Multiple sequence alignment - TraesCS6A01G044500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G044500 chr6A 100.000 3812 0 0 1 3812 23345489 23341678 0.000000e+00 7040.0
1 TraesCS6A01G044500 chr6A 92.895 1703 104 12 1279 2967 23426290 23427989 0.000000e+00 2459.0
2 TraesCS6A01G044500 chr6A 88.618 369 30 6 1 365 257352753 257353113 4.520000e-119 438.0
3 TraesCS6A01G044500 chr6A 89.815 216 20 2 2208 2421 22687589 22687374 3.750000e-70 276.0
4 TraesCS6A01G044500 chr6A 90.000 90 7 2 391 478 23445466 23445555 8.650000e-22 115.0
5 TraesCS6A01G044500 chr6D 92.058 2279 139 24 705 2967 24879440 24881692 0.000000e+00 3168.0
6 TraesCS6A01G044500 chr6D 93.444 1327 77 5 1219 2536 24451276 24449951 0.000000e+00 1960.0
7 TraesCS6A01G044500 chr6D 89.231 1430 101 20 726 2140 24714309 24712918 0.000000e+00 1738.0
8 TraesCS6A01G044500 chr6D 96.339 956 15 3 2857 3812 24700050 24699115 0.000000e+00 1554.0
9 TraesCS6A01G044500 chr6D 77.813 1262 212 37 840 2060 24671982 24670748 0.000000e+00 717.0
10 TraesCS6A01G044500 chr6D 97.826 322 5 1 2537 2858 24712604 24712285 4.300000e-154 555.0
11 TraesCS6A01G044500 chr6D 92.651 381 25 2 2589 2967 24449944 24449565 2.590000e-151 545.0
12 TraesCS6A01G044500 chr6D 84.007 569 82 4 2401 2967 24344056 24344617 4.330000e-149 538.0
13 TraesCS6A01G044500 chr6D 84.007 569 82 4 2401 2967 24395271 24394710 4.330000e-149 538.0
14 TraesCS6A01G044500 chr6D 95.283 318 10 1 2178 2490 24712924 24712607 2.040000e-137 499.0
15 TraesCS6A01G044500 chr6D 81.495 562 52 15 646 1206 24451950 24451440 7.620000e-112 414.0
16 TraesCS6A01G044500 chr6D 90.278 216 19 1 2208 2421 24224582 24224367 8.060000e-72 281.0
17 TraesCS6A01G044500 chr6B 86.110 2347 269 24 636 2967 40253669 40251365 0.000000e+00 2475.0
18 TraesCS6A01G044500 chr6B 79.037 2223 353 60 778 2967 39677699 39675557 0.000000e+00 1419.0
19 TraesCS6A01G044500 chr6B 77.894 1339 205 59 960 2240 40589113 40590418 0.000000e+00 749.0
20 TraesCS6A01G044500 chr6B 84.020 607 66 19 2330 2923 40145361 40144773 4.300000e-154 555.0
21 TraesCS6A01G044500 chr6B 78.750 160 24 5 387 537 644361842 644362000 8.710000e-17 99.0
22 TraesCS6A01G044500 chr4A 92.152 395 20 3 1 389 395249429 395249040 7.200000e-152 547.0
23 TraesCS6A01G044500 chr4A 84.091 528 38 15 3310 3809 661027470 661027979 5.770000e-128 468.0
24 TraesCS6A01G044500 chr4A 91.503 306 21 2 3008 3313 669578091 669577791 2.120000e-112 416.0
25 TraesCS6A01G044500 chr4A 90.189 265 22 1 102 366 540418663 540418923 3.650000e-90 342.0
26 TraesCS6A01G044500 chr5B 90.250 400 26 7 1 393 666395797 666396190 9.450000e-141 510.0
27 TraesCS6A01G044500 chr5B 89.972 359 23 5 42 393 690939294 690939646 5.810000e-123 451.0
28 TraesCS6A01G044500 chr5B 93.359 256 15 2 2984 3238 60882993 60882739 1.000000e-100 377.0
29 TraesCS6A01G044500 chr5B 81.169 154 21 7 391 537 100222258 100222410 2.410000e-22 117.0
30 TraesCS6A01G044500 chr5B 83.898 118 12 6 391 501 465823443 465823560 5.210000e-19 106.0
31 TraesCS6A01G044500 chr3A 89.918 367 27 4 1 365 221515918 221516276 7.460000e-127 464.0
32 TraesCS6A01G044500 chr5A 91.045 335 20 4 1 333 411329137 411329463 9.720000e-121 444.0
33 TraesCS6A01G044500 chr5A 88.828 367 31 4 1 365 70134660 70135018 3.490000e-120 442.0
34 TraesCS6A01G044500 chr2B 90.964 332 25 3 2983 3313 713673559 713673232 3.490000e-120 442.0
35 TraesCS6A01G044500 chr2B 86.017 236 25 3 2983 3218 757856316 757856089 2.940000e-61 246.0
36 TraesCS6A01G044500 chr2B 82.692 156 17 6 391 537 114554906 114555060 3.090000e-26 130.0
37 TraesCS6A01G044500 chr2B 87.234 94 10 2 387 478 165249809 165249902 5.210000e-19 106.0
38 TraesCS6A01G044500 chr1A 88.828 367 31 4 1 365 175542443 175542085 3.490000e-120 442.0
39 TraesCS6A01G044500 chr2D 92.384 302 20 2 3013 3313 38506927 38507226 9.790000e-116 427.0
40 TraesCS6A01G044500 chr2D 82.979 329 25 11 2985 3313 570141545 570141842 6.280000e-68 268.0
41 TraesCS6A01G044500 chr2D 77.391 230 23 10 3310 3510 548253071 548252842 4.030000e-20 110.0
42 TraesCS6A01G044500 chr4D 91.698 265 18 1 102 366 56741915 56741655 7.780000e-97 364.0
43 TraesCS6A01G044500 chr4D 86.547 223 27 2 3090 3311 340027523 340027743 3.800000e-60 243.0
44 TraesCS6A01G044500 chr2A 94.118 170 7 2 1 170 71088301 71088135 4.890000e-64 255.0
45 TraesCS6A01G044500 chr2A 87.442 215 22 2 2983 3197 108248768 108248559 3.800000e-60 243.0
46 TraesCS6A01G044500 chr2A 96.639 119 3 1 3195 3313 710603170 710603053 3.000000e-46 196.0
47 TraesCS6A01G044500 chr2A 78.710 155 24 4 391 537 669121850 669121697 1.130000e-15 95.3
48 TraesCS6A01G044500 chr4B 85.833 240 23 6 2982 3218 623065142 623065373 1.060000e-60 244.0
49 TraesCS6A01G044500 chr4B 81.481 162 18 5 386 537 464539546 464539387 5.170000e-24 122.0
50 TraesCS6A01G044500 chr1D 92.500 160 11 1 3155 3313 316334645 316334804 1.070000e-55 228.0
51 TraesCS6A01G044500 chr1D 94.000 150 8 1 3165 3313 114162716 114162567 3.830000e-55 226.0
52 TraesCS6A01G044500 chr7A 88.889 90 8 2 391 478 545741956 545741867 4.030000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G044500 chr6A 23341678 23345489 3811 True 7040.000000 7040 100.000000 1 3812 1 chr6A.!!$R2 3811
1 TraesCS6A01G044500 chr6A 23426290 23427989 1699 False 2459.000000 2459 92.895000 1279 2967 1 chr6A.!!$F1 1688
2 TraesCS6A01G044500 chr6D 24879440 24881692 2252 False 3168.000000 3168 92.058000 705 2967 1 chr6D.!!$F2 2262
3 TraesCS6A01G044500 chr6D 24699115 24700050 935 True 1554.000000 1554 96.339000 2857 3812 1 chr6D.!!$R4 955
4 TraesCS6A01G044500 chr6D 24449565 24451950 2385 True 973.000000 1960 89.196667 646 2967 3 chr6D.!!$R5 2321
5 TraesCS6A01G044500 chr6D 24712285 24714309 2024 True 930.666667 1738 94.113333 726 2858 3 chr6D.!!$R6 2132
6 TraesCS6A01G044500 chr6D 24670748 24671982 1234 True 717.000000 717 77.813000 840 2060 1 chr6D.!!$R3 1220
7 TraesCS6A01G044500 chr6D 24344056 24344617 561 False 538.000000 538 84.007000 2401 2967 1 chr6D.!!$F1 566
8 TraesCS6A01G044500 chr6D 24394710 24395271 561 True 538.000000 538 84.007000 2401 2967 1 chr6D.!!$R2 566
9 TraesCS6A01G044500 chr6B 40251365 40253669 2304 True 2475.000000 2475 86.110000 636 2967 1 chr6B.!!$R3 2331
10 TraesCS6A01G044500 chr6B 39675557 39677699 2142 True 1419.000000 1419 79.037000 778 2967 1 chr6B.!!$R1 2189
11 TraesCS6A01G044500 chr6B 40589113 40590418 1305 False 749.000000 749 77.894000 960 2240 1 chr6B.!!$F1 1280
12 TraesCS6A01G044500 chr6B 40144773 40145361 588 True 555.000000 555 84.020000 2330 2923 1 chr6B.!!$R2 593
13 TraesCS6A01G044500 chr4A 661027470 661027979 509 False 468.000000 468 84.091000 3310 3809 1 chr4A.!!$F2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 557 0.032952 TATCGTGTCTTATGGGGCGC 59.967 55.0 0.0 0.0 0.0 6.53 F
1191 1209 0.095417 GTCTTCGCATCAACGGAAGC 59.905 55.0 0.0 0.0 34.5 3.86 F
1249 1422 1.027357 CAAGTTTGTGAGCTGCCTGT 58.973 50.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 1886 2.162408 GCTTTCGAGAAATGGGGTTCTG 59.838 50.000 0.0 0.0 37.98 3.02 R
2797 3097 1.620819 CTCCATCTATCCCTTGGTCCG 59.379 57.143 0.0 0.0 0.00 4.79 R
3104 3416 3.417101 TGTTTCGTGGACCAATTGCTAT 58.583 40.909 0.0 0.0 0.00 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.670227 GGAGTAAGTTCACTGCATTCAC 57.330 45.455 0.00 0.00 36.90 3.18
22 23 4.065088 GGAGTAAGTTCACTGCATTCACA 58.935 43.478 0.00 0.00 36.90 3.58
23 24 4.697352 GGAGTAAGTTCACTGCATTCACAT 59.303 41.667 0.00 0.00 36.90 3.21
24 25 5.874810 GGAGTAAGTTCACTGCATTCACATA 59.125 40.000 0.00 0.00 36.90 2.29
25 26 6.183360 GGAGTAAGTTCACTGCATTCACATAC 60.183 42.308 0.00 0.00 36.90 2.39
26 27 6.467677 AGTAAGTTCACTGCATTCACATACT 58.532 36.000 0.00 0.00 0.00 2.12
27 28 5.618056 AAGTTCACTGCATTCACATACTG 57.382 39.130 0.00 0.00 0.00 2.74
28 29 4.005650 AGTTCACTGCATTCACATACTGG 58.994 43.478 0.00 0.00 0.00 4.00
29 30 3.979101 TCACTGCATTCACATACTGGA 57.021 42.857 0.00 0.00 0.00 3.86
30 31 3.865446 TCACTGCATTCACATACTGGAG 58.135 45.455 0.00 0.00 34.85 3.86
31 32 3.515104 TCACTGCATTCACATACTGGAGA 59.485 43.478 0.00 0.00 33.18 3.71
32 33 3.869832 CACTGCATTCACATACTGGAGAG 59.130 47.826 0.00 0.00 33.18 3.20
33 34 3.517100 ACTGCATTCACATACTGGAGAGT 59.483 43.478 0.00 0.00 33.18 3.24
34 35 4.711846 ACTGCATTCACATACTGGAGAGTA 59.288 41.667 0.00 0.00 39.07 2.59
35 36 5.187772 ACTGCATTCACATACTGGAGAGTAA 59.812 40.000 0.00 0.00 38.21 2.24
36 37 6.048732 TGCATTCACATACTGGAGAGTAAA 57.951 37.500 0.00 0.00 38.21 2.01
37 38 6.472016 TGCATTCACATACTGGAGAGTAAAA 58.528 36.000 0.00 0.00 38.21 1.52
38 39 7.112122 TGCATTCACATACTGGAGAGTAAAAT 58.888 34.615 0.00 0.00 38.21 1.82
39 40 8.264347 TGCATTCACATACTGGAGAGTAAAATA 58.736 33.333 0.00 0.00 38.21 1.40
40 41 9.109393 GCATTCACATACTGGAGAGTAAAATAA 57.891 33.333 0.00 0.00 38.21 1.40
50 51 9.588096 ACTGGAGAGTAAAATAATGAAAACCTT 57.412 29.630 0.00 0.00 0.00 3.50
52 53 9.020731 TGGAGAGTAAAATAATGAAAACCTTCC 57.979 33.333 0.00 0.00 0.00 3.46
53 54 9.244292 GGAGAGTAAAATAATGAAAACCTTCCT 57.756 33.333 0.00 0.00 0.00 3.36
60 61 8.477419 AAATAATGAAAACCTTCCTTGAGTGA 57.523 30.769 0.00 0.00 0.00 3.41
61 62 8.655935 AATAATGAAAACCTTCCTTGAGTGAT 57.344 30.769 0.00 0.00 0.00 3.06
62 63 5.972107 ATGAAAACCTTCCTTGAGTGATG 57.028 39.130 0.00 0.00 0.00 3.07
63 64 5.047566 TGAAAACCTTCCTTGAGTGATGA 57.952 39.130 0.00 0.00 0.00 2.92
64 65 4.821805 TGAAAACCTTCCTTGAGTGATGAC 59.178 41.667 0.00 0.00 0.00 3.06
65 66 4.713792 AAACCTTCCTTGAGTGATGACT 57.286 40.909 0.00 0.00 33.98 3.41
66 67 3.692257 ACCTTCCTTGAGTGATGACTG 57.308 47.619 0.00 0.00 30.16 3.51
67 68 3.242867 ACCTTCCTTGAGTGATGACTGA 58.757 45.455 0.00 0.00 30.16 3.41
68 69 3.843027 ACCTTCCTTGAGTGATGACTGAT 59.157 43.478 0.00 0.00 30.16 2.90
69 70 4.081198 ACCTTCCTTGAGTGATGACTGATC 60.081 45.833 0.00 0.00 30.16 2.92
70 71 4.081254 CCTTCCTTGAGTGATGACTGATCA 60.081 45.833 0.00 0.00 38.87 2.92
84 85 9.371136 TGATGACTGATCACAAGATTTTAGTAC 57.629 33.333 0.00 0.00 37.79 2.73
85 86 9.371136 GATGACTGATCACAAGATTTTAGTACA 57.629 33.333 0.00 0.00 37.79 2.90
86 87 9.896645 ATGACTGATCACAAGATTTTAGTACAT 57.103 29.630 0.00 0.00 37.79 2.29
115 116 9.444600 AAAAATACGATAAAACTAGCTTCAGGA 57.555 29.630 0.00 0.00 0.00 3.86
116 117 8.421673 AAATACGATAAAACTAGCTTCAGGAC 57.578 34.615 0.00 0.00 0.00 3.85
117 118 4.421948 ACGATAAAACTAGCTTCAGGACG 58.578 43.478 0.00 0.00 0.00 4.79
118 119 4.157289 ACGATAAAACTAGCTTCAGGACGA 59.843 41.667 0.00 0.00 0.00 4.20
119 120 5.100259 CGATAAAACTAGCTTCAGGACGAA 58.900 41.667 0.00 0.00 0.00 3.85
120 121 5.004535 CGATAAAACTAGCTTCAGGACGAAC 59.995 44.000 0.00 0.00 0.00 3.95
121 122 3.746045 AAACTAGCTTCAGGACGAACA 57.254 42.857 0.00 0.00 0.00 3.18
122 123 3.305398 AACTAGCTTCAGGACGAACAG 57.695 47.619 0.00 0.00 0.00 3.16
123 124 1.067495 ACTAGCTTCAGGACGAACAGC 60.067 52.381 0.00 0.00 0.00 4.40
124 125 0.966179 TAGCTTCAGGACGAACAGCA 59.034 50.000 0.00 0.00 29.36 4.41
125 126 0.320247 AGCTTCAGGACGAACAGCAG 60.320 55.000 0.00 0.00 29.36 4.24
126 127 1.294659 GCTTCAGGACGAACAGCAGG 61.295 60.000 0.00 0.00 0.00 4.85
127 128 0.034059 CTTCAGGACGAACAGCAGGT 59.966 55.000 0.00 0.00 0.00 4.00
128 129 0.468226 TTCAGGACGAACAGCAGGTT 59.532 50.000 0.00 0.00 44.10 3.50
129 130 0.468226 TCAGGACGAACAGCAGGTTT 59.532 50.000 0.00 0.00 40.63 3.27
130 131 0.588252 CAGGACGAACAGCAGGTTTG 59.412 55.000 6.90 6.90 44.99 2.93
152 153 9.423061 GTTTGCTAACCATTTGATCTATTTTGT 57.577 29.630 0.00 0.00 0.00 2.83
153 154 8.984891 TTGCTAACCATTTGATCTATTTTGTG 57.015 30.769 0.00 0.00 0.00 3.33
154 155 7.035004 TGCTAACCATTTGATCTATTTTGTGC 58.965 34.615 0.00 0.00 0.00 4.57
155 156 7.035004 GCTAACCATTTGATCTATTTTGTGCA 58.965 34.615 0.00 0.00 0.00 4.57
156 157 7.707893 GCTAACCATTTGATCTATTTTGTGCAT 59.292 33.333 0.00 0.00 0.00 3.96
157 158 9.590451 CTAACCATTTGATCTATTTTGTGCATT 57.410 29.630 0.00 0.00 0.00 3.56
158 159 7.837202 ACCATTTGATCTATTTTGTGCATTG 57.163 32.000 0.00 0.00 0.00 2.82
159 160 6.314400 ACCATTTGATCTATTTTGTGCATTGC 59.686 34.615 0.46 0.46 0.00 3.56
160 161 6.314152 CCATTTGATCTATTTTGTGCATTGCA 59.686 34.615 7.38 7.38 35.60 4.08
161 162 6.954616 TTTGATCTATTTTGTGCATTGCAG 57.045 33.333 12.53 0.00 40.08 4.41
162 163 5.001237 TGATCTATTTTGTGCATTGCAGG 57.999 39.130 12.53 0.00 40.08 4.85
163 164 4.463539 TGATCTATTTTGTGCATTGCAGGT 59.536 37.500 12.53 0.00 40.08 4.00
164 165 4.870123 TCTATTTTGTGCATTGCAGGTT 57.130 36.364 12.53 0.00 40.08 3.50
165 166 5.212532 TCTATTTTGTGCATTGCAGGTTT 57.787 34.783 12.53 0.00 40.08 3.27
166 167 4.989797 TCTATTTTGTGCATTGCAGGTTTG 59.010 37.500 12.53 0.07 40.08 2.93
180 181 5.880054 GCAGGTTTGCTACTTAATTCTCA 57.120 39.130 0.00 0.00 46.95 3.27
181 182 6.254281 GCAGGTTTGCTACTTAATTCTCAA 57.746 37.500 0.00 0.00 46.95 3.02
182 183 6.677913 GCAGGTTTGCTACTTAATTCTCAAA 58.322 36.000 0.00 0.00 46.95 2.69
183 184 7.145323 GCAGGTTTGCTACTTAATTCTCAAAA 58.855 34.615 0.00 0.00 46.95 2.44
184 185 7.651704 GCAGGTTTGCTACTTAATTCTCAAAAA 59.348 33.333 0.00 0.00 46.95 1.94
207 208 7.599630 AAAATAAATCATGTGTTGGCATCAC 57.400 32.000 19.32 19.32 36.48 3.06
208 209 3.598019 AAATCATGTGTTGGCATCACC 57.402 42.857 22.27 8.26 35.25 4.02
216 217 4.058434 TGGCATCACCATCCCGTA 57.942 55.556 0.00 0.00 46.36 4.02
217 218 1.829456 TGGCATCACCATCCCGTAG 59.171 57.895 0.00 0.00 46.36 3.51
218 219 0.689412 TGGCATCACCATCCCGTAGA 60.689 55.000 0.00 0.00 46.36 2.59
219 220 0.468226 GGCATCACCATCCCGTAGAA 59.532 55.000 0.00 0.00 38.86 2.10
220 221 1.583054 GCATCACCATCCCGTAGAAC 58.417 55.000 0.00 0.00 0.00 3.01
221 222 1.810412 GCATCACCATCCCGTAGAACC 60.810 57.143 0.00 0.00 0.00 3.62
222 223 1.484653 CATCACCATCCCGTAGAACCA 59.515 52.381 0.00 0.00 0.00 3.67
223 224 0.899720 TCACCATCCCGTAGAACCAC 59.100 55.000 0.00 0.00 0.00 4.16
224 225 0.902531 CACCATCCCGTAGAACCACT 59.097 55.000 0.00 0.00 0.00 4.00
225 226 1.134788 CACCATCCCGTAGAACCACTC 60.135 57.143 0.00 0.00 0.00 3.51
226 227 0.102481 CCATCCCGTAGAACCACTCG 59.898 60.000 0.00 0.00 0.00 4.18
227 228 0.102481 CATCCCGTAGAACCACTCGG 59.898 60.000 0.00 0.00 38.26 4.63
228 229 1.673808 ATCCCGTAGAACCACTCGGC 61.674 60.000 0.00 0.00 37.69 5.54
229 230 2.183555 CCGTAGAACCACTCGGCC 59.816 66.667 0.00 0.00 34.56 6.13
230 231 2.348888 CCGTAGAACCACTCGGCCT 61.349 63.158 0.00 0.00 34.56 5.19
231 232 1.153823 CGTAGAACCACTCGGCCTG 60.154 63.158 0.00 0.00 34.57 4.85
232 233 1.592400 CGTAGAACCACTCGGCCTGA 61.592 60.000 0.00 0.00 34.57 3.86
233 234 0.824759 GTAGAACCACTCGGCCTGAT 59.175 55.000 0.00 0.00 34.57 2.90
234 235 1.112113 TAGAACCACTCGGCCTGATC 58.888 55.000 0.00 0.00 34.57 2.92
235 236 1.153349 GAACCACTCGGCCTGATCC 60.153 63.158 0.00 0.00 34.57 3.36
236 237 1.899437 GAACCACTCGGCCTGATCCA 61.899 60.000 0.00 0.00 34.57 3.41
237 238 1.903877 AACCACTCGGCCTGATCCAG 61.904 60.000 0.00 0.00 34.57 3.86
238 239 2.362369 CCACTCGGCCTGATCCAGT 61.362 63.158 0.00 0.00 0.00 4.00
239 240 1.153489 CACTCGGCCTGATCCAGTG 60.153 63.158 0.00 1.05 32.87 3.66
240 241 1.305297 ACTCGGCCTGATCCAGTGA 60.305 57.895 0.00 0.00 0.00 3.41
241 242 0.689080 ACTCGGCCTGATCCAGTGAT 60.689 55.000 0.00 0.00 0.00 3.06
242 243 0.467384 CTCGGCCTGATCCAGTGATT 59.533 55.000 0.00 0.00 0.00 2.57
243 244 0.911769 TCGGCCTGATCCAGTGATTT 59.088 50.000 0.00 0.00 0.00 2.17
244 245 1.134401 TCGGCCTGATCCAGTGATTTC 60.134 52.381 0.00 0.00 0.00 2.17
245 246 1.407299 CGGCCTGATCCAGTGATTTCA 60.407 52.381 0.00 0.00 0.00 2.69
246 247 2.295885 GGCCTGATCCAGTGATTTCAG 58.704 52.381 0.00 0.93 0.00 3.02
247 248 2.092753 GGCCTGATCCAGTGATTTCAGA 60.093 50.000 14.71 0.00 28.78 3.27
248 249 3.204526 GCCTGATCCAGTGATTTCAGAG 58.795 50.000 14.71 8.59 28.78 3.35
249 250 3.118482 GCCTGATCCAGTGATTTCAGAGA 60.118 47.826 14.71 0.00 28.78 3.10
250 251 4.624843 GCCTGATCCAGTGATTTCAGAGAA 60.625 45.833 14.71 0.00 28.78 2.87
251 252 4.874966 CCTGATCCAGTGATTTCAGAGAAC 59.125 45.833 14.71 0.00 28.78 3.01
252 253 5.485620 CTGATCCAGTGATTTCAGAGAACA 58.514 41.667 9.90 0.00 28.78 3.18
253 254 6.058553 TGATCCAGTGATTTCAGAGAACAT 57.941 37.500 0.00 0.00 0.00 2.71
254 255 6.479006 TGATCCAGTGATTTCAGAGAACATT 58.521 36.000 0.00 0.00 0.00 2.71
255 256 6.944290 TGATCCAGTGATTTCAGAGAACATTT 59.056 34.615 0.00 0.00 0.00 2.32
256 257 8.102676 TGATCCAGTGATTTCAGAGAACATTTA 58.897 33.333 0.00 0.00 0.00 1.40
257 258 7.672983 TCCAGTGATTTCAGAGAACATTTAC 57.327 36.000 0.00 0.00 0.00 2.01
258 259 7.453393 TCCAGTGATTTCAGAGAACATTTACT 58.547 34.615 0.00 0.00 0.00 2.24
259 260 8.593679 TCCAGTGATTTCAGAGAACATTTACTA 58.406 33.333 0.00 0.00 0.00 1.82
260 261 8.660373 CCAGTGATTTCAGAGAACATTTACTAC 58.340 37.037 0.00 0.00 0.00 2.73
261 262 8.376203 CAGTGATTTCAGAGAACATTTACTACG 58.624 37.037 0.00 0.00 0.00 3.51
262 263 8.088981 AGTGATTTCAGAGAACATTTACTACGT 58.911 33.333 0.00 0.00 0.00 3.57
263 264 8.709646 GTGATTTCAGAGAACATTTACTACGTT 58.290 33.333 0.00 0.00 0.00 3.99
264 265 9.268268 TGATTTCAGAGAACATTTACTACGTTT 57.732 29.630 0.00 0.00 0.00 3.60
268 269 8.697846 TCAGAGAACATTTACTACGTTTATGG 57.302 34.615 0.00 0.00 0.00 2.74
269 270 8.525316 TCAGAGAACATTTACTACGTTTATGGA 58.475 33.333 0.00 0.00 0.00 3.41
270 271 9.314321 CAGAGAACATTTACTACGTTTATGGAT 57.686 33.333 0.00 0.00 0.00 3.41
271 272 9.530633 AGAGAACATTTACTACGTTTATGGATC 57.469 33.333 0.00 0.00 0.00 3.36
272 273 9.309516 GAGAACATTTACTACGTTTATGGATCA 57.690 33.333 0.00 0.00 0.00 2.92
273 274 9.095065 AGAACATTTACTACGTTTATGGATCAC 57.905 33.333 0.00 0.00 0.00 3.06
274 275 9.095065 GAACATTTACTACGTTTATGGATCACT 57.905 33.333 0.00 0.00 0.00 3.41
276 277 9.525409 ACATTTACTACGTTTATGGATCACTAC 57.475 33.333 0.00 0.00 0.00 2.73
277 278 9.524106 CATTTACTACGTTTATGGATCACTACA 57.476 33.333 0.00 0.00 0.00 2.74
279 280 9.524106 TTTACTACGTTTATGGATCACTACATG 57.476 33.333 0.00 0.00 0.00 3.21
280 281 7.108841 ACTACGTTTATGGATCACTACATGT 57.891 36.000 2.69 2.69 0.00 3.21
281 282 7.553334 ACTACGTTTATGGATCACTACATGTT 58.447 34.615 2.30 0.00 0.00 2.71
282 283 6.903883 ACGTTTATGGATCACTACATGTTC 57.096 37.500 2.30 0.00 0.00 3.18
283 284 6.640518 ACGTTTATGGATCACTACATGTTCT 58.359 36.000 2.30 0.00 0.00 3.01
284 285 6.535150 ACGTTTATGGATCACTACATGTTCTG 59.465 38.462 2.30 0.00 0.00 3.02
285 286 6.510157 CGTTTATGGATCACTACATGTTCTGC 60.510 42.308 2.30 0.00 0.00 4.26
286 287 4.767578 ATGGATCACTACATGTTCTGCT 57.232 40.909 2.30 0.00 0.00 4.24
287 288 3.865446 TGGATCACTACATGTTCTGCTG 58.135 45.455 2.30 0.00 0.00 4.41
288 289 3.201290 GGATCACTACATGTTCTGCTGG 58.799 50.000 2.30 0.00 0.00 4.85
289 290 3.118629 GGATCACTACATGTTCTGCTGGA 60.119 47.826 2.30 0.00 0.00 3.86
290 291 4.444022 GGATCACTACATGTTCTGCTGGAT 60.444 45.833 2.30 0.00 0.00 3.41
291 292 4.128925 TCACTACATGTTCTGCTGGATC 57.871 45.455 2.30 0.00 0.00 3.36
292 293 3.515104 TCACTACATGTTCTGCTGGATCA 59.485 43.478 2.30 0.00 0.00 2.92
293 294 4.020307 TCACTACATGTTCTGCTGGATCAA 60.020 41.667 2.30 0.00 0.00 2.57
294 295 4.331992 CACTACATGTTCTGCTGGATCAAG 59.668 45.833 2.30 0.00 0.00 3.02
295 296 2.719739 ACATGTTCTGCTGGATCAAGG 58.280 47.619 0.00 0.00 0.00 3.61
296 297 2.040813 ACATGTTCTGCTGGATCAAGGT 59.959 45.455 0.00 0.00 0.00 3.50
297 298 3.264193 ACATGTTCTGCTGGATCAAGGTA 59.736 43.478 0.00 0.00 0.00 3.08
298 299 4.263462 ACATGTTCTGCTGGATCAAGGTAA 60.263 41.667 0.00 0.00 0.00 2.85
299 300 3.942829 TGTTCTGCTGGATCAAGGTAAG 58.057 45.455 0.00 0.00 0.00 2.34
300 301 3.582647 TGTTCTGCTGGATCAAGGTAAGA 59.417 43.478 0.00 0.00 0.00 2.10
301 302 4.225942 TGTTCTGCTGGATCAAGGTAAGAT 59.774 41.667 0.00 0.00 0.00 2.40
302 303 4.679373 TCTGCTGGATCAAGGTAAGATC 57.321 45.455 0.00 0.00 40.86 2.75
303 304 4.033009 TCTGCTGGATCAAGGTAAGATCA 58.967 43.478 0.00 0.00 42.84 2.92
304 305 4.657504 TCTGCTGGATCAAGGTAAGATCAT 59.342 41.667 0.00 0.00 42.84 2.45
305 306 5.131642 TCTGCTGGATCAAGGTAAGATCATT 59.868 40.000 0.00 0.00 42.84 2.57
306 307 5.759059 TGCTGGATCAAGGTAAGATCATTT 58.241 37.500 0.00 0.00 42.84 2.32
307 308 6.189859 TGCTGGATCAAGGTAAGATCATTTT 58.810 36.000 0.00 0.00 42.84 1.82
308 309 6.664816 TGCTGGATCAAGGTAAGATCATTTTT 59.335 34.615 0.00 0.00 42.84 1.94
309 310 7.148018 TGCTGGATCAAGGTAAGATCATTTTTC 60.148 37.037 0.00 0.00 42.84 2.29
310 311 7.148018 GCTGGATCAAGGTAAGATCATTTTTCA 60.148 37.037 0.00 0.00 42.84 2.69
311 312 8.284945 TGGATCAAGGTAAGATCATTTTTCAG 57.715 34.615 0.00 0.00 42.84 3.02
312 313 7.890127 TGGATCAAGGTAAGATCATTTTTCAGT 59.110 33.333 0.00 0.00 42.84 3.41
313 314 9.396022 GGATCAAGGTAAGATCATTTTTCAGTA 57.604 33.333 0.00 0.00 42.84 2.74
316 317 9.010029 TCAAGGTAAGATCATTTTTCAGTAACC 57.990 33.333 0.00 0.00 0.00 2.85
317 318 8.792633 CAAGGTAAGATCATTTTTCAGTAACCA 58.207 33.333 0.00 0.00 0.00 3.67
318 319 9.533831 AAGGTAAGATCATTTTTCAGTAACCAT 57.466 29.630 0.00 0.00 0.00 3.55
319 320 9.533831 AGGTAAGATCATTTTTCAGTAACCATT 57.466 29.630 0.00 0.00 0.00 3.16
330 331 9.658799 TTTTTCAGTAACCATTTCATTTGAACA 57.341 25.926 0.00 0.00 33.13 3.18
331 332 8.641499 TTTCAGTAACCATTTCATTTGAACAC 57.359 30.769 0.00 0.00 33.13 3.32
332 333 6.434596 TCAGTAACCATTTCATTTGAACACG 58.565 36.000 0.00 0.00 33.13 4.49
333 334 5.116983 CAGTAACCATTTCATTTGAACACGC 59.883 40.000 0.00 0.00 33.13 5.34
334 335 3.724508 ACCATTTCATTTGAACACGCA 57.275 38.095 0.00 0.00 33.13 5.24
335 336 4.255833 ACCATTTCATTTGAACACGCAT 57.744 36.364 0.00 0.00 33.13 4.73
336 337 4.236935 ACCATTTCATTTGAACACGCATC 58.763 39.130 0.00 0.00 33.13 3.91
337 338 4.236147 CCATTTCATTTGAACACGCATCA 58.764 39.130 0.00 0.00 33.13 3.07
338 339 4.865925 CCATTTCATTTGAACACGCATCAT 59.134 37.500 0.00 0.00 33.13 2.45
339 340 5.220322 CCATTTCATTTGAACACGCATCATG 60.220 40.000 0.00 0.00 33.13 3.07
340 341 2.866198 TCATTTGAACACGCATCATGC 58.134 42.857 0.00 0.00 40.69 4.06
341 342 2.488937 TCATTTGAACACGCATCATGCT 59.511 40.909 8.30 0.00 42.25 3.79
342 343 3.057386 TCATTTGAACACGCATCATGCTT 60.057 39.130 8.30 0.00 42.25 3.91
343 344 3.367992 TTTGAACACGCATCATGCTTT 57.632 38.095 8.30 0.00 42.25 3.51
344 345 3.367992 TTGAACACGCATCATGCTTTT 57.632 38.095 8.30 0.00 42.25 2.27
345 346 2.932498 TGAACACGCATCATGCTTTTC 58.068 42.857 8.30 7.79 42.25 2.29
346 347 2.253603 GAACACGCATCATGCTTTTCC 58.746 47.619 8.30 0.00 42.25 3.13
347 348 0.168788 ACACGCATCATGCTTTTCCG 59.831 50.000 8.30 0.00 42.25 4.30
348 349 0.168788 CACGCATCATGCTTTTCCGT 59.831 50.000 8.30 0.00 42.25 4.69
349 350 1.396648 CACGCATCATGCTTTTCCGTA 59.603 47.619 8.30 0.00 42.25 4.02
350 351 2.032054 CACGCATCATGCTTTTCCGTAT 59.968 45.455 8.30 0.00 42.25 3.06
351 352 2.682856 ACGCATCATGCTTTTCCGTATT 59.317 40.909 8.30 0.00 42.25 1.89
352 353 3.128589 ACGCATCATGCTTTTCCGTATTT 59.871 39.130 8.30 0.00 42.25 1.40
353 354 4.334203 ACGCATCATGCTTTTCCGTATTTA 59.666 37.500 8.30 0.00 42.25 1.40
354 355 5.163703 ACGCATCATGCTTTTCCGTATTTAA 60.164 36.000 8.30 0.00 42.25 1.52
355 356 5.171337 CGCATCATGCTTTTCCGTATTTAAC 59.829 40.000 8.30 0.00 42.25 2.01
356 357 6.265577 GCATCATGCTTTTCCGTATTTAACT 58.734 36.000 1.02 0.00 40.96 2.24
357 358 6.197096 GCATCATGCTTTTCCGTATTTAACTG 59.803 38.462 1.02 0.00 40.96 3.16
358 359 7.471721 CATCATGCTTTTCCGTATTTAACTGA 58.528 34.615 0.00 0.00 0.00 3.41
359 360 7.441890 TCATGCTTTTCCGTATTTAACTGAA 57.558 32.000 0.00 0.00 30.40 3.02
360 361 7.302524 TCATGCTTTTCCGTATTTAACTGAAC 58.697 34.615 0.00 0.00 31.85 3.18
361 362 6.621316 TGCTTTTCCGTATTTAACTGAACA 57.379 33.333 0.00 0.00 31.85 3.18
362 363 7.209471 TGCTTTTCCGTATTTAACTGAACAT 57.791 32.000 0.00 0.00 31.85 2.71
363 364 7.302524 TGCTTTTCCGTATTTAACTGAACATC 58.697 34.615 0.00 0.00 31.85 3.06
364 365 7.174253 TGCTTTTCCGTATTTAACTGAACATCT 59.826 33.333 0.00 0.00 31.85 2.90
365 366 7.481798 GCTTTTCCGTATTTAACTGAACATCTG 59.518 37.037 0.00 0.00 31.85 2.90
366 367 7.972832 TTTCCGTATTTAACTGAACATCTGT 57.027 32.000 0.00 0.00 31.85 3.41
367 368 7.591006 TTCCGTATTTAACTGAACATCTGTC 57.409 36.000 0.00 0.00 0.00 3.51
368 369 6.693466 TCCGTATTTAACTGAACATCTGTCA 58.307 36.000 0.00 0.00 0.00 3.58
369 370 7.327975 TCCGTATTTAACTGAACATCTGTCAT 58.672 34.615 0.00 0.00 0.00 3.06
370 371 7.277760 TCCGTATTTAACTGAACATCTGTCATG 59.722 37.037 0.00 0.00 0.00 3.07
371 372 7.401860 CGTATTTAACTGAACATCTGTCATGG 58.598 38.462 0.00 0.00 0.00 3.66
372 373 7.064609 CGTATTTAACTGAACATCTGTCATGGT 59.935 37.037 0.00 0.00 0.00 3.55
373 374 6.558771 TTTAACTGAACATCTGTCATGGTG 57.441 37.500 0.00 0.00 0.00 4.17
374 375 3.777106 ACTGAACATCTGTCATGGTGT 57.223 42.857 0.00 0.00 0.00 4.16
375 376 4.890158 ACTGAACATCTGTCATGGTGTA 57.110 40.909 0.00 0.00 0.00 2.90
376 377 5.426689 ACTGAACATCTGTCATGGTGTAT 57.573 39.130 0.00 0.00 0.00 2.29
377 378 6.544928 ACTGAACATCTGTCATGGTGTATA 57.455 37.500 0.00 0.00 0.00 1.47
378 379 7.129457 ACTGAACATCTGTCATGGTGTATAT 57.871 36.000 0.00 0.00 0.00 0.86
379 380 8.250143 ACTGAACATCTGTCATGGTGTATATA 57.750 34.615 0.00 0.00 0.00 0.86
380 381 8.874156 ACTGAACATCTGTCATGGTGTATATAT 58.126 33.333 0.00 0.00 0.00 0.86
381 382 9.716531 CTGAACATCTGTCATGGTGTATATATT 57.283 33.333 0.00 0.00 0.00 1.28
471 472 7.667575 AAAGATAAGGCTAAGAGATGACTCA 57.332 36.000 0.00 0.00 44.79 3.41
472 473 7.854166 AAGATAAGGCTAAGAGATGACTCAT 57.146 36.000 0.00 0.00 44.79 2.90
473 474 7.854166 AGATAAGGCTAAGAGATGACTCATT 57.146 36.000 0.00 0.00 44.79 2.57
474 475 8.948401 AGATAAGGCTAAGAGATGACTCATTA 57.052 34.615 0.00 0.00 44.79 1.90
475 476 9.545928 AGATAAGGCTAAGAGATGACTCATTAT 57.454 33.333 0.00 0.00 44.79 1.28
478 479 8.719645 AAGGCTAAGAGATGACTCATTATAGT 57.280 34.615 0.00 0.00 44.79 2.12
479 480 8.719645 AGGCTAAGAGATGACTCATTATAGTT 57.280 34.615 0.00 0.00 44.79 2.24
480 481 9.153479 AGGCTAAGAGATGACTCATTATAGTTT 57.847 33.333 0.00 0.00 44.79 2.66
481 482 9.202273 GGCTAAGAGATGACTCATTATAGTTTG 57.798 37.037 0.00 0.00 44.79 2.93
482 483 9.757227 GCTAAGAGATGACTCATTATAGTTTGT 57.243 33.333 0.00 0.00 44.79 2.83
550 551 7.072177 ACAACCATTGTTATCGTGTCTTATG 57.928 36.000 0.00 0.00 42.22 1.90
551 552 6.093495 ACAACCATTGTTATCGTGTCTTATGG 59.907 38.462 0.00 0.00 42.22 2.74
552 553 5.123227 ACCATTGTTATCGTGTCTTATGGG 58.877 41.667 0.00 0.00 36.47 4.00
553 554 4.515191 CCATTGTTATCGTGTCTTATGGGG 59.485 45.833 0.00 0.00 0.00 4.96
554 555 3.188159 TGTTATCGTGTCTTATGGGGC 57.812 47.619 0.00 0.00 0.00 5.80
555 556 2.132762 GTTATCGTGTCTTATGGGGCG 58.867 52.381 0.00 0.00 0.00 6.13
556 557 0.032952 TATCGTGTCTTATGGGGCGC 59.967 55.000 0.00 0.00 0.00 6.53
557 558 1.686325 ATCGTGTCTTATGGGGCGCT 61.686 55.000 7.64 0.00 0.00 5.92
558 559 2.173669 CGTGTCTTATGGGGCGCTG 61.174 63.158 7.64 0.00 0.00 5.18
559 560 1.819632 GTGTCTTATGGGGCGCTGG 60.820 63.158 7.64 0.00 0.00 4.85
560 561 2.297895 TGTCTTATGGGGCGCTGGT 61.298 57.895 7.64 0.00 0.00 4.00
561 562 1.523938 GTCTTATGGGGCGCTGGTC 60.524 63.158 7.64 0.00 0.00 4.02
562 563 1.992834 TCTTATGGGGCGCTGGTCA 60.993 57.895 7.64 0.80 0.00 4.02
563 564 1.524621 CTTATGGGGCGCTGGTCAG 60.525 63.158 7.64 0.00 0.00 3.51
564 565 2.257409 CTTATGGGGCGCTGGTCAGT 62.257 60.000 7.64 0.00 0.00 3.41
565 566 2.252072 TTATGGGGCGCTGGTCAGTC 62.252 60.000 7.64 0.00 0.00 3.51
570 571 4.148825 GCGCTGGTCAGTCCGGAT 62.149 66.667 7.81 0.00 45.09 4.18
571 572 2.202797 CGCTGGTCAGTCCGGATG 60.203 66.667 7.81 7.52 45.09 3.51
572 573 2.187946 GCTGGTCAGTCCGGATGG 59.812 66.667 7.81 2.62 45.09 3.51
573 574 2.903357 CTGGTCAGTCCGGATGGG 59.097 66.667 7.81 0.00 45.09 4.00
574 575 1.990060 CTGGTCAGTCCGGATGGGT 60.990 63.158 7.81 0.00 45.09 4.51
575 576 1.537889 TGGTCAGTCCGGATGGGTT 60.538 57.895 7.81 0.00 39.52 4.11
576 577 1.131303 TGGTCAGTCCGGATGGGTTT 61.131 55.000 7.81 0.00 39.52 3.27
577 578 0.676782 GGTCAGTCCGGATGGGTTTG 60.677 60.000 7.81 0.00 37.00 2.93
578 579 0.323629 GTCAGTCCGGATGGGTTTGA 59.676 55.000 7.81 2.55 37.00 2.69
579 580 1.060729 TCAGTCCGGATGGGTTTGAA 58.939 50.000 7.81 0.00 37.00 2.69
580 581 1.003118 TCAGTCCGGATGGGTTTGAAG 59.997 52.381 7.81 0.00 37.00 3.02
581 582 1.064825 AGTCCGGATGGGTTTGAAGT 58.935 50.000 7.81 0.00 37.00 3.01
582 583 1.165270 GTCCGGATGGGTTTGAAGTG 58.835 55.000 7.81 0.00 37.00 3.16
583 584 0.768622 TCCGGATGGGTTTGAAGTGT 59.231 50.000 0.00 0.00 37.00 3.55
584 585 1.165270 CCGGATGGGTTTGAAGTGTC 58.835 55.000 0.00 0.00 0.00 3.67
585 586 1.165270 CGGATGGGTTTGAAGTGTCC 58.835 55.000 0.00 0.00 0.00 4.02
586 587 1.165270 GGATGGGTTTGAAGTGTCCG 58.835 55.000 0.00 0.00 0.00 4.79
587 588 1.271163 GGATGGGTTTGAAGTGTCCGA 60.271 52.381 0.00 0.00 0.00 4.55
588 589 2.618045 GGATGGGTTTGAAGTGTCCGAT 60.618 50.000 0.00 0.00 0.00 4.18
589 590 1.890876 TGGGTTTGAAGTGTCCGATG 58.109 50.000 0.00 0.00 0.00 3.84
590 591 1.165270 GGGTTTGAAGTGTCCGATGG 58.835 55.000 0.00 0.00 0.00 3.51
591 592 1.165270 GGTTTGAAGTGTCCGATGGG 58.835 55.000 0.00 0.00 0.00 4.00
592 593 0.521735 GTTTGAAGTGTCCGATGGGC 59.478 55.000 0.00 0.00 0.00 5.36
593 594 0.608035 TTTGAAGTGTCCGATGGGCC 60.608 55.000 0.00 0.00 0.00 5.80
594 595 1.773856 TTGAAGTGTCCGATGGGCCA 61.774 55.000 9.61 9.61 0.00 5.36
595 596 1.450312 GAAGTGTCCGATGGGCCAG 60.450 63.158 13.78 0.00 0.00 4.85
596 597 2.876368 GAAGTGTCCGATGGGCCAGG 62.876 65.000 13.78 9.21 0.00 4.45
599 600 4.115199 GTCCGATGGGCCAGGCTT 62.115 66.667 13.78 0.00 0.00 4.35
600 601 3.338250 TCCGATGGGCCAGGCTTT 61.338 61.111 13.78 0.00 0.00 3.51
601 602 2.362889 CCGATGGGCCAGGCTTTT 60.363 61.111 13.78 0.00 0.00 2.27
602 603 1.984026 CCGATGGGCCAGGCTTTTT 60.984 57.895 13.78 0.00 0.00 1.94
619 620 2.906691 TTTTAAGGTCCGTCCGTTCA 57.093 45.000 0.00 0.00 41.99 3.18
620 621 2.443887 TTTAAGGTCCGTCCGTTCAG 57.556 50.000 0.00 0.00 41.99 3.02
621 622 0.604578 TTAAGGTCCGTCCGTTCAGG 59.395 55.000 0.00 0.00 41.99 3.86
622 623 0.540365 TAAGGTCCGTCCGTTCAGGT 60.540 55.000 0.00 0.00 41.99 4.00
623 624 0.540365 AAGGTCCGTCCGTTCAGGTA 60.540 55.000 0.00 0.00 41.99 3.08
624 625 0.324091 AGGTCCGTCCGTTCAGGTAT 60.324 55.000 0.00 0.00 41.99 2.73
625 626 0.533951 GGTCCGTCCGTTCAGGTATT 59.466 55.000 0.00 0.00 41.99 1.89
626 627 1.066645 GGTCCGTCCGTTCAGGTATTT 60.067 52.381 0.00 0.00 41.99 1.40
627 628 1.997606 GTCCGTCCGTTCAGGTATTTG 59.002 52.381 0.00 0.00 41.99 2.32
628 629 1.894466 TCCGTCCGTTCAGGTATTTGA 59.106 47.619 0.00 0.00 41.99 2.69
629 630 2.094390 TCCGTCCGTTCAGGTATTTGAG 60.094 50.000 0.00 0.00 41.99 3.02
630 631 2.094390 CCGTCCGTTCAGGTATTTGAGA 60.094 50.000 0.00 0.00 41.99 3.27
631 632 2.921754 CGTCCGTTCAGGTATTTGAGAC 59.078 50.000 0.00 0.00 41.99 3.36
632 633 3.259902 GTCCGTTCAGGTATTTGAGACC 58.740 50.000 0.00 0.00 41.99 3.85
633 634 2.094390 TCCGTTCAGGTATTTGAGACCG 60.094 50.000 0.00 0.00 42.21 4.79
634 635 2.268298 CGTTCAGGTATTTGAGACCGG 58.732 52.381 0.00 0.00 42.21 5.28
642 643 4.533311 AGGTATTTGAGACCGGTTTCCTAA 59.467 41.667 21.46 15.54 42.21 2.69
661 662 4.080299 CCTAAGGTTAGGGTTTCAGAGCAT 60.080 45.833 7.80 0.00 45.29 3.79
673 674 0.244721 CAGAGCATGAGTGACGACCA 59.755 55.000 0.00 0.00 0.00 4.02
724 725 2.000701 TGAATCAGGGGCCGATGGT 61.001 57.895 7.44 0.00 0.00 3.55
793 794 3.927481 GAGGGAGCAAGGGTGGTGC 62.927 68.421 0.00 0.00 42.36 5.01
894 895 9.462174 GTGAATTGTCAAATCTGTGATTTTGTA 57.538 29.630 2.43 0.00 34.87 2.41
906 907 9.927668 ATCTGTGATTTTGTAATTTTGTTAGGG 57.072 29.630 0.00 0.00 0.00 3.53
907 908 8.919145 TCTGTGATTTTGTAATTTTGTTAGGGT 58.081 29.630 0.00 0.00 0.00 4.34
908 909 9.191995 CTGTGATTTTGTAATTTTGTTAGGGTC 57.808 33.333 0.00 0.00 0.00 4.46
909 910 7.863375 TGTGATTTTGTAATTTTGTTAGGGTCG 59.137 33.333 0.00 0.00 0.00 4.79
910 911 8.077386 GTGATTTTGTAATTTTGTTAGGGTCGA 58.923 33.333 0.00 0.00 0.00 4.20
911 912 8.077386 TGATTTTGTAATTTTGTTAGGGTCGAC 58.923 33.333 7.13 7.13 0.00 4.20
912 913 7.571080 TTTTGTAATTTTGTTAGGGTCGACT 57.429 32.000 16.46 0.00 0.00 4.18
949 950 3.162154 CCTCCCGCCCCTTAGGTC 61.162 72.222 0.00 0.00 38.26 3.85
1008 1026 0.389817 TGTTCGACGGAATGCCTCAG 60.390 55.000 0.00 0.00 34.05 3.35
1023 1041 0.252479 CTCAGACAAGCAGGGCAGAT 59.748 55.000 0.00 0.00 0.00 2.90
1042 1060 4.034510 CAGATAAATCGTCAAAGTCCTGCC 59.965 45.833 0.00 0.00 0.00 4.85
1044 1062 2.496899 AATCGTCAAAGTCCTGCCAT 57.503 45.000 0.00 0.00 0.00 4.40
1054 1072 4.864334 CCTGCCATGAGGACCGGC 62.864 72.222 0.00 1.36 46.43 6.13
1086 1104 2.430921 GACGACGTCCTGCACCAG 60.431 66.667 17.25 0.00 0.00 4.00
1164 1182 1.004277 TGGCGCTACCTTTGGAAATCT 59.996 47.619 7.64 0.00 40.22 2.40
1190 1208 0.366871 CGTCTTCGCATCAACGGAAG 59.633 55.000 0.00 0.00 0.00 3.46
1191 1209 0.095417 GTCTTCGCATCAACGGAAGC 59.905 55.000 0.00 0.00 34.50 3.86
1197 1215 3.327404 ATCAACGGAAGCGGGGGT 61.327 61.111 0.00 0.00 0.00 4.95
1198 1216 3.622060 ATCAACGGAAGCGGGGGTG 62.622 63.158 0.00 0.00 0.00 4.61
1199 1217 4.323477 CAACGGAAGCGGGGGTGA 62.323 66.667 0.00 0.00 0.00 4.02
1204 1222 3.637273 GAAGCGGGGGTGAGTGGT 61.637 66.667 0.00 0.00 0.00 4.16
1249 1422 1.027357 CAAGTTTGTGAGCTGCCTGT 58.973 50.000 0.00 0.00 0.00 4.00
1313 1501 7.411264 CGAGATCGAGTATGCTAATCATTTTGG 60.411 40.741 0.00 0.00 43.02 3.28
1664 1873 5.686159 AATCTTGTTTCTCTGCAACTCAG 57.314 39.130 0.00 0.00 44.21 3.35
1677 1886 3.072944 GCAACTCAGATCATATGGAGGC 58.927 50.000 2.13 0.00 0.00 4.70
1747 1956 1.116308 TGTTGAAGTCTGGTCGGTGA 58.884 50.000 0.00 0.00 0.00 4.02
1814 2023 4.769688 TGTCTAGATTGCTGTGGTAATGG 58.230 43.478 0.00 0.00 0.00 3.16
1815 2024 4.469586 TGTCTAGATTGCTGTGGTAATGGA 59.530 41.667 0.00 0.00 0.00 3.41
1816 2025 4.811557 GTCTAGATTGCTGTGGTAATGGAC 59.188 45.833 0.00 0.00 0.00 4.02
1861 2079 3.247648 TCTGTCTCGTGCTAAAAACTTGC 59.752 43.478 0.00 0.00 0.00 4.01
1894 2123 6.777580 AGCTCATCCGGAAATGGTAAATTTAT 59.222 34.615 9.01 0.00 0.00 1.40
2327 2616 6.805713 ACCAGTTCATTGTGGACTTTAAAAG 58.194 36.000 0.00 0.00 37.27 2.27
2496 2790 1.533731 GAACATTCGCCGGTTCTTGAA 59.466 47.619 1.90 0.29 40.12 2.69
2797 3097 8.819974 CATTTGGCATTGAAATTACTATCCAAC 58.180 33.333 0.00 0.00 31.64 3.77
2974 3286 8.702819 GTCAACTAATTAACTCCCACTAGGTAT 58.297 37.037 0.00 0.00 36.75 2.73
2981 3293 7.504926 TTAACTCCCACTAGGTATGAAATGT 57.495 36.000 0.00 0.00 36.75 2.71
3084 3396 6.895898 AGTTTATATCAGAAGCATTGCATCG 58.104 36.000 11.91 5.53 31.18 3.84
3104 3416 6.640907 GCATCGATACATACACATTCAGTACA 59.359 38.462 0.00 0.00 0.00 2.90
3119 3431 4.513442 TCAGTACATAGCAATTGGTCCAC 58.487 43.478 14.50 7.90 0.00 4.02
3185 3497 2.501723 AGTACATAGCAGTTGGTCCAGG 59.498 50.000 0.00 0.00 0.00 4.45
3278 3590 2.094894 GTCGTGGCATGTCTTGATCAAG 59.905 50.000 26.56 26.56 39.71 3.02
3279 3591 1.202110 CGTGGCATGTCTTGATCAAGC 60.202 52.381 27.45 21.97 38.28 4.01
3280 3592 1.089112 TGGCATGTCTTGATCAAGCG 58.911 50.000 27.45 16.96 38.28 4.68
3281 3593 1.338960 TGGCATGTCTTGATCAAGCGA 60.339 47.619 27.45 17.32 38.28 4.93
3282 3594 1.329906 GGCATGTCTTGATCAAGCGAG 59.670 52.381 27.45 17.94 38.28 5.03
3283 3595 2.274437 GCATGTCTTGATCAAGCGAGA 58.726 47.619 27.45 12.90 38.28 4.04
3284 3596 2.871022 GCATGTCTTGATCAAGCGAGAT 59.129 45.455 27.45 14.48 38.28 2.75
3285 3597 3.303197 GCATGTCTTGATCAAGCGAGATG 60.303 47.826 27.45 23.86 38.28 2.90
3286 3598 2.274437 TGTCTTGATCAAGCGAGATGC 58.726 47.619 27.45 12.66 46.98 3.91
3426 3739 2.051804 GACGCCTGCCATCCGATTTG 62.052 60.000 0.00 0.00 0.00 2.32
3599 3922 3.380637 TGGTAGACCTCGAAAGCATAGAC 59.619 47.826 0.00 0.00 36.82 2.59
3803 4143 9.289782 ACAAAAGATAGCTCAACTAAGATTGTT 57.710 29.630 0.00 0.00 33.57 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.065088 TGTGAATGCAGTGAACTTACTCC 58.935 43.478 0.00 0.00 0.00 3.85
1 2 5.869753 ATGTGAATGCAGTGAACTTACTC 57.130 39.130 0.00 0.00 0.00 2.59
2 3 6.369890 CAGTATGTGAATGCAGTGAACTTACT 59.630 38.462 14.39 14.39 34.11 2.24
3 4 6.402550 CCAGTATGTGAATGCAGTGAACTTAC 60.403 42.308 0.00 3.13 0.00 2.34
4 5 5.643348 CCAGTATGTGAATGCAGTGAACTTA 59.357 40.000 0.00 0.00 0.00 2.24
5 6 4.456911 CCAGTATGTGAATGCAGTGAACTT 59.543 41.667 0.00 0.00 0.00 2.66
6 7 4.005650 CCAGTATGTGAATGCAGTGAACT 58.994 43.478 0.00 0.00 0.00 3.01
7 8 4.002982 TCCAGTATGTGAATGCAGTGAAC 58.997 43.478 0.00 0.00 0.00 3.18
8 9 4.020307 TCTCCAGTATGTGAATGCAGTGAA 60.020 41.667 0.00 0.00 0.00 3.18
9 10 3.515104 TCTCCAGTATGTGAATGCAGTGA 59.485 43.478 0.00 0.00 0.00 3.41
10 11 3.865446 TCTCCAGTATGTGAATGCAGTG 58.135 45.455 0.00 0.00 0.00 3.66
11 12 3.517100 ACTCTCCAGTATGTGAATGCAGT 59.483 43.478 0.00 0.00 0.00 4.40
12 13 4.134379 ACTCTCCAGTATGTGAATGCAG 57.866 45.455 0.00 0.00 0.00 4.41
13 14 5.675684 TTACTCTCCAGTATGTGAATGCA 57.324 39.130 0.00 0.00 34.92 3.96
14 15 6.985188 TTTTACTCTCCAGTATGTGAATGC 57.015 37.500 0.00 0.00 34.92 3.56
24 25 9.588096 AAGGTTTTCATTATTTTACTCTCCAGT 57.412 29.630 0.00 0.00 36.55 4.00
26 27 9.020731 GGAAGGTTTTCATTATTTTACTCTCCA 57.979 33.333 0.00 0.00 34.90 3.86
27 28 9.244292 AGGAAGGTTTTCATTATTTTACTCTCC 57.756 33.333 0.00 0.00 34.90 3.71
34 35 8.923270 TCACTCAAGGAAGGTTTTCATTATTTT 58.077 29.630 0.00 0.00 35.31 1.82
35 36 8.477419 TCACTCAAGGAAGGTTTTCATTATTT 57.523 30.769 0.00 0.00 35.31 1.40
36 37 8.526147 CATCACTCAAGGAAGGTTTTCATTATT 58.474 33.333 0.00 0.00 35.31 1.40
37 38 7.890127 TCATCACTCAAGGAAGGTTTTCATTAT 59.110 33.333 0.00 0.00 35.31 1.28
38 39 7.174946 GTCATCACTCAAGGAAGGTTTTCATTA 59.825 37.037 0.00 0.00 35.31 1.90
39 40 6.015940 GTCATCACTCAAGGAAGGTTTTCATT 60.016 38.462 0.00 0.00 37.78 2.57
40 41 5.474876 GTCATCACTCAAGGAAGGTTTTCAT 59.525 40.000 0.00 0.00 34.90 2.57
41 42 4.821805 GTCATCACTCAAGGAAGGTTTTCA 59.178 41.667 0.00 0.00 34.90 2.69
42 43 5.049129 CAGTCATCACTCAAGGAAGGTTTTC 60.049 44.000 0.00 0.00 0.00 2.29
43 44 4.823989 CAGTCATCACTCAAGGAAGGTTTT 59.176 41.667 0.00 0.00 0.00 2.43
44 45 4.103153 TCAGTCATCACTCAAGGAAGGTTT 59.897 41.667 0.00 0.00 0.00 3.27
45 46 3.648067 TCAGTCATCACTCAAGGAAGGTT 59.352 43.478 0.00 0.00 0.00 3.50
46 47 3.242867 TCAGTCATCACTCAAGGAAGGT 58.757 45.455 0.00 0.00 0.00 3.50
47 48 3.969287 TCAGTCATCACTCAAGGAAGG 57.031 47.619 0.00 0.00 0.00 3.46
48 49 5.082251 TGATCAGTCATCACTCAAGGAAG 57.918 43.478 0.00 0.00 36.51 3.46
58 59 9.371136 GTACTAAAATCTTGTGATCAGTCATCA 57.629 33.333 0.00 0.00 39.39 3.07
59 60 9.371136 TGTACTAAAATCTTGTGATCAGTCATC 57.629 33.333 0.00 0.00 36.60 2.92
60 61 9.896645 ATGTACTAAAATCTTGTGATCAGTCAT 57.103 29.630 0.00 0.00 36.60 3.06
89 90 9.444600 TCCTGAAGCTAGTTTTATCGTATTTTT 57.555 29.630 0.00 0.00 0.00 1.94
90 91 8.880750 GTCCTGAAGCTAGTTTTATCGTATTTT 58.119 33.333 0.00 0.00 0.00 1.82
91 92 7.222224 CGTCCTGAAGCTAGTTTTATCGTATTT 59.778 37.037 0.00 0.00 0.00 1.40
92 93 6.696148 CGTCCTGAAGCTAGTTTTATCGTATT 59.304 38.462 0.00 0.00 0.00 1.89
93 94 6.039047 TCGTCCTGAAGCTAGTTTTATCGTAT 59.961 38.462 0.00 0.00 0.00 3.06
94 95 5.355071 TCGTCCTGAAGCTAGTTTTATCGTA 59.645 40.000 0.00 0.00 0.00 3.43
95 96 4.157289 TCGTCCTGAAGCTAGTTTTATCGT 59.843 41.667 0.00 0.00 0.00 3.73
96 97 4.669318 TCGTCCTGAAGCTAGTTTTATCG 58.331 43.478 0.00 0.00 0.00 2.92
97 98 5.867716 TGTTCGTCCTGAAGCTAGTTTTATC 59.132 40.000 0.00 0.00 37.23 1.75
98 99 5.790593 TGTTCGTCCTGAAGCTAGTTTTAT 58.209 37.500 0.00 0.00 37.23 1.40
99 100 5.204409 TGTTCGTCCTGAAGCTAGTTTTA 57.796 39.130 0.00 0.00 37.23 1.52
100 101 4.058817 CTGTTCGTCCTGAAGCTAGTTTT 58.941 43.478 0.00 0.00 37.23 2.43
101 102 3.654414 CTGTTCGTCCTGAAGCTAGTTT 58.346 45.455 0.00 0.00 37.23 2.66
102 103 2.610727 GCTGTTCGTCCTGAAGCTAGTT 60.611 50.000 0.00 0.00 37.23 2.24
103 104 1.067495 GCTGTTCGTCCTGAAGCTAGT 60.067 52.381 0.00 0.00 37.23 2.57
104 105 1.067565 TGCTGTTCGTCCTGAAGCTAG 60.068 52.381 0.00 0.00 37.23 3.42
105 106 0.966179 TGCTGTTCGTCCTGAAGCTA 59.034 50.000 0.00 0.00 37.23 3.32
106 107 0.320247 CTGCTGTTCGTCCTGAAGCT 60.320 55.000 0.00 0.00 37.23 3.74
107 108 1.294659 CCTGCTGTTCGTCCTGAAGC 61.295 60.000 0.00 0.00 37.23 3.86
108 109 0.034059 ACCTGCTGTTCGTCCTGAAG 59.966 55.000 0.00 0.00 37.23 3.02
109 110 0.468226 AACCTGCTGTTCGTCCTGAA 59.532 50.000 0.00 0.00 28.45 3.02
110 111 0.468226 AAACCTGCTGTTCGTCCTGA 59.532 50.000 0.00 0.00 35.67 3.86
111 112 0.588252 CAAACCTGCTGTTCGTCCTG 59.412 55.000 0.00 0.00 35.67 3.86
112 113 1.166531 GCAAACCTGCTGTTCGTCCT 61.167 55.000 0.00 0.00 45.74 3.85
113 114 1.282875 GCAAACCTGCTGTTCGTCC 59.717 57.895 0.00 0.00 45.74 4.79
114 115 4.922791 GCAAACCTGCTGTTCGTC 57.077 55.556 0.00 0.00 45.74 4.20
126 127 9.423061 ACAAAATAGATCAAATGGTTAGCAAAC 57.577 29.630 0.00 0.00 34.66 2.93
127 128 9.421806 CACAAAATAGATCAAATGGTTAGCAAA 57.578 29.630 0.00 0.00 0.00 3.68
128 129 7.545265 GCACAAAATAGATCAAATGGTTAGCAA 59.455 33.333 0.00 0.00 0.00 3.91
129 130 7.035004 GCACAAAATAGATCAAATGGTTAGCA 58.965 34.615 0.00 0.00 0.00 3.49
130 131 7.035004 TGCACAAAATAGATCAAATGGTTAGC 58.965 34.615 0.00 0.00 0.00 3.09
131 132 9.590451 AATGCACAAAATAGATCAAATGGTTAG 57.410 29.630 0.00 0.00 0.00 2.34
132 133 9.368674 CAATGCACAAAATAGATCAAATGGTTA 57.631 29.630 0.00 0.00 0.00 2.85
133 134 7.148373 GCAATGCACAAAATAGATCAAATGGTT 60.148 33.333 0.00 0.00 0.00 3.67
134 135 6.314400 GCAATGCACAAAATAGATCAAATGGT 59.686 34.615 0.00 0.00 0.00 3.55
135 136 6.314152 TGCAATGCACAAAATAGATCAAATGG 59.686 34.615 2.72 0.00 31.71 3.16
136 137 7.297229 TGCAATGCACAAAATAGATCAAATG 57.703 32.000 2.72 0.00 31.71 2.32
137 138 6.537301 CCTGCAATGCACAAAATAGATCAAAT 59.463 34.615 2.72 0.00 33.79 2.32
138 139 5.870433 CCTGCAATGCACAAAATAGATCAAA 59.130 36.000 2.72 0.00 33.79 2.69
139 140 5.047164 ACCTGCAATGCACAAAATAGATCAA 60.047 36.000 2.72 0.00 33.79 2.57
140 141 4.463539 ACCTGCAATGCACAAAATAGATCA 59.536 37.500 2.72 0.00 33.79 2.92
141 142 5.002464 ACCTGCAATGCACAAAATAGATC 57.998 39.130 2.72 0.00 33.79 2.75
142 143 5.410355 AACCTGCAATGCACAAAATAGAT 57.590 34.783 2.72 0.00 33.79 1.98
143 144 4.870123 AACCTGCAATGCACAAAATAGA 57.130 36.364 2.72 0.00 33.79 1.98
144 145 5.272167 CAAACCTGCAATGCACAAAATAG 57.728 39.130 2.72 0.00 33.79 1.73
182 183 7.119553 GGTGATGCCAACACATGATTTATTTTT 59.880 33.333 7.43 0.00 39.65 1.94
183 184 6.594937 GGTGATGCCAACACATGATTTATTTT 59.405 34.615 7.43 0.00 39.65 1.82
184 185 6.108015 GGTGATGCCAACACATGATTTATTT 58.892 36.000 7.43 0.00 39.65 1.40
185 186 5.187381 TGGTGATGCCAACACATGATTTATT 59.813 36.000 7.43 0.00 45.94 1.40
186 187 4.710865 TGGTGATGCCAACACATGATTTAT 59.289 37.500 7.43 0.00 45.94 1.40
187 188 4.085009 TGGTGATGCCAACACATGATTTA 58.915 39.130 7.43 0.00 45.94 1.40
188 189 2.898612 TGGTGATGCCAACACATGATTT 59.101 40.909 7.43 0.00 45.94 2.17
189 190 2.527497 TGGTGATGCCAACACATGATT 58.473 42.857 7.43 0.00 45.94 2.57
190 191 2.219080 TGGTGATGCCAACACATGAT 57.781 45.000 7.43 0.00 45.94 2.45
191 192 3.741707 TGGTGATGCCAACACATGA 57.258 47.368 7.43 0.00 45.94 3.07
200 201 0.468226 TTCTACGGGATGGTGATGCC 59.532 55.000 0.00 0.00 36.72 4.40
201 202 1.583054 GTTCTACGGGATGGTGATGC 58.417 55.000 0.00 0.00 0.00 3.91
202 203 1.484653 TGGTTCTACGGGATGGTGATG 59.515 52.381 0.00 0.00 0.00 3.07
203 204 1.485066 GTGGTTCTACGGGATGGTGAT 59.515 52.381 0.00 0.00 0.00 3.06
204 205 0.899720 GTGGTTCTACGGGATGGTGA 59.100 55.000 0.00 0.00 0.00 4.02
205 206 0.902531 AGTGGTTCTACGGGATGGTG 59.097 55.000 0.00 0.00 0.00 4.17
206 207 1.192428 GAGTGGTTCTACGGGATGGT 58.808 55.000 0.00 0.00 0.00 3.55
207 208 0.102481 CGAGTGGTTCTACGGGATGG 59.898 60.000 0.00 0.00 0.00 3.51
208 209 0.102481 CCGAGTGGTTCTACGGGATG 59.898 60.000 0.00 0.00 41.41 3.51
209 210 1.673808 GCCGAGTGGTTCTACGGGAT 61.674 60.000 0.00 0.00 44.61 3.85
210 211 2.345760 GCCGAGTGGTTCTACGGGA 61.346 63.158 0.00 0.00 44.61 5.14
211 212 2.183555 GCCGAGTGGTTCTACGGG 59.816 66.667 0.00 0.00 44.61 5.28
212 213 2.183555 GGCCGAGTGGTTCTACGG 59.816 66.667 0.00 0.00 46.74 4.02
213 214 1.153823 CAGGCCGAGTGGTTCTACG 60.154 63.158 0.00 0.00 37.67 3.51
214 215 0.824759 ATCAGGCCGAGTGGTTCTAC 59.175 55.000 0.00 0.00 37.67 2.59
215 216 1.112113 GATCAGGCCGAGTGGTTCTA 58.888 55.000 0.00 0.00 37.67 2.10
216 217 1.617947 GGATCAGGCCGAGTGGTTCT 61.618 60.000 0.00 0.00 37.67 3.01
217 218 1.153349 GGATCAGGCCGAGTGGTTC 60.153 63.158 0.00 0.00 37.67 3.62
218 219 1.903877 CTGGATCAGGCCGAGTGGTT 61.904 60.000 0.00 0.00 37.67 3.67
219 220 2.284625 TGGATCAGGCCGAGTGGT 60.285 61.111 0.00 0.00 37.67 4.16
220 221 2.362369 ACTGGATCAGGCCGAGTGG 61.362 63.158 0.00 0.00 35.51 4.00
221 222 1.153489 CACTGGATCAGGCCGAGTG 60.153 63.158 0.00 0.36 35.51 3.51
222 223 0.689080 ATCACTGGATCAGGCCGAGT 60.689 55.000 0.00 0.00 35.51 4.18
223 224 0.467384 AATCACTGGATCAGGCCGAG 59.533 55.000 0.00 0.00 35.51 4.63
224 225 0.911769 AAATCACTGGATCAGGCCGA 59.088 50.000 0.00 0.00 35.51 5.54
225 226 1.303309 GAAATCACTGGATCAGGCCG 58.697 55.000 0.00 0.00 35.51 6.13
226 227 2.092753 TCTGAAATCACTGGATCAGGCC 60.093 50.000 0.00 0.00 35.51 5.19
227 228 3.118482 TCTCTGAAATCACTGGATCAGGC 60.118 47.826 0.00 0.00 35.51 4.85
228 229 4.750021 TCTCTGAAATCACTGGATCAGG 57.250 45.455 0.00 0.00 35.51 3.86
229 230 5.485620 TGTTCTCTGAAATCACTGGATCAG 58.514 41.667 0.00 0.00 37.52 2.90
230 231 5.488262 TGTTCTCTGAAATCACTGGATCA 57.512 39.130 0.00 0.00 31.88 2.92
231 232 6.998968 AATGTTCTCTGAAATCACTGGATC 57.001 37.500 0.00 0.00 31.88 3.36
232 233 8.105829 AGTAAATGTTCTCTGAAATCACTGGAT 58.894 33.333 0.00 0.00 34.43 3.41
233 234 7.453393 AGTAAATGTTCTCTGAAATCACTGGA 58.547 34.615 0.00 0.00 0.00 3.86
234 235 7.678947 AGTAAATGTTCTCTGAAATCACTGG 57.321 36.000 0.00 0.00 0.00 4.00
235 236 8.376203 CGTAGTAAATGTTCTCTGAAATCACTG 58.624 37.037 0.00 0.00 0.00 3.66
236 237 8.088981 ACGTAGTAAATGTTCTCTGAAATCACT 58.911 33.333 0.00 0.00 41.94 3.41
237 238 8.240883 ACGTAGTAAATGTTCTCTGAAATCAC 57.759 34.615 0.00 0.00 41.94 3.06
238 239 8.827177 AACGTAGTAAATGTTCTCTGAAATCA 57.173 30.769 0.00 0.00 45.00 2.57
242 243 9.146984 CCATAAACGTAGTAAATGTTCTCTGAA 57.853 33.333 0.00 0.00 45.00 3.02
243 244 8.525316 TCCATAAACGTAGTAAATGTTCTCTGA 58.475 33.333 0.00 0.00 45.00 3.27
244 245 8.697846 TCCATAAACGTAGTAAATGTTCTCTG 57.302 34.615 0.00 0.00 45.00 3.35
245 246 9.530633 GATCCATAAACGTAGTAAATGTTCTCT 57.469 33.333 0.00 0.00 45.00 3.10
246 247 9.309516 TGATCCATAAACGTAGTAAATGTTCTC 57.690 33.333 0.00 0.00 45.00 2.87
247 248 9.095065 GTGATCCATAAACGTAGTAAATGTTCT 57.905 33.333 0.00 0.00 45.00 3.01
248 249 9.095065 AGTGATCCATAAACGTAGTAAATGTTC 57.905 33.333 0.00 0.00 45.00 3.18
250 251 9.525409 GTAGTGATCCATAAACGTAGTAAATGT 57.475 33.333 0.00 0.00 45.00 2.71
251 252 9.524106 TGTAGTGATCCATAAACGTAGTAAATG 57.476 33.333 0.00 0.00 45.00 2.32
253 254 9.524106 CATGTAGTGATCCATAAACGTAGTAAA 57.476 33.333 0.00 0.00 45.00 2.01
254 255 8.689061 ACATGTAGTGATCCATAAACGTAGTAA 58.311 33.333 0.00 0.00 45.00 2.24
255 256 8.229253 ACATGTAGTGATCCATAAACGTAGTA 57.771 34.615 0.00 0.00 45.00 1.82
257 258 7.921214 AGAACATGTAGTGATCCATAAACGTAG 59.079 37.037 0.00 0.00 30.42 3.51
258 259 7.704899 CAGAACATGTAGTGATCCATAAACGTA 59.295 37.037 0.00 0.00 30.42 3.57
259 260 6.535150 CAGAACATGTAGTGATCCATAAACGT 59.465 38.462 0.00 0.00 30.42 3.99
260 261 6.510157 GCAGAACATGTAGTGATCCATAAACG 60.510 42.308 10.77 0.00 30.42 3.60
261 262 6.540189 AGCAGAACATGTAGTGATCCATAAAC 59.460 38.462 10.77 0.00 30.42 2.01
262 263 6.539826 CAGCAGAACATGTAGTGATCCATAAA 59.460 38.462 10.77 0.00 30.42 1.40
263 264 6.051074 CAGCAGAACATGTAGTGATCCATAA 58.949 40.000 10.77 0.00 30.42 1.90
264 265 5.453762 CCAGCAGAACATGTAGTGATCCATA 60.454 44.000 10.77 0.00 30.42 2.74
265 266 4.449131 CAGCAGAACATGTAGTGATCCAT 58.551 43.478 10.77 0.00 30.42 3.41
266 267 3.369787 CCAGCAGAACATGTAGTGATCCA 60.370 47.826 10.77 0.00 30.42 3.41
267 268 3.118629 TCCAGCAGAACATGTAGTGATCC 60.119 47.826 10.77 0.00 30.42 3.36
268 269 4.128925 TCCAGCAGAACATGTAGTGATC 57.871 45.455 10.77 0.00 0.00 2.92
269 270 4.162888 TGATCCAGCAGAACATGTAGTGAT 59.837 41.667 10.77 2.33 0.00 3.06
270 271 3.515104 TGATCCAGCAGAACATGTAGTGA 59.485 43.478 10.77 0.00 0.00 3.41
271 272 3.865446 TGATCCAGCAGAACATGTAGTG 58.135 45.455 0.00 0.27 0.00 2.74
272 273 4.511527 CTTGATCCAGCAGAACATGTAGT 58.488 43.478 0.00 0.00 0.00 2.73
273 274 3.875727 CCTTGATCCAGCAGAACATGTAG 59.124 47.826 0.00 0.00 0.00 2.74
274 275 3.264193 ACCTTGATCCAGCAGAACATGTA 59.736 43.478 0.00 0.00 0.00 2.29
275 276 2.040813 ACCTTGATCCAGCAGAACATGT 59.959 45.455 0.00 0.00 0.00 3.21
276 277 2.719739 ACCTTGATCCAGCAGAACATG 58.280 47.619 0.00 0.00 0.00 3.21
277 278 4.225942 TCTTACCTTGATCCAGCAGAACAT 59.774 41.667 0.00 0.00 0.00 2.71
278 279 3.582647 TCTTACCTTGATCCAGCAGAACA 59.417 43.478 0.00 0.00 0.00 3.18
279 280 4.207891 TCTTACCTTGATCCAGCAGAAC 57.792 45.455 0.00 0.00 0.00 3.01
280 281 4.471025 TGATCTTACCTTGATCCAGCAGAA 59.529 41.667 0.00 0.00 39.48 3.02
281 282 4.033009 TGATCTTACCTTGATCCAGCAGA 58.967 43.478 0.00 0.00 39.48 4.26
282 283 4.412796 TGATCTTACCTTGATCCAGCAG 57.587 45.455 0.00 0.00 39.48 4.24
283 284 5.378230 AATGATCTTACCTTGATCCAGCA 57.622 39.130 0.00 0.00 39.48 4.41
284 285 6.705863 AAAATGATCTTACCTTGATCCAGC 57.294 37.500 0.00 0.00 39.48 4.85
285 286 8.284945 TGAAAAATGATCTTACCTTGATCCAG 57.715 34.615 0.00 0.00 39.48 3.86
286 287 7.890127 ACTGAAAAATGATCTTACCTTGATCCA 59.110 33.333 0.00 0.00 39.48 3.41
287 288 8.286191 ACTGAAAAATGATCTTACCTTGATCC 57.714 34.615 0.00 0.00 39.48 3.36
290 291 9.010029 GGTTACTGAAAAATGATCTTACCTTGA 57.990 33.333 0.00 0.00 0.00 3.02
291 292 8.792633 TGGTTACTGAAAAATGATCTTACCTTG 58.207 33.333 0.00 0.00 0.00 3.61
292 293 8.934023 TGGTTACTGAAAAATGATCTTACCTT 57.066 30.769 0.00 0.00 0.00 3.50
293 294 9.533831 AATGGTTACTGAAAAATGATCTTACCT 57.466 29.630 0.00 0.00 0.00 3.08
304 305 9.658799 TGTTCAAATGAAATGGTTACTGAAAAA 57.341 25.926 0.00 0.00 35.58 1.94
305 306 9.092876 GTGTTCAAATGAAATGGTTACTGAAAA 57.907 29.630 0.00 0.00 35.58 2.29
306 307 7.433719 CGTGTTCAAATGAAATGGTTACTGAAA 59.566 33.333 0.00 0.00 35.58 2.69
307 308 6.915300 CGTGTTCAAATGAAATGGTTACTGAA 59.085 34.615 0.00 0.00 35.58 3.02
308 309 6.434596 CGTGTTCAAATGAAATGGTTACTGA 58.565 36.000 0.00 0.00 35.58 3.41
309 310 5.116983 GCGTGTTCAAATGAAATGGTTACTG 59.883 40.000 0.00 0.00 35.58 2.74
310 311 5.219633 GCGTGTTCAAATGAAATGGTTACT 58.780 37.500 0.00 0.00 35.58 2.24
311 312 4.979197 TGCGTGTTCAAATGAAATGGTTAC 59.021 37.500 0.00 0.00 35.58 2.50
312 313 5.188327 TGCGTGTTCAAATGAAATGGTTA 57.812 34.783 0.00 0.00 35.58 2.85
313 314 4.052159 TGCGTGTTCAAATGAAATGGTT 57.948 36.364 0.00 0.00 35.58 3.67
314 315 3.724508 TGCGTGTTCAAATGAAATGGT 57.275 38.095 0.00 0.00 35.58 3.55
315 316 4.236147 TGATGCGTGTTCAAATGAAATGG 58.764 39.130 0.00 0.00 35.58 3.16
316 317 5.722863 GCATGATGCGTGTTCAAATGAAATG 60.723 40.000 0.00 0.00 32.28 2.32
317 318 4.327898 GCATGATGCGTGTTCAAATGAAAT 59.672 37.500 0.00 0.00 32.28 2.17
318 319 3.674281 GCATGATGCGTGTTCAAATGAAA 59.326 39.130 0.00 0.00 32.28 2.69
319 320 3.244156 GCATGATGCGTGTTCAAATGAA 58.756 40.909 0.00 0.00 31.71 2.57
320 321 2.866198 GCATGATGCGTGTTCAAATGA 58.134 42.857 0.00 0.00 31.71 2.57
332 333 6.197096 CAGTTAAATACGGAAAAGCATGATGC 59.803 38.462 9.89 9.89 45.46 3.91
333 334 7.471721 TCAGTTAAATACGGAAAAGCATGATG 58.528 34.615 0.00 0.00 0.00 3.07
334 335 7.624360 TCAGTTAAATACGGAAAAGCATGAT 57.376 32.000 0.00 0.00 0.00 2.45
335 336 7.041030 TGTTCAGTTAAATACGGAAAAGCATGA 60.041 33.333 0.00 0.00 41.55 3.07
336 337 7.081349 TGTTCAGTTAAATACGGAAAAGCATG 58.919 34.615 0.00 0.00 41.55 4.06
337 338 7.209471 TGTTCAGTTAAATACGGAAAAGCAT 57.791 32.000 0.00 0.00 41.55 3.79
338 339 6.621316 TGTTCAGTTAAATACGGAAAAGCA 57.379 33.333 0.00 0.00 41.55 3.91
339 340 7.481798 CAGATGTTCAGTTAAATACGGAAAAGC 59.518 37.037 0.00 0.00 41.55 3.51
340 341 8.504005 ACAGATGTTCAGTTAAATACGGAAAAG 58.496 33.333 0.00 0.00 41.55 2.27
341 342 8.385898 ACAGATGTTCAGTTAAATACGGAAAA 57.614 30.769 0.00 0.00 41.55 2.29
342 343 7.658167 TGACAGATGTTCAGTTAAATACGGAAA 59.342 33.333 0.00 0.00 41.55 3.13
343 344 7.156000 TGACAGATGTTCAGTTAAATACGGAA 58.844 34.615 0.00 0.00 38.39 4.30
344 345 6.693466 TGACAGATGTTCAGTTAAATACGGA 58.307 36.000 0.00 0.00 0.00 4.69
345 346 6.961359 TGACAGATGTTCAGTTAAATACGG 57.039 37.500 0.00 0.00 0.00 4.02
346 347 7.064609 ACCATGACAGATGTTCAGTTAAATACG 59.935 37.037 0.00 0.00 0.00 3.06
347 348 8.177663 CACCATGACAGATGTTCAGTTAAATAC 58.822 37.037 0.00 0.00 0.00 1.89
348 349 7.882791 ACACCATGACAGATGTTCAGTTAAATA 59.117 33.333 0.00 0.00 0.00 1.40
349 350 6.716628 ACACCATGACAGATGTTCAGTTAAAT 59.283 34.615 0.00 0.00 0.00 1.40
350 351 6.061441 ACACCATGACAGATGTTCAGTTAAA 58.939 36.000 0.00 0.00 0.00 1.52
351 352 5.620206 ACACCATGACAGATGTTCAGTTAA 58.380 37.500 0.00 0.00 0.00 2.01
352 353 5.227569 ACACCATGACAGATGTTCAGTTA 57.772 39.130 0.00 0.00 0.00 2.24
353 354 4.090761 ACACCATGACAGATGTTCAGTT 57.909 40.909 0.00 0.00 0.00 3.16
354 355 3.777106 ACACCATGACAGATGTTCAGT 57.223 42.857 0.00 0.00 0.00 3.41
355 356 9.716531 AATATATACACCATGACAGATGTTCAG 57.283 33.333 0.00 0.00 0.00 3.02
445 446 9.201989 TGAGTCATCTCTTAGCCTTATCTTTAA 57.798 33.333 0.00 0.00 40.98 1.52
446 447 8.768501 TGAGTCATCTCTTAGCCTTATCTTTA 57.231 34.615 0.00 0.00 40.98 1.85
447 448 7.667575 TGAGTCATCTCTTAGCCTTATCTTT 57.332 36.000 0.00 0.00 40.98 2.52
448 449 7.854166 ATGAGTCATCTCTTAGCCTTATCTT 57.146 36.000 0.00 0.00 40.98 2.40
449 450 7.854166 AATGAGTCATCTCTTAGCCTTATCT 57.146 36.000 5.98 0.00 40.98 1.98
452 453 9.815306 ACTATAATGAGTCATCTCTTAGCCTTA 57.185 33.333 5.98 0.00 40.98 2.69
453 454 8.719645 ACTATAATGAGTCATCTCTTAGCCTT 57.280 34.615 5.98 0.00 40.98 4.35
454 455 8.719645 AACTATAATGAGTCATCTCTTAGCCT 57.280 34.615 5.98 0.00 40.98 4.58
455 456 9.202273 CAAACTATAATGAGTCATCTCTTAGCC 57.798 37.037 5.98 0.00 40.98 3.93
456 457 9.757227 ACAAACTATAATGAGTCATCTCTTAGC 57.243 33.333 5.98 0.00 40.98 3.09
527 528 6.458206 CCCATAAGACACGATAACAATGGTTG 60.458 42.308 0.00 0.00 37.88 3.77
528 529 5.588648 CCCATAAGACACGATAACAATGGTT 59.411 40.000 0.00 0.00 41.06 3.67
529 530 5.123227 CCCATAAGACACGATAACAATGGT 58.877 41.667 0.00 0.00 32.49 3.55
530 531 4.515191 CCCCATAAGACACGATAACAATGG 59.485 45.833 0.00 0.00 33.86 3.16
531 532 4.024048 GCCCCATAAGACACGATAACAATG 60.024 45.833 0.00 0.00 0.00 2.82
532 533 4.134563 GCCCCATAAGACACGATAACAAT 58.865 43.478 0.00 0.00 0.00 2.71
533 534 3.537580 GCCCCATAAGACACGATAACAA 58.462 45.455 0.00 0.00 0.00 2.83
534 535 2.482316 CGCCCCATAAGACACGATAACA 60.482 50.000 0.00 0.00 0.00 2.41
535 536 2.132762 CGCCCCATAAGACACGATAAC 58.867 52.381 0.00 0.00 0.00 1.89
536 537 1.539496 GCGCCCCATAAGACACGATAA 60.539 52.381 0.00 0.00 0.00 1.75
537 538 0.032952 GCGCCCCATAAGACACGATA 59.967 55.000 0.00 0.00 0.00 2.92
538 539 1.227556 GCGCCCCATAAGACACGAT 60.228 57.895 0.00 0.00 0.00 3.73
539 540 2.185867 GCGCCCCATAAGACACGA 59.814 61.111 0.00 0.00 0.00 4.35
540 541 2.173669 CAGCGCCCCATAAGACACG 61.174 63.158 2.29 0.00 0.00 4.49
541 542 1.819632 CCAGCGCCCCATAAGACAC 60.820 63.158 2.29 0.00 0.00 3.67
542 543 2.252072 GACCAGCGCCCCATAAGACA 62.252 60.000 2.29 0.00 0.00 3.41
543 544 1.523938 GACCAGCGCCCCATAAGAC 60.524 63.158 2.29 0.00 0.00 3.01
544 545 1.971505 CTGACCAGCGCCCCATAAGA 61.972 60.000 2.29 0.00 0.00 2.10
545 546 1.524621 CTGACCAGCGCCCCATAAG 60.525 63.158 2.29 0.00 0.00 1.73
546 547 2.252072 GACTGACCAGCGCCCCATAA 62.252 60.000 2.29 0.00 0.00 1.90
547 548 2.687200 ACTGACCAGCGCCCCATA 60.687 61.111 2.29 0.00 0.00 2.74
548 549 4.101448 GACTGACCAGCGCCCCAT 62.101 66.667 2.29 0.00 0.00 4.00
553 554 4.148825 ATCCGGACTGACCAGCGC 62.149 66.667 6.12 0.00 38.90 5.92
554 555 2.202797 CATCCGGACTGACCAGCG 60.203 66.667 6.12 0.00 38.90 5.18
555 556 2.187946 CCATCCGGACTGACCAGC 59.812 66.667 6.12 0.00 38.90 4.85
556 557 1.553690 AACCCATCCGGACTGACCAG 61.554 60.000 6.12 0.00 38.90 4.00
557 558 1.131303 AAACCCATCCGGACTGACCA 61.131 55.000 6.12 0.00 38.90 4.02
558 559 0.676782 CAAACCCATCCGGACTGACC 60.677 60.000 6.12 0.00 34.64 4.02
559 560 0.323629 TCAAACCCATCCGGACTGAC 59.676 55.000 6.12 0.00 34.64 3.51
560 561 1.003118 CTTCAAACCCATCCGGACTGA 59.997 52.381 6.12 0.00 34.64 3.41
561 562 1.271379 ACTTCAAACCCATCCGGACTG 60.271 52.381 6.12 6.60 34.64 3.51
562 563 1.064825 ACTTCAAACCCATCCGGACT 58.935 50.000 6.12 0.00 34.64 3.85
563 564 1.165270 CACTTCAAACCCATCCGGAC 58.835 55.000 6.12 0.00 34.64 4.79
564 565 0.768622 ACACTTCAAACCCATCCGGA 59.231 50.000 6.61 6.61 34.64 5.14
565 566 1.165270 GACACTTCAAACCCATCCGG 58.835 55.000 0.00 0.00 37.81 5.14
566 567 1.165270 GGACACTTCAAACCCATCCG 58.835 55.000 0.00 0.00 0.00 4.18
567 568 1.165270 CGGACACTTCAAACCCATCC 58.835 55.000 0.00 0.00 0.00 3.51
568 569 2.178912 TCGGACACTTCAAACCCATC 57.821 50.000 0.00 0.00 0.00 3.51
569 570 2.436417 CATCGGACACTTCAAACCCAT 58.564 47.619 0.00 0.00 0.00 4.00
570 571 1.544537 CCATCGGACACTTCAAACCCA 60.545 52.381 0.00 0.00 0.00 4.51
571 572 1.165270 CCATCGGACACTTCAAACCC 58.835 55.000 0.00 0.00 0.00 4.11
572 573 1.165270 CCCATCGGACACTTCAAACC 58.835 55.000 0.00 0.00 0.00 3.27
573 574 0.521735 GCCCATCGGACACTTCAAAC 59.478 55.000 0.00 0.00 0.00 2.93
574 575 0.608035 GGCCCATCGGACACTTCAAA 60.608 55.000 0.00 0.00 36.99 2.69
575 576 1.002624 GGCCCATCGGACACTTCAA 60.003 57.895 0.00 0.00 36.99 2.69
576 577 2.184020 CTGGCCCATCGGACACTTCA 62.184 60.000 0.00 0.00 44.91 3.02
577 578 1.450312 CTGGCCCATCGGACACTTC 60.450 63.158 0.00 0.00 44.91 3.01
578 579 2.671070 CTGGCCCATCGGACACTT 59.329 61.111 0.00 0.00 44.91 3.16
579 580 3.402681 CCTGGCCCATCGGACACT 61.403 66.667 0.00 0.00 44.91 3.55
582 583 3.645268 AAAGCCTGGCCCATCGGAC 62.645 63.158 16.57 0.00 37.90 4.79
583 584 2.439553 AAAAAGCCTGGCCCATCGGA 62.440 55.000 16.57 0.00 0.00 4.55
584 585 1.984026 AAAAAGCCTGGCCCATCGG 60.984 57.895 16.57 0.00 0.00 4.18
585 586 3.698765 AAAAAGCCTGGCCCATCG 58.301 55.556 16.57 0.00 0.00 3.84
599 600 3.132925 CTGAACGGACGGACCTTAAAAA 58.867 45.455 0.00 0.00 36.31 1.94
600 601 2.548493 CCTGAACGGACGGACCTTAAAA 60.548 50.000 0.00 0.00 36.31 1.52
601 602 1.001181 CCTGAACGGACGGACCTTAAA 59.999 52.381 0.00 0.00 36.31 1.52
602 603 0.604578 CCTGAACGGACGGACCTTAA 59.395 55.000 0.00 0.00 36.31 1.85
603 604 0.540365 ACCTGAACGGACGGACCTTA 60.540 55.000 0.00 0.00 36.31 2.69
604 605 0.540365 TACCTGAACGGACGGACCTT 60.540 55.000 0.00 0.00 36.31 3.50
605 606 0.324091 ATACCTGAACGGACGGACCT 60.324 55.000 0.00 0.00 36.31 3.85
606 607 0.533951 AATACCTGAACGGACGGACC 59.466 55.000 0.00 0.00 36.31 4.46
607 608 1.997606 CAAATACCTGAACGGACGGAC 59.002 52.381 0.00 0.00 36.31 4.79
608 609 1.894466 TCAAATACCTGAACGGACGGA 59.106 47.619 0.00 0.00 36.31 4.69
609 610 2.094390 TCTCAAATACCTGAACGGACGG 60.094 50.000 0.00 0.00 36.31 4.79
610 611 2.921754 GTCTCAAATACCTGAACGGACG 59.078 50.000 0.00 0.00 36.31 4.79
611 612 3.259902 GGTCTCAAATACCTGAACGGAC 58.740 50.000 0.00 0.00 36.31 4.79
612 613 2.094390 CGGTCTCAAATACCTGAACGGA 60.094 50.000 0.00 0.00 36.18 4.69
613 614 2.268298 CGGTCTCAAATACCTGAACGG 58.732 52.381 0.00 0.00 36.18 4.44
614 615 2.268298 CCGGTCTCAAATACCTGAACG 58.732 52.381 0.00 0.00 39.08 3.95
615 616 3.329929 ACCGGTCTCAAATACCTGAAC 57.670 47.619 0.00 0.00 34.66 3.18
616 617 4.320870 GAAACCGGTCTCAAATACCTGAA 58.679 43.478 8.04 0.00 34.66 3.02
617 618 3.307199 GGAAACCGGTCTCAAATACCTGA 60.307 47.826 8.04 0.00 34.66 3.86
618 619 3.007635 GGAAACCGGTCTCAAATACCTG 58.992 50.000 8.04 0.00 34.66 4.00
619 620 2.910977 AGGAAACCGGTCTCAAATACCT 59.089 45.455 8.04 5.33 34.66 3.08
620 621 3.345508 AGGAAACCGGTCTCAAATACC 57.654 47.619 8.04 2.94 0.00 2.73
621 622 4.874396 CCTTAGGAAACCGGTCTCAAATAC 59.126 45.833 8.04 0.00 0.00 1.89
622 623 4.533311 ACCTTAGGAAACCGGTCTCAAATA 59.467 41.667 8.04 0.00 0.00 1.40
623 624 3.329814 ACCTTAGGAAACCGGTCTCAAAT 59.670 43.478 8.04 0.00 0.00 2.32
624 625 2.707257 ACCTTAGGAAACCGGTCTCAAA 59.293 45.455 8.04 0.56 0.00 2.69
625 626 2.332117 ACCTTAGGAAACCGGTCTCAA 58.668 47.619 8.04 0.00 0.00 3.02
626 627 2.019807 ACCTTAGGAAACCGGTCTCA 57.980 50.000 8.04 0.00 0.00 3.27
627 628 4.120792 CTAACCTTAGGAAACCGGTCTC 57.879 50.000 8.04 2.16 0.00 3.36
642 643 2.912956 TCATGCTCTGAAACCCTAACCT 59.087 45.455 0.00 0.00 0.00 3.50
661 662 0.242825 GAATCGGTGGTCGTCACTCA 59.757 55.000 10.39 0.68 45.38 3.41
724 725 0.538584 AGGAGATCAGCACATCGCAA 59.461 50.000 0.00 0.00 46.13 4.85
793 794 1.450312 GGTGAGATGGCCGGACAAG 60.450 63.158 17.77 0.00 0.00 3.16
795 796 3.770040 CGGTGAGATGGCCGGACA 61.770 66.667 15.46 15.46 43.85 4.02
894 895 6.534079 CGAAGATAGTCGACCCTAACAAAATT 59.466 38.462 13.01 0.00 43.86 1.82
896 897 5.047802 ACGAAGATAGTCGACCCTAACAAAA 60.048 40.000 13.01 0.00 43.86 2.44
897 898 4.460382 ACGAAGATAGTCGACCCTAACAAA 59.540 41.667 13.01 0.00 43.86 2.83
898 899 4.012374 ACGAAGATAGTCGACCCTAACAA 58.988 43.478 13.01 0.00 43.86 2.83
900 901 4.208074 GACGAAGATAGTCGACCCTAAC 57.792 50.000 13.01 0.00 43.86 2.34
909 910 2.610374 AGCAGAGACGACGAAGATAGTC 59.390 50.000 0.00 0.00 35.41 2.59
910 911 2.353269 CAGCAGAGACGACGAAGATAGT 59.647 50.000 0.00 0.00 0.00 2.12
911 912 2.852901 GCAGCAGAGACGACGAAGATAG 60.853 54.545 0.00 0.00 0.00 2.08
912 913 1.064208 GCAGCAGAGACGACGAAGATA 59.936 52.381 0.00 0.00 0.00 1.98
949 950 4.078516 GGGAACACGAGGGGGACG 62.079 72.222 0.00 0.00 0.00 4.79
1008 1026 2.289002 CGATTTATCTGCCCTGCTTGTC 59.711 50.000 0.00 0.00 0.00 3.18
1023 1041 3.410631 TGGCAGGACTTTGACGATTTA 57.589 42.857 0.00 0.00 0.00 1.40
1042 1060 2.202987 GCTGAGCCGGTCCTCATG 60.203 66.667 11.61 7.81 40.77 3.07
1086 1104 1.676967 CTGCAGGAAGCCAAGGACC 60.677 63.158 5.57 0.00 44.83 4.46
1187 1205 3.637273 ACCACTCACCCCCGCTTC 61.637 66.667 0.00 0.00 0.00 3.86
1193 1211 4.995058 TCCCCCACCACTCACCCC 62.995 72.222 0.00 0.00 0.00 4.95
1197 1215 3.249189 GTGCTCCCCCACCACTCA 61.249 66.667 0.00 0.00 0.00 3.41
1198 1216 2.930562 AGTGCTCCCCCACCACTC 60.931 66.667 0.00 0.00 34.99 3.51
1199 1217 3.252284 CAGTGCTCCCCCACCACT 61.252 66.667 0.00 0.00 40.22 4.00
1204 1222 1.990160 AAAACGTCAGTGCTCCCCCA 61.990 55.000 0.00 0.00 0.00 4.96
1249 1422 1.544825 CCAGGGTCTCGGAGAAGCAA 61.545 60.000 9.72 0.00 34.09 3.91
1313 1501 8.837788 TGTTGATATCCAAGTATGATCATCAC 57.162 34.615 12.53 9.05 35.03 3.06
1664 1873 2.290577 GGGGTTCTGCCTCCATATGATC 60.291 54.545 3.65 0.00 37.43 2.92
1677 1886 2.162408 GCTTTCGAGAAATGGGGTTCTG 59.838 50.000 0.00 0.00 37.98 3.02
1861 2079 3.459232 TTCCGGATGAGCTATCAACTG 57.541 47.619 4.15 0.00 39.39 3.16
1923 2154 9.332502 GAGACTATTGTAGAGATCAGAACACTA 57.667 37.037 0.00 0.00 0.00 2.74
2080 2324 4.916041 ATTGGGTCAGATCTCAAAGTGA 57.084 40.909 0.00 0.00 0.00 3.41
2135 2379 9.948964 CATGAACATGGAGACTTAATGGATATA 57.051 33.333 6.87 0.00 35.24 0.86
2327 2616 8.228464 GCAAAACAGTTACAGTTAAGGATCTAC 58.772 37.037 0.00 0.00 0.00 2.59
2496 2790 7.285401 ACCTTACACAATTGAAGTGTCAGATTT 59.715 33.333 13.59 0.00 46.57 2.17
2714 3014 5.377358 CATCAACGTCTTCACATTTCACTC 58.623 41.667 0.00 0.00 0.00 3.51
2797 3097 1.620819 CTCCATCTATCCCTTGGTCCG 59.379 57.143 0.00 0.00 0.00 4.79
2981 3293 6.979817 GCAATGCTTCAATGATTGTATTACCA 59.020 34.615 4.93 0.00 31.03 3.25
3084 3396 9.476202 TTGCTATGTACTGAATGTGTATGTATC 57.524 33.333 0.00 0.00 0.00 2.24
3104 3416 3.417101 TGTTTCGTGGACCAATTGCTAT 58.583 40.909 0.00 0.00 0.00 2.97
3119 3431 3.769536 ACTGAAGCCTTTTGTTGTTTCG 58.230 40.909 0.00 0.00 0.00 3.46
3185 3497 6.613755 TGGACTAAAGTCTTTTGTAGTTGC 57.386 37.500 11.63 0.97 44.20 4.17
3278 3590 1.422388 TATCTCGCATTGCATCTCGC 58.578 50.000 9.69 0.00 42.89 5.03
3279 3591 5.768333 TTATTATCTCGCATTGCATCTCG 57.232 39.130 9.69 0.00 0.00 4.04
3280 3592 6.148480 AGGTTTATTATCTCGCATTGCATCTC 59.852 38.462 9.69 0.00 0.00 2.75
3281 3593 6.000219 AGGTTTATTATCTCGCATTGCATCT 59.000 36.000 9.69 0.00 0.00 2.90
3282 3594 6.246420 AGGTTTATTATCTCGCATTGCATC 57.754 37.500 9.69 0.00 0.00 3.91
3283 3595 6.936900 AGTAGGTTTATTATCTCGCATTGCAT 59.063 34.615 9.69 0.00 0.00 3.96
3284 3596 6.288294 AGTAGGTTTATTATCTCGCATTGCA 58.712 36.000 9.69 0.00 0.00 4.08
3285 3597 6.787085 AGTAGGTTTATTATCTCGCATTGC 57.213 37.500 0.00 0.00 0.00 3.56
3286 3598 9.477484 ACTAAGTAGGTTTATTATCTCGCATTG 57.523 33.333 0.00 0.00 0.00 2.82
3287 3599 9.477484 CACTAAGTAGGTTTATTATCTCGCATT 57.523 33.333 0.00 0.00 0.00 3.56
3288 3600 8.088981 CCACTAAGTAGGTTTATTATCTCGCAT 58.911 37.037 0.00 0.00 0.00 4.73
3289 3601 7.069085 ACCACTAAGTAGGTTTATTATCTCGCA 59.931 37.037 0.00 0.00 33.39 5.10
3426 3739 0.652592 AGATATCGCAACACGCAAGC 59.347 50.000 0.00 0.00 42.60 4.01
3599 3922 8.553459 AGTGACATGACTAAGTAATTTTCTGG 57.447 34.615 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.