Multiple sequence alignment - TraesCS6A01G044900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G044900 chr6A 100.000 3951 0 0 1 3951 23384182 23388132 0.000000e+00 7297.0
1 TraesCS6A01G044900 chr6A 96.817 2199 53 13 1331 3524 140728292 140726106 0.000000e+00 3657.0
2 TraesCS6A01G044900 chr6A 96.585 615 14 2 1 615 140730250 140729643 0.000000e+00 1013.0
3 TraesCS6A01G044900 chr6A 97.717 438 8 2 819 1256 140728723 140728288 0.000000e+00 752.0
4 TraesCS6A01G044900 chr6A 91.476 481 33 7 3472 3951 140725951 140725478 0.000000e+00 654.0
5 TraesCS6A01G044900 chr6A 92.899 169 12 0 3477 3645 140726190 140726022 3.050000e-61 246.0
6 TraesCS6A01G044900 chr5A 96.600 2206 56 12 1331 3524 598264798 598262600 0.000000e+00 3640.0
7 TraesCS6A01G044900 chr5A 95.452 2199 59 11 1331 3524 702485608 702483446 0.000000e+00 3469.0
8 TraesCS6A01G044900 chr5A 97.667 643 13 2 614 1256 702486244 702485604 0.000000e+00 1103.0
9 TraesCS6A01G044900 chr5A 97.512 643 13 3 614 1256 598265433 598264794 0.000000e+00 1096.0
10 TraesCS6A01G044900 chr5A 96.916 616 17 2 1 615 598267840 598267226 0.000000e+00 1031.0
11 TraesCS6A01G044900 chr5A 97.386 459 11 1 1 459 702488952 702488495 0.000000e+00 780.0
12 TraesCS6A01G044900 chr5A 91.892 481 34 5 3472 3951 598262316 598261840 0.000000e+00 667.0
13 TraesCS6A01G044900 chr5A 94.789 403 19 2 3549 3951 702483100 702482700 9.320000e-176 627.0
14 TraesCS6A01G044900 chr5A 95.167 269 11 2 1 268 702482387 702482654 1.310000e-114 424.0
15 TraesCS6A01G044900 chr5A 93.491 169 11 0 3477 3645 702483530 702483362 6.550000e-63 252.0
16 TraesCS6A01G044900 chr5A 92.899 169 12 0 3477 3645 598262684 598262516 3.050000e-61 246.0
17 TraesCS6A01G044900 chr5A 98.667 75 1 0 541 615 702488045 702487971 2.480000e-27 134.0
18 TraesCS6A01G044900 chr7A 82.910 2007 255 66 1334 3304 706579263 706577309 0.000000e+00 1725.0
19 TraesCS6A01G044900 chr7A 83.043 1952 268 46 1341 3258 115522811 115524733 0.000000e+00 1712.0
20 TraesCS6A01G044900 chr7A 89.655 435 40 4 616 1047 115522330 115522762 2.080000e-152 549.0
21 TraesCS6A01G044900 chr7A 87.773 458 51 4 614 1068 706579750 706579295 7.520000e-147 531.0
22 TraesCS6A01G044900 chr3A 84.872 1527 202 26 1341 2854 659640590 659642100 0.000000e+00 1513.0
23 TraesCS6A01G044900 chr3A 84.822 1489 200 23 1334 2811 659635481 659636954 0.000000e+00 1474.0
24 TraesCS6A01G044900 chr3A 80.887 293 46 8 3009 3298 659642301 659642586 5.140000e-54 222.0
25 TraesCS6A01G044900 chr3A 95.833 48 2 0 614 661 659635053 659635100 1.180000e-10 78.7
26 TraesCS6A01G044900 chr3A 93.750 48 2 1 614 661 659640153 659640199 1.970000e-08 71.3
27 TraesCS6A01G044900 chrUn 85.125 1116 138 14 1330 2439 417494675 417495768 0.000000e+00 1116.0
28 TraesCS6A01G044900 chr7B 98.507 469 7 0 614 1082 56909914 56909446 0.000000e+00 828.0
29 TraesCS6A01G044900 chr7B 90.865 613 37 5 3 615 56912301 56911708 0.000000e+00 804.0
30 TraesCS6A01G044900 chr7B 92.874 421 26 1 3225 3645 56909392 56908976 3.380000e-170 608.0
31 TraesCS6A01G044900 chr7B 95.167 269 11 2 1 268 56908291 56908558 1.310000e-114 424.0
32 TraesCS6A01G044900 chr7B 87.188 320 37 3 3472 3791 56908906 56908591 1.040000e-95 361.0
33 TraesCS6A01G044900 chr5D 85.342 614 72 8 9 615 410278938 410279540 1.560000e-173 619.0
34 TraesCS6A01G044900 chr1A 95.253 316 13 2 1 315 373292787 373292473 2.120000e-137 499.0
35 TraesCS6A01G044900 chr1A 93.072 332 21 2 1 331 373272794 373273124 5.940000e-133 484.0
36 TraesCS6A01G044900 chr1A 87.675 357 40 4 3472 3828 373292120 373292472 2.840000e-111 412.0
37 TraesCS6A01G044900 chr1A 91.818 110 9 0 327 436 373291947 373292056 1.900000e-33 154.0
38 TraesCS6A01G044900 chr4A 92.905 296 21 0 614 909 703439737 703440032 7.840000e-117 431.0
39 TraesCS6A01G044900 chr4A 95.652 46 0 1 1081 1126 45213069 45213112 5.480000e-09 73.1
40 TraesCS6A01G044900 chr2B 81.553 412 71 5 614 1023 708820560 708820152 6.330000e-88 335.0
41 TraesCS6A01G044900 chr6B 93.333 225 11 2 1084 1308 94302482 94302262 2.940000e-86 329.0
42 TraesCS6A01G044900 chr6B 81.250 160 14 7 3188 3346 38762125 38761981 8.970000e-22 115.0
43 TraesCS6A01G044900 chr4B 76.715 627 106 27 2691 3298 11728502 11729107 2.960000e-81 313.0
44 TraesCS6A01G044900 chr2D 91.342 231 16 2 1084 1314 601808168 601807942 2.960000e-81 313.0
45 TraesCS6A01G044900 chr3B 95.361 194 7 1 1115 1308 147162468 147162659 1.380000e-79 307.0
46 TraesCS6A01G044900 chr3B 90.909 55 2 2 1073 1126 692761322 692761374 1.970000e-08 71.3
47 TraesCS6A01G044900 chr1D 95.361 194 7 1 1115 1308 320824091 320824282 1.380000e-79 307.0
48 TraesCS6A01G044900 chr6D 94.845 194 9 1 1115 1308 397666203 397666395 6.420000e-78 302.0
49 TraesCS6A01G044900 chr6D 83.537 164 16 5 3188 3348 14899014 14899169 4.120000e-30 143.0
50 TraesCS6A01G044900 chr7D 90.476 231 16 4 1084 1314 12931364 12931140 2.310000e-77 300.0
51 TraesCS6A01G044900 chr2A 75.712 597 99 30 2726 3304 545835018 545834450 1.410000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G044900 chr6A 23384182 23388132 3950 False 7297.000000 7297 100.0000 1 3951 1 chr6A.!!$F1 3950
1 TraesCS6A01G044900 chr6A 140725478 140730250 4772 True 1264.400000 3657 95.0988 1 3951 5 chr6A.!!$R1 3950
2 TraesCS6A01G044900 chr5A 598261840 598267840 6000 True 1336.000000 3640 95.1638 1 3951 5 chr5A.!!$R1 3950
3 TraesCS6A01G044900 chr5A 702482700 702488952 6252 True 1060.833333 3469 96.2420 1 3951 6 chr5A.!!$R2 3950
4 TraesCS6A01G044900 chr7A 115522330 115524733 2403 False 1130.500000 1712 86.3490 616 3258 2 chr7A.!!$F1 2642
5 TraesCS6A01G044900 chr7A 706577309 706579750 2441 True 1128.000000 1725 85.3415 614 3304 2 chr7A.!!$R1 2690
6 TraesCS6A01G044900 chr3A 659635053 659642586 7533 False 671.800000 1513 88.0328 614 3298 5 chr3A.!!$F1 2684
7 TraesCS6A01G044900 chrUn 417494675 417495768 1093 False 1116.000000 1116 85.1250 1330 2439 1 chrUn.!!$F1 1109
8 TraesCS6A01G044900 chr7B 56908591 56912301 3710 True 650.250000 828 92.3585 3 3791 4 chr7B.!!$R1 3788
9 TraesCS6A01G044900 chr5D 410278938 410279540 602 False 619.000000 619 85.3420 9 615 1 chr5D.!!$F1 606
10 TraesCS6A01G044900 chr1A 373291947 373292472 525 False 283.000000 412 89.7465 327 3828 2 chr1A.!!$F2 3501
11 TraesCS6A01G044900 chr4B 11728502 11729107 605 False 313.000000 313 76.7150 2691 3298 1 chr4B.!!$F1 607
12 TraesCS6A01G044900 chr2A 545834450 545835018 568 True 257.000000 257 75.7120 2726 3304 1 chr2A.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 2842 1.270907 GGCAGGAGTTGAGAAGGAGA 58.729 55.000 0.0 0.0 0.0 3.71 F
1857 9849 1.478654 GGGAGGCAGAAAAGTGGACAA 60.479 52.381 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 10055 3.773667 TCTCAGGCTCAATTCTCTCATGT 59.226 43.478 0.0 0.0 0.0 3.21 R
3691 12378 0.175760 CGAGTGGGTAGATGGTGTGG 59.824 60.000 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.100344 TCACTGGTAGTCACTAAACTTGCA 59.900 41.667 0.00 0.00 0.00 4.08
243 245 2.916934 ACAGACCCCCTGCACTTATTTA 59.083 45.455 0.00 0.00 46.81 1.40
244 246 3.527665 ACAGACCCCCTGCACTTATTTAT 59.472 43.478 0.00 0.00 46.81 1.40
245 247 4.017499 ACAGACCCCCTGCACTTATTTATT 60.017 41.667 0.00 0.00 46.81 1.40
347 350 3.053693 CCATTCATTCTAACTCCCCACCA 60.054 47.826 0.00 0.00 0.00 4.17
529 545 5.130643 TCCTCCGTCTAGTTTCTCTCATCTA 59.869 44.000 0.00 0.00 0.00 1.98
666 2842 1.270907 GGCAGGAGTTGAGAAGGAGA 58.729 55.000 0.00 0.00 0.00 3.71
817 3709 6.866480 TGCAGACCAATAATTTTCCTTGATC 58.134 36.000 0.00 0.00 0.00 2.92
1126 4019 2.824489 AGCCGCTCGAGATCGACA 60.824 61.111 18.75 0.00 44.22 4.35
1310 4203 7.873719 TTTATTACCATGTATGTTGTCCCTG 57.126 36.000 0.00 0.00 0.00 4.45
1311 4204 5.708736 ATTACCATGTATGTTGTCCCTGA 57.291 39.130 0.00 0.00 0.00 3.86
1312 4205 5.708736 TTACCATGTATGTTGTCCCTGAT 57.291 39.130 0.00 0.00 0.00 2.90
1313 4206 4.591321 ACCATGTATGTTGTCCCTGATT 57.409 40.909 0.00 0.00 0.00 2.57
1314 4207 4.526970 ACCATGTATGTTGTCCCTGATTC 58.473 43.478 0.00 0.00 0.00 2.52
1315 4208 4.018506 ACCATGTATGTTGTCCCTGATTCA 60.019 41.667 0.00 0.00 0.00 2.57
1316 4209 4.577693 CCATGTATGTTGTCCCTGATTCAG 59.422 45.833 6.70 6.70 0.00 3.02
1317 4210 5.430886 CATGTATGTTGTCCCTGATTCAGA 58.569 41.667 15.36 0.00 32.44 3.27
1318 4211 5.497464 TGTATGTTGTCCCTGATTCAGAA 57.503 39.130 15.36 0.00 32.44 3.02
1319 4212 5.245531 TGTATGTTGTCCCTGATTCAGAAC 58.754 41.667 15.36 11.26 32.44 3.01
1320 4213 3.855255 TGTTGTCCCTGATTCAGAACA 57.145 42.857 15.36 13.53 32.44 3.18
1321 4214 4.371624 TGTTGTCCCTGATTCAGAACAT 57.628 40.909 15.36 0.00 32.44 2.71
1322 4215 4.074259 TGTTGTCCCTGATTCAGAACATG 58.926 43.478 15.36 0.00 32.44 3.21
1323 4216 4.202451 TGTTGTCCCTGATTCAGAACATGA 60.202 41.667 15.36 6.06 32.44 3.07
1324 4217 4.212143 TGTCCCTGATTCAGAACATGAG 57.788 45.455 15.36 0.00 39.68 2.90
1325 4218 3.840078 TGTCCCTGATTCAGAACATGAGA 59.160 43.478 15.36 0.23 39.68 3.27
1326 4219 4.081254 TGTCCCTGATTCAGAACATGAGAG 60.081 45.833 15.36 0.00 39.68 3.20
1327 4220 4.081198 GTCCCTGATTCAGAACATGAGAGT 60.081 45.833 15.36 0.00 39.68 3.24
1328 4221 4.161189 TCCCTGATTCAGAACATGAGAGTC 59.839 45.833 15.36 0.00 39.68 3.36
1329 4222 4.161942 CCCTGATTCAGAACATGAGAGTCT 59.838 45.833 15.36 0.00 39.68 3.24
1384 4277 4.787551 TGCTGTGAAGAAAGTTTTCCCTA 58.212 39.130 1.16 0.00 37.92 3.53
1532 9524 7.328982 CAGAAACATGGATAAGATGAGAGATCG 59.671 40.741 0.00 0.00 0.00 3.69
1857 9849 1.478654 GGGAGGCAGAAAAGTGGACAA 60.479 52.381 0.00 0.00 0.00 3.18
1858 9850 2.519013 GGAGGCAGAAAAGTGGACAAT 58.481 47.619 0.00 0.00 0.00 2.71
2063 10055 6.587226 GTCATCATGCAATTGCTTGTTTTAGA 59.413 34.615 32.95 23.79 43.88 2.10
2086 10078 4.224594 ACATGAGAGAATTGAGCCTGAGAA 59.775 41.667 0.00 0.00 0.00 2.87
2101 10093 4.686944 GCCTGAGAACATGGTCCATTCATA 60.687 45.833 7.26 0.00 0.00 2.15
2228 10220 2.969821 ACACCAAAGTAATGGGCAGA 57.030 45.000 0.00 0.00 45.18 4.26
2807 10857 0.036732 GACAACAGCCATGTCCAGGA 59.963 55.000 3.42 0.00 41.02 3.86
2859 11005 3.576078 TGCAACAAGAGGAGGAAGAAA 57.424 42.857 0.00 0.00 0.00 2.52
2950 11097 2.224992 TGCAACAAGGGAGGCAGAATAA 60.225 45.455 0.00 0.00 0.00 1.40
3085 11259 6.117975 ACTTGCTTTTTGGAAATGATGGAT 57.882 33.333 0.00 0.00 0.00 3.41
3221 11396 6.485830 TTTCCTATCTCTGTAGTTGGATGG 57.514 41.667 0.00 0.00 0.00 3.51
3304 11499 4.039852 GCTCCTTTTGTTGGGGTAAATCAA 59.960 41.667 0.00 0.00 0.00 2.57
3442 11637 9.553064 CTATGACTGTTTATGGAGCTATCTTTT 57.447 33.333 0.00 0.00 0.00 2.27
3470 11665 8.704668 TCCTCTACATATGCATTTTTCTGTCTA 58.295 33.333 3.54 0.00 0.00 2.59
3506 11701 7.223193 CCCAAAATCAGTATGCACATATGTTTG 59.777 37.037 5.37 3.77 34.76 2.93
3515 11710 5.233957 TGCACATATGTTTGCTGTCATAC 57.766 39.130 16.59 0.00 39.62 2.39
3529 11724 4.188462 CTGTCATACGCCCAAAATCAGTA 58.812 43.478 0.00 0.00 0.00 2.74
3646 12332 9.341899 GATATGTTCACAGTCATAAACCAAAAC 57.658 33.333 0.00 0.00 31.67 2.43
3650 12336 8.687242 TGTTCACAGTCATAAACCAAAACAATA 58.313 29.630 0.00 0.00 0.00 1.90
3691 12378 0.602905 AGACCGTGCTAGCAACAACC 60.603 55.000 21.29 5.51 0.00 3.77
3703 12390 1.539827 GCAACAACCCACACCATCTAC 59.460 52.381 0.00 0.00 0.00 2.59
3849 12536 1.308069 GGCGACACCCGTGACTACTA 61.308 60.000 0.96 0.00 41.15 1.82
3894 12581 4.273318 GCCATCCAGTACTTCTTCCAAAT 58.727 43.478 0.00 0.00 0.00 2.32
3915 12602 0.754957 CATTTCCCGCCATTAGCCCA 60.755 55.000 0.00 0.00 38.78 5.36
3938 12625 1.530323 GCCACAGTGTTATTTCCCGT 58.470 50.000 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.424703 AGCACTAAACTGCACATCCAAT 58.575 40.909 0.00 0.00 39.86 3.16
407 416 2.621338 GTTCATTCATCGCCTCTGACA 58.379 47.619 0.00 0.00 0.00 3.58
489 505 3.086600 GAGAGCAGGGAGGGGGTG 61.087 72.222 0.00 0.00 0.00 4.61
490 506 4.423209 GGAGAGCAGGGAGGGGGT 62.423 72.222 0.00 0.00 0.00 4.95
491 507 4.101077 AGGAGAGCAGGGAGGGGG 62.101 72.222 0.00 0.00 0.00 5.40
492 508 2.445654 GAGGAGAGCAGGGAGGGG 60.446 72.222 0.00 0.00 0.00 4.79
493 509 2.445654 GGAGGAGAGCAGGGAGGG 60.446 72.222 0.00 0.00 0.00 4.30
494 510 2.837291 CGGAGGAGAGCAGGGAGG 60.837 72.222 0.00 0.00 0.00 4.30
529 545 2.836981 CAGGAAGAAGATGACCAGGAGT 59.163 50.000 0.00 0.00 0.00 3.85
666 2842 5.212472 AGAAAAATAGGCTCCCTGGATTT 57.788 39.130 0.00 0.00 34.61 2.17
792 3641 6.271488 TCAAGGAAAATTATTGGTCTGCAG 57.729 37.500 7.63 7.63 0.00 4.41
817 3709 9.265938 CTTATATCTTGTTTTGATGTGACAACG 57.734 33.333 0.00 0.00 0.00 4.10
1126 4019 2.822764 ACTCAGCTCGTTTCTTTTCGT 58.177 42.857 0.00 0.00 0.00 3.85
1284 4177 8.912988 CAGGGACAACATACATGGTAATAAATT 58.087 33.333 0.00 0.00 0.00 1.82
1285 4178 8.278639 TCAGGGACAACATACATGGTAATAAAT 58.721 33.333 0.00 0.00 0.00 1.40
1286 4179 7.634718 TCAGGGACAACATACATGGTAATAAA 58.365 34.615 0.00 0.00 0.00 1.40
1287 4180 7.201702 TCAGGGACAACATACATGGTAATAA 57.798 36.000 0.00 0.00 0.00 1.40
1288 4181 6.816616 TCAGGGACAACATACATGGTAATA 57.183 37.500 0.00 0.00 0.00 0.98
1289 4182 5.708736 TCAGGGACAACATACATGGTAAT 57.291 39.130 0.00 0.00 0.00 1.89
1290 4183 5.708736 ATCAGGGACAACATACATGGTAA 57.291 39.130 0.00 0.00 0.00 2.85
1291 4184 5.190726 TGAATCAGGGACAACATACATGGTA 59.809 40.000 0.00 0.00 0.00 3.25
1292 4185 4.018506 TGAATCAGGGACAACATACATGGT 60.019 41.667 0.00 0.00 0.00 3.55
1293 4186 4.525996 TGAATCAGGGACAACATACATGG 58.474 43.478 0.00 0.00 0.00 3.66
1294 4187 5.430886 TCTGAATCAGGGACAACATACATG 58.569 41.667 10.71 0.00 31.51 3.21
1295 4188 5.698741 TCTGAATCAGGGACAACATACAT 57.301 39.130 10.71 0.00 31.51 2.29
1296 4189 5.221823 TGTTCTGAATCAGGGACAACATACA 60.222 40.000 10.71 0.00 30.00 2.29
1297 4190 5.245531 TGTTCTGAATCAGGGACAACATAC 58.754 41.667 10.71 0.00 30.00 2.39
1298 4191 5.497464 TGTTCTGAATCAGGGACAACATA 57.503 39.130 10.71 0.00 30.00 2.29
1299 4192 4.371624 TGTTCTGAATCAGGGACAACAT 57.628 40.909 10.71 0.00 30.00 2.71
1300 4193 3.855255 TGTTCTGAATCAGGGACAACA 57.145 42.857 10.71 10.35 30.00 3.33
1301 4194 4.326826 TCATGTTCTGAATCAGGGACAAC 58.673 43.478 18.77 12.74 34.03 3.32
1302 4195 4.286808 TCTCATGTTCTGAATCAGGGACAA 59.713 41.667 18.77 7.68 34.03 3.18
1303 4196 3.840078 TCTCATGTTCTGAATCAGGGACA 59.160 43.478 17.73 17.73 34.50 4.02
1304 4197 4.081198 ACTCTCATGTTCTGAATCAGGGAC 60.081 45.833 10.71 10.06 32.14 4.46
1305 4198 4.099633 ACTCTCATGTTCTGAATCAGGGA 58.900 43.478 10.71 0.00 32.14 4.20
1306 4199 4.161942 AGACTCTCATGTTCTGAATCAGGG 59.838 45.833 10.71 0.00 32.14 4.45
1307 4200 5.110598 CAGACTCTCATGTTCTGAATCAGG 58.889 45.833 10.71 0.00 32.14 3.86
1308 4201 5.577554 CACAGACTCTCATGTTCTGAATCAG 59.422 44.000 17.43 3.38 32.14 2.90
1309 4202 5.244626 TCACAGACTCTCATGTTCTGAATCA 59.755 40.000 17.43 0.00 32.14 2.57
1310 4203 5.718146 TCACAGACTCTCATGTTCTGAATC 58.282 41.667 17.43 3.49 32.14 2.52
1311 4204 5.735285 TCACAGACTCTCATGTTCTGAAT 57.265 39.130 17.43 1.03 32.14 2.57
1312 4205 5.011431 ACATCACAGACTCTCATGTTCTGAA 59.989 40.000 17.43 9.31 32.14 3.02
1313 4206 4.525874 ACATCACAGACTCTCATGTTCTGA 59.474 41.667 17.43 3.11 33.15 3.27
1314 4207 4.818642 ACATCACAGACTCTCATGTTCTG 58.181 43.478 12.03 12.03 34.85 3.02
1315 4208 5.480642 AACATCACAGACTCTCATGTTCT 57.519 39.130 0.00 0.00 33.36 3.01
1316 4209 7.332926 ACATAAACATCACAGACTCTCATGTTC 59.667 37.037 7.54 0.00 36.82 3.18
1317 4210 7.164122 ACATAAACATCACAGACTCTCATGTT 58.836 34.615 0.00 0.00 38.94 2.71
1318 4211 6.705302 ACATAAACATCACAGACTCTCATGT 58.295 36.000 0.00 0.00 0.00 3.21
1319 4212 7.118825 ACAACATAAACATCACAGACTCTCATG 59.881 37.037 0.00 0.00 0.00 3.07
1320 4213 7.164122 ACAACATAAACATCACAGACTCTCAT 58.836 34.615 0.00 0.00 0.00 2.90
1321 4214 6.524734 ACAACATAAACATCACAGACTCTCA 58.475 36.000 0.00 0.00 0.00 3.27
1322 4215 7.041780 ACAACAACATAAACATCACAGACTCTC 60.042 37.037 0.00 0.00 0.00 3.20
1323 4216 6.767902 ACAACAACATAAACATCACAGACTCT 59.232 34.615 0.00 0.00 0.00 3.24
1324 4217 6.959361 ACAACAACATAAACATCACAGACTC 58.041 36.000 0.00 0.00 0.00 3.36
1325 4218 6.942532 ACAACAACATAAACATCACAGACT 57.057 33.333 0.00 0.00 0.00 3.24
1326 4219 7.298122 CCTACAACAACATAAACATCACAGAC 58.702 38.462 0.00 0.00 0.00 3.51
1327 4220 6.429692 CCCTACAACAACATAAACATCACAGA 59.570 38.462 0.00 0.00 0.00 3.41
1328 4221 6.206634 ACCCTACAACAACATAAACATCACAG 59.793 38.462 0.00 0.00 0.00 3.66
1329 4222 6.065374 ACCCTACAACAACATAAACATCACA 58.935 36.000 0.00 0.00 0.00 3.58
1384 4277 7.607991 CCTAACACAGTTCCTATGTTCTGAATT 59.392 37.037 0.00 0.00 37.68 2.17
1411 4304 8.800370 ACTTTGTGGAAATTTTGGTAAATGTT 57.200 26.923 0.00 0.00 34.27 2.71
1607 9599 9.394767 TGTTATTCAGCAATATATCACACTTGT 57.605 29.630 0.00 0.00 0.00 3.16
2063 10055 3.773667 TCTCAGGCTCAATTCTCTCATGT 59.226 43.478 0.00 0.00 0.00 3.21
2086 10078 5.189736 ACAGTGTAGTATGAATGGACCATGT 59.810 40.000 8.02 0.06 0.00 3.21
2101 10093 5.138276 TCTTGTACTCCTCAACAGTGTAGT 58.862 41.667 0.00 0.00 0.00 2.73
2807 10857 0.907230 GTTCCTCCTCTCACCCTGCT 60.907 60.000 0.00 0.00 0.00 4.24
2950 11097 2.762327 CTCCCCTTGTTGCATTGCTTAT 59.238 45.455 10.49 0.00 0.00 1.73
2996 11143 2.214376 TCCACTTGGGTAATTGCCAG 57.786 50.000 14.98 6.64 38.11 4.85
3085 11259 1.178534 GGTGGTTGCTGGCTGCTTTA 61.179 55.000 17.45 0.49 43.37 1.85
3221 11396 4.771590 TTCATGAACTTCATCACTTGGC 57.228 40.909 3.38 0.00 34.28 4.52
3442 11637 8.579850 ACAGAAAAATGCATATGTAGAGGAAA 57.420 30.769 0.00 0.00 0.00 3.13
3470 11665 7.828223 TGCATACTGATTTTGGGCATAAAAATT 59.172 29.630 3.54 0.00 37.35 1.82
3492 11687 4.994907 ATGACAGCAAACATATGTGCAT 57.005 36.364 17.67 7.64 43.42 3.96
3506 11701 1.742831 TGATTTTGGGCGTATGACAGC 59.257 47.619 0.00 0.00 0.00 4.40
3515 11710 1.472082 TGTGCATACTGATTTTGGGCG 59.528 47.619 0.00 0.00 0.00 6.13
3646 12332 1.949525 CGAATCCCAGGCCACTTATTG 59.050 52.381 5.01 0.00 0.00 1.90
3650 12336 0.322546 GTTCGAATCCCAGGCCACTT 60.323 55.000 5.01 0.00 0.00 3.16
3691 12378 0.175760 CGAGTGGGTAGATGGTGTGG 59.824 60.000 0.00 0.00 0.00 4.17
3799 12486 7.095565 CGTATCTCTTACATCTGTCAGACGTAT 60.096 40.741 9.45 0.00 0.00 3.06
3894 12581 0.467290 GGCTAATGGCGGGAAATGGA 60.467 55.000 0.00 0.00 42.94 3.41
3915 12602 2.423577 GGAAATAACACTGTGGCGAGT 58.576 47.619 13.09 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.