44.32 3.01
1440 3036 2.320587 CCGGCTGTGTGCAGTTCTC 61.321 63.158 0.00 0.00 44.32 2.87
1441 3037 1.301244 CGGCTGTGTGCAGTTCTCT 60.301 57.895 0.00 0.00 44.32 3.10
1442 3038 1.563435 CGGCTGTGTGCAGTTCTCTG 61.563 60.000 0.00 0.00 44.32 3.35
1443 3039 0.533755 GGCTGTGTGCAGTTCTCTGT 60.534 55.000 0.00 0.00 44.32 3.41
1444 3040 1.270305 GGCTGTGTGCAGTTCTCTGTA 60.270 52.381 0.00 0.00 44.32 2.74
1451 3047 2.598565 TGCAGTTCTCTGTACACCTCT 58.401 47.619 0.00 0.00 43.05 3.69
1452 3048 2.965831 TGCAGTTCTCTGTACACCTCTT 59.034 45.455 0.00 0.00 43.05 2.85
1453 3049 4.149598 TGCAGTTCTCTGTACACCTCTTA 58.850 43.478 0.00 0.00 43.05 2.10
1454 3050 4.218635 TGCAGTTCTCTGTACACCTCTTAG 59.781 45.833 0.00 0.00 43.05 2.18
1455 3051 4.218852 GCAGTTCTCTGTACACCTCTTAGT 59.781 45.833 0.00 0.00 43.05 2.24
1456 3052 5.279056 GCAGTTCTCTGTACACCTCTTAGTT 60.279 44.000 0.00 0.00 43.05 2.24
1457 3053 6.072064 GCAGTTCTCTGTACACCTCTTAGTTA 60.072 42.308 0.00 0.00 43.05 2.24
1458 3054 7.523380 GCAGTTCTCTGTACACCTCTTAGTTAA 60.523 40.741 0.00 0.00 43.05 2.01
1459 3055 8.358148 CAGTTCTCTGTACACCTCTTAGTTAAA 58.642 37.037 0.00 0.00 36.97 1.52
1460 3056 8.921205 AGTTCTCTGTACACCTCTTAGTTAAAA 58.079 33.333 0.00 0.00 0.00 1.52
1461 3057 9.538508 GTTCTCTGTACACCTCTTAGTTAAAAA 57.461 33.333 0.00 0.00 0.00 1.94
1487 3083 8.951787 ATACGTTACAAAATAAGCCATCTACA 57.048 30.769 0.00 0.00 0.00 2.74
1488 3084 7.303634 ACGTTACAAAATAAGCCATCTACAG 57.696 36.000 0.00 0.00 0.00 2.74
1489 3085 6.877322 ACGTTACAAAATAAGCCATCTACAGT 59.123 34.615 0.00 0.00 0.00 3.55
1490 3086 7.389607 ACGTTACAAAATAAGCCATCTACAGTT 59.610 33.333 0.00 0.00 0.00 3.16
1513 3109 2.276732 AAATATATGGCGGCTGCAGT 57.723 45.000 21.31 9.57 45.35 4.40
1514 3110 3.417069 AAATATATGGCGGCTGCAGTA 57.583 42.857 21.31 11.64 45.35 2.74
1555 3152 3.818295 ACCTCTCTGTACACCTCTCTT 57.182 47.619 0.00 0.00 0.00 2.85
1570 3167 3.868077 CCTCTCTTTACTGGCAGAAATCG 59.132 47.826 23.66 10.47 0.00 3.34
1585 3182 4.667948 CAGAAATCGCACAAATTATCTCGC 59.332 41.667 0.00 0.00 0.00 5.03
1592 3189 4.342772 GCACAAATTATCTCGCGTGAAAT 58.657 39.130 15.50 12.46 0.00 2.17
1666 3273 1.681780 GCCTATGTGCAGTTTAGCCCA 60.682 52.381 0.00 0.00 0.00 5.36
1758 3365 2.060980 CCCAGGCGCTAGGAGAAGT 61.061 63.158 18.21 0.00 0.00 3.01
1770 3377 1.807573 GAGAAGTTGCCTCGCCTCG 60.808 63.158 0.00 0.00 0.00 4.63
1824 3450 4.093556 GGATACGAGAAGTTTTGCTGAAGG 59.906 45.833 0.00 0.00 0.00 3.46
1825 3451 2.222027 ACGAGAAGTTTTGCTGAAGGG 58.778 47.619 0.00 0.00 0.00 3.95
1826 3452 2.158813 ACGAGAAGTTTTGCTGAAGGGA 60.159 45.455 0.00 0.00 0.00 4.20
1827 3453 2.878406 CGAGAAGTTTTGCTGAAGGGAA 59.122 45.455 0.00 0.00 0.00 3.97
1828 3454 3.503748 CGAGAAGTTTTGCTGAAGGGAAT 59.496 43.478 0.00 0.00 0.00 3.01
1829 3455 4.378874 CGAGAAGTTTTGCTGAAGGGAATC 60.379 45.833 0.00 0.00 0.00 2.52
1830 3456 3.503748 AGAAGTTTTGCTGAAGGGAATCG 59.496 43.478 0.00 0.00 0.00 3.34
1831 3457 2.863809 AGTTTTGCTGAAGGGAATCGT 58.136 42.857 0.00 0.00 0.00 3.73
1832 3458 3.222603 AGTTTTGCTGAAGGGAATCGTT 58.777 40.909 0.00 0.00 0.00 3.85
1833 3459 3.636764 AGTTTTGCTGAAGGGAATCGTTT 59.363 39.130 0.00 0.00 0.00 3.60
1834 3460 3.641437 TTTGCTGAAGGGAATCGTTTG 57.359 42.857 0.00 0.00 0.00 2.93
1835 3461 1.533625 TGCTGAAGGGAATCGTTTGG 58.466 50.000 0.00 0.00 0.00 3.28
1836 3462 0.171231 GCTGAAGGGAATCGTTTGGC 59.829 55.000 0.00 0.00 0.00 4.52
1837 3463 1.533625 CTGAAGGGAATCGTTTGGCA 58.466 50.000 0.00 0.00 0.00 4.92
1838 3464 1.885887 CTGAAGGGAATCGTTTGGCAA 59.114 47.619 0.00 0.00 0.00 4.52
1839 3465 1.611491 TGAAGGGAATCGTTTGGCAAC 59.389 47.619 0.00 0.00 0.00 4.17
1892 3518 1.873863 CGACTCGCCTAGTGACACA 59.126 57.895 8.59 0.00 39.07 3.72
1893 3519 0.454620 CGACTCGCCTAGTGACACAC 60.455 60.000 8.59 0.00 39.07 3.82
1899 3525 1.737029 CGCCTAGTGACACACAGGATG 60.737 57.143 23.54 14.02 46.00 3.51
1947 4788 3.008923 CCTCCTGCCTTTTCTCTTCTTCT 59.991 47.826 0.00 0.00 0.00 2.85
1956 4797 3.833545 TTCTCTTCTTCTTCTCGGTCG 57.166 47.619 0.00 0.00 0.00 4.79
1980 4821 2.041891 TCTCTCTTCTCTCTCCCCGTTT 59.958 50.000 0.00 0.00 0.00 3.60
2004 4845 3.632080 TCAACCCATCGCCCACGT 61.632 61.111 0.00 0.00 41.18 4.49
2048 4889 1.811558 CGTCATGGGAATCAGCCGATT 60.812 52.381 0.00 0.00 44.75 3.34
2212 5063 4.569564 CCGGTGGTAGCAAAAATCTACTAC 59.430 45.833 0.00 7.76 43.44 2.73
2243 5094 2.277949 CGGCGTCATCGTCATCGT 60.278 61.111 0.00 0.00 42.21 3.73
2246 5097 2.230940 GCGTCATCGTCATCGTGGG 61.231 63.158 0.00 0.00 39.49 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.090129 CGGAACTTGAGTTTCTTGAACAAAA 58.910 36.000 0.00 0.00 40.84 2.44
64 65 1.662629 CTCATCATCTTGTGACACGGC 59.337 52.381 0.22 0.00 40.28 5.68
142 1315 1.682854 TGTACGTCTCTTCGGGTGTTT 59.317 47.619 0.00 0.00 34.94 2.83
151 1324 5.196341 TCTCAACATTGTGTACGTCTCTT 57.804 39.130 0.00 0.00 0.00 2.85
200 1373 1.580942 CGCCACCAACTTGTCATGG 59.419 57.895 0.00 0.00 42.60 3.66
277 1450 1.896660 CAACCACCCAAGGTCCACG 60.897 63.158 0.00 0.00 42.25 4.94
290 1463 4.163441 TCTCCTGTTTGATTCACAACCA 57.837 40.909 8.33 0.00 38.29 3.67
595 2104 4.943705 AGGTGAAATGCATATCAAAGTCGT 59.056 37.500 0.00 0.00 0.00 4.34
815 2329 7.487441 AGATAGCCATCCCTATTAGGATAGA 57.513 40.000 11.52 0.65 45.21 1.98
884 2398 1.065997 AGTAGTTGGGGGTGCACCTT 61.066 55.000 33.91 15.39 40.03 3.50
951 2465 1.867233 CACACACCAAAGGTTCTCTCG 59.133 52.381 0.00 0.00 31.02 4.04
1340 2882 8.395633 ACGAATAACCAGCTTTGTTATATGTTC 58.604 33.333 15.37 10.67 37.80 3.18
1341 2883 8.276252 ACGAATAACCAGCTTTGTTATATGTT 57.724 30.769 15.37 4.71 37.80 2.71
1399 2942 5.185056 GGTATGTATTTTGGAACTTGCCACT 59.815 40.000 0.00 0.00 37.75 4.00
1411 2954 3.730662 GCACACAGCCGGTATGTATTTTG 60.731 47.826 13.19 9.66 37.23 2.44
1461 3057 9.386010 TGTAGATGGCTTATTTTGTAACGTATT 57.614 29.630 0.00 0.00 0.00 1.89
1462 3058 8.951787 TGTAGATGGCTTATTTTGTAACGTAT 57.048 30.769 0.00 0.00 0.00 3.06
1463 3059 8.036575 ACTGTAGATGGCTTATTTTGTAACGTA 58.963 33.333 0.00 0.00 0.00 3.57
1464 3060 6.877322 ACTGTAGATGGCTTATTTTGTAACGT 59.123 34.615 0.00 0.00 0.00 3.99
1465 3061 7.303634 ACTGTAGATGGCTTATTTTGTAACG 57.696 36.000 0.00 0.00 0.00 3.18
1466 3062 8.726988 TGAACTGTAGATGGCTTATTTTGTAAC 58.273 33.333 0.00 0.00 0.00 2.50
1467 3063 8.856153 TGAACTGTAGATGGCTTATTTTGTAA 57.144 30.769 0.00 0.00 0.00 2.41
1468 3064 8.856153 TTGAACTGTAGATGGCTTATTTTGTA 57.144 30.769 0.00 0.00 0.00 2.41
1469 3065 7.759489 TTGAACTGTAGATGGCTTATTTTGT 57.241 32.000 0.00 0.00 0.00 2.83
1470 3066 9.474920 TTTTTGAACTGTAGATGGCTTATTTTG 57.525 29.630 0.00 0.00 0.00 2.44
1477 3073 9.071276 CCATATATTTTTGAACTGTAGATGGCT 57.929 33.333 0.00 0.00 30.31 4.75
1478 3074 7.809806 GCCATATATTTTTGAACTGTAGATGGC 59.190 37.037 11.92 11.92 46.40 4.40
1479 3075 8.017373 CGCCATATATTTTTGAACTGTAGATGG 58.983 37.037 0.00 0.00 37.26 3.51
1480 3076 8.017373 CCGCCATATATTTTTGAACTGTAGATG 58.983 37.037 0.00 0.00 0.00 2.90
1481 3077 7.308589 GCCGCCATATATTTTTGAACTGTAGAT 60.309 37.037 0.00 0.00 0.00 1.98
1482 3078 6.017440 GCCGCCATATATTTTTGAACTGTAGA 60.017 38.462 0.00 0.00 0.00 2.59
1483 3079 6.017109 AGCCGCCATATATTTTTGAACTGTAG 60.017 38.462 0.00 0.00 0.00 2.74
1484 3080 5.825679 AGCCGCCATATATTTTTGAACTGTA 59.174 36.000 0.00 0.00 0.00 2.74
1485 3081 4.644685 AGCCGCCATATATTTTTGAACTGT 59.355 37.500 0.00 0.00 0.00 3.55
1486 3082 4.977963 CAGCCGCCATATATTTTTGAACTG 59.022 41.667 0.00 0.00 0.00 3.16
1487 3083 4.499696 GCAGCCGCCATATATTTTTGAACT 60.500 41.667 0.00 0.00 0.00 3.01
1488 3084 3.735746 GCAGCCGCCATATATTTTTGAAC 59.264 43.478 0.00 0.00 0.00 3.18
1489 3085 3.382865 TGCAGCCGCCATATATTTTTGAA 59.617 39.130 0.00 0.00 37.32 2.69
1490 3086 2.954989 TGCAGCCGCCATATATTTTTGA 59.045 40.909 0.00 0.00 37.32 2.69
1513 3109 2.309162 AGAGGTGTACAGAGAGCTGGTA 59.691 50.000 0.00 0.00 46.60 3.25
1514 3110 1.076350 AGAGGTGTACAGAGAGCTGGT 59.924 52.381 0.00 0.00 46.60 4.00
1555 3152 2.177394 TGTGCGATTTCTGCCAGTAA 57.823 45.000 0.00 0.00 0.00 2.24
1570 3167 3.383546 TTCACGCGAGATAATTTGTGC 57.616 42.857 15.93 0.00 0.00 4.57
1585 3182 4.173256 GGGTGAATGGCTTTTATTTCACG 58.827 43.478 8.14 0.00 0.00 4.35
1592 3189 1.713647 TCCTGGGGTGAATGGCTTTTA 59.286 47.619 0.00 0.00 0.00 1.52
1650 3257 3.306919 CCATTTTGGGCTAAACTGCACAT 60.307 43.478 7.96 0.00 46.49 3.21
1733 3340 1.296715 CTAGCGCCTGGGTGAGTTT 59.703 57.895 2.29 0.00 0.00 2.66
1904 3530 4.988598 AAGACGCACGTGGGCAGG 62.989 66.667 30.09 2.02 0.00 4.85
1905 3531 3.414700 GAAGACGCACGTGGGCAG 61.415 66.667 30.09 9.83 0.00 4.85
1906 3532 3.858868 GAGAAGACGCACGTGGGCA 62.859 63.158 30.09 0.00 0.00 5.36
1912 4753 2.182030 GGAGGGAGAAGACGCACG 59.818 66.667 0.00 0.00 0.00 5.34
1947 4788 2.027929 AGAAGAGAGAGACGACCGAGAA 60.028 50.000 0.00 0.00 0.00 2.87
1956 4797 2.745152 CGGGGAGAGAGAAGAGAGAGAC 60.745 59.091 0.00 0.00 0.00 3.36
2022 4863 4.108299 ATTCCCATGACGGCGGCA 62.108 61.111 21.84 21.84 0.00 5.69
2029 4870 1.972872 AATCGGCTGATTCCCATGAC 58.027 50.000 15.26 0.00 40.90 3.06
2111 4962 2.980233 GCTGGTTGCAGCTTCGGT 60.980 61.111 0.00 0.00 44.31 4.69
2113 4964 2.338015 ATGGCTGGTTGCAGCTTCG 61.338 57.895 0.00 0.00 46.69 3.79
2114 4965 1.214589 CATGGCTGGTTGCAGCTTC 59.785 57.895 0.00 0.00 46.69 3.86
2115 4966 2.280552 CCATGGCTGGTTGCAGCTT 61.281 57.895 0.00 0.00 46.69 3.74
2133 4984 4.814294 CCGCGGGGTGTACTCTGC 62.814 72.222 20.10 5.62 0.00 4.26
2154 5005 1.068434 ACAACCGGTTCCAGCAAAATG 59.932 47.619 19.24 5.34 0.00 2.32
2212 5063 3.029735 GCCGTTTTGCTGCAACCG 61.030 61.111 15.72 18.70 0.00 4.44
2243 5094 0.975556 TTATCTCAGCTGCGACCCCA 60.976 55.000 8.90 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.