Multiple sequence alignment - TraesCS6A01G044600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G044600 chr6A 100.000 4539 0 0 1 4539 23354685 23359223 0.000000e+00 8383.0
1 TraesCS6A01G044600 chr6A 95.265 697 33 0 3758 4454 301094620 301093924 0.000000e+00 1105.0
2 TraesCS6A01G044600 chr6A 94.177 498 29 0 3269 3766 591796210 591795713 0.000000e+00 760.0
3 TraesCS6A01G044600 chr6A 96.226 106 4 0 394 499 40170259 40170364 1.680000e-39 174.0
4 TraesCS6A01G044600 chr6A 96.226 106 4 0 394 499 557906761 557906866 1.680000e-39 174.0
5 TraesCS6A01G044600 chr6A 97.222 36 1 0 3168 3203 79702095 79702060 1.360000e-05 62.1
6 TraesCS6A01G044600 chr6D 94.034 1475 72 7 1617 3083 24823455 24824921 0.000000e+00 2222.0
7 TraesCS6A01G044600 chr6D 93.571 980 34 7 489 1458 24822213 24823173 0.000000e+00 1434.0
8 TraesCS6A01G044600 chr6D 94.350 354 20 0 2338 2691 24810978 24811331 1.110000e-150 544.0
9 TraesCS6A01G044600 chr6D 92.833 293 19 2 106 396 24821923 24822215 1.510000e-114 424.0
10 TraesCS6A01G044600 chr6B 91.524 1463 64 28 1617 3061 40456589 40455169 0.000000e+00 1960.0
11 TraesCS6A01G044600 chr6B 94.455 505 22 3 489 987 40457895 40457391 0.000000e+00 773.0
12 TraesCS6A01G044600 chr6B 92.771 415 21 3 1004 1415 40457232 40456824 3.910000e-165 592.0
13 TraesCS6A01G044600 chr6B 85.294 306 28 6 106 396 40458196 40457893 2.650000e-77 300.0
14 TraesCS6A01G044600 chr6B 97.674 43 1 0 3111 3153 40455151 40455109 1.750000e-09 75.0
15 TraesCS6A01G044600 chr1A 96.280 699 24 1 3758 4454 585986089 585985391 0.000000e+00 1146.0
16 TraesCS6A01G044600 chr1A 94.589 499 26 1 3269 3766 585986646 585986148 0.000000e+00 771.0
17 TraesCS6A01G044600 chr1A 93.613 501 32 0 3266 3766 285352079 285352579 0.000000e+00 749.0
18 TraesCS6A01G044600 chr1A 92.857 504 33 3 3264 3766 105284387 105283886 0.000000e+00 728.0
19 TraesCS6A01G044600 chr5A 94.842 698 33 3 3758 4454 457518124 457518819 0.000000e+00 1086.0
20 TraesCS6A01G044600 chr5A 93.571 700 42 2 3761 4457 103567469 103566770 0.000000e+00 1040.0
21 TraesCS6A01G044600 chr5A 93.600 500 31 1 3267 3766 677830889 677831387 0.000000e+00 745.0
22 TraesCS6A01G044600 chr5A 99.000 100 1 0 394 493 66095867 66095768 3.610000e-41 180.0
23 TraesCS6A01G044600 chr7A 94.707 699 34 2 3758 4454 510161398 510162095 0.000000e+00 1083.0
24 TraesCS6A01G044600 chr7A 94.200 500 29 0 3267 3766 510160840 510161339 0.000000e+00 763.0
25 TraesCS6A01G044600 chr7A 92.400 500 37 1 3267 3766 230612142 230611644 0.000000e+00 712.0
26 TraesCS6A01G044600 chr7A 91.473 129 10 1 1493 1620 96224019 96223891 4.670000e-40 176.0
27 TraesCS6A01G044600 chr7A 91.935 124 10 0 1493 1616 33544115 33544238 1.680000e-39 174.0
28 TraesCS6A01G044600 chr7A 97.368 38 1 0 3166 3203 520912670 520912633 1.050000e-06 65.8
29 TraesCS6A01G044600 chr3D 93.857 700 42 1 3758 4457 591376701 591376003 0.000000e+00 1053.0
30 TraesCS6A01G044600 chr3D 93.848 699 41 1 3758 4454 47339574 47338876 0.000000e+00 1051.0
31 TraesCS6A01G044600 chr3D 93.562 699 42 2 3758 4454 335200019 335200716 0.000000e+00 1038.0
32 TraesCS6A01G044600 chr3D 91.870 123 10 0 1493 1615 589208618 589208740 6.040000e-39 172.0
33 TraesCS6A01G044600 chr3A 93.419 699 44 1 3758 4454 718079533 718080231 0.000000e+00 1035.0
34 TraesCS6A01G044600 chr3A 93.000 500 35 0 3267 3766 212539957 212540456 0.000000e+00 730.0
35 TraesCS6A01G044600 chr3A 93.023 43 2 1 3161 3203 70802006 70801965 1.360000e-05 62.1
36 TraesCS6A01G044600 chr4A 93.663 505 31 1 3262 3766 225304698 225305201 0.000000e+00 754.0
37 TraesCS6A01G044600 chr4A 96.226 106 4 0 394 499 573631007 573631112 1.680000e-39 174.0
38 TraesCS6A01G044600 chr4A 78.409 264 39 16 491 745 467536169 467536423 6.080000e-34 156.0
39 TraesCS6A01G044600 chr4A 97.436 39 1 0 3164 3202 677438112 677438150 2.930000e-07 67.6
40 TraesCS6A01G044600 chr4A 97.368 38 1 0 3166 3203 340494882 340494845 1.050000e-06 65.8
41 TraesCS6A01G044600 chr4A 97.222 36 1 0 3168 3203 40493764 40493729 1.360000e-05 62.1
42 TraesCS6A01G044600 chr7D 95.798 119 5 0 1494 1612 80270050 80270168 4.630000e-45 193.0
43 TraesCS6A01G044600 chr7D 97.170 106 3 0 394 499 617181664 617181769 3.610000e-41 180.0
44 TraesCS6A01G044600 chr7D 98.020 101 2 0 393 493 489010784 489010684 4.670000e-40 176.0
45 TraesCS6A01G044600 chr2D 100.000 98 0 0 393 490 468096943 468096846 1.000000e-41 182.0
46 TraesCS6A01G044600 chr2D 96.226 106 4 0 394 499 532305998 532305893 1.680000e-39 174.0
47 TraesCS6A01G044600 chr7B 92.742 124 9 0 1493 1616 482819898 482820021 3.610000e-41 180.0
48 TraesCS6A01G044600 chr7B 92.742 124 9 0 1493 1616 630546993 630546870 3.610000e-41 180.0
49 TraesCS6A01G044600 chr2A 99.000 100 1 0 391 490 268936603 268936702 3.610000e-41 180.0
50 TraesCS6A01G044600 chr2A 97.297 37 1 0 3166 3202 123568517 123568553 3.790000e-06 63.9
51 TraesCS6A01G044600 chr4D 78.909 275 44 12 491 758 108857931 108857664 1.680000e-39 174.0
52 TraesCS6A01G044600 chr4D 97.297 37 1 0 3166 3202 471258302 471258266 3.790000e-06 63.9
53 TraesCS6A01G044600 chr4B 78.909 275 44 12 491 758 167938221 167938488 1.680000e-39 174.0
54 TraesCS6A01G044600 chr3B 91.935 124 10 0 1493 1616 246163850 246163973 1.680000e-39 174.0
55 TraesCS6A01G044600 chr3B 92.562 121 9 0 1493 1613 368115300 368115420 1.680000e-39 174.0
56 TraesCS6A01G044600 chr3B 91.200 125 11 0 1492 1616 187490196 187490320 2.170000e-38 171.0
57 TraesCS6A01G044600 chr1B 97.222 36 1 0 3168 3203 106767543 106767508 1.360000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G044600 chr6A 23354685 23359223 4538 False 8383.0 8383 100.000000 1 4539 1 chr6A.!!$F1 4538
1 TraesCS6A01G044600 chr6A 301093924 301094620 696 True 1105.0 1105 95.265000 3758 4454 1 chr6A.!!$R2 696
2 TraesCS6A01G044600 chr6D 24821923 24824921 2998 False 1360.0 2222 93.479333 106 3083 3 chr6D.!!$F2 2977
3 TraesCS6A01G044600 chr6B 40455109 40458196 3087 True 740.0 1960 92.343600 106 3153 5 chr6B.!!$R1 3047
4 TraesCS6A01G044600 chr1A 585985391 585986646 1255 True 958.5 1146 95.434500 3269 4454 2 chr1A.!!$R2 1185
5 TraesCS6A01G044600 chr1A 285352079 285352579 500 False 749.0 749 93.613000 3266 3766 1 chr1A.!!$F1 500
6 TraesCS6A01G044600 chr1A 105283886 105284387 501 True 728.0 728 92.857000 3264 3766 1 chr1A.!!$R1 502
7 TraesCS6A01G044600 chr5A 457518124 457518819 695 False 1086.0 1086 94.842000 3758 4454 1 chr5A.!!$F1 696
8 TraesCS6A01G044600 chr5A 103566770 103567469 699 True 1040.0 1040 93.571000 3761 4457 1 chr5A.!!$R2 696
9 TraesCS6A01G044600 chr7A 510160840 510162095 1255 False 923.0 1083 94.453500 3267 4454 2 chr7A.!!$F2 1187
10 TraesCS6A01G044600 chr3D 591376003 591376701 698 True 1053.0 1053 93.857000 3758 4457 1 chr3D.!!$R2 699
11 TraesCS6A01G044600 chr3D 47338876 47339574 698 True 1051.0 1051 93.848000 3758 4454 1 chr3D.!!$R1 696
12 TraesCS6A01G044600 chr3D 335200019 335200716 697 False 1038.0 1038 93.562000 3758 4454 1 chr3D.!!$F1 696
13 TraesCS6A01G044600 chr3A 718079533 718080231 698 False 1035.0 1035 93.419000 3758 4454 1 chr3A.!!$F2 696
14 TraesCS6A01G044600 chr4A 225304698 225305201 503 False 754.0 754 93.663000 3262 3766 1 chr4A.!!$F1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 426 0.033405 CTCCTACTCCCTCCGTTCCA 60.033 60.0 0.0 0.0 0.0 3.53 F
2091 2525 0.034337 TACGGGACTGTGTGAAAGCC 59.966 55.0 0.0 0.0 0.0 4.35 F
3164 3620 0.179045 GTGCTGACGATGGGGCTATT 60.179 55.0 0.0 0.0 0.0 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2540 0.035881 CATGGCCGATGCATAGAGGT 59.964 55.0 8.55 0.0 40.13 3.85 R
3207 3663 0.034756 TACACACGTGAGCAGGCAAT 59.965 50.0 25.01 0.0 0.00 3.56 R
4511 5040 0.248054 CGCGCGGTGCTCATAAATTT 60.248 50.0 24.84 0.0 43.27 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.682155 TCCGTGCTATATGTGTGCAA 57.318 45.000 0.00 0.00 38.50 4.08
20 21 2.549926 TCCGTGCTATATGTGTGCAAG 58.450 47.619 0.00 0.00 38.50 4.01
21 22 2.093711 TCCGTGCTATATGTGTGCAAGT 60.094 45.455 0.00 0.00 38.50 3.16
22 23 3.131400 TCCGTGCTATATGTGTGCAAGTA 59.869 43.478 0.00 0.00 38.50 2.24
23 24 3.245284 CCGTGCTATATGTGTGCAAGTAC 59.755 47.826 0.00 0.00 38.50 2.73
24 25 4.112634 CGTGCTATATGTGTGCAAGTACT 58.887 43.478 0.00 0.00 38.50 2.73
25 26 4.026558 CGTGCTATATGTGTGCAAGTACTG 60.027 45.833 0.00 0.00 38.50 2.74
45 46 9.698309 AGTACTGCTATATTGTTCACATATCAC 57.302 33.333 0.00 0.00 0.00 3.06
46 47 9.476202 GTACTGCTATATTGTTCACATATCACA 57.524 33.333 0.00 0.00 0.00 3.58
48 49 8.996271 ACTGCTATATTGTTCACATATCACATG 58.004 33.333 0.00 0.00 0.00 3.21
49 50 9.211485 CTGCTATATTGTTCACATATCACATGA 57.789 33.333 0.00 0.00 0.00 3.07
50 51 9.211485 TGCTATATTGTTCACATATCACATGAG 57.789 33.333 0.00 0.00 0.00 2.90
51 52 9.212641 GCTATATTGTTCACATATCACATGAGT 57.787 33.333 0.00 0.00 0.00 3.41
55 56 6.499234 TGTTCACATATCACATGAGTTTGG 57.501 37.500 0.00 0.00 0.00 3.28
56 57 6.237154 TGTTCACATATCACATGAGTTTGGA 58.763 36.000 0.00 0.00 0.00 3.53
57 58 6.149308 TGTTCACATATCACATGAGTTTGGAC 59.851 38.462 0.00 0.00 0.00 4.02
58 59 5.803552 TCACATATCACATGAGTTTGGACA 58.196 37.500 0.00 0.00 0.00 4.02
59 60 6.417258 TCACATATCACATGAGTTTGGACAT 58.583 36.000 0.00 0.00 0.00 3.06
60 61 6.885918 TCACATATCACATGAGTTTGGACATT 59.114 34.615 0.00 0.00 0.00 2.71
61 62 7.066163 TCACATATCACATGAGTTTGGACATTC 59.934 37.037 0.00 0.00 0.00 2.67
62 63 6.319658 ACATATCACATGAGTTTGGACATTCC 59.680 38.462 0.00 0.00 36.96 3.01
63 64 3.073678 TCACATGAGTTTGGACATTCCG 58.926 45.455 0.00 0.00 40.17 4.30
64 65 3.073678 CACATGAGTTTGGACATTCCGA 58.926 45.455 0.00 0.00 40.17 4.55
65 66 3.074412 ACATGAGTTTGGACATTCCGAC 58.926 45.455 0.00 0.00 40.17 4.79
66 67 2.920724 TGAGTTTGGACATTCCGACA 57.079 45.000 0.00 0.00 40.17 4.35
67 68 2.489971 TGAGTTTGGACATTCCGACAC 58.510 47.619 0.00 0.00 40.17 3.67
68 69 1.459592 GAGTTTGGACATTCCGACACG 59.540 52.381 0.00 0.00 40.17 4.49
78 79 2.258591 CCGACACGGTCCAGAGTG 59.741 66.667 1.80 0.00 42.73 3.51
79 80 2.430921 CGACACGGTCCAGAGTGC 60.431 66.667 0.00 0.00 41.72 4.40
80 81 2.430921 GACACGGTCCAGAGTGCG 60.431 66.667 0.00 0.00 41.72 5.34
81 82 3.208884 GACACGGTCCAGAGTGCGT 62.209 63.158 0.00 0.00 41.72 5.24
82 83 2.430921 CACGGTCCAGAGTGCGTC 60.431 66.667 0.00 0.00 0.00 5.19
83 84 2.597805 ACGGTCCAGAGTGCGTCT 60.598 61.111 0.00 0.00 35.00 4.18
93 94 2.755650 AGAGTGCGTCTGGTTAAGTTG 58.244 47.619 0.00 0.00 32.57 3.16
94 95 1.798813 GAGTGCGTCTGGTTAAGTTGG 59.201 52.381 0.00 0.00 0.00 3.77
95 96 1.414919 AGTGCGTCTGGTTAAGTTGGA 59.585 47.619 0.00 0.00 0.00 3.53
96 97 1.529865 GTGCGTCTGGTTAAGTTGGAC 59.470 52.381 0.00 0.00 0.00 4.02
98 99 2.144482 CGTCTGGTTAAGTTGGACGT 57.856 50.000 0.00 0.00 42.85 4.34
99 100 3.287312 CGTCTGGTTAAGTTGGACGTA 57.713 47.619 0.00 0.00 42.85 3.57
100 101 3.240069 CGTCTGGTTAAGTTGGACGTAG 58.760 50.000 0.00 0.00 42.85 3.51
101 102 3.582780 GTCTGGTTAAGTTGGACGTAGG 58.417 50.000 0.00 0.00 0.00 3.18
102 103 2.564062 TCTGGTTAAGTTGGACGTAGGG 59.436 50.000 0.00 0.00 0.00 3.53
103 104 2.301009 CTGGTTAAGTTGGACGTAGGGT 59.699 50.000 0.00 0.00 0.00 4.34
104 105 2.299867 TGGTTAAGTTGGACGTAGGGTC 59.700 50.000 0.00 0.00 45.31 4.46
118 119 1.606889 GGGTCAGGTCGGACTGTCT 60.607 63.158 8.23 0.00 39.48 3.41
134 136 3.997021 ACTGTCTAACTTGGCAGATTTCG 59.003 43.478 3.03 0.00 33.57 3.46
158 164 4.565564 GCAAGCTTTGCTTCTTAATGATGG 59.434 41.667 0.00 0.00 46.77 3.51
169 175 3.523157 TCTTAATGATGGTCCCTGCTTCA 59.477 43.478 0.00 0.00 0.00 3.02
201 207 5.242615 GTCCCTTCTTCTCTTTGCTTGATTT 59.757 40.000 0.00 0.00 0.00 2.17
208 214 7.576236 TCTTCTCTTTGCTTGATTTCTTTACG 58.424 34.615 0.00 0.00 0.00 3.18
244 251 4.732672 AAGTTCCGGAATGAGGTAGTAC 57.267 45.455 22.04 3.56 0.00 2.73
285 292 2.095604 AGGGAGCTCATAGAGGAACC 57.904 55.000 17.19 3.81 0.00 3.62
342 349 1.527380 GTCAACGGCCCACTTGGAA 60.527 57.895 0.00 0.00 37.39 3.53
347 354 0.469144 ACGGCCCACTTGGAATTTGT 60.469 50.000 0.00 0.00 37.39 2.83
385 403 2.401766 GGGATGCTTCGCACCACAG 61.402 63.158 11.24 0.00 43.04 3.66
395 413 1.376037 GCACCACAGTGGCTCCTAC 60.376 63.158 20.48 0.00 42.67 3.18
396 414 1.831652 GCACCACAGTGGCTCCTACT 61.832 60.000 20.48 0.00 42.67 2.57
397 415 0.247736 CACCACAGTGGCTCCTACTC 59.752 60.000 20.48 0.00 42.67 2.59
398 416 0.905337 ACCACAGTGGCTCCTACTCC 60.905 60.000 20.48 0.00 42.67 3.85
399 417 1.617947 CCACAGTGGCTCCTACTCCC 61.618 65.000 6.67 0.00 0.00 4.30
400 418 0.616111 CACAGTGGCTCCTACTCCCT 60.616 60.000 0.00 0.00 0.00 4.20
401 419 0.324830 ACAGTGGCTCCTACTCCCTC 60.325 60.000 0.00 0.00 0.00 4.30
402 420 1.045911 CAGTGGCTCCTACTCCCTCC 61.046 65.000 0.00 0.00 0.00 4.30
403 421 2.128507 GTGGCTCCTACTCCCTCCG 61.129 68.421 0.00 0.00 0.00 4.63
404 422 2.279408 GGCTCCTACTCCCTCCGT 59.721 66.667 0.00 0.00 0.00 4.69
405 423 1.381463 GGCTCCTACTCCCTCCGTT 60.381 63.158 0.00 0.00 0.00 4.44
406 424 1.393487 GGCTCCTACTCCCTCCGTTC 61.393 65.000 0.00 0.00 0.00 3.95
407 425 1.393487 GCTCCTACTCCCTCCGTTCC 61.393 65.000 0.00 0.00 0.00 3.62
408 426 0.033405 CTCCTACTCCCTCCGTTCCA 60.033 60.000 0.00 0.00 0.00 3.53
409 427 0.410663 TCCTACTCCCTCCGTTCCAA 59.589 55.000 0.00 0.00 0.00 3.53
410 428 1.203212 TCCTACTCCCTCCGTTCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
411 429 1.626825 CCTACTCCCTCCGTTCCAAAA 59.373 52.381 0.00 0.00 0.00 2.44
412 430 2.238898 CCTACTCCCTCCGTTCCAAAAT 59.761 50.000 0.00 0.00 0.00 1.82
413 431 3.453353 CCTACTCCCTCCGTTCCAAAATA 59.547 47.826 0.00 0.00 0.00 1.40
414 432 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
415 433 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
416 434 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
417 435 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
418 436 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
419 437 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
420 438 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
421 439 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
422 440 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
423 441 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
424 442 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
425 443 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
426 444 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
427 445 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
428 446 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
464 482 8.756486 AGTACAAAGTTAATACAAAGTTGGGT 57.244 30.769 0.00 0.00 0.00 4.51
465 483 8.843262 AGTACAAAGTTAATACAAAGTTGGGTC 58.157 33.333 0.00 0.00 0.00 4.46
466 484 7.648039 ACAAAGTTAATACAAAGTTGGGTCA 57.352 32.000 0.00 0.00 0.00 4.02
467 485 8.245195 ACAAAGTTAATACAAAGTTGGGTCAT 57.755 30.769 0.00 0.00 0.00 3.06
468 486 8.357402 ACAAAGTTAATACAAAGTTGGGTCATC 58.643 33.333 0.00 0.00 0.00 2.92
469 487 8.576442 CAAAGTTAATACAAAGTTGGGTCATCT 58.424 33.333 0.00 0.00 0.00 2.90
470 488 9.802039 AAAGTTAATACAAAGTTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
471 489 9.975218 AAGTTAATACAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
472 490 9.975218 AGTTAATACAAAGTTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
476 494 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
477 495 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
478 496 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
479 497 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
480 498 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
481 499 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
482 500 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
483 501 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
484 502 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
485 503 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
486 504 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
487 505 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
488 506 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
489 507 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
590 609 4.869861 TGTTTATCATGTCATGTGAGTCCG 59.130 41.667 12.54 0.00 0.00 4.79
669 688 3.756082 TGGCCCTTCTGGTTATGATTT 57.244 42.857 0.00 0.00 36.04 2.17
705 724 2.170166 CAGTGGCCTCCTTTTGCATTA 58.830 47.619 3.32 0.00 0.00 1.90
792 812 4.668576 TTTTGCGACATGCTTCTTCTAG 57.331 40.909 0.00 0.00 46.63 2.43
1035 1202 6.098982 CCCCTTGGGCTATACAATAGAGATAG 59.901 46.154 0.00 0.00 35.35 2.08
1166 1333 7.355101 TCATATAGAGGTAAGTTGGTCAGTCT 58.645 38.462 0.00 0.00 0.00 3.24
1303 1473 7.061557 GCAGTTTTCTAGAAGCATGTGATTTTC 59.938 37.037 5.12 0.00 0.00 2.29
1327 1497 7.639039 TCCACGCATAATTCTTCATATCAAAC 58.361 34.615 0.00 0.00 0.00 2.93
1332 1502 8.768019 CGCATAATTCTTCATATCAAACAGAGA 58.232 33.333 0.00 0.00 0.00 3.10
1339 1510 9.784531 TTCTTCATATCAAACAGAGAAGAAGTT 57.215 29.630 10.36 0.00 43.28 2.66
1409 1580 7.062956 CACATAGTCACTCGTTATGCAAGTTTA 59.937 37.037 0.00 0.00 0.00 2.01
1464 1898 8.372459 AGGTACTGATGAAGTTAATTACACACA 58.628 33.333 0.00 0.00 40.56 3.72
1476 1910 7.607991 AGTTAATTACACACAGAGGATTCCAAG 59.392 37.037 5.29 0.00 0.00 3.61
1505 1939 3.657956 TTTTTGGACGCTGCTTTGG 57.342 47.368 0.00 0.00 0.00 3.28
1506 1940 0.820871 TTTTTGGACGCTGCTTTGGT 59.179 45.000 0.00 0.00 0.00 3.67
1507 1941 0.102120 TTTTGGACGCTGCTTTGGTG 59.898 50.000 0.00 0.00 0.00 4.17
1508 1942 2.348605 TTTGGACGCTGCTTTGGTGC 62.349 55.000 0.00 0.00 0.00 5.01
1509 1943 4.043200 GGACGCTGCTTTGGTGCC 62.043 66.667 0.00 0.00 0.00 5.01
1510 1944 4.389576 GACGCTGCTTTGGTGCCG 62.390 66.667 0.00 0.00 0.00 5.69
1512 1946 3.047280 CGCTGCTTTGGTGCCGTA 61.047 61.111 0.00 0.00 0.00 4.02
1513 1947 2.612567 CGCTGCTTTGGTGCCGTAA 61.613 57.895 0.00 0.00 0.00 3.18
1514 1948 1.081442 GCTGCTTTGGTGCCGTAAC 60.081 57.895 0.00 0.00 0.00 2.50
1515 1949 1.515521 GCTGCTTTGGTGCCGTAACT 61.516 55.000 0.00 0.00 0.00 2.24
1516 1950 0.238289 CTGCTTTGGTGCCGTAACTG 59.762 55.000 0.00 0.00 0.00 3.16
1517 1951 1.081442 GCTTTGGTGCCGTAACTGC 60.081 57.895 0.00 0.00 0.00 4.40
1518 1952 1.791103 GCTTTGGTGCCGTAACTGCA 61.791 55.000 0.00 0.00 36.12 4.41
1523 1957 2.668212 TGCCGTAACTGCACCTGC 60.668 61.111 0.00 0.00 42.50 4.85
1533 1967 2.203337 GCACCTGCAGTTGGGTCA 60.203 61.111 13.63 0.00 41.59 4.02
1534 1968 2.555547 GCACCTGCAGTTGGGTCAC 61.556 63.158 13.63 0.00 41.59 3.67
1535 1969 1.149174 CACCTGCAGTTGGGTCACT 59.851 57.895 13.81 0.00 32.95 3.41
1536 1970 1.149174 ACCTGCAGTTGGGTCACTG 59.851 57.895 13.81 0.00 46.15 3.66
1537 1971 1.344953 ACCTGCAGTTGGGTCACTGA 61.345 55.000 13.81 0.00 46.29 3.41
1538 1972 0.886490 CCTGCAGTTGGGTCACTGAC 60.886 60.000 13.81 0.00 46.29 3.51
1539 1973 0.179048 CTGCAGTTGGGTCACTGACA 60.179 55.000 5.25 2.27 46.29 3.58
1540 1974 0.473755 TGCAGTTGGGTCACTGACAT 59.526 50.000 11.34 0.00 46.29 3.06
1541 1975 0.877071 GCAGTTGGGTCACTGACATG 59.123 55.000 11.34 0.00 46.29 3.21
1542 1976 1.815408 GCAGTTGGGTCACTGACATGT 60.815 52.381 11.34 0.00 46.29 3.21
1543 1977 1.875514 CAGTTGGGTCACTGACATGTG 59.124 52.381 1.15 0.00 46.29 3.21
1544 1978 1.202806 AGTTGGGTCACTGACATGTGG 60.203 52.381 1.15 0.00 38.40 4.17
1545 1979 0.110295 TTGGGTCACTGACATGTGGG 59.890 55.000 1.15 0.00 38.40 4.61
1546 1980 1.675641 GGGTCACTGACATGTGGGC 60.676 63.158 1.15 0.00 38.40 5.36
1547 1981 1.675641 GGTCACTGACATGTGGGCC 60.676 63.158 1.15 0.00 38.40 5.80
1548 1982 1.073025 GTCACTGACATGTGGGCCA 59.927 57.895 1.15 0.00 38.40 5.36
1549 1983 0.957395 GTCACTGACATGTGGGCCAG 60.957 60.000 6.40 6.93 38.40 4.85
1550 1984 2.034687 ACTGACATGTGGGCCAGC 59.965 61.111 6.40 2.28 0.00 4.85
1551 1985 2.353958 CTGACATGTGGGCCAGCT 59.646 61.111 6.40 0.00 0.00 4.24
1552 1986 1.200760 ACTGACATGTGGGCCAGCTA 61.201 55.000 6.40 0.00 0.00 3.32
1553 1987 0.182061 CTGACATGTGGGCCAGCTAT 59.818 55.000 6.40 0.00 0.00 2.97
1554 1988 0.181114 TGACATGTGGGCCAGCTATC 59.819 55.000 6.40 3.38 0.00 2.08
1555 1989 0.471617 GACATGTGGGCCAGCTATCT 59.528 55.000 6.40 0.00 0.00 1.98
1556 1990 0.182061 ACATGTGGGCCAGCTATCTG 59.818 55.000 6.40 0.67 40.02 2.90
1557 1991 0.182061 CATGTGGGCCAGCTATCTGT 59.818 55.000 6.40 0.00 38.66 3.41
1558 1992 0.921896 ATGTGGGCCAGCTATCTGTT 59.078 50.000 6.40 0.00 38.66 3.16
1559 1993 1.578897 TGTGGGCCAGCTATCTGTTA 58.421 50.000 6.40 0.00 38.66 2.41
1560 1994 1.486310 TGTGGGCCAGCTATCTGTTAG 59.514 52.381 6.40 0.00 38.66 2.34
1561 1995 1.131638 TGGGCCAGCTATCTGTTAGG 58.868 55.000 0.00 0.00 38.66 2.69
1562 1996 1.343985 TGGGCCAGCTATCTGTTAGGA 60.344 52.381 0.00 0.00 38.66 2.94
1563 1997 1.070914 GGGCCAGCTATCTGTTAGGAC 59.929 57.143 4.39 0.00 38.66 3.85
1564 1998 1.070914 GGCCAGCTATCTGTTAGGACC 59.929 57.143 0.00 0.00 38.66 4.46
1565 1999 1.762957 GCCAGCTATCTGTTAGGACCA 59.237 52.381 0.00 0.00 38.66 4.02
1566 2000 2.483889 GCCAGCTATCTGTTAGGACCAC 60.484 54.545 0.00 0.00 38.66 4.16
1567 2001 2.766263 CCAGCTATCTGTTAGGACCACA 59.234 50.000 0.00 0.00 38.66 4.17
1568 2002 3.389329 CCAGCTATCTGTTAGGACCACAT 59.611 47.826 0.00 0.00 38.66 3.21
1569 2003 4.375272 CAGCTATCTGTTAGGACCACATG 58.625 47.826 0.00 0.00 35.61 3.21
1570 2004 4.033709 AGCTATCTGTTAGGACCACATGT 58.966 43.478 0.00 0.00 0.00 3.21
1571 2005 4.100189 AGCTATCTGTTAGGACCACATGTC 59.900 45.833 0.00 0.00 43.67 3.06
1572 2006 4.141937 GCTATCTGTTAGGACCACATGTCA 60.142 45.833 0.00 0.00 46.38 3.58
1573 2007 3.961480 TCTGTTAGGACCACATGTCAG 57.039 47.619 0.00 0.00 46.38 3.51
1574 2008 3.239449 TCTGTTAGGACCACATGTCAGT 58.761 45.455 0.00 0.00 46.38 3.41
1575 2009 3.006859 TCTGTTAGGACCACATGTCAGTG 59.993 47.826 0.00 0.00 46.38 3.66
1576 2010 2.969262 TGTTAGGACCACATGTCAGTGA 59.031 45.455 0.00 0.00 46.38 3.41
1577 2011 3.244078 TGTTAGGACCACATGTCAGTGAC 60.244 47.826 16.68 16.68 46.38 3.67
1578 2012 0.687354 AGGACCACATGTCAGTGACC 59.313 55.000 20.43 2.41 46.38 4.02
1579 2013 0.687354 GGACCACATGTCAGTGACCT 59.313 55.000 20.43 8.09 46.38 3.85
1580 2014 1.899814 GGACCACATGTCAGTGACCTA 59.100 52.381 20.43 3.13 46.38 3.08
1581 2015 2.301870 GGACCACATGTCAGTGACCTAA 59.698 50.000 20.43 2.34 46.38 2.69
1582 2016 3.326747 GACCACATGTCAGTGACCTAAC 58.673 50.000 20.43 0.00 43.85 2.34
1583 2017 2.972713 ACCACATGTCAGTGACCTAACT 59.027 45.455 20.43 0.00 42.05 2.24
1585 2019 2.738846 CACATGTCAGTGACCTAACTGC 59.261 50.000 20.43 0.00 45.93 4.40
1586 2020 2.368548 ACATGTCAGTGACCTAACTGCA 59.631 45.455 20.43 0.00 45.93 4.41
1587 2021 2.820059 TGTCAGTGACCTAACTGCAG 57.180 50.000 20.43 13.48 45.93 4.41
1588 2022 1.344438 TGTCAGTGACCTAACTGCAGG 59.656 52.381 20.43 2.94 45.93 4.85
1601 2035 2.668212 GCAGGTGCAGTTACGGCA 60.668 61.111 6.01 6.01 41.59 5.69
1607 2041 2.912986 TGCAGTTACGGCACTGAAG 58.087 52.632 17.81 0.00 46.29 3.02
1608 2042 1.227999 TGCAGTTACGGCACTGAAGC 61.228 55.000 17.81 5.53 46.29 3.86
1609 2043 0.951040 GCAGTTACGGCACTGAAGCT 60.951 55.000 17.81 0.00 46.29 3.74
1610 2044 1.071605 CAGTTACGGCACTGAAGCTC 58.928 55.000 10.01 0.00 46.29 4.09
1611 2045 0.679505 AGTTACGGCACTGAAGCTCA 59.320 50.000 0.00 0.00 34.17 4.26
1722 2156 1.377202 GGAACCTGGCTGCGATGAA 60.377 57.895 0.00 0.00 0.00 2.57
1942 2376 7.905265 ACTCAATGATAGATCTGGGAATACTG 58.095 38.462 5.18 0.00 0.00 2.74
1955 2389 3.263425 GGGAATACTGAGGGAAACACTGA 59.737 47.826 0.00 0.00 0.00 3.41
1963 2397 3.244215 TGAGGGAAACACTGAGCAACTAG 60.244 47.826 0.00 0.00 0.00 2.57
2091 2525 0.034337 TACGGGACTGTGTGAAAGCC 59.966 55.000 0.00 0.00 0.00 4.35
2145 2579 1.078143 AGGAGGGAAGCGTTGCATC 60.078 57.895 0.00 0.00 0.00 3.91
2193 2627 4.790962 CAGGGCCGCAGTGAGCAT 62.791 66.667 0.00 0.00 46.13 3.79
2196 2630 4.487412 GGCCGCAGTGAGCATTGC 62.487 66.667 7.78 7.78 46.13 3.56
2247 2681 3.056328 GAAGGGTGCGTGAAGGGC 61.056 66.667 0.00 0.00 0.00 5.19
2415 2849 1.752694 CGCAAAATGGGGGACGGAT 60.753 57.895 0.00 0.00 0.00 4.18
2469 2903 4.269523 ACGCCTGAAGCCTTGCCA 62.270 61.111 0.00 0.00 38.78 4.92
2517 2951 3.493176 CCAAGAAGCCCAAAAAGGAAGTG 60.493 47.826 0.00 0.00 41.22 3.16
2559 2993 0.833287 AGTTGACTGTCACCACTGCT 59.167 50.000 10.56 0.00 0.00 4.24
2567 3001 1.009389 GTCACCACTGCTGCGTCTAC 61.009 60.000 0.00 0.00 0.00 2.59
2625 3059 3.270027 TCATATGCCTTCAAACCGTGAG 58.730 45.455 0.00 0.00 37.61 3.51
2703 3137 3.866703 TTACCACTGTCCATGAAACCA 57.133 42.857 0.00 0.00 0.00 3.67
2761 3195 2.509561 GGACGGAGAAGGAAGCGC 60.510 66.667 0.00 0.00 0.00 5.92
2796 3233 4.989168 ACGACGCTGAATCTTTAGAAAACT 59.011 37.500 0.00 0.00 0.00 2.66
2815 3252 0.478072 TTCCATGGTGCAGGTGACTT 59.522 50.000 12.58 0.00 40.21 3.01
2860 3299 3.119602 TCTCTGATTACTGTTTCGGACCG 60.120 47.826 7.84 7.84 0.00 4.79
2880 3319 3.438360 CGAAAACATCCATGGCTTTAGC 58.562 45.455 6.96 0.00 41.14 3.09
2882 3321 4.427312 GAAAACATCCATGGCTTTAGCAG 58.573 43.478 6.96 0.00 44.36 4.24
2883 3322 3.370840 AACATCCATGGCTTTAGCAGA 57.629 42.857 6.96 0.00 44.36 4.26
2884 3323 2.648059 ACATCCATGGCTTTAGCAGAC 58.352 47.619 6.96 0.00 44.36 3.51
2887 3326 0.392998 CCATGGCTTTAGCAGACGGT 60.393 55.000 0.00 0.00 44.36 4.83
2892 3331 1.351153 GCTTTAGCAGACGGTGACTC 58.649 55.000 0.00 0.00 41.59 3.36
2915 3356 3.568007 GTCCATGGTGAAAGTTGTTGCTA 59.432 43.478 12.58 0.00 0.00 3.49
2945 3392 2.616842 TCGCCTTTTTCTGTTTGGTCTC 59.383 45.455 0.00 0.00 0.00 3.36
3014 3467 0.303493 CGTCGTTGTGTGGAAACTGG 59.697 55.000 0.00 0.00 0.00 4.00
3015 3468 1.658994 GTCGTTGTGTGGAAACTGGA 58.341 50.000 0.00 0.00 0.00 3.86
3069 3525 3.811497 CGATTGGCTAGAAATCTGCATCA 59.189 43.478 13.59 0.00 32.83 3.07
3089 3545 3.617540 ATGCAATGACGTGTTTTCGAA 57.382 38.095 0.00 0.00 34.70 3.71
3090 3546 3.617540 TGCAATGACGTGTTTTCGAAT 57.382 38.095 0.00 0.00 34.70 3.34
3091 3547 3.295785 TGCAATGACGTGTTTTCGAATG 58.704 40.909 0.00 0.00 34.70 2.67
3092 3548 3.002759 TGCAATGACGTGTTTTCGAATGA 59.997 39.130 0.00 0.00 34.70 2.57
3093 3549 4.158384 GCAATGACGTGTTTTCGAATGAT 58.842 39.130 0.00 0.00 34.70 2.45
3094 3550 4.260656 GCAATGACGTGTTTTCGAATGATC 59.739 41.667 0.00 0.00 34.70 2.92
3095 3551 4.600012 ATGACGTGTTTTCGAATGATCC 57.400 40.909 0.00 0.00 34.70 3.36
3096 3552 3.659786 TGACGTGTTTTCGAATGATCCT 58.340 40.909 0.00 0.00 34.70 3.24
3097 3553 3.431912 TGACGTGTTTTCGAATGATCCTG 59.568 43.478 0.00 0.00 34.70 3.86
3098 3554 2.159627 ACGTGTTTTCGAATGATCCTGC 59.840 45.455 0.00 0.00 34.70 4.85
3099 3555 2.416547 CGTGTTTTCGAATGATCCTGCT 59.583 45.455 0.00 0.00 0.00 4.24
3100 3556 3.725895 CGTGTTTTCGAATGATCCTGCTG 60.726 47.826 0.00 0.00 0.00 4.41
3101 3557 3.436704 GTGTTTTCGAATGATCCTGCTGA 59.563 43.478 0.00 0.00 0.00 4.26
3102 3558 3.436704 TGTTTTCGAATGATCCTGCTGAC 59.563 43.478 0.00 0.00 0.00 3.51
3103 3559 3.333029 TTTCGAATGATCCTGCTGACA 57.667 42.857 0.00 0.00 0.00 3.58
3104 3560 3.333029 TTCGAATGATCCTGCTGACAA 57.667 42.857 0.00 0.00 0.00 3.18
3105 3561 2.897436 TCGAATGATCCTGCTGACAAG 58.103 47.619 0.00 0.00 0.00 3.16
3106 3562 1.938577 CGAATGATCCTGCTGACAAGG 59.061 52.381 0.00 0.00 0.00 3.61
3107 3563 2.295885 GAATGATCCTGCTGACAAGGG 58.704 52.381 0.00 0.00 0.00 3.95
3108 3564 1.588239 ATGATCCTGCTGACAAGGGA 58.412 50.000 0.00 0.00 0.00 4.20
3109 3565 0.907486 TGATCCTGCTGACAAGGGAG 59.093 55.000 0.00 0.00 0.00 4.30
3110 3566 0.179936 GATCCTGCTGACAAGGGAGG 59.820 60.000 0.00 0.00 42.52 4.30
3111 3567 0.548682 ATCCTGCTGACAAGGGAGGT 60.549 55.000 2.75 0.00 41.95 3.85
3112 3568 1.194781 TCCTGCTGACAAGGGAGGTC 61.195 60.000 2.75 0.00 41.95 3.85
3113 3569 1.197430 CCTGCTGACAAGGGAGGTCT 61.197 60.000 0.00 0.00 37.49 3.85
3153 3609 3.767230 CGTTGCCGAGTGCTGACG 61.767 66.667 0.00 0.00 41.30 4.35
3154 3610 2.355837 GTTGCCGAGTGCTGACGA 60.356 61.111 0.00 0.00 42.00 4.20
3155 3611 1.738099 GTTGCCGAGTGCTGACGAT 60.738 57.895 0.00 0.00 42.00 3.73
3156 3612 1.737735 TTGCCGAGTGCTGACGATG 60.738 57.895 0.00 0.00 42.00 3.84
3157 3613 2.887568 GCCGAGTGCTGACGATGG 60.888 66.667 0.00 0.00 36.87 3.51
3158 3614 2.202797 CCGAGTGCTGACGATGGG 60.203 66.667 0.00 0.00 0.00 4.00
3159 3615 2.202797 CGAGTGCTGACGATGGGG 60.203 66.667 0.00 0.00 0.00 4.96
3160 3616 2.512515 GAGTGCTGACGATGGGGC 60.513 66.667 0.00 0.00 0.00 5.80
3161 3617 3.005539 AGTGCTGACGATGGGGCT 61.006 61.111 0.00 0.00 0.00 5.19
3162 3618 1.676678 GAGTGCTGACGATGGGGCTA 61.677 60.000 0.00 0.00 0.00 3.93
3163 3619 1.050988 AGTGCTGACGATGGGGCTAT 61.051 55.000 0.00 0.00 0.00 2.97
3164 3620 0.179045 GTGCTGACGATGGGGCTATT 60.179 55.000 0.00 0.00 0.00 1.73
3165 3621 0.546122 TGCTGACGATGGGGCTATTT 59.454 50.000 0.00 0.00 0.00 1.40
3166 3622 1.064758 TGCTGACGATGGGGCTATTTT 60.065 47.619 0.00 0.00 0.00 1.82
3167 3623 2.171659 TGCTGACGATGGGGCTATTTTA 59.828 45.455 0.00 0.00 0.00 1.52
3168 3624 2.808543 GCTGACGATGGGGCTATTTTAG 59.191 50.000 0.00 0.00 0.00 1.85
3169 3625 3.403038 CTGACGATGGGGCTATTTTAGG 58.597 50.000 0.00 0.00 0.00 2.69
3187 3643 1.005394 GCCATGGCCAATGCATAGC 60.005 57.895 27.24 12.14 40.13 2.97
3191 3647 4.585070 GGCCAATGCATAGCCTCA 57.415 55.556 26.05 0.00 43.62 3.86
3192 3648 2.338381 GGCCAATGCATAGCCTCAG 58.662 57.895 26.05 2.65 43.62 3.35
3193 3649 1.177256 GGCCAATGCATAGCCTCAGG 61.177 60.000 26.05 10.45 43.62 3.86
3194 3650 1.177256 GCCAATGCATAGCCTCAGGG 61.177 60.000 0.00 0.00 37.47 4.45
3195 3651 0.184451 CCAATGCATAGCCTCAGGGT 59.816 55.000 0.00 0.00 37.19 4.34
3196 3652 1.315690 CAATGCATAGCCTCAGGGTG 58.684 55.000 5.37 0.00 34.28 4.61
3197 3653 1.134007 CAATGCATAGCCTCAGGGTGA 60.134 52.381 5.37 0.00 34.28 4.02
3198 3654 1.442773 ATGCATAGCCTCAGGGTGAT 58.557 50.000 5.37 0.00 34.28 3.06
3199 3655 0.471191 TGCATAGCCTCAGGGTGATG 59.529 55.000 5.37 6.81 34.28 3.07
3200 3656 0.888285 GCATAGCCTCAGGGTGATGC 60.888 60.000 16.57 16.57 41.72 3.91
3201 3657 0.250640 CATAGCCTCAGGGTGATGCC 60.251 60.000 5.37 0.00 38.54 4.40
3202 3658 0.401105 ATAGCCTCAGGGTGATGCCT 60.401 55.000 5.37 0.00 38.54 4.75
3203 3659 0.621571 TAGCCTCAGGGTGATGCCTT 60.622 55.000 5.37 0.00 38.54 4.35
3204 3660 1.000396 GCCTCAGGGTGATGCCTTT 60.000 57.895 0.00 0.00 32.86 3.11
3205 3661 0.255890 GCCTCAGGGTGATGCCTTTA 59.744 55.000 0.00 0.00 32.86 1.85
3206 3662 1.340991 GCCTCAGGGTGATGCCTTTAA 60.341 52.381 0.00 0.00 32.86 1.52
3207 3663 2.883888 GCCTCAGGGTGATGCCTTTAAA 60.884 50.000 0.00 0.00 32.86 1.52
3208 3664 3.635591 CCTCAGGGTGATGCCTTTAAAT 58.364 45.455 0.00 0.00 37.43 1.40
3209 3665 4.026052 CCTCAGGGTGATGCCTTTAAATT 58.974 43.478 0.00 0.00 37.43 1.82
3210 3666 4.142093 CCTCAGGGTGATGCCTTTAAATTG 60.142 45.833 0.00 0.00 37.43 2.32
3211 3667 3.195396 TCAGGGTGATGCCTTTAAATTGC 59.805 43.478 3.55 3.55 37.43 3.56
3212 3668 2.501316 AGGGTGATGCCTTTAAATTGCC 59.499 45.455 7.23 0.00 37.43 4.52
3213 3669 2.501316 GGGTGATGCCTTTAAATTGCCT 59.499 45.455 7.23 0.00 37.43 4.75
3214 3670 3.524541 GGTGATGCCTTTAAATTGCCTG 58.475 45.455 7.23 0.00 0.00 4.85
3215 3671 2.931969 GTGATGCCTTTAAATTGCCTGC 59.068 45.455 7.23 0.00 0.00 4.85
3216 3672 2.833338 TGATGCCTTTAAATTGCCTGCT 59.167 40.909 7.23 0.00 0.00 4.24
3217 3673 3.119029 TGATGCCTTTAAATTGCCTGCTC 60.119 43.478 7.23 1.86 0.00 4.26
3218 3674 2.246469 TGCCTTTAAATTGCCTGCTCA 58.754 42.857 7.23 0.00 0.00 4.26
3219 3675 2.029110 TGCCTTTAAATTGCCTGCTCAC 60.029 45.455 7.23 0.00 0.00 3.51
3220 3676 2.867429 CCTTTAAATTGCCTGCTCACG 58.133 47.619 0.00 0.00 0.00 4.35
3221 3677 2.228822 CCTTTAAATTGCCTGCTCACGT 59.771 45.455 0.00 0.00 0.00 4.49
3222 3678 2.987413 TTAAATTGCCTGCTCACGTG 57.013 45.000 9.94 9.94 0.00 4.49
3223 3679 1.890876 TAAATTGCCTGCTCACGTGT 58.109 45.000 16.51 0.00 0.00 4.49
3224 3680 0.311790 AAATTGCCTGCTCACGTGTG 59.688 50.000 16.51 14.71 0.00 3.82
3225 3681 0.819259 AATTGCCTGCTCACGTGTGT 60.819 50.000 16.51 0.00 0.00 3.72
3226 3682 0.034756 ATTGCCTGCTCACGTGTGTA 59.965 50.000 16.51 11.92 0.00 2.90
3227 3683 0.034756 TTGCCTGCTCACGTGTGTAT 59.965 50.000 16.51 0.00 0.00 2.29
3228 3684 0.892063 TGCCTGCTCACGTGTGTATA 59.108 50.000 16.51 3.60 0.00 1.47
3229 3685 1.273886 TGCCTGCTCACGTGTGTATAA 59.726 47.619 16.51 0.00 0.00 0.98
3230 3686 2.093711 TGCCTGCTCACGTGTGTATAAT 60.094 45.455 16.51 0.00 0.00 1.28
3231 3687 2.936498 GCCTGCTCACGTGTGTATAATT 59.064 45.455 16.51 0.00 0.00 1.40
3232 3688 4.116961 GCCTGCTCACGTGTGTATAATTA 58.883 43.478 16.51 0.00 0.00 1.40
3233 3689 4.750098 GCCTGCTCACGTGTGTATAATTAT 59.250 41.667 16.51 2.97 0.00 1.28
3234 3690 5.236478 GCCTGCTCACGTGTGTATAATTATT 59.764 40.000 16.51 0.00 0.00 1.40
3235 3691 6.422701 GCCTGCTCACGTGTGTATAATTATTA 59.577 38.462 16.51 0.00 0.00 0.98
3236 3692 7.117812 GCCTGCTCACGTGTGTATAATTATTAT 59.882 37.037 16.51 2.85 0.00 1.28
3237 3693 8.435430 CCTGCTCACGTGTGTATAATTATTATG 58.565 37.037 16.51 0.00 0.00 1.90
3238 3694 8.305441 TGCTCACGTGTGTATAATTATTATGG 57.695 34.615 16.51 0.00 0.00 2.74
3239 3695 7.095397 TGCTCACGTGTGTATAATTATTATGGC 60.095 37.037 16.51 2.07 0.00 4.40
3240 3696 7.095397 GCTCACGTGTGTATAATTATTATGGCA 60.095 37.037 16.51 0.00 0.00 4.92
3241 3697 8.840833 TCACGTGTGTATAATTATTATGGCAT 57.159 30.769 16.51 4.88 0.00 4.40
3242 3698 8.931775 TCACGTGTGTATAATTATTATGGCATC 58.068 33.333 16.51 4.58 0.00 3.91
3243 3699 8.935844 CACGTGTGTATAATTATTATGGCATCT 58.064 33.333 7.58 0.00 0.00 2.90
3254 3710 5.964958 ATTATGGCATCTAAATTGTCCGG 57.035 39.130 1.65 0.00 0.00 5.14
3255 3711 2.799126 TGGCATCTAAATTGTCCGGT 57.201 45.000 0.00 0.00 0.00 5.28
3256 3712 2.639065 TGGCATCTAAATTGTCCGGTC 58.361 47.619 0.00 0.00 0.00 4.79
3257 3713 2.026729 TGGCATCTAAATTGTCCGGTCA 60.027 45.455 0.00 0.00 0.00 4.02
3258 3714 3.214328 GGCATCTAAATTGTCCGGTCAT 58.786 45.455 1.21 0.00 0.00 3.06
3259 3715 3.003689 GGCATCTAAATTGTCCGGTCATG 59.996 47.826 1.21 0.00 0.00 3.07
3260 3716 3.627577 GCATCTAAATTGTCCGGTCATGT 59.372 43.478 1.21 0.00 0.00 3.21
3261 3717 4.496341 GCATCTAAATTGTCCGGTCATGTG 60.496 45.833 1.21 0.00 0.00 3.21
3262 3718 3.006940 TCTAAATTGTCCGGTCATGTGC 58.993 45.455 1.21 0.00 0.00 4.57
3263 3719 1.614996 AAATTGTCCGGTCATGTGCA 58.385 45.000 1.21 0.00 0.00 4.57
3264 3720 1.838112 AATTGTCCGGTCATGTGCAT 58.162 45.000 1.21 0.00 0.00 3.96
3336 3792 2.612095 TTTGTCCGTTTGGGTCGGCT 62.612 55.000 0.00 0.00 46.49 5.52
3373 3829 5.947663 TCATCCTCTTTTAGTTTTGGGTCA 58.052 37.500 0.00 0.00 0.00 4.02
3412 3868 1.173043 GACCCATTTTCATGACCGCA 58.827 50.000 0.00 0.00 31.07 5.69
3449 3906 1.289109 CGTCGCCCTGATTTTGACGT 61.289 55.000 5.02 0.00 45.23 4.34
3454 3911 1.611491 GCCCTGATTTTGACGTTCCAA 59.389 47.619 0.00 0.00 0.00 3.53
3496 3953 2.513395 TGGTTTTGGCGCTCCAGA 59.487 55.556 7.64 0.00 44.53 3.86
3779 4304 2.359975 CCTCTCCCGCGGCTTTTT 60.360 61.111 22.85 0.00 0.00 1.94
3810 4335 2.697761 CGTCGTGTCCATCGGAGGT 61.698 63.158 0.00 0.00 29.39 3.85
3819 4344 3.706373 ATCGGAGGTGGCAGCGTT 61.706 61.111 11.51 0.00 0.00 4.84
3831 4356 1.078918 CAGCGTTGCCTCTCCATCA 60.079 57.895 0.00 0.00 0.00 3.07
4061 4586 1.817099 GCAGCTTGCTGACGCCTAT 60.817 57.895 24.67 0.00 40.96 2.57
4074 4599 1.200716 ACGCCTATCTTCAAACGTCGA 59.799 47.619 0.00 0.00 0.00 4.20
4135 4661 9.635520 CGAGTAGTGGTCTTTTTCTTTTATCTA 57.364 33.333 0.00 0.00 0.00 1.98
4339 4868 3.781307 CGGGAATGGGTCGGCAGA 61.781 66.667 0.00 0.00 0.00 4.26
4439 4968 2.267961 GGACGAAATGGGTCGCCT 59.732 61.111 0.00 0.00 45.00 5.52
4486 5015 8.990163 AAAAATAAGACCAACTCAAGGACTAA 57.010 30.769 0.00 0.00 31.02 2.24
4487 5016 7.981102 AAATAAGACCAACTCAAGGACTAAC 57.019 36.000 0.00 0.00 31.02 2.34
4488 5017 4.353383 AAGACCAACTCAAGGACTAACC 57.647 45.455 0.00 0.00 39.35 2.85
4489 5018 2.638363 AGACCAACTCAAGGACTAACCC 59.362 50.000 0.00 0.00 40.05 4.11
4490 5019 2.638363 GACCAACTCAAGGACTAACCCT 59.362 50.000 0.00 0.00 40.05 4.34
4491 5020 3.053826 ACCAACTCAAGGACTAACCCTT 58.946 45.455 0.00 0.00 46.91 3.95
4526 5055 5.801350 TGAGAGAAAATTTATGAGCACCG 57.199 39.130 0.00 0.00 0.00 4.94
4527 5056 4.094887 TGAGAGAAAATTTATGAGCACCGC 59.905 41.667 0.00 0.00 0.00 5.68
4528 5057 3.063997 AGAGAAAATTTATGAGCACCGCG 59.936 43.478 0.00 0.00 0.00 6.46
4529 5058 1.846175 GAAAATTTATGAGCACCGCGC 59.154 47.619 0.00 0.00 42.91 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.093711 ACTTGCACACATATAGCACGGA 60.094 45.455 0.00 0.00 38.11 4.69
2 3 4.026558 CAGTACTTGCACACATATAGCACG 60.027 45.833 0.00 0.00 38.11 5.34
3 4 5.395325 CAGTACTTGCACACATATAGCAC 57.605 43.478 0.00 0.00 38.11 4.40
19 20 9.698309 GTGATATGTGAACAATATAGCAGTACT 57.302 33.333 0.00 0.00 0.00 2.73
20 21 9.476202 TGTGATATGTGAACAATATAGCAGTAC 57.524 33.333 0.00 0.00 0.00 2.73
22 23 8.996271 CATGTGATATGTGAACAATATAGCAGT 58.004 33.333 0.00 0.00 0.00 4.40
23 24 9.211485 TCATGTGATATGTGAACAATATAGCAG 57.789 33.333 0.00 0.00 0.00 4.24
24 25 9.211485 CTCATGTGATATGTGAACAATATAGCA 57.789 33.333 0.00 0.00 0.00 3.49
25 26 9.212641 ACTCATGTGATATGTGAACAATATAGC 57.787 33.333 0.94 0.00 0.00 2.97
29 30 8.676401 CCAAACTCATGTGATATGTGAACAATA 58.324 33.333 0.94 0.00 0.00 1.90
30 31 7.394077 TCCAAACTCATGTGATATGTGAACAAT 59.606 33.333 0.94 0.00 0.00 2.71
31 32 6.714356 TCCAAACTCATGTGATATGTGAACAA 59.286 34.615 0.94 0.00 0.00 2.83
32 33 6.149308 GTCCAAACTCATGTGATATGTGAACA 59.851 38.462 0.94 0.00 0.00 3.18
33 34 6.149308 TGTCCAAACTCATGTGATATGTGAAC 59.851 38.462 0.94 0.00 0.00 3.18
34 35 6.237154 TGTCCAAACTCATGTGATATGTGAA 58.763 36.000 0.94 0.00 0.00 3.18
35 36 5.803552 TGTCCAAACTCATGTGATATGTGA 58.196 37.500 0.94 0.00 0.00 3.58
36 37 6.688637 ATGTCCAAACTCATGTGATATGTG 57.311 37.500 0.94 0.00 0.00 3.21
37 38 6.319658 GGAATGTCCAAACTCATGTGATATGT 59.680 38.462 0.94 0.00 36.28 2.29
38 39 6.512253 CGGAATGTCCAAACTCATGTGATATG 60.512 42.308 0.94 0.00 35.91 1.78
39 40 5.528690 CGGAATGTCCAAACTCATGTGATAT 59.471 40.000 0.94 0.00 35.91 1.63
40 41 4.875536 CGGAATGTCCAAACTCATGTGATA 59.124 41.667 0.94 0.00 35.91 2.15
41 42 3.691118 CGGAATGTCCAAACTCATGTGAT 59.309 43.478 0.94 0.00 35.91 3.06
42 43 3.073678 CGGAATGTCCAAACTCATGTGA 58.926 45.455 0.94 0.00 35.91 3.58
43 44 3.073678 TCGGAATGTCCAAACTCATGTG 58.926 45.455 0.00 0.00 35.91 3.21
44 45 3.074412 GTCGGAATGTCCAAACTCATGT 58.926 45.455 0.00 0.00 35.91 3.21
45 46 3.073678 TGTCGGAATGTCCAAACTCATG 58.926 45.455 0.00 0.00 35.91 3.07
46 47 3.074412 GTGTCGGAATGTCCAAACTCAT 58.926 45.455 0.00 0.00 35.91 2.90
47 48 2.489971 GTGTCGGAATGTCCAAACTCA 58.510 47.619 0.00 0.00 35.91 3.41
48 49 1.459592 CGTGTCGGAATGTCCAAACTC 59.540 52.381 0.00 0.00 35.91 3.01
49 50 1.508632 CGTGTCGGAATGTCCAAACT 58.491 50.000 0.00 0.00 35.91 2.66
62 63 2.430921 GCACTCTGGACCGTGTCG 60.431 66.667 0.75 0.00 32.65 4.35
63 64 2.430921 CGCACTCTGGACCGTGTC 60.431 66.667 0.75 0.00 33.78 3.67
64 65 3.208884 GACGCACTCTGGACCGTGT 62.209 63.158 0.00 0.00 33.63 4.49
65 66 2.430921 GACGCACTCTGGACCGTG 60.431 66.667 0.00 0.00 33.63 4.94
66 67 2.597805 AGACGCACTCTGGACCGT 60.598 61.111 0.00 0.00 36.53 4.83
67 68 2.126307 CAGACGCACTCTGGACCG 60.126 66.667 1.10 0.00 42.69 4.79
72 73 2.440539 ACTTAACCAGACGCACTCTG 57.559 50.000 1.97 1.97 45.63 3.35
73 74 2.548067 CCAACTTAACCAGACGCACTCT 60.548 50.000 0.00 0.00 0.00 3.24
74 75 1.798813 CCAACTTAACCAGACGCACTC 59.201 52.381 0.00 0.00 0.00 3.51
75 76 1.414919 TCCAACTTAACCAGACGCACT 59.585 47.619 0.00 0.00 0.00 4.40
76 77 1.529865 GTCCAACTTAACCAGACGCAC 59.470 52.381 0.00 0.00 0.00 5.34
77 78 1.870580 CGTCCAACTTAACCAGACGCA 60.871 52.381 0.00 0.00 43.07 5.24
78 79 0.788391 CGTCCAACTTAACCAGACGC 59.212 55.000 0.00 0.00 43.07 5.19
80 81 3.582780 CCTACGTCCAACTTAACCAGAC 58.417 50.000 0.00 0.00 0.00 3.51
81 82 2.564062 CCCTACGTCCAACTTAACCAGA 59.436 50.000 0.00 0.00 0.00 3.86
82 83 2.301009 ACCCTACGTCCAACTTAACCAG 59.699 50.000 0.00 0.00 0.00 4.00
83 84 2.299867 GACCCTACGTCCAACTTAACCA 59.700 50.000 0.00 0.00 35.23 3.67
84 85 2.299867 TGACCCTACGTCCAACTTAACC 59.700 50.000 0.00 0.00 41.18 2.85
85 86 3.582780 CTGACCCTACGTCCAACTTAAC 58.417 50.000 0.00 0.00 41.18 2.01
86 87 2.564062 CCTGACCCTACGTCCAACTTAA 59.436 50.000 0.00 0.00 41.18 1.85
87 88 2.173519 CCTGACCCTACGTCCAACTTA 58.826 52.381 0.00 0.00 41.18 2.24
88 89 0.974383 CCTGACCCTACGTCCAACTT 59.026 55.000 0.00 0.00 41.18 2.66
89 90 0.178941 ACCTGACCCTACGTCCAACT 60.179 55.000 0.00 0.00 41.18 3.16
90 91 0.245813 GACCTGACCCTACGTCCAAC 59.754 60.000 0.00 0.00 41.18 3.77
91 92 1.246056 CGACCTGACCCTACGTCCAA 61.246 60.000 0.00 0.00 41.18 3.53
92 93 1.676635 CGACCTGACCCTACGTCCA 60.677 63.158 0.00 0.00 41.18 4.02
93 94 2.413142 CCGACCTGACCCTACGTCC 61.413 68.421 0.00 0.00 41.18 4.79
94 95 1.377725 TCCGACCTGACCCTACGTC 60.378 63.158 0.00 0.00 42.33 4.34
95 96 1.676967 GTCCGACCTGACCCTACGT 60.677 63.158 0.00 0.00 0.00 3.57
96 97 1.378250 AGTCCGACCTGACCCTACG 60.378 63.158 0.00 0.00 35.83 3.51
97 98 0.611340 ACAGTCCGACCTGACCCTAC 60.611 60.000 8.09 0.00 35.83 3.18
98 99 0.323178 GACAGTCCGACCTGACCCTA 60.323 60.000 8.09 0.00 35.83 3.53
99 100 1.606889 GACAGTCCGACCTGACCCT 60.607 63.158 8.09 0.00 35.83 4.34
100 101 0.323178 TAGACAGTCCGACCTGACCC 60.323 60.000 8.09 0.00 35.83 4.46
101 102 1.201880 GTTAGACAGTCCGACCTGACC 59.798 57.143 8.09 1.00 35.83 4.02
102 103 2.161030 AGTTAGACAGTCCGACCTGAC 58.839 52.381 8.09 2.69 36.30 3.51
103 104 2.557056 CAAGTTAGACAGTCCGACCTGA 59.443 50.000 8.09 0.00 36.30 3.86
104 105 2.352814 CCAAGTTAGACAGTCCGACCTG 60.353 54.545 0.00 0.00 38.45 4.00
118 119 2.192664 TGCCGAAATCTGCCAAGTTA 57.807 45.000 0.00 0.00 0.00 2.24
151 157 1.341383 GGTGAAGCAGGGACCATCATT 60.341 52.381 0.00 0.00 0.00 2.57
158 164 2.190488 CTGGGAGGTGAAGCAGGGAC 62.190 65.000 0.00 0.00 0.00 4.46
169 175 0.494095 AGAAGAAGGGACTGGGAGGT 59.506 55.000 0.00 0.00 40.86 3.85
201 207 2.569853 TGGGAATTCTCAGGCGTAAAGA 59.430 45.455 3.16 0.00 0.00 2.52
208 214 2.493675 GGAACTTTGGGAATTCTCAGGC 59.506 50.000 8.30 0.00 0.00 4.85
259 266 6.220881 TCCTCTATGAGCTCCCTATACTTT 57.779 41.667 12.15 0.00 0.00 2.66
270 277 3.196685 GTGACTTGGTTCCTCTATGAGCT 59.803 47.826 0.00 0.00 0.00 4.09
285 292 3.125316 GCTATTGAAACCGAGGTGACTTG 59.875 47.826 0.00 0.00 44.43 3.16
342 349 2.692709 TCACCATGAACCCCACAAAT 57.307 45.000 0.00 0.00 0.00 2.32
347 354 2.798184 TGGATCACCATGAACCCCA 58.202 52.632 0.00 0.00 38.42 4.96
385 403 2.128507 CGGAGGGAGTAGGAGCCAC 61.129 68.421 0.00 0.00 0.00 5.01
395 413 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
396 414 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
397 415 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
398 416 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
399 417 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
400 418 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
401 419 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
402 420 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
438 456 9.850198 ACCCAACTTTGTATTAACTTTGTACTA 57.150 29.630 0.00 0.00 0.00 1.82
439 457 8.756486 ACCCAACTTTGTATTAACTTTGTACT 57.244 30.769 0.00 0.00 0.00 2.73
440 458 8.623030 TGACCCAACTTTGTATTAACTTTGTAC 58.377 33.333 0.00 0.00 0.00 2.90
441 459 8.749026 TGACCCAACTTTGTATTAACTTTGTA 57.251 30.769 0.00 0.00 0.00 2.41
442 460 7.648039 TGACCCAACTTTGTATTAACTTTGT 57.352 32.000 0.00 0.00 0.00 2.83
443 461 8.576442 AGATGACCCAACTTTGTATTAACTTTG 58.424 33.333 0.00 0.00 0.00 2.77
444 462 8.706322 AGATGACCCAACTTTGTATTAACTTT 57.294 30.769 0.00 0.00 0.00 2.66
445 463 9.975218 ATAGATGACCCAACTTTGTATTAACTT 57.025 29.630 0.00 0.00 0.00 2.66
446 464 9.975218 AATAGATGACCCAACTTTGTATTAACT 57.025 29.630 0.00 0.00 0.00 2.24
450 468 8.531146 CCAAAATAGATGACCCAACTTTGTATT 58.469 33.333 0.00 0.00 0.00 1.89
451 469 7.893302 TCCAAAATAGATGACCCAACTTTGTAT 59.107 33.333 0.00 0.00 0.00 2.29
452 470 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
453 471 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
454 472 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
455 473 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
456 474 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
457 475 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
458 476 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
459 477 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
460 478 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
461 479 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
462 480 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
463 481 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
464 482 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
465 483 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
466 484 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
467 485 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
468 486 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
469 487 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
470 488 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
471 489 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
472 490 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
473 491 1.829222 GATGTACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
474 492 1.272816 TGATGTACTCCCTCCGTTCCA 60.273 52.381 0.00 0.00 0.00 3.53
475 493 1.481871 TGATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
476 494 3.132289 TCAATGATGTACTCCCTCCGTTC 59.868 47.826 0.00 0.00 0.00 3.95
477 495 3.104512 TCAATGATGTACTCCCTCCGTT 58.895 45.455 0.00 0.00 0.00 4.44
478 496 2.431057 GTCAATGATGTACTCCCTCCGT 59.569 50.000 0.00 0.00 0.00 4.69
479 497 2.695666 AGTCAATGATGTACTCCCTCCG 59.304 50.000 0.00 0.00 0.00 4.63
480 498 4.329462 GAGTCAATGATGTACTCCCTCC 57.671 50.000 0.00 0.00 34.79 4.30
485 503 4.867047 CACACAGGAGTCAATGATGTACTC 59.133 45.833 0.00 0.00 39.12 2.59
486 504 4.825422 CACACAGGAGTCAATGATGTACT 58.175 43.478 0.00 0.00 0.00 2.73
487 505 3.372206 GCACACAGGAGTCAATGATGTAC 59.628 47.826 1.89 0.00 0.00 2.90
488 506 3.261643 AGCACACAGGAGTCAATGATGTA 59.738 43.478 1.89 0.00 0.00 2.29
489 507 2.039480 AGCACACAGGAGTCAATGATGT 59.961 45.455 1.89 0.00 0.00 3.06
578 597 1.691976 AGGTTTGACGGACTCACATGA 59.308 47.619 0.00 0.00 0.00 3.07
583 602 4.710324 ACAATAAAGGTTTGACGGACTCA 58.290 39.130 0.00 0.00 0.00 3.41
590 609 6.640907 GGTTGACATGACAATAAAGGTTTGAC 59.359 38.462 13.54 0.00 32.36 3.18
669 688 4.080863 GGCCACTGAAATCCTCTAGAAGAA 60.081 45.833 0.00 0.00 0.00 2.52
705 724 5.950023 AGAGAATGGGCATAGATCAACAAT 58.050 37.500 0.00 0.00 0.00 2.71
1023 1190 6.992664 AGATGAGCAACCTATCTCTATTGT 57.007 37.500 0.00 0.00 0.00 2.71
1035 1202 5.355350 AGTTAGCATTGTTAGATGAGCAACC 59.645 40.000 0.00 0.00 0.00 3.77
1225 1395 1.218316 CGTGAGCTTCTGTACCCCC 59.782 63.158 0.00 0.00 0.00 5.40
1303 1473 7.416817 TGTTTGATATGAAGAATTATGCGTGG 58.583 34.615 0.00 0.00 0.00 4.94
1464 1898 7.486407 AAAATAATGCAACTTGGAATCCTCT 57.514 32.000 0.00 0.00 0.00 3.69
1491 1925 3.286751 GCACCAAAGCAGCGTCCA 61.287 61.111 0.00 0.00 0.00 4.02
1492 1926 4.043200 GGCACCAAAGCAGCGTCC 62.043 66.667 0.00 0.00 35.83 4.79
1493 1927 4.389576 CGGCACCAAAGCAGCGTC 62.390 66.667 0.00 0.00 35.83 5.19
1494 1928 3.818121 TACGGCACCAAAGCAGCGT 62.818 57.895 0.00 0.00 36.59 5.07
1495 1929 2.612567 TTACGGCACCAAAGCAGCG 61.613 57.895 0.00 0.00 35.83 5.18
1496 1930 1.081442 GTTACGGCACCAAAGCAGC 60.081 57.895 0.00 0.00 35.83 5.25
1497 1931 0.238289 CAGTTACGGCACCAAAGCAG 59.762 55.000 0.00 0.00 35.83 4.24
1498 1932 1.791103 GCAGTTACGGCACCAAAGCA 61.791 55.000 2.05 0.00 35.83 3.91
1499 1933 1.081442 GCAGTTACGGCACCAAAGC 60.081 57.895 2.05 0.00 0.00 3.51
1500 1934 2.326222 TGCAGTTACGGCACCAAAG 58.674 52.632 6.01 0.00 36.11 2.77
1501 1935 4.561452 TGCAGTTACGGCACCAAA 57.439 50.000 6.01 0.00 36.11 3.28
1506 1940 2.668212 GCAGGTGCAGTTACGGCA 60.668 61.111 6.01 6.01 41.59 5.69
1516 1950 2.203337 TGACCCAACTGCAGGTGC 60.203 61.111 26.87 13.45 36.17 5.01
1517 1951 1.149174 AGTGACCCAACTGCAGGTG 59.851 57.895 25.38 25.38 36.17 4.00
1518 1952 1.149174 CAGTGACCCAACTGCAGGT 59.851 57.895 19.93 9.19 41.05 4.00
1519 1953 0.886490 GTCAGTGACCCAACTGCAGG 60.886 60.000 19.93 2.94 45.93 4.85
1520 1954 0.179048 TGTCAGTGACCCAACTGCAG 60.179 55.000 20.43 13.48 45.93 4.41
1521 1955 0.473755 ATGTCAGTGACCCAACTGCA 59.526 50.000 20.43 0.00 45.93 4.41
1522 1956 0.877071 CATGTCAGTGACCCAACTGC 59.123 55.000 20.43 0.00 45.93 4.40
1524 1958 1.202806 CCACATGTCAGTGACCCAACT 60.203 52.381 20.43 0.00 42.05 3.16
1525 1959 1.238439 CCACATGTCAGTGACCCAAC 58.762 55.000 20.43 0.00 42.05 3.77
1526 1960 0.110295 CCCACATGTCAGTGACCCAA 59.890 55.000 20.43 2.34 42.05 4.12
1527 1961 1.760527 CCCACATGTCAGTGACCCA 59.239 57.895 20.43 3.20 42.05 4.51
1528 1962 1.675641 GCCCACATGTCAGTGACCC 60.676 63.158 20.43 0.00 42.05 4.46
1529 1963 1.675641 GGCCCACATGTCAGTGACC 60.676 63.158 20.43 2.99 42.05 4.02
1530 1964 0.957395 CTGGCCCACATGTCAGTGAC 60.957 60.000 16.68 16.68 42.05 3.67
1531 1965 1.376086 CTGGCCCACATGTCAGTGA 59.624 57.895 0.00 0.00 42.05 3.41
1532 1966 2.338015 GCTGGCCCACATGTCAGTG 61.338 63.158 12.37 0.00 39.21 3.66
1533 1967 1.200760 TAGCTGGCCCACATGTCAGT 61.201 55.000 12.37 4.29 0.00 3.41
1534 1968 0.182061 ATAGCTGGCCCACATGTCAG 59.818 55.000 0.00 7.70 0.00 3.51
1535 1969 0.181114 GATAGCTGGCCCACATGTCA 59.819 55.000 0.00 0.00 0.00 3.58
1536 1970 0.471617 AGATAGCTGGCCCACATGTC 59.528 55.000 0.00 0.00 0.00 3.06
1537 1971 0.182061 CAGATAGCTGGCCCACATGT 59.818 55.000 0.00 0.00 38.51 3.21
1538 1972 0.182061 ACAGATAGCTGGCCCACATG 59.818 55.000 13.45 0.00 46.60 3.21
1539 1973 0.921896 AACAGATAGCTGGCCCACAT 59.078 50.000 13.45 0.00 46.60 3.21
1540 1974 1.486310 CTAACAGATAGCTGGCCCACA 59.514 52.381 13.45 0.00 46.60 4.17
1541 1975 1.202698 CCTAACAGATAGCTGGCCCAC 60.203 57.143 13.45 0.00 46.60 4.61
1542 1976 1.131638 CCTAACAGATAGCTGGCCCA 58.868 55.000 13.45 0.00 46.60 5.36
1543 1977 1.070914 GTCCTAACAGATAGCTGGCCC 59.929 57.143 13.45 0.00 46.60 5.80
1544 1978 1.070914 GGTCCTAACAGATAGCTGGCC 59.929 57.143 13.45 0.00 46.60 5.36
1545 1979 1.762957 TGGTCCTAACAGATAGCTGGC 59.237 52.381 13.45 0.00 46.60 4.85
1546 1980 2.766263 TGTGGTCCTAACAGATAGCTGG 59.234 50.000 13.45 0.00 46.60 4.85
1547 1981 5.966555 GACATGTGGTCCTAACAGATAGCTG 60.967 48.000 1.15 6.41 43.14 4.24
1548 1982 4.033709 ACATGTGGTCCTAACAGATAGCT 58.966 43.478 0.00 0.00 0.00 3.32
1549 1983 4.141937 TGACATGTGGTCCTAACAGATAGC 60.142 45.833 1.15 0.00 46.38 2.97
1550 1984 5.127845 ACTGACATGTGGTCCTAACAGATAG 59.872 44.000 1.15 0.00 46.38 2.08
1551 1985 5.023452 ACTGACATGTGGTCCTAACAGATA 58.977 41.667 1.15 0.00 46.38 1.98
1552 1986 3.840666 ACTGACATGTGGTCCTAACAGAT 59.159 43.478 1.15 0.00 46.38 2.90
1553 1987 3.006859 CACTGACATGTGGTCCTAACAGA 59.993 47.826 1.15 0.00 46.38 3.41
1554 1988 3.006859 TCACTGACATGTGGTCCTAACAG 59.993 47.826 1.15 4.08 46.38 3.16
1555 1989 2.969262 TCACTGACATGTGGTCCTAACA 59.031 45.455 1.15 0.00 46.38 2.41
1556 1990 3.326747 GTCACTGACATGTGGTCCTAAC 58.673 50.000 1.15 0.00 46.38 2.34
1557 1991 2.301870 GGTCACTGACATGTGGTCCTAA 59.698 50.000 1.15 0.00 46.38 2.69
1558 1992 1.899814 GGTCACTGACATGTGGTCCTA 59.100 52.381 1.15 0.00 46.38 2.94
1559 1993 0.687354 GGTCACTGACATGTGGTCCT 59.313 55.000 1.15 0.00 46.38 3.85
1560 1994 0.687354 AGGTCACTGACATGTGGTCC 59.313 55.000 1.15 0.83 46.38 4.46
1561 1995 5.093285 CAGTTAGGTCACTGACATGTGGTC 61.093 50.000 1.15 0.00 46.29 4.02
1562 1996 2.972713 AGTTAGGTCACTGACATGTGGT 59.027 45.455 1.15 0.00 35.79 4.16
1563 1997 3.329386 CAGTTAGGTCACTGACATGTGG 58.671 50.000 1.15 0.00 46.29 4.17
1564 1998 2.738846 GCAGTTAGGTCACTGACATGTG 59.261 50.000 1.15 5.21 46.29 3.21
1565 1999 2.368548 TGCAGTTAGGTCACTGACATGT 59.631 45.455 11.34 0.00 46.29 3.21
1566 2000 2.998670 CTGCAGTTAGGTCACTGACATG 59.001 50.000 5.25 0.00 46.29 3.21
1567 2001 2.027745 CCTGCAGTTAGGTCACTGACAT 60.028 50.000 13.81 6.54 46.29 3.06
1568 2002 1.344438 CCTGCAGTTAGGTCACTGACA 59.656 52.381 13.81 2.27 46.29 3.58
1569 2003 2.086054 CCTGCAGTTAGGTCACTGAC 57.914 55.000 13.81 0.00 46.29 3.51
1584 2018 2.668212 TGCCGTAACTGCACCTGC 60.668 61.111 0.00 0.00 42.50 4.85
1589 2023 1.227999 GCTTCAGTGCCGTAACTGCA 61.228 55.000 9.30 0.00 45.93 4.41
1590 2024 0.951040 AGCTTCAGTGCCGTAACTGC 60.951 55.000 9.30 0.04 45.93 4.40
1592 2026 0.679505 TGAGCTTCAGTGCCGTAACT 59.320 50.000 0.00 0.00 0.00 2.24
1593 2027 1.071605 CTGAGCTTCAGTGCCGTAAC 58.928 55.000 0.00 0.00 39.58 2.50
1594 2028 3.514777 CTGAGCTTCAGTGCCGTAA 57.485 52.632 0.00 0.00 39.58 3.18
1722 2156 4.998051 ACATTACCCTTCCACTGACAATT 58.002 39.130 0.00 0.00 0.00 2.32
1942 2376 2.262423 AGTTGCTCAGTGTTTCCCTC 57.738 50.000 0.00 0.00 0.00 4.30
1955 2389 0.036875 GCCACCCAAGACTAGTTGCT 59.963 55.000 0.00 0.00 0.00 3.91
2106 2540 0.035881 CATGGCCGATGCATAGAGGT 59.964 55.000 8.55 0.00 40.13 3.85
2145 2579 0.110238 CGTTTGGACATCCAGCAACG 60.110 55.000 18.49 18.49 46.77 4.10
2196 2630 2.747460 CCACCACCATGCCTCACG 60.747 66.667 0.00 0.00 0.00 4.35
2247 2681 2.664851 TCTGTGTTCCCTTGCGCG 60.665 61.111 0.00 0.00 0.00 6.86
2313 2747 2.479837 CGTCCTTGTGCACTCTTTGTA 58.520 47.619 19.41 0.00 0.00 2.41
2322 2756 3.529341 ATCCGTGCGTCCTTGTGCA 62.529 57.895 0.00 0.00 39.13 4.57
2366 2800 1.966451 CCTTGGAACTGGCACCGAC 60.966 63.158 0.00 0.00 0.00 4.79
2367 2801 1.488705 ATCCTTGGAACTGGCACCGA 61.489 55.000 0.00 0.00 0.00 4.69
2433 2867 0.108585 TCTCGCCCAGCAAACTCTTT 59.891 50.000 0.00 0.00 0.00 2.52
2469 2903 0.603975 GACGCTTGGCAGAAGGAAGT 60.604 55.000 0.00 0.00 0.00 3.01
2502 2936 1.270305 GGCTTCACTTCCTTTTTGGGC 60.270 52.381 0.00 0.00 36.20 5.36
2542 2976 0.815213 GCAGCAGTGGTGACAGTCAA 60.815 55.000 25.96 0.00 43.90 3.18
2559 2993 3.006756 GCTCCCAGCAGTAGACGCA 62.007 63.158 0.00 0.00 41.89 5.24
2583 3017 0.179137 GAATACCCTTTGCTTGCGGC 60.179 55.000 0.00 0.00 42.22 6.53
2625 3059 1.136690 TCACGATCTTGTGCGACAAC 58.863 50.000 0.00 0.00 39.73 3.32
2703 3137 1.609208 GTTTCATGGACAGTGCTGGT 58.391 50.000 4.11 0.00 34.19 4.00
2796 3233 0.478072 AAGTCACCTGCACCATGGAA 59.522 50.000 21.47 2.27 0.00 3.53
2860 3299 4.158394 TCTGCTAAAGCCATGGATGTTTTC 59.842 41.667 18.40 7.57 41.18 2.29
2883 3322 1.906824 ACCATGGACGAGTCACCGT 60.907 57.895 21.47 0.00 46.43 4.83
2884 3323 1.446099 CACCATGGACGAGTCACCG 60.446 63.158 21.47 0.00 0.00 4.94
2887 3326 1.691976 ACTTTCACCATGGACGAGTCA 59.308 47.619 21.47 0.00 0.00 3.41
2892 3331 2.858260 GCAACAACTTTCACCATGGACG 60.858 50.000 21.47 9.32 0.00 4.79
2915 3356 0.586802 GAAAAAGGCGACGTCAAGCT 59.413 50.000 17.16 0.00 0.00 3.74
2945 3392 7.118390 AGAGATTTGACATGTTAGACGGAAAAG 59.882 37.037 0.00 0.00 0.00 2.27
3014 3467 2.563471 ATAGTCCGACGAGCAGTTTC 57.437 50.000 0.00 0.00 0.00 2.78
3015 3468 3.630769 TCATATAGTCCGACGAGCAGTTT 59.369 43.478 0.00 0.00 0.00 2.66
3069 3525 3.617540 TTCGAAAACACGTCATTGCAT 57.382 38.095 0.00 0.00 34.70 3.96
3077 3533 2.159627 GCAGGATCATTCGAAAACACGT 59.840 45.455 0.00 0.00 34.70 4.49
3083 3539 3.333029 TGTCAGCAGGATCATTCGAAA 57.667 42.857 0.00 0.00 0.00 3.46
3084 3540 3.264947 CTTGTCAGCAGGATCATTCGAA 58.735 45.455 0.00 0.00 0.00 3.71
3085 3541 2.419159 CCTTGTCAGCAGGATCATTCGA 60.419 50.000 0.00 0.00 0.00 3.71
3086 3542 1.938577 CCTTGTCAGCAGGATCATTCG 59.061 52.381 0.00 0.00 0.00 3.34
3087 3543 2.092753 TCCCTTGTCAGCAGGATCATTC 60.093 50.000 0.00 0.00 0.00 2.67
3088 3544 1.918262 TCCCTTGTCAGCAGGATCATT 59.082 47.619 0.00 0.00 0.00 2.57
3089 3545 1.489649 CTCCCTTGTCAGCAGGATCAT 59.510 52.381 0.00 0.00 0.00 2.45
3090 3546 0.907486 CTCCCTTGTCAGCAGGATCA 59.093 55.000 0.00 0.00 0.00 2.92
3091 3547 0.179936 CCTCCCTTGTCAGCAGGATC 59.820 60.000 0.00 0.00 0.00 3.36
3092 3548 0.548682 ACCTCCCTTGTCAGCAGGAT 60.549 55.000 0.00 0.00 0.00 3.24
3093 3549 1.152030 ACCTCCCTTGTCAGCAGGA 60.152 57.895 0.00 0.00 0.00 3.86
3094 3550 1.197430 AGACCTCCCTTGTCAGCAGG 61.197 60.000 0.00 0.00 35.15 4.85
3095 3551 0.689623 AAGACCTCCCTTGTCAGCAG 59.310 55.000 0.00 0.00 35.15 4.24
3096 3552 1.072331 GAAAGACCTCCCTTGTCAGCA 59.928 52.381 0.00 0.00 35.15 4.41
3097 3553 1.349357 AGAAAGACCTCCCTTGTCAGC 59.651 52.381 0.00 0.00 35.15 4.26
3098 3554 3.778954 AAGAAAGACCTCCCTTGTCAG 57.221 47.619 0.00 0.00 35.15 3.51
3099 3555 3.716872 AGAAAGAAAGACCTCCCTTGTCA 59.283 43.478 0.00 0.00 35.15 3.58
3100 3556 4.320023 GAGAAAGAAAGACCTCCCTTGTC 58.680 47.826 0.00 0.00 0.00 3.18
3101 3557 3.073209 GGAGAAAGAAAGACCTCCCTTGT 59.927 47.826 0.00 0.00 39.33 3.16
3102 3558 3.680490 GGAGAAAGAAAGACCTCCCTTG 58.320 50.000 0.00 0.00 39.33 3.61
3103 3559 2.303311 CGGAGAAAGAAAGACCTCCCTT 59.697 50.000 0.00 0.00 41.54 3.95
3104 3560 1.903183 CGGAGAAAGAAAGACCTCCCT 59.097 52.381 0.00 0.00 41.54 4.20
3105 3561 1.624312 ACGGAGAAAGAAAGACCTCCC 59.376 52.381 0.00 0.00 41.54 4.30
3106 3562 2.689646 CACGGAGAAAGAAAGACCTCC 58.310 52.381 0.00 0.00 41.25 4.30
3107 3563 2.070028 GCACGGAGAAAGAAAGACCTC 58.930 52.381 0.00 0.00 0.00 3.85
3108 3564 1.694696 AGCACGGAGAAAGAAAGACCT 59.305 47.619 0.00 0.00 0.00 3.85
3109 3565 2.171341 AGCACGGAGAAAGAAAGACC 57.829 50.000 0.00 0.00 0.00 3.85
3110 3566 3.059529 GTGAAGCACGGAGAAAGAAAGAC 60.060 47.826 0.00 0.00 0.00 3.01
3111 3567 3.131396 GTGAAGCACGGAGAAAGAAAGA 58.869 45.455 0.00 0.00 0.00 2.52
3112 3568 3.059325 CAGTGAAGCACGGAGAAAGAAAG 60.059 47.826 0.00 0.00 39.64 2.62
3113 3569 2.872245 CAGTGAAGCACGGAGAAAGAAA 59.128 45.455 0.00 0.00 39.64 2.52
3169 3625 1.005394 GCTATGCATTGGCCATGGC 60.005 57.895 29.47 29.47 40.13 4.40
3170 3626 1.669440 GGCTATGCATTGGCCATGG 59.331 57.895 27.57 7.63 44.69 3.66
3174 3630 1.177256 CCTGAGGCTATGCATTGGCC 61.177 60.000 26.45 26.29 45.57 5.36
3175 3631 1.177256 CCCTGAGGCTATGCATTGGC 61.177 60.000 23.68 23.68 41.68 4.52
3176 3632 0.184451 ACCCTGAGGCTATGCATTGG 59.816 55.000 3.54 0.00 36.11 3.16
3177 3633 1.134007 TCACCCTGAGGCTATGCATTG 60.134 52.381 3.54 3.55 36.11 2.82
3178 3634 1.216064 TCACCCTGAGGCTATGCATT 58.784 50.000 3.54 0.00 36.11 3.56
3179 3635 1.073444 CATCACCCTGAGGCTATGCAT 59.927 52.381 3.79 3.79 36.11 3.96
3180 3636 0.471191 CATCACCCTGAGGCTATGCA 59.529 55.000 0.00 0.00 36.11 3.96
3181 3637 3.319135 CATCACCCTGAGGCTATGC 57.681 57.895 0.00 0.00 36.11 3.14
3187 3643 2.806945 TTAAAGGCATCACCCTGAGG 57.193 50.000 0.00 0.00 40.58 3.86
3188 3644 4.678840 GCAATTTAAAGGCATCACCCTGAG 60.679 45.833 9.15 0.00 40.58 3.35
3189 3645 3.195396 GCAATTTAAAGGCATCACCCTGA 59.805 43.478 9.15 0.00 40.58 3.86
3190 3646 3.524541 GCAATTTAAAGGCATCACCCTG 58.475 45.455 9.15 0.00 40.58 4.45
3191 3647 2.501316 GGCAATTTAAAGGCATCACCCT 59.499 45.455 14.37 0.00 40.58 4.34
3192 3648 2.501316 AGGCAATTTAAAGGCATCACCC 59.499 45.455 14.37 0.00 40.58 4.61
3193 3649 3.524541 CAGGCAATTTAAAGGCATCACC 58.475 45.455 14.37 1.02 39.61 4.02
3194 3650 2.931969 GCAGGCAATTTAAAGGCATCAC 59.068 45.455 14.37 1.65 0.00 3.06
3195 3651 2.833338 AGCAGGCAATTTAAAGGCATCA 59.167 40.909 14.37 0.00 0.00 3.07
3196 3652 3.119029 TGAGCAGGCAATTTAAAGGCATC 60.119 43.478 14.37 8.33 0.00 3.91
3197 3653 2.833338 TGAGCAGGCAATTTAAAGGCAT 59.167 40.909 14.37 6.50 0.00 4.40
3198 3654 2.029110 GTGAGCAGGCAATTTAAAGGCA 60.029 45.455 14.37 0.00 0.00 4.75
3199 3655 2.610433 GTGAGCAGGCAATTTAAAGGC 58.390 47.619 6.18 6.18 0.00 4.35
3200 3656 2.228822 ACGTGAGCAGGCAATTTAAAGG 59.771 45.455 0.00 0.00 0.00 3.11
3201 3657 3.236816 CACGTGAGCAGGCAATTTAAAG 58.763 45.455 10.90 0.00 0.00 1.85
3202 3658 2.621055 ACACGTGAGCAGGCAATTTAAA 59.379 40.909 25.01 0.00 0.00 1.52
3203 3659 2.031245 CACACGTGAGCAGGCAATTTAA 60.031 45.455 25.01 0.00 0.00 1.52
3204 3660 1.535028 CACACGTGAGCAGGCAATTTA 59.465 47.619 25.01 0.00 0.00 1.40
3205 3661 0.311790 CACACGTGAGCAGGCAATTT 59.688 50.000 25.01 0.00 0.00 1.82
3206 3662 0.819259 ACACACGTGAGCAGGCAATT 60.819 50.000 25.01 0.00 0.00 2.32
3207 3663 0.034756 TACACACGTGAGCAGGCAAT 59.965 50.000 25.01 0.00 0.00 3.56
3208 3664 0.034756 ATACACACGTGAGCAGGCAA 59.965 50.000 25.01 0.00 0.00 4.52
3209 3665 0.892063 TATACACACGTGAGCAGGCA 59.108 50.000 25.01 0.00 0.00 4.75
3210 3666 2.004583 TTATACACACGTGAGCAGGC 57.995 50.000 25.01 0.00 0.00 4.85
3211 3667 6.844696 AATAATTATACACACGTGAGCAGG 57.155 37.500 25.01 8.36 0.00 4.85
3212 3668 8.435430 CCATAATAATTATACACACGTGAGCAG 58.565 37.037 25.01 11.25 0.00 4.24
3213 3669 7.095397 GCCATAATAATTATACACACGTGAGCA 60.095 37.037 25.01 5.22 0.00 4.26
3214 3670 7.095397 TGCCATAATAATTATACACACGTGAGC 60.095 37.037 25.01 0.00 0.00 4.26
3215 3671 8.305441 TGCCATAATAATTATACACACGTGAG 57.695 34.615 25.01 18.00 0.00 3.51
3216 3672 8.840833 ATGCCATAATAATTATACACACGTGA 57.159 30.769 25.01 0.00 0.00 4.35
3217 3673 8.935844 AGATGCCATAATAATTATACACACGTG 58.064 33.333 15.48 15.48 0.00 4.49
3228 3684 8.522830 CCGGACAATTTAGATGCCATAATAATT 58.477 33.333 0.00 0.00 0.00 1.40
3229 3685 7.669722 ACCGGACAATTTAGATGCCATAATAAT 59.330 33.333 9.46 0.00 0.00 1.28
3230 3686 7.001674 ACCGGACAATTTAGATGCCATAATAA 58.998 34.615 9.46 0.00 0.00 1.40
3231 3687 6.539173 ACCGGACAATTTAGATGCCATAATA 58.461 36.000 9.46 0.00 0.00 0.98
3232 3688 5.385198 ACCGGACAATTTAGATGCCATAAT 58.615 37.500 9.46 0.00 0.00 1.28
3233 3689 4.787551 ACCGGACAATTTAGATGCCATAA 58.212 39.130 9.46 0.00 0.00 1.90
3234 3690 4.141597 TGACCGGACAATTTAGATGCCATA 60.142 41.667 9.46 0.00 0.00 2.74
3235 3691 3.214328 GACCGGACAATTTAGATGCCAT 58.786 45.455 9.46 0.00 0.00 4.40
3236 3692 2.026729 TGACCGGACAATTTAGATGCCA 60.027 45.455 9.46 0.00 0.00 4.92
3237 3693 2.639065 TGACCGGACAATTTAGATGCC 58.361 47.619 9.46 0.00 0.00 4.40
3238 3694 3.627577 ACATGACCGGACAATTTAGATGC 59.372 43.478 9.46 0.00 0.00 3.91
3239 3695 4.496341 GCACATGACCGGACAATTTAGATG 60.496 45.833 9.46 3.93 0.00 2.90
3240 3696 3.627577 GCACATGACCGGACAATTTAGAT 59.372 43.478 9.46 0.00 0.00 1.98
3241 3697 3.006940 GCACATGACCGGACAATTTAGA 58.993 45.455 9.46 0.00 0.00 2.10
3242 3698 2.746904 TGCACATGACCGGACAATTTAG 59.253 45.455 9.46 0.12 0.00 1.85
3243 3699 2.784347 TGCACATGACCGGACAATTTA 58.216 42.857 9.46 0.00 0.00 1.40
3244 3700 1.614996 TGCACATGACCGGACAATTT 58.385 45.000 9.46 0.00 0.00 1.82
3245 3701 1.838112 ATGCACATGACCGGACAATT 58.162 45.000 9.46 0.00 0.00 2.32
3246 3702 2.708216 TATGCACATGACCGGACAAT 57.292 45.000 9.46 0.07 0.00 2.71
3247 3703 2.708216 ATATGCACATGACCGGACAA 57.292 45.000 9.46 0.00 0.00 3.18
3248 3704 3.386402 TCTTATATGCACATGACCGGACA 59.614 43.478 9.46 9.50 0.00 4.02
3249 3705 3.990092 TCTTATATGCACATGACCGGAC 58.010 45.455 9.46 1.07 0.00 4.79
3250 3706 3.554960 GCTCTTATATGCACATGACCGGA 60.555 47.826 9.46 0.00 0.00 5.14
3251 3707 2.738846 GCTCTTATATGCACATGACCGG 59.261 50.000 0.00 0.00 0.00 5.28
3252 3708 3.392882 TGCTCTTATATGCACATGACCG 58.607 45.455 0.00 0.00 33.94 4.79
3253 3709 4.818546 AGTTGCTCTTATATGCACATGACC 59.181 41.667 0.00 0.00 39.05 4.02
3254 3710 5.049818 GGAGTTGCTCTTATATGCACATGAC 60.050 44.000 0.00 0.00 39.05 3.06
3255 3711 5.059161 GGAGTTGCTCTTATATGCACATGA 58.941 41.667 0.00 0.00 39.05 3.07
3256 3712 4.818005 TGGAGTTGCTCTTATATGCACATG 59.182 41.667 0.00 0.00 39.05 3.21
3257 3713 5.039920 TGGAGTTGCTCTTATATGCACAT 57.960 39.130 0.00 0.00 39.05 3.21
3258 3714 4.486125 TGGAGTTGCTCTTATATGCACA 57.514 40.909 0.00 0.00 39.05 4.57
3259 3715 4.260375 CGTTGGAGTTGCTCTTATATGCAC 60.260 45.833 0.00 0.00 39.05 4.57
3260 3716 3.871006 CGTTGGAGTTGCTCTTATATGCA 59.129 43.478 0.00 0.00 37.42 3.96
3261 3717 3.248602 CCGTTGGAGTTGCTCTTATATGC 59.751 47.826 0.00 0.00 0.00 3.14
3262 3718 3.809832 CCCGTTGGAGTTGCTCTTATATG 59.190 47.826 0.00 0.00 0.00 1.78
3263 3719 3.744530 GCCCGTTGGAGTTGCTCTTATAT 60.745 47.826 0.00 0.00 0.00 0.86
3264 3720 2.419574 GCCCGTTGGAGTTGCTCTTATA 60.420 50.000 0.00 0.00 0.00 0.98
3350 3806 5.947663 TGACCCAAAACTAAAAGAGGATGA 58.052 37.500 0.00 0.00 0.00 2.92
3352 3808 4.767409 GCTGACCCAAAACTAAAAGAGGAT 59.233 41.667 0.00 0.00 0.00 3.24
3412 3868 0.431984 CGACACGATGTTAAACGCGT 59.568 50.000 5.58 5.58 33.22 6.01
3449 3906 1.894756 CCTTTCCCGCGTGTTGGAA 60.895 57.895 10.06 10.06 38.84 3.53
3454 3911 2.663852 CGAACCTTTCCCGCGTGT 60.664 61.111 4.92 0.00 0.00 4.49
3819 4344 1.829849 CTTCTCTGTGATGGAGAGGCA 59.170 52.381 0.00 0.00 40.35 4.75
3825 4350 1.546029 CACGTCCTTCTCTGTGATGGA 59.454 52.381 9.50 9.50 43.93 3.41
3831 4356 0.318762 GCTTCCACGTCCTTCTCTGT 59.681 55.000 0.00 0.00 0.00 3.41
4061 4586 1.958579 TCCTCCTTCGACGTTTGAAGA 59.041 47.619 24.70 14.03 44.42 2.87
4074 4599 1.749634 CGACTCGGTAATGTCCTCCTT 59.250 52.381 0.00 0.00 0.00 3.36
4305 4834 0.682855 CCGGCCCATTTTTGAGGCTA 60.683 55.000 0.00 0.00 46.31 3.93
4461 4990 8.847196 GTTAGTCCTTGAGTTGGTCTTATTTTT 58.153 33.333 0.00 0.00 0.00 1.94
4462 4991 7.447545 GGTTAGTCCTTGAGTTGGTCTTATTTT 59.552 37.037 0.00 0.00 0.00 1.82
4463 4992 6.940867 GGTTAGTCCTTGAGTTGGTCTTATTT 59.059 38.462 0.00 0.00 0.00 1.40
4464 4993 6.473758 GGTTAGTCCTTGAGTTGGTCTTATT 58.526 40.000 0.00 0.00 0.00 1.40
4465 4994 5.045797 GGGTTAGTCCTTGAGTTGGTCTTAT 60.046 44.000 0.00 0.00 36.25 1.73
4466 4995 4.285260 GGGTTAGTCCTTGAGTTGGTCTTA 59.715 45.833 0.00 0.00 36.25 2.10
4467 4996 3.072622 GGGTTAGTCCTTGAGTTGGTCTT 59.927 47.826 0.00 0.00 36.25 3.01
4468 4997 2.638363 GGGTTAGTCCTTGAGTTGGTCT 59.362 50.000 0.00 0.00 36.25 3.85
4469 4998 2.638363 AGGGTTAGTCCTTGAGTTGGTC 59.362 50.000 0.00 0.00 32.13 4.02
4470 4999 2.702748 AGGGTTAGTCCTTGAGTTGGT 58.297 47.619 0.00 0.00 32.13 3.67
4471 5000 3.790089 AAGGGTTAGTCCTTGAGTTGG 57.210 47.619 0.00 0.00 44.78 3.77
4500 5029 8.397906 CGGTGCTCATAAATTTTCTCTCATAAA 58.602 33.333 0.00 0.00 0.00 1.40
4501 5030 7.467267 GCGGTGCTCATAAATTTTCTCTCATAA 60.467 37.037 0.00 0.00 0.00 1.90
4502 5031 6.017934 GCGGTGCTCATAAATTTTCTCTCATA 60.018 38.462 0.00 0.00 0.00 2.15
4503 5032 5.220931 GCGGTGCTCATAAATTTTCTCTCAT 60.221 40.000 0.00 0.00 0.00 2.90
4504 5033 4.094887 GCGGTGCTCATAAATTTTCTCTCA 59.905 41.667 0.00 0.00 0.00 3.27
4505 5034 4.592179 GCGGTGCTCATAAATTTTCTCTC 58.408 43.478 0.00 0.00 0.00 3.20
4506 5035 3.063997 CGCGGTGCTCATAAATTTTCTCT 59.936 43.478 0.00 0.00 0.00 3.10
4507 5036 3.354397 CGCGGTGCTCATAAATTTTCTC 58.646 45.455 0.00 0.00 0.00 2.87
4508 5037 2.477863 GCGCGGTGCTCATAAATTTTCT 60.478 45.455 8.83 0.00 41.73 2.52
4509 5038 1.846175 GCGCGGTGCTCATAAATTTTC 59.154 47.619 8.83 0.00 41.73 2.29
4510 5039 1.793714 CGCGCGGTGCTCATAAATTTT 60.794 47.619 24.84 0.00 43.27 1.82
4511 5040 0.248054 CGCGCGGTGCTCATAAATTT 60.248 50.000 24.84 0.00 43.27 1.82
4512 5041 1.351707 CGCGCGGTGCTCATAAATT 59.648 52.632 24.84 0.00 43.27 1.82
4513 5042 1.762222 GACGCGCGGTGCTCATAAAT 61.762 55.000 35.22 7.97 43.27 1.40
4514 5043 2.433491 ACGCGCGGTGCTCATAAA 60.433 55.556 35.22 0.00 43.27 1.40
4515 5044 2.883730 GACGCGCGGTGCTCATAA 60.884 61.111 35.22 0.00 43.27 1.90
4516 5045 4.865761 GGACGCGCGGTGCTCATA 62.866 66.667 35.22 0.00 43.27 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.