Multiple sequence alignment - TraesCS6A01G043700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G043700 chr6A 100.000 5258 0 0 1 5258 22815025 22820282 0.000000e+00 9710.0
1 TraesCS6A01G043700 chr6A 86.911 3713 437 36 647 4318 23444446 23440742 0.000000e+00 4119.0
2 TraesCS6A01G043700 chr6A 84.117 3274 468 38 926 4171 22690823 22694072 0.000000e+00 3118.0
3 TraesCS6A01G043700 chr6A 88.168 524 44 12 15 527 23445291 23444775 4.500000e-170 608.0
4 TraesCS6A01G043700 chr6A 87.140 451 46 6 914 1360 22826154 22826596 7.860000e-138 501.0
5 TraesCS6A01G043700 chr6A 84.685 333 46 4 1000 1328 23028157 23028488 1.410000e-85 327.0
6 TraesCS6A01G043700 chr6A 97.273 110 2 1 529 637 23444668 23444559 8.990000e-43 185.0
7 TraesCS6A01G043700 chr6A 100.000 45 0 0 593 637 27148136 27148092 3.370000e-12 84.2
8 TraesCS6A01G043700 chr6D 88.400 3543 350 26 647 4180 24349167 24345677 0.000000e+00 4209.0
9 TraesCS6A01G043700 chr6D 88.327 3538 350 28 644 4171 24390157 24393641 0.000000e+00 4187.0
10 TraesCS6A01G043700 chr6D 84.643 3373 420 52 984 4315 24429069 24432384 0.000000e+00 3269.0
11 TraesCS6A01G043700 chr6D 90.719 2155 175 20 2027 4166 24353392 24351248 0.000000e+00 2848.0
12 TraesCS6A01G043700 chr6D 83.809 3051 427 37 1147 4171 24225995 24229004 0.000000e+00 2835.0
13 TraesCS6A01G043700 chr6D 87.117 2352 275 20 1855 4186 24364541 24362198 0.000000e+00 2639.0
14 TraesCS6A01G043700 chr6D 86.017 2310 290 13 1880 4181 24403007 24405291 0.000000e+00 2446.0
15 TraesCS6A01G043700 chr6D 87.262 1782 187 24 2571 4318 24339996 24338221 0.000000e+00 1997.0
16 TraesCS6A01G043700 chr6D 88.296 1162 123 8 647 1804 24358462 24357310 0.000000e+00 1380.0
17 TraesCS6A01G043700 chr6D 84.000 550 51 18 15 540 24389506 24390042 1.320000e-135 494.0
18 TraesCS6A01G043700 chr6D 91.481 270 7 5 2 255 24359242 24358973 1.800000e-94 357.0
19 TraesCS6A01G043700 chr6D 97.778 90 1 1 548 637 24358634 24358546 2.540000e-33 154.0
20 TraesCS6A01G043700 chr6D 94.253 87 4 1 548 633 24349585 24349499 1.190000e-26 132.0
21 TraesCS6A01G043700 chr6D 94.286 70 3 1 688 757 24225569 24225637 7.200000e-19 106.0
22 TraesCS6A01G043700 chrUn 82.298 3011 482 42 945 3921 18013539 18016532 0.000000e+00 2560.0
23 TraesCS6A01G043700 chrUn 84.685 333 46 4 1000 1328 284472727 284472396 1.410000e-85 327.0
24 TraesCS6A01G043700 chr6B 87.332 1113 112 6 643 1749 39754483 39755572 0.000000e+00 1247.0
25 TraesCS6A01G043700 chr6B 87.994 658 42 15 15 637 39753716 39754371 0.000000e+00 743.0
26 TraesCS6A01G043700 chr6B 86.297 613 71 8 926 1530 39193132 39193739 0.000000e+00 654.0
27 TraesCS6A01G043700 chr6B 93.496 123 7 1 390 511 39343922 39343800 1.160000e-41 182.0
28 TraesCS6A01G043700 chr7B 75.190 923 170 34 4315 5194 94408359 94409265 1.070000e-101 381.0
29 TraesCS6A01G043700 chr3D 77.368 623 103 26 4336 4934 51712068 51711460 8.440000e-88 335.0
30 TraesCS6A01G043700 chr5D 76.586 662 114 29 4315 4958 9128300 9128938 5.080000e-85 326.0
31 TraesCS6A01G043700 chr5D 73.961 722 133 31 4326 5029 250585043 250584359 1.890000e-59 241.0
32 TraesCS6A01G043700 chr7D 75.524 715 136 30 4318 5004 431249987 431250690 1.100000e-81 315.0
33 TraesCS6A01G043700 chr4A 75.000 660 124 29 4314 4954 481488025 481487388 3.120000e-67 267.0
34 TraesCS6A01G043700 chr2D 74.775 666 122 31 4314 4958 327844165 327844805 1.880000e-64 257.0
35 TraesCS6A01G043700 chr7A 73.973 657 117 29 4316 4954 24532511 24533131 3.190000e-52 217.0
36 TraesCS6A01G043700 chr2B 75.758 396 83 10 4633 5020 210699593 210699983 2.500000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G043700 chr6A 22815025 22820282 5257 False 9710.000000 9710 100.000000 1 5258 1 chr6A.!!$F2 5257
1 TraesCS6A01G043700 chr6A 22690823 22694072 3249 False 3118.000000 3118 84.117000 926 4171 1 chr6A.!!$F1 3245
2 TraesCS6A01G043700 chr6A 23440742 23445291 4549 True 1637.333333 4119 90.784000 15 4318 3 chr6A.!!$R2 4303
3 TraesCS6A01G043700 chr6D 24429069 24432384 3315 False 3269.000000 3269 84.643000 984 4315 1 chr6D.!!$F2 3331
4 TraesCS6A01G043700 chr6D 24403007 24405291 2284 False 2446.000000 2446 86.017000 1880 4181 1 chr6D.!!$F1 2301
5 TraesCS6A01G043700 chr6D 24389506 24393641 4135 False 2340.500000 4187 86.163500 15 4171 2 chr6D.!!$F4 4156
6 TraesCS6A01G043700 chr6D 24338221 24339996 1775 True 1997.000000 1997 87.262000 2571 4318 1 chr6D.!!$R1 1747
7 TraesCS6A01G043700 chr6D 24345677 24364541 18864 True 1674.142857 4209 91.149143 2 4186 7 chr6D.!!$R2 4184
8 TraesCS6A01G043700 chr6D 24225569 24229004 3435 False 1470.500000 2835 89.047500 688 4171 2 chr6D.!!$F3 3483
9 TraesCS6A01G043700 chrUn 18013539 18016532 2993 False 2560.000000 2560 82.298000 945 3921 1 chrUn.!!$F1 2976
10 TraesCS6A01G043700 chr6B 39753716 39755572 1856 False 995.000000 1247 87.663000 15 1749 2 chr6B.!!$F2 1734
11 TraesCS6A01G043700 chr6B 39193132 39193739 607 False 654.000000 654 86.297000 926 1530 1 chr6B.!!$F1 604
12 TraesCS6A01G043700 chr7B 94408359 94409265 906 False 381.000000 381 75.190000 4315 5194 1 chr7B.!!$F1 879
13 TraesCS6A01G043700 chr3D 51711460 51712068 608 True 335.000000 335 77.368000 4336 4934 1 chr3D.!!$R1 598
14 TraesCS6A01G043700 chr5D 9128300 9128938 638 False 326.000000 326 76.586000 4315 4958 1 chr5D.!!$F1 643
15 TraesCS6A01G043700 chr5D 250584359 250585043 684 True 241.000000 241 73.961000 4326 5029 1 chr5D.!!$R1 703
16 TraesCS6A01G043700 chr7D 431249987 431250690 703 False 315.000000 315 75.524000 4318 5004 1 chr7D.!!$F1 686
17 TraesCS6A01G043700 chr4A 481487388 481488025 637 True 267.000000 267 75.000000 4314 4954 1 chr4A.!!$R1 640
18 TraesCS6A01G043700 chr2D 327844165 327844805 640 False 257.000000 257 74.775000 4314 4958 1 chr2D.!!$F1 644
19 TraesCS6A01G043700 chr7A 24532511 24533131 620 False 217.000000 217 73.973000 4316 4954 1 chr7A.!!$F1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 5538 0.455295 CTCACTCTCTCGCCGTGTTC 60.455 60.000 0.00 0.00 0.00 3.18 F
321 5653 1.149174 AGACAGCCAACACCCACAG 59.851 57.895 0.00 0.00 0.00 3.66 F
1301 7047 0.107214 CTCCGAGGCCCTTATTGCAA 60.107 55.000 0.00 0.00 0.00 4.08 F
1970 7719 1.212688 TGTGGGCATGATACCTTCCAG 59.787 52.381 0.00 0.00 0.00 3.86 F
2953 8704 0.179051 GCTTCTCCAGAGATGCCCAG 60.179 60.000 19.62 6.61 46.66 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 6928 0.537371 AAAGGAGGTTTGCAGGGTCG 60.537 55.000 0.00 0.0 0.00 4.79 R
2237 7986 1.069049 CAAGTTTGTTGGAGCCAAGGG 59.931 52.381 1.41 0.0 36.52 3.95 R
2580 8330 0.738975 CCATTGCCACTGCTCTCATG 59.261 55.000 0.00 0.0 38.71 3.07 R
3709 13230 0.528466 TCATCGCTTGCATCTCCGTC 60.528 55.000 0.00 0.0 0.00 4.79 R
4386 19540 0.179045 ATTATGCAGAGGTCGGGTGC 60.179 55.000 0.00 0.0 37.73 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 5473 2.266055 CCCTCGAGGTCACAAGGC 59.734 66.667 29.25 0.00 0.00 4.35
170 5495 3.141488 CCTCTCCGTCCTCCACCG 61.141 72.222 0.00 0.00 0.00 4.94
213 5538 0.455295 CTCACTCTCTCGCCGTGTTC 60.455 60.000 0.00 0.00 0.00 3.18
264 5593 2.945008 CTCGAGCAAATGGCCATAAGAA 59.055 45.455 21.15 0.25 46.50 2.52
305 5637 1.629043 ACGCAGGTTAGTTCTCCAGA 58.371 50.000 0.00 0.00 0.00 3.86
319 5651 1.898574 CCAGACAGCCAACACCCAC 60.899 63.158 0.00 0.00 0.00 4.61
321 5653 1.149174 AGACAGCCAACACCCACAG 59.851 57.895 0.00 0.00 0.00 3.66
322 5654 1.152963 GACAGCCAACACCCACAGT 60.153 57.895 0.00 0.00 0.00 3.55
410 5743 3.693085 CGATGGATGGGGATTCATCATTC 59.307 47.826 7.08 2.93 43.82 2.67
418 5751 4.079615 TGGGGATTCATCATTCACTCACAT 60.080 41.667 0.00 0.00 0.00 3.21
512 5875 5.008019 CCTTTGTAGTGGGATTCATCATTCG 59.992 44.000 0.00 0.00 0.00 3.34
527 5890 7.144722 TCATCATTCGCATCCCAAATATTAC 57.855 36.000 0.00 0.00 0.00 1.89
637 6106 4.576463 CCACCAGAGCTAACATAAACATCC 59.424 45.833 0.00 0.00 0.00 3.51
638 6107 4.576463 CACCAGAGCTAACATAAACATCCC 59.424 45.833 0.00 0.00 0.00 3.85
639 6108 4.227300 ACCAGAGCTAACATAAACATCCCA 59.773 41.667 0.00 0.00 0.00 4.37
641 6110 5.652014 CCAGAGCTAACATAAACATCCCAAA 59.348 40.000 0.00 0.00 0.00 3.28
642 6111 6.322201 CCAGAGCTAACATAAACATCCCAAAT 59.678 38.462 0.00 0.00 0.00 2.32
644 6113 9.071276 CAGAGCTAACATAAACATCCCAAATAT 57.929 33.333 0.00 0.00 0.00 1.28
645 6114 9.646522 AGAGCTAACATAAACATCCCAAATATT 57.353 29.630 0.00 0.00 0.00 1.28
757 6335 3.197549 TGCTTTAATCAAATCCCAAGCCC 59.802 43.478 0.00 0.00 36.59 5.19
878 6538 1.410882 CTCCCTCGATTTCACTCTCCC 59.589 57.143 0.00 0.00 0.00 4.30
882 6542 3.024547 CCTCGATTTCACTCTCCCACTA 58.975 50.000 0.00 0.00 0.00 2.74
1057 6800 1.407989 GCATCCAGATAGCCATAGCCC 60.408 57.143 0.00 0.00 41.25 5.19
1102 6848 1.674221 GCACCACAGAGGACACATCTC 60.674 57.143 0.00 0.00 41.22 2.75
1124 6870 2.810274 CCCTGCATCCAAATGATACGAG 59.190 50.000 0.00 0.00 34.61 4.18
1127 6873 3.479489 TGCATCCAAATGATACGAGCAT 58.521 40.909 0.00 0.00 34.61 3.79
1182 6928 0.761802 CCTTCAGGGCAGGTCTATCC 59.238 60.000 0.00 0.00 0.00 2.59
1264 7010 1.449726 CTGCAGCAACAGAACCAGCA 61.450 55.000 0.00 0.00 40.25 4.41
1278 7024 1.073763 ACCAGCAATGTTGTCAGGCTA 59.926 47.619 0.00 0.00 36.73 3.93
1294 7040 0.830023 GCTAGATCTCCGAGGCCCTT 60.830 60.000 0.00 0.00 0.00 3.95
1301 7047 0.107214 CTCCGAGGCCCTTATTGCAA 60.107 55.000 0.00 0.00 0.00 4.08
1316 7062 2.634982 TGCAAAAATGGCGATCAGAC 57.365 45.000 0.00 0.00 0.00 3.51
1360 7109 3.766545 AGCTCCTCATTGCTTGGTTTAA 58.233 40.909 0.00 0.00 35.86 1.52
1363 7112 5.246883 AGCTCCTCATTGCTTGGTTTAAAAT 59.753 36.000 0.00 0.00 35.86 1.82
1410 7159 4.627035 TGCAACAGATTCGACAAGATACAG 59.373 41.667 0.00 0.00 0.00 2.74
1574 7323 7.453393 AGTGTTGATTCTTCTTTCCATAGTGA 58.547 34.615 0.00 0.00 0.00 3.41
1753 7502 2.769095 GGTAGCCCTGATTCTCTTCAGT 59.231 50.000 1.24 0.00 41.30 3.41
1767 7516 4.061596 CTCTTCAGTTCTCAAACCTGACC 58.938 47.826 0.00 0.00 35.92 4.02
1866 7615 4.183101 GCCTCAAGCATCTAGATATCAGC 58.817 47.826 4.54 4.77 42.97 4.26
1898 7647 1.555477 TATGGCCCTTTTCCGGACGT 61.555 55.000 1.83 0.00 0.00 4.34
1940 7689 5.221185 CCATTGTGGAGCTTGATTTATCAGG 60.221 44.000 0.00 0.00 40.96 3.86
1970 7719 1.212688 TGTGGGCATGATACCTTCCAG 59.787 52.381 0.00 0.00 0.00 3.86
1983 7732 6.443849 TGATACCTTCCAGTATGAAGAACCTT 59.556 38.462 2.48 0.00 43.60 3.50
2013 7762 8.807948 ATTTGGAGAGATTATTTTCTTTCGGA 57.192 30.769 0.00 0.00 29.75 4.55
2016 7765 8.807948 TGGAGAGATTATTTTCTTTCGGAAAT 57.192 30.769 3.24 0.00 42.63 2.17
2133 7882 1.474077 GGAAGCCTGCCAACTACAATG 59.526 52.381 0.00 0.00 0.00 2.82
2137 7886 2.041081 AGCCTGCCAACTACAATGGTAA 59.959 45.455 0.00 0.00 40.23 2.85
2145 7894 6.071616 TGCCAACTACAATGGTAAAATCCTTC 60.072 38.462 0.00 0.00 40.23 3.46
2190 7939 4.065088 TCAGTCATAACAAACTCACTGGC 58.935 43.478 0.00 0.00 33.50 4.85
2237 7986 2.357637 TCACAAAGCTAACAACACTGGC 59.642 45.455 0.00 0.00 0.00 4.85
2256 8006 1.413118 CCCTTGGCTCCAACAAACTT 58.587 50.000 0.00 0.00 0.00 2.66
2268 8018 3.324556 CCAACAAACTTGATGGGGTCATT 59.675 43.478 10.15 0.00 44.59 2.57
2269 8019 4.309099 CAACAAACTTGATGGGGTCATTG 58.691 43.478 0.00 0.00 36.54 2.82
2272 8022 5.579047 ACAAACTTGATGGGGTCATTGATA 58.421 37.500 0.00 0.00 36.54 2.15
2308 8058 7.047460 TCCCGTCTAGATATGTTAAAGGAAC 57.953 40.000 0.00 0.00 38.65 3.62
2313 8063 8.407064 CGTCTAGATATGTTAAAGGAACTGACT 58.593 37.037 0.00 0.00 40.86 3.41
2391 8141 7.152645 TCAGTCTAAGTTTTATTCAGCTTCGT 58.847 34.615 0.00 0.00 0.00 3.85
2401 8151 1.302033 CAGCTTCGTTCCTGCCAGT 60.302 57.895 0.00 0.00 0.00 4.00
2429 8179 1.757682 AAGTTTCCAACGTGGCTTCA 58.242 45.000 0.00 0.00 37.47 3.02
2446 8196 3.922240 GCTTCAATGGCAAACACATGTAG 59.078 43.478 0.00 0.00 0.00 2.74
2490 8240 5.357878 CACAAGCATTAATGACATGGTACCT 59.642 40.000 19.73 0.36 32.04 3.08
2522 8272 1.407258 GATCGCAGCTTCCTCAGTAGT 59.593 52.381 0.00 0.00 0.00 2.73
2650 8400 7.387265 TCAATACCTAAGCTTCCCATCAATA 57.613 36.000 0.00 0.00 0.00 1.90
2658 8408 8.552296 CCTAAGCTTCCCATCAATATAACCTAT 58.448 37.037 0.00 0.00 0.00 2.57
2680 8430 3.515502 TCTGGATCTCAGTCGGAACAATT 59.484 43.478 9.98 0.00 43.76 2.32
2726 8476 2.674380 AGCGCCAGGGCTTGAAAG 60.674 61.111 2.29 0.00 41.39 2.62
2732 8482 0.600057 CCAGGGCTTGAAAGACTTGC 59.400 55.000 2.56 0.00 39.63 4.01
2742 8492 6.709846 GGCTTGAAAGACTTGCTCTATATGAT 59.290 38.462 0.00 0.00 0.00 2.45
2872 8622 1.608055 TGACTCCAGCACAAACATGG 58.392 50.000 0.00 0.00 35.30 3.66
2878 8628 1.246649 CAGCACAAACATGGCAGGTA 58.753 50.000 4.75 0.00 0.00 3.08
2919 8669 3.006967 GCCTAAGAGACAACAACCTCTCA 59.993 47.826 0.00 0.00 38.70 3.27
2945 8695 2.751166 TTTCCTTCGCTTCTCCAGAG 57.249 50.000 0.00 0.00 0.00 3.35
2951 8702 4.874528 GCTTCTCCAGAGATGCCC 57.125 61.111 19.62 0.06 46.66 5.36
2953 8704 0.179051 GCTTCTCCAGAGATGCCCAG 60.179 60.000 19.62 6.61 46.66 4.45
2967 8718 1.556911 TGCCCAGGACTCATCTTTCTC 59.443 52.381 0.00 0.00 0.00 2.87
3021 8772 2.148446 CAGCATGGATTGGGGAGAAA 57.852 50.000 0.00 0.00 0.00 2.52
3024 8775 1.753073 GCATGGATTGGGGAGAAACTG 59.247 52.381 0.00 0.00 0.00 3.16
3064 8815 7.921214 TCTTACGACTGAGATCCAATATGTTTC 59.079 37.037 0.00 0.00 0.00 2.78
3092 8843 5.182001 GTCACATTCCAGTTGAGCTTACAAT 59.818 40.000 0.00 0.00 32.36 2.71
3102 8853 6.580041 CAGTTGAGCTTACAATGCTTGTTAAG 59.420 38.462 6.82 9.00 42.22 1.85
3172 8923 8.677148 ACCGAGATTTATGCTTAATTGTACAT 57.323 30.769 0.00 0.00 0.00 2.29
3180 8931 9.465985 TTTATGCTTAATTGTACATGCATGATG 57.534 29.630 32.75 9.18 40.65 3.07
3203 8954 6.215121 TGCAAACAAGATTCAACACTAATGG 58.785 36.000 0.00 0.00 0.00 3.16
3220 8971 4.627611 AATGGTCTTCAGAATGCATTCG 57.372 40.909 28.88 23.43 41.56 3.34
3226 8977 4.870426 GTCTTCAGAATGCATTCGGTTCTA 59.130 41.667 30.28 14.79 41.56 2.10
3366 9132 5.516044 TCCTGTAATAGTCTTACTGGAGCA 58.484 41.667 17.71 2.95 43.46 4.26
3393 9159 4.629200 CCTGCAGAAATCAGTACTCTTGTC 59.371 45.833 17.39 0.00 0.00 3.18
3456 9222 8.757307 AGGGAAATATACCTGAGAATATTGGA 57.243 34.615 0.00 0.00 35.30 3.53
3474 9240 4.380843 TGGAGCCTTAATTCAAGTGGAA 57.619 40.909 0.00 0.00 40.46 3.53
3499 9265 3.119291 CTCGACCTATCACACAATGAGC 58.881 50.000 0.00 0.00 41.91 4.26
3507 9273 1.672356 ACACAATGAGCTGTCCGGC 60.672 57.895 0.00 0.00 0.00 6.13
3657 13175 1.672356 CAACCCAAGTCTCTGCGGG 60.672 63.158 0.00 0.00 44.88 6.13
3684 13205 2.092158 TCTCTCTCGGAGATGTCCACAT 60.092 50.000 8.39 0.00 45.20 3.21
3709 13230 2.162408 GAGCCAATTCCAGGAGAAAACG 59.838 50.000 0.00 0.00 38.21 3.60
3954 13481 2.878406 CCATCACTGGTTCTCGTTTTGT 59.122 45.455 0.00 0.00 37.79 2.83
3955 13482 3.303990 CCATCACTGGTTCTCGTTTTGTG 60.304 47.826 0.00 0.00 37.79 3.33
3976 13503 9.926158 TTTGTGCTCATGTAATTCAATAAATGT 57.074 25.926 0.00 0.00 0.00 2.71
4171 19285 8.408043 TGGGGATTTATCATGAATGTATCAAC 57.592 34.615 0.00 0.00 42.54 3.18
4173 19287 7.093771 GGGGATTTATCATGAATGTATCAACCC 60.094 40.741 0.00 4.51 42.54 4.11
4180 19294 8.585471 ATCATGAATGTATCAACCCATATTCC 57.415 34.615 0.00 0.00 42.54 3.01
4181 19295 7.758609 TCATGAATGTATCAACCCATATTCCT 58.241 34.615 0.00 0.00 42.54 3.36
4182 19296 7.666804 TCATGAATGTATCAACCCATATTCCTG 59.333 37.037 0.00 0.00 42.54 3.86
4183 19297 6.910191 TGAATGTATCAACCCATATTCCTGT 58.090 36.000 0.00 0.00 34.30 4.00
4184 19298 8.040002 TGAATGTATCAACCCATATTCCTGTA 57.960 34.615 0.00 0.00 34.30 2.74
4185 19299 8.668653 TGAATGTATCAACCCATATTCCTGTAT 58.331 33.333 0.00 0.00 34.30 2.29
4186 19300 9.167311 GAATGTATCAACCCATATTCCTGTATC 57.833 37.037 0.00 0.00 0.00 2.24
4187 19301 7.625498 TGTATCAACCCATATTCCTGTATCA 57.375 36.000 0.00 0.00 0.00 2.15
4188 19302 8.040002 TGTATCAACCCATATTCCTGTATCAA 57.960 34.615 0.00 0.00 0.00 2.57
4189 19303 8.668653 TGTATCAACCCATATTCCTGTATCAAT 58.331 33.333 0.00 0.00 0.00 2.57
4190 19304 9.167311 GTATCAACCCATATTCCTGTATCAATC 57.833 37.037 0.00 0.00 0.00 2.67
4222 19336 6.402118 CCAATGTATTGTAGTGGAACAAGTCG 60.402 42.308 4.12 0.00 42.33 4.18
4224 19338 2.902705 TTGTAGTGGAACAAGTCGCT 57.097 45.000 0.00 0.00 44.16 4.93
4225 19339 2.902705 TGTAGTGGAACAAGTCGCTT 57.097 45.000 0.00 0.00 44.16 4.68
4230 19344 4.530710 AGTGGAACAAGTCGCTTACATA 57.469 40.909 0.00 0.00 44.16 2.29
4232 19346 4.021368 AGTGGAACAAGTCGCTTACATACT 60.021 41.667 0.00 0.00 44.16 2.12
4255 19404 6.258727 ACTTGCATGTATGAATTCTAGTTCCG 59.741 38.462 7.05 0.00 0.00 4.30
4257 19406 5.753438 TGCATGTATGAATTCTAGTTCCGTC 59.247 40.000 7.05 0.00 0.00 4.79
4259 19408 5.925506 TGTATGAATTCTAGTTCCGTCCA 57.074 39.130 7.05 0.00 0.00 4.02
4260 19409 6.479972 TGTATGAATTCTAGTTCCGTCCAT 57.520 37.500 7.05 0.00 0.00 3.41
4261 19410 6.513180 TGTATGAATTCTAGTTCCGTCCATC 58.487 40.000 7.05 0.00 0.00 3.51
4262 19411 4.041740 TGAATTCTAGTTCCGTCCATCG 57.958 45.455 7.05 0.00 39.52 3.84
4263 19412 3.697542 TGAATTCTAGTTCCGTCCATCGA 59.302 43.478 7.05 0.00 42.86 3.59
4264 19413 3.712091 ATTCTAGTTCCGTCCATCGAC 57.288 47.619 0.00 0.00 42.86 4.20
4265 19414 2.118313 TCTAGTTCCGTCCATCGACA 57.882 50.000 0.00 0.00 42.86 4.35
4266 19415 2.014857 TCTAGTTCCGTCCATCGACAG 58.985 52.381 0.00 0.00 42.86 3.51
4267 19416 2.014857 CTAGTTCCGTCCATCGACAGA 58.985 52.381 0.00 0.00 42.86 3.41
4268 19417 0.526662 AGTTCCGTCCATCGACAGAC 59.473 55.000 6.59 6.59 42.86 3.51
4269 19418 0.242825 GTTCCGTCCATCGACAGACA 59.757 55.000 14.92 0.00 42.86 3.41
4270 19419 0.963225 TTCCGTCCATCGACAGACAA 59.037 50.000 14.92 2.50 42.86 3.18
4349 19500 7.781324 ACAAAGGGTGATTTTATTGACTCAT 57.219 32.000 0.00 0.00 0.00 2.90
4353 19504 8.877864 AAGGGTGATTTTATTGACTCATAACA 57.122 30.769 0.00 0.00 0.00 2.41
4370 19521 8.216423 ACTCATAACAAAGCATCAAGGAGATAT 58.784 33.333 0.00 0.00 34.43 1.63
4383 19535 7.348080 TCAAGGAGATATAAACACGATGAGT 57.652 36.000 0.00 0.00 0.00 3.41
4386 19540 6.900189 AGGAGATATAAACACGATGAGTACG 58.100 40.000 0.00 0.00 0.00 3.67
4409 19563 3.069586 CACCCGACCTCTGCATAATTAGA 59.930 47.826 0.00 0.00 0.00 2.10
4412 19566 4.932200 CCCGACCTCTGCATAATTAGAATC 59.068 45.833 0.00 0.00 0.00 2.52
4433 19589 1.032014 ACACAGCCAACATCAACACC 58.968 50.000 0.00 0.00 0.00 4.16
4538 19701 8.190888 GATCAAAACAGTGATCGAGAAACTAT 57.809 34.615 0.00 0.00 43.27 2.12
4541 19704 8.304596 TCAAAACAGTGATCGAGAAACTATAGT 58.695 33.333 0.00 0.00 0.00 2.12
4543 19706 9.790389 AAAACAGTGATCGAGAAACTATAGTAG 57.210 33.333 5.65 0.00 0.00 2.57
4566 19729 3.740115 GACCATATCCGCACCAACTATT 58.260 45.455 0.00 0.00 0.00 1.73
4575 19739 3.120199 CCGCACCAACTATTTCTTGACAG 60.120 47.826 0.00 0.00 0.00 3.51
4589 19753 3.131577 TCTTGACAGTACAAGGACAACGT 59.868 43.478 0.00 0.00 44.84 3.99
4594 19758 3.869246 ACAGTACAAGGACAACGTGAAAG 59.131 43.478 0.00 0.00 32.54 2.62
4595 19759 4.116961 CAGTACAAGGACAACGTGAAAGA 58.883 43.478 0.00 0.00 32.54 2.52
4596 19760 4.569162 CAGTACAAGGACAACGTGAAAGAA 59.431 41.667 0.00 0.00 32.54 2.52
4599 19763 4.196193 ACAAGGACAACGTGAAAGAATCA 58.804 39.130 0.00 0.00 35.05 2.57
4615 19791 0.541863 ATCACGGTCATGAAGGGGAC 59.458 55.000 0.00 0.00 30.82 4.46
4638 19814 3.804325 CGATGCTAAAGAATCACCGTCAT 59.196 43.478 0.00 0.00 30.22 3.06
4674 19852 9.627123 CCACCAAAGGTCATATTCTAGATTTTA 57.373 33.333 0.00 0.00 31.02 1.52
4696 19875 3.442076 ACCCTGAAGAATAAGTCCGAGT 58.558 45.455 0.00 0.00 0.00 4.18
4707 19888 2.863132 AGTCCGAGTATATCCGAGCT 57.137 50.000 0.00 0.00 0.00 4.09
4717 19898 6.537453 AGTATATCCGAGCTATGCTTTCAT 57.463 37.500 0.00 0.00 39.88 2.57
4721 19902 3.872696 TCCGAGCTATGCTTTCATCAAA 58.127 40.909 0.00 0.00 39.88 2.69
4738 19920 7.906611 TCATCAAAGTAATGACACAAAAACG 57.093 32.000 0.00 0.00 30.82 3.60
4751 19933 3.801050 CACAAAAACGTCATCATTGCCAA 59.199 39.130 0.00 0.00 0.00 4.52
4752 19934 4.448395 CACAAAAACGTCATCATTGCCAAT 59.552 37.500 0.00 0.00 0.00 3.16
4763 19945 7.264221 GTCATCATTGCCAATTATAACCAACA 58.736 34.615 0.00 0.00 0.00 3.33
4784 19969 4.079558 ACATGGGCAGACCTAGATTTTCAT 60.080 41.667 0.00 0.00 41.11 2.57
4787 19972 3.137360 GGGCAGACCTAGATTTTCATCCT 59.863 47.826 0.00 0.00 35.85 3.24
4791 19976 5.630069 GCAGACCTAGATTTTCATCCTGGAA 60.630 44.000 0.00 0.00 0.00 3.53
4842 20027 4.100529 CCAAATCGAAGTCAATCATGTGC 58.899 43.478 0.00 0.00 0.00 4.57
4843 20028 4.100529 CAAATCGAAGTCAATCATGTGCC 58.899 43.478 0.00 0.00 0.00 5.01
4845 20030 0.247814 CGAAGTCAATCATGTGCCGC 60.248 55.000 0.00 0.00 0.00 6.53
4860 20047 2.113139 CGCCACCACCACTTTCCT 59.887 61.111 0.00 0.00 0.00 3.36
4878 20065 1.065199 CCTCAATCCCAGCAGCTACAA 60.065 52.381 0.00 0.00 0.00 2.41
4896 20085 4.142780 GCACCGGGCTAGAAATCC 57.857 61.111 6.32 0.00 40.25 3.01
4900 20089 0.620700 ACCGGGCTAGAAATCCCACT 60.621 55.000 6.32 0.00 42.75 4.00
4906 20095 3.555168 GGGCTAGAAATCCCACTATCGTG 60.555 52.174 0.00 0.00 42.18 4.35
4910 20099 5.241064 GCTAGAAATCCCACTATCGTGACTA 59.759 44.000 0.00 0.00 43.97 2.59
4913 20102 4.920640 AATCCCACTATCGTGACTACAG 57.079 45.455 0.00 0.00 43.97 2.74
4966 20160 7.450903 TCATAGATTGCATCTCATCACTGAAT 58.549 34.615 2.47 0.00 40.76 2.57
4968 20162 5.437946 AGATTGCATCTCATCACTGAATGT 58.562 37.500 0.00 0.00 33.42 2.71
4976 20170 7.148356 GCATCTCATCACTGAATGTAAACTGAA 60.148 37.037 0.00 0.00 0.00 3.02
4977 20171 7.895975 TCTCATCACTGAATGTAAACTGAAG 57.104 36.000 0.00 0.00 0.00 3.02
4998 20192 1.689273 AGAGTGAGAGCCGTCAAAACT 59.311 47.619 0.00 0.00 0.00 2.66
5006 20200 3.442273 AGAGCCGTCAAAACTCACAAAAA 59.558 39.130 0.00 0.00 32.71 1.94
5033 20227 1.442148 GGCTACGTCCCACATCCTC 59.558 63.158 0.00 0.00 0.00 3.71
5034 20228 1.065928 GCTACGTCCCACATCCTCG 59.934 63.158 0.00 0.00 0.00 4.63
5035 20229 1.065928 CTACGTCCCACATCCTCGC 59.934 63.158 0.00 0.00 0.00 5.03
5036 20230 1.379443 TACGTCCCACATCCTCGCT 60.379 57.895 0.00 0.00 0.00 4.93
5037 20231 0.107066 TACGTCCCACATCCTCGCTA 60.107 55.000 0.00 0.00 0.00 4.26
5038 20232 1.360551 CGTCCCACATCCTCGCTAG 59.639 63.158 0.00 0.00 0.00 3.42
5040 20234 1.688772 GTCCCACATCCTCGCTAGTA 58.311 55.000 0.00 0.00 0.00 1.82
5041 20235 1.337387 GTCCCACATCCTCGCTAGTAC 59.663 57.143 0.00 0.00 0.00 2.73
5042 20236 0.311165 CCCACATCCTCGCTAGTACG 59.689 60.000 0.00 0.00 0.00 3.67
5043 20237 1.306148 CCACATCCTCGCTAGTACGA 58.694 55.000 0.00 0.00 40.36 3.43
5046 20249 1.674962 ACATCCTCGCTAGTACGAACC 59.325 52.381 0.00 0.00 42.39 3.62
5049 20252 0.100146 CCTCGCTAGTACGAACCACC 59.900 60.000 0.00 0.00 42.39 4.61
5051 20254 1.226491 CGCTAGTACGAACCACCGG 60.226 63.158 0.00 0.00 34.06 5.28
5056 20259 4.360964 TACGAACCACCGGCACCG 62.361 66.667 0.00 1.02 39.44 4.94
5068 20271 2.743636 CGGCACCGGATCTACATAAT 57.256 50.000 9.46 0.00 35.56 1.28
5072 20275 4.579869 GGCACCGGATCTACATAATGAAT 58.420 43.478 9.46 0.00 0.00 2.57
5074 20277 5.473504 GGCACCGGATCTACATAATGAATTT 59.526 40.000 9.46 0.00 0.00 1.82
5075 20278 6.348540 GGCACCGGATCTACATAATGAATTTC 60.349 42.308 9.46 0.00 0.00 2.17
5076 20279 6.204688 GCACCGGATCTACATAATGAATTTCA 59.795 38.462 9.46 0.75 0.00 2.69
5087 20291 8.421249 ACATAATGAATTTCAAAGACCCTTCA 57.579 30.769 2.68 0.00 0.00 3.02
5089 20293 9.880157 CATAATGAATTTCAAAGACCCTTCAAT 57.120 29.630 2.68 0.00 0.00 2.57
5094 20298 2.778299 TCAAAGACCCTTCAATGACCG 58.222 47.619 0.00 0.00 0.00 4.79
5096 20300 0.693049 AAGACCCTTCAATGACCGCT 59.307 50.000 0.00 0.00 0.00 5.52
5116 20320 0.458025 GCAATCTGCAGCTTGAAGGC 60.458 55.000 29.43 13.38 44.26 4.35
5157 20361 1.247567 CCAACAATGGTGTGTCTCCC 58.752 55.000 0.00 0.00 42.18 4.30
5158 20362 0.874390 CAACAATGGTGTGTCTCCCG 59.126 55.000 0.00 0.00 38.27 5.14
5159 20363 0.762418 AACAATGGTGTGTCTCCCGA 59.238 50.000 0.00 0.00 38.27 5.14
5160 20364 0.762418 ACAATGGTGTGTCTCCCGAA 59.238 50.000 0.00 0.00 36.31 4.30
5161 20365 1.142060 ACAATGGTGTGTCTCCCGAAA 59.858 47.619 0.00 0.00 36.31 3.46
5162 20366 1.806542 CAATGGTGTGTCTCCCGAAAG 59.193 52.381 0.00 0.00 0.00 2.62
5163 20367 0.321653 ATGGTGTGTCTCCCGAAAGC 60.322 55.000 0.00 0.00 0.00 3.51
5164 20368 1.671379 GGTGTGTCTCCCGAAAGCC 60.671 63.158 0.00 0.00 0.00 4.35
5165 20369 1.070786 GTGTGTCTCCCGAAAGCCA 59.929 57.895 0.00 0.00 0.00 4.75
5166 20370 1.070786 TGTGTCTCCCGAAAGCCAC 59.929 57.895 0.00 0.00 0.00 5.01
5167 20371 1.671379 GTGTCTCCCGAAAGCCACC 60.671 63.158 0.00 0.00 0.00 4.61
5168 20372 2.434359 GTCTCCCGAAAGCCACCG 60.434 66.667 0.00 0.00 0.00 4.94
5169 20373 2.602267 TCTCCCGAAAGCCACCGA 60.602 61.111 0.00 0.00 0.00 4.69
5170 20374 2.211410 TCTCCCGAAAGCCACCGAA 61.211 57.895 0.00 0.00 0.00 4.30
5171 20375 2.031465 TCCCGAAAGCCACCGAAC 59.969 61.111 0.00 0.00 0.00 3.95
5172 20376 3.419759 CCCGAAAGCCACCGAACG 61.420 66.667 0.00 0.00 0.00 3.95
5173 20377 4.084888 CCGAAAGCCACCGAACGC 62.085 66.667 0.00 0.00 0.00 4.84
5174 20378 3.342627 CGAAAGCCACCGAACGCA 61.343 61.111 0.00 0.00 0.00 5.24
5175 20379 2.677003 CGAAAGCCACCGAACGCAT 61.677 57.895 0.00 0.00 0.00 4.73
5176 20380 1.134694 GAAAGCCACCGAACGCATC 59.865 57.895 0.00 0.00 0.00 3.91
5177 20381 1.573829 GAAAGCCACCGAACGCATCA 61.574 55.000 0.00 0.00 0.00 3.07
5178 20382 1.577328 AAAGCCACCGAACGCATCAG 61.577 55.000 0.00 0.00 0.00 2.90
5179 20383 2.434185 GCCACCGAACGCATCAGA 60.434 61.111 0.00 0.00 0.00 3.27
5180 20384 2.456119 GCCACCGAACGCATCAGAG 61.456 63.158 0.00 0.00 0.00 3.35
5181 20385 1.811266 CCACCGAACGCATCAGAGG 60.811 63.158 0.00 0.00 0.00 3.69
5182 20386 1.079819 CACCGAACGCATCAGAGGT 60.080 57.895 0.00 0.00 0.00 3.85
5183 20387 1.079819 ACCGAACGCATCAGAGGTG 60.080 57.895 0.00 0.00 0.00 4.00
5184 20388 1.079819 CCGAACGCATCAGAGGTGT 60.080 57.895 0.00 0.00 0.00 4.16
5185 20389 0.172578 CCGAACGCATCAGAGGTGTA 59.827 55.000 0.86 0.00 0.00 2.90
5186 20390 1.550065 CGAACGCATCAGAGGTGTAG 58.450 55.000 0.86 0.00 0.00 2.74
5187 20391 1.281899 GAACGCATCAGAGGTGTAGC 58.718 55.000 0.86 0.00 0.00 3.58
5188 20392 0.608130 AACGCATCAGAGGTGTAGCA 59.392 50.000 0.86 0.00 0.00 3.49
5189 20393 0.174389 ACGCATCAGAGGTGTAGCAG 59.826 55.000 0.00 0.00 0.00 4.24
5190 20394 1.150567 CGCATCAGAGGTGTAGCAGC 61.151 60.000 0.00 0.00 0.00 5.25
5191 20395 0.107993 GCATCAGAGGTGTAGCAGCA 60.108 55.000 0.00 0.00 33.95 4.41
5192 20396 1.474677 GCATCAGAGGTGTAGCAGCAT 60.475 52.381 0.00 0.00 33.95 3.79
5193 20397 2.481854 CATCAGAGGTGTAGCAGCATC 58.518 52.381 0.00 0.00 33.95 3.91
5194 20398 0.457443 TCAGAGGTGTAGCAGCATCG 59.543 55.000 0.00 0.00 33.95 3.84
5195 20399 0.457443 CAGAGGTGTAGCAGCATCGA 59.543 55.000 0.00 0.00 33.95 3.59
5196 20400 0.457851 AGAGGTGTAGCAGCATCGAC 59.542 55.000 0.00 0.00 33.95 4.20
5197 20401 0.528684 GAGGTGTAGCAGCATCGACC 60.529 60.000 0.00 0.00 33.95 4.79
5198 20402 0.972983 AGGTGTAGCAGCATCGACCT 60.973 55.000 0.00 0.00 33.95 3.85
5199 20403 0.528684 GGTGTAGCAGCATCGACCTC 60.529 60.000 0.00 0.00 0.00 3.85
5200 20404 0.528684 GTGTAGCAGCATCGACCTCC 60.529 60.000 0.00 0.00 0.00 4.30
5201 20405 0.970427 TGTAGCAGCATCGACCTCCA 60.970 55.000 0.00 0.00 0.00 3.86
5202 20406 0.528684 GTAGCAGCATCGACCTCCAC 60.529 60.000 0.00 0.00 0.00 4.02
5203 20407 0.970427 TAGCAGCATCGACCTCCACA 60.970 55.000 0.00 0.00 0.00 4.17
5204 20408 1.153289 GCAGCATCGACCTCCACAT 60.153 57.895 0.00 0.00 0.00 3.21
5205 20409 1.156645 GCAGCATCGACCTCCACATC 61.157 60.000 0.00 0.00 0.00 3.06
5206 20410 0.176449 CAGCATCGACCTCCACATCA 59.824 55.000 0.00 0.00 0.00 3.07
5207 20411 0.176680 AGCATCGACCTCCACATCAC 59.823 55.000 0.00 0.00 0.00 3.06
5208 20412 1.148157 GCATCGACCTCCACATCACG 61.148 60.000 0.00 0.00 0.00 4.35
5209 20413 0.173481 CATCGACCTCCACATCACGT 59.827 55.000 0.00 0.00 0.00 4.49
5210 20414 0.173481 ATCGACCTCCACATCACGTG 59.827 55.000 9.94 9.94 45.92 4.49
5211 20415 1.176619 TCGACCTCCACATCACGTGT 61.177 55.000 16.51 0.00 44.78 4.49
5212 20416 0.732880 CGACCTCCACATCACGTGTC 60.733 60.000 16.51 1.01 44.78 3.67
5213 20417 0.603569 GACCTCCACATCACGTGTCT 59.396 55.000 16.51 1.11 44.78 3.41
5214 20418 0.603569 ACCTCCACATCACGTGTCTC 59.396 55.000 16.51 0.00 44.78 3.36
5215 20419 0.891373 CCTCCACATCACGTGTCTCT 59.109 55.000 16.51 0.00 44.78 3.10
5222 20426 1.468914 CATCACGTGTCTCTCGAAGGA 59.531 52.381 16.51 0.00 0.00 3.36
5223 20427 1.822506 TCACGTGTCTCTCGAAGGAT 58.177 50.000 16.51 0.00 0.00 3.24
5230 20434 0.456221 TCTCTCGAAGGATGCCGAAC 59.544 55.000 0.00 0.00 34.17 3.95
5231 20435 0.173481 CTCTCGAAGGATGCCGAACA 59.827 55.000 0.00 0.00 34.17 3.18
5234 20438 0.606096 TCGAAGGATGCCGAACAGAA 59.394 50.000 0.00 0.00 0.00 3.02
5239 20443 1.347707 AGGATGCCGAACAGAACAGAA 59.652 47.619 0.00 0.00 0.00 3.02
5240 20444 1.734465 GGATGCCGAACAGAACAGAAG 59.266 52.381 0.00 0.00 0.00 2.85
5243 20447 0.235926 GCCGAACAGAACAGAAGTGC 59.764 55.000 0.00 0.00 0.00 4.40
5254 20458 0.656259 CAGAAGTGCATCAGCCATCG 59.344 55.000 0.00 0.00 41.13 3.84
5255 20459 0.538584 AGAAGTGCATCAGCCATCGA 59.461 50.000 0.00 0.00 41.13 3.59
5256 20460 0.935898 GAAGTGCATCAGCCATCGAG 59.064 55.000 0.00 0.00 41.13 4.04
5257 20461 0.251354 AAGTGCATCAGCCATCGAGT 59.749 50.000 0.00 0.00 41.13 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 5473 2.760385 GGTGGAGGACGGAGAGGG 60.760 72.222 0.00 0.00 0.00 4.30
170 5495 1.538849 CCTGCTTGCCAACAAAGGAAC 60.539 52.381 0.00 0.00 36.32 3.62
264 5593 2.158696 ACTGCTCTGCTCCTCTGTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
305 5637 0.324275 AAACTGTGGGTGTTGGCTGT 60.324 50.000 0.00 0.00 0.00 4.40
330 5662 1.872952 TGCATCCGTTGTGAACTGAAG 59.127 47.619 0.00 0.00 0.00 3.02
331 5663 1.872952 CTGCATCCGTTGTGAACTGAA 59.127 47.619 0.00 0.00 0.00 3.02
410 5743 5.884232 CCAATCCCATCCATATATGTGAGTG 59.116 44.000 11.73 8.70 31.77 3.51
418 5751 4.220693 CGAAGCCAATCCCATCCATATA 57.779 45.455 0.00 0.00 0.00 0.86
512 5875 6.942532 TGACTTCTGTAATATTTGGGATGC 57.057 37.500 0.00 0.00 0.00 3.91
527 5890 1.989165 GCTACGAGTGCTTGACTTCTG 59.011 52.381 0.00 0.00 33.83 3.02
637 6106 8.918202 TGGTTACTAGCAATCCTAATATTTGG 57.082 34.615 9.42 9.42 0.00 3.28
642 6111 9.969001 AAGTTTTGGTTACTAGCAATCCTAATA 57.031 29.630 0.00 0.00 41.06 0.98
644 6113 8.573035 CAAAGTTTTGGTTACTAGCAATCCTAA 58.427 33.333 0.00 0.00 41.06 2.69
645 6114 7.722285 ACAAAGTTTTGGTTACTAGCAATCCTA 59.278 33.333 9.22 0.00 41.06 2.94
689 6264 2.977405 AATCAGAGCAGTTTGTTCGC 57.023 45.000 0.00 0.00 32.57 4.70
757 6335 1.973281 ACACCAATCAGGGCTTGCG 60.973 57.895 0.00 0.00 43.89 4.85
878 6538 7.326063 GCTGGTTGCTGTTTAATTAAAGTAGTG 59.674 37.037 10.92 2.09 38.95 2.74
882 6542 5.009210 TCGCTGGTTGCTGTTTAATTAAAGT 59.991 36.000 10.92 0.00 40.11 2.66
1102 6848 1.881973 CGTATCATTTGGATGCAGGGG 59.118 52.381 0.00 0.00 38.40 4.79
1182 6928 0.537371 AAAGGAGGTTTGCAGGGTCG 60.537 55.000 0.00 0.00 0.00 4.79
1191 6937 4.347607 CCTTCCATGATGAAAGGAGGTTT 58.652 43.478 4.18 0.00 32.11 3.27
1264 7010 3.181471 CGGAGATCTAGCCTGACAACATT 60.181 47.826 0.00 0.00 0.00 2.71
1278 7024 1.974236 CAATAAGGGCCTCGGAGATCT 59.026 52.381 6.46 0.00 33.89 2.75
1294 7040 4.671377 GTCTGATCGCCATTTTTGCAATA 58.329 39.130 0.00 0.00 0.00 1.90
1360 7109 4.957296 AGGTCGAGATGCCGTAAATATTT 58.043 39.130 5.89 5.89 0.00 1.40
1363 7112 2.953648 TGAGGTCGAGATGCCGTAAATA 59.046 45.455 0.00 0.00 0.00 1.40
1548 7297 7.939039 TCACTATGGAAAGAAGAATCAACACTT 59.061 33.333 0.00 0.00 0.00 3.16
1574 7323 5.069648 CAGGTGATATCAGTGGAGTATGTGT 59.930 44.000 5.42 0.00 0.00 3.72
1753 7502 3.967326 TCAAGAGAGGTCAGGTTTGAGAA 59.033 43.478 0.00 0.00 32.98 2.87
1767 7516 6.132056 CGAAATGTCAAGTGTTTCAAGAGAG 58.868 40.000 0.00 0.00 32.75 3.20
1865 7614 2.418609 GGGCCATAGAAACCATTGTTGC 60.419 50.000 4.39 0.00 34.13 4.17
1866 7615 3.099141 AGGGCCATAGAAACCATTGTTG 58.901 45.455 6.18 0.00 34.13 3.33
1940 7689 5.221244 GGTATCATGCCCACAAGGTTATTTC 60.221 44.000 0.00 0.00 38.26 2.17
1970 7719 9.010029 TCTCCAAATTACAAAGGTTCTTCATAC 57.990 33.333 0.00 0.00 0.00 2.39
2133 7882 4.079253 TCAGGTTGCTGAAGGATTTTACC 58.921 43.478 0.00 0.00 0.00 2.85
2137 7886 2.165998 GCTCAGGTTGCTGAAGGATTT 58.834 47.619 0.00 0.00 32.43 2.17
2145 7894 4.711949 AGCCGGCTCAGGTTGCTG 62.712 66.667 27.08 0.00 36.63 4.41
2190 7939 1.671979 CTATCCACTGTGGCACATGG 58.328 55.000 28.41 28.41 44.52 3.66
2201 7950 2.836636 TGTGAGCTCTCCTATCCACT 57.163 50.000 16.19 0.00 0.00 4.00
2237 7986 1.069049 CAAGTTTGTTGGAGCCAAGGG 59.931 52.381 1.41 0.00 36.52 3.95
2256 8006 3.565307 GCCTTTATCAATGACCCCATCA 58.435 45.455 0.00 0.00 43.13 3.07
2272 8022 3.714798 TCTAGACGGGATAAATGGCCTTT 59.285 43.478 3.32 0.00 0.00 3.11
2286 8036 7.648510 GTCAGTTCCTTTAACATATCTAGACGG 59.351 40.741 0.00 0.00 40.83 4.79
2313 8063 3.072330 TGGCTATGGAGTTGTCTGACAAA 59.928 43.478 23.55 9.72 40.15 2.83
2401 8151 2.372837 ACGTTGGAAACTTAGGCCCTAA 59.627 45.455 2.61 2.61 46.99 2.69
2429 8179 4.144297 ACTCACTACATGTGTTTGCCATT 58.856 39.130 9.11 0.00 46.27 3.16
2446 8196 6.785488 TGTGTTTGATACATCAAGACTCAC 57.215 37.500 4.91 11.94 46.34 3.51
2458 8208 8.800972 CATGTCATTAATGCTTGTGTTTGATAC 58.199 33.333 10.76 0.00 0.00 2.24
2490 8240 1.202114 GCTGCGATCCAAAACCAATCA 59.798 47.619 0.00 0.00 0.00 2.57
2580 8330 0.738975 CCATTGCCACTGCTCTCATG 59.261 55.000 0.00 0.00 38.71 3.07
2626 8376 5.708736 TTGATGGGAAGCTTAGGTATTGA 57.291 39.130 0.00 0.00 0.00 2.57
2650 8400 5.013547 CCGACTGAGATCCAGATAGGTTAT 58.986 45.833 15.51 0.00 45.78 1.89
2658 8408 2.215942 TGTTCCGACTGAGATCCAGA 57.784 50.000 15.51 0.00 45.78 3.86
2680 8430 4.080751 GTCTAATGGTAGTGGCCCAACTAA 60.081 45.833 0.00 0.00 34.50 2.24
2742 8492 5.104151 TGGAATGGCACCAGAGATAATGTTA 60.104 40.000 0.00 0.00 33.22 2.41
2748 8498 3.321039 AGATGGAATGGCACCAGAGATA 58.679 45.455 3.08 0.00 40.89 1.98
2839 8589 4.884164 GCTGGAGTCATTTACTAGGCAATT 59.116 41.667 0.00 0.00 39.07 2.32
2872 8622 7.757624 GCTTAGACTAATGATACTCATACCTGC 59.242 40.741 0.00 0.00 35.76 4.85
2878 8628 9.815306 TCTTAGGCTTAGACTAATGATACTCAT 57.185 33.333 8.12 0.00 39.09 2.90
2891 8641 4.930405 GGTTGTTGTCTCTTAGGCTTAGAC 59.070 45.833 14.12 14.12 40.05 2.59
2919 8669 3.339141 GAGAAGCGAAGGAAAATCACCT 58.661 45.455 0.00 0.00 39.69 4.00
2945 8695 2.172293 AGAAAGATGAGTCCTGGGCATC 59.828 50.000 0.00 8.79 38.89 3.91
2951 8702 4.554526 CGAGATCGAGAAAGATGAGTCCTG 60.555 50.000 0.00 0.00 43.02 3.86
2953 8704 3.304391 CCGAGATCGAGAAAGATGAGTCC 60.304 52.174 3.31 0.00 43.02 3.85
2967 8718 5.049060 AGAGAACTGATTATGTCCGAGATCG 60.049 44.000 0.00 0.00 39.44 3.69
3021 8772 4.680110 CGTAAGAATGACAAAGACGACAGT 59.320 41.667 0.00 0.00 43.02 3.55
3064 8815 2.163010 GCTCAACTGGAATGTGACCATG 59.837 50.000 0.00 0.00 36.79 3.66
3102 8853 3.448660 AGGCAAGGTCCAAATATTGAAGC 59.551 43.478 0.00 0.00 0.00 3.86
3155 8906 7.595875 GCATCATGCATGTACAATTAAGCATAA 59.404 33.333 25.43 1.32 44.26 1.90
3159 8910 5.817616 GCATCATGCATGTACAATTAAGC 57.182 39.130 25.43 9.83 44.26 3.09
3180 8931 6.215845 ACCATTAGTGTTGAATCTTGTTTGC 58.784 36.000 0.00 0.00 0.00 3.68
3190 8941 6.072508 GCATTCTGAAGACCATTAGTGTTGAA 60.073 38.462 0.00 0.00 30.75 2.69
3191 8942 5.412594 GCATTCTGAAGACCATTAGTGTTGA 59.587 40.000 0.00 0.00 30.75 3.18
3203 8954 3.686726 AGAACCGAATGCATTCTGAAGAC 59.313 43.478 30.26 18.63 34.69 3.01
3220 8971 5.537300 TCATCAGCCAATACTCTAGAACC 57.463 43.478 0.00 0.00 0.00 3.62
3226 8977 6.888632 AGTTCATTTTCATCAGCCAATACTCT 59.111 34.615 0.00 0.00 0.00 3.24
3365 9131 6.344500 AGAGTACTGATTTCTGCAGGTATTG 58.656 40.000 15.13 7.43 37.69 1.90
3366 9132 6.552445 AGAGTACTGATTTCTGCAGGTATT 57.448 37.500 15.13 3.61 37.69 1.89
3384 9150 3.254060 GCTCTTCAATGCGACAAGAGTA 58.746 45.455 9.99 0.00 43.48 2.59
3393 9159 1.446907 AGTTCAGGCTCTTCAATGCG 58.553 50.000 0.00 0.00 0.00 4.73
3432 9198 7.554476 GCTCCAATATTCTCAGGTATATTTCCC 59.446 40.741 0.00 0.00 0.00 3.97
3441 9207 5.975988 TTAAGGCTCCAATATTCTCAGGT 57.024 39.130 0.00 0.00 0.00 4.00
3456 9222 5.904362 GTGATTCCACTTGAATTAAGGCT 57.096 39.130 0.00 0.00 43.81 4.58
3474 9240 4.402474 TCATTGTGTGATAGGTCGAGTGAT 59.598 41.667 0.00 0.00 0.00 3.06
3499 9265 1.078426 AAGGGATTTCGCCGGACAG 60.078 57.895 5.05 0.00 0.00 3.51
3507 9273 2.159653 CGACAAGCTTGAAGGGATTTCG 60.160 50.000 32.50 22.45 38.71 3.46
3646 13164 4.390556 AGGAGGCCCGCAGAGACT 62.391 66.667 0.00 0.00 37.58 3.24
3684 13205 1.615124 TCCTGGAATTGGCTCGGGA 60.615 57.895 0.00 0.00 0.00 5.14
3709 13230 0.528466 TCATCGCTTGCATCTCCGTC 60.528 55.000 0.00 0.00 0.00 4.79
3947 13474 6.932901 ATTGAATTACATGAGCACAAAACG 57.067 33.333 0.00 0.00 0.00 3.60
4028 13564 6.191657 TGCACCTTGAATACATATCCTGAT 57.808 37.500 0.00 0.00 0.00 2.90
4149 19263 8.408043 TGGGTTGATACATTCATGATAAATCC 57.592 34.615 0.00 0.00 33.34 3.01
4171 19285 9.265901 GAATATCGATTGATACAGGAATATGGG 57.734 37.037 1.71 0.00 39.81 4.00
4173 19287 9.822185 TGGAATATCGATTGATACAGGAATATG 57.178 33.333 1.71 0.00 39.81 1.78
4176 19290 9.170734 CATTGGAATATCGATTGATACAGGAAT 57.829 33.333 1.71 0.38 39.81 3.01
4185 19299 9.996554 ACTACAATACATTGGAATATCGATTGA 57.003 29.630 1.71 0.00 41.96 2.57
4187 19301 9.219603 CCACTACAATACATTGGAATATCGATT 57.780 33.333 1.71 0.00 41.96 3.34
4188 19302 8.593679 TCCACTACAATACATTGGAATATCGAT 58.406 33.333 2.16 2.16 41.96 3.59
4189 19303 7.958088 TCCACTACAATACATTGGAATATCGA 58.042 34.615 6.87 0.00 41.96 3.59
4190 19304 8.495949 GTTCCACTACAATACATTGGAATATCG 58.504 37.037 4.75 0.00 45.67 2.92
4200 19314 4.630069 GCGACTTGTTCCACTACAATACAT 59.370 41.667 0.00 0.00 37.39 2.29
4206 19320 2.902705 AAGCGACTTGTTCCACTACA 57.097 45.000 0.00 0.00 0.00 2.74
4210 19324 4.243270 AGTATGTAAGCGACTTGTTCCAC 58.757 43.478 2.86 0.00 0.00 4.02
4230 19344 6.258727 CGGAACTAGAATTCATACATGCAAGT 59.741 38.462 8.44 0.00 0.00 3.16
4232 19346 6.112734 ACGGAACTAGAATTCATACATGCAA 58.887 36.000 8.44 0.00 0.00 4.08
4255 19404 8.812147 TTATATACAATTGTCTGTCGATGGAC 57.188 34.615 15.85 11.97 43.71 4.02
4323 19473 8.017418 TGAGTCAATAAAATCACCCTTTGTTT 57.983 30.769 0.00 0.00 0.00 2.83
4324 19474 7.595819 TGAGTCAATAAAATCACCCTTTGTT 57.404 32.000 0.00 0.00 0.00 2.83
4349 19500 9.679661 TGTTTATATCTCCTTGATGCTTTGTTA 57.320 29.630 0.00 0.00 36.65 2.41
4353 19504 7.047891 TCGTGTTTATATCTCCTTGATGCTTT 58.952 34.615 0.00 0.00 36.65 3.51
4370 19521 2.598589 GGTGCGTACTCATCGTGTTTA 58.401 47.619 3.01 0.00 0.00 2.01
4383 19535 3.755628 GCAGAGGTCGGGTGCGTA 61.756 66.667 0.00 0.00 0.00 4.42
4386 19540 0.179045 ATTATGCAGAGGTCGGGTGC 60.179 55.000 0.00 0.00 37.73 5.01
4409 19563 2.291209 TGATGTTGGCTGTGTGGATT 57.709 45.000 0.00 0.00 0.00 3.01
4412 19566 1.031235 TGTTGATGTTGGCTGTGTGG 58.969 50.000 0.00 0.00 0.00 4.17
4450 19608 5.627499 TTTGTATGATTTTGCTCTTCGCT 57.373 34.783 0.00 0.00 40.11 4.93
4453 19612 9.853921 CTTTGTTTTTGTATGATTTTGCTCTTC 57.146 29.630 0.00 0.00 0.00 2.87
4463 19622 7.174107 AGGCATAGCTTTGTTTTTGTATGAT 57.826 32.000 6.03 0.00 0.00 2.45
4472 19631 3.278574 TCGCATAGGCATAGCTTTGTTT 58.721 40.909 6.03 0.00 41.24 2.83
4474 19633 2.487934 CTCGCATAGGCATAGCTTTGT 58.512 47.619 6.03 0.00 41.24 2.83
4524 19687 5.178996 GGTCGCTACTATAGTTTCTCGATCA 59.821 44.000 11.40 0.00 0.00 2.92
4531 19694 6.256686 CGGATATGGTCGCTACTATAGTTTC 58.743 44.000 11.40 2.52 33.16 2.78
4566 19729 4.116961 CGTTGTCCTTGTACTGTCAAGAA 58.883 43.478 16.40 0.06 45.11 2.52
4575 19739 5.235616 TGATTCTTTCACGTTGTCCTTGTAC 59.764 40.000 0.00 0.00 0.00 2.90
4589 19753 4.002982 CCTTCATGACCGTGATTCTTTCA 58.997 43.478 0.00 0.00 0.00 2.69
4594 19758 1.209504 TCCCCTTCATGACCGTGATTC 59.790 52.381 0.00 0.00 0.00 2.52
4595 19759 1.065418 GTCCCCTTCATGACCGTGATT 60.065 52.381 0.00 0.00 0.00 2.57
4596 19760 0.541863 GTCCCCTTCATGACCGTGAT 59.458 55.000 0.00 0.00 0.00 3.06
4599 19763 3.400188 GGTCCCCTTCATGACCGT 58.600 61.111 0.00 0.00 41.48 4.83
4601 19765 0.179045 CATCGGTCCCCTTCATGACC 60.179 60.000 0.00 0.00 46.15 4.02
4602 19766 0.815615 GCATCGGTCCCCTTCATGAC 60.816 60.000 0.00 0.00 0.00 3.06
4615 19791 2.540101 GACGGTGATTCTTTAGCATCGG 59.460 50.000 0.00 0.00 40.22 4.18
4638 19814 2.235402 GACCTTTGGTGGTTAGATCCGA 59.765 50.000 0.00 0.00 41.00 4.55
4645 19821 7.743116 TCTAGAATATGACCTTTGGTGGTTA 57.257 36.000 0.00 0.00 41.00 2.85
4674 19852 3.838903 ACTCGGACTTATTCTTCAGGGTT 59.161 43.478 0.00 0.00 0.00 4.11
4686 19865 4.283363 AGCTCGGATATACTCGGACTTA 57.717 45.455 0.00 0.00 0.00 2.24
4696 19875 6.530019 TGATGAAAGCATAGCTCGGATATA 57.470 37.500 0.00 0.00 38.25 0.86
4707 19888 8.334263 TGTGTCATTACTTTGATGAAAGCATA 57.666 30.769 4.41 0.00 42.19 3.14
4717 19898 6.843208 TGACGTTTTTGTGTCATTACTTTGA 58.157 32.000 0.00 0.00 40.02 2.69
4738 19920 7.264221 TGTTGGTTATAATTGGCAATGATGAC 58.736 34.615 19.41 19.41 34.00 3.06
4751 19933 4.079212 AGGTCTGCCCATGTTGGTTATAAT 60.079 41.667 0.00 0.00 35.17 1.28
4752 19934 3.268334 AGGTCTGCCCATGTTGGTTATAA 59.732 43.478 0.00 0.00 35.17 0.98
4763 19945 4.446889 GGATGAAAATCTAGGTCTGCCCAT 60.447 45.833 0.00 0.00 34.66 4.00
4784 19969 1.257743 CCTTGTCTCGAGTTCCAGGA 58.742 55.000 13.13 0.00 0.00 3.86
4787 19972 2.818432 GAGTACCTTGTCTCGAGTTCCA 59.182 50.000 13.13 5.25 0.00 3.53
4842 20027 2.983592 GGAAAGTGGTGGTGGCGG 60.984 66.667 0.00 0.00 0.00 6.13
4843 20028 1.966451 GAGGAAAGTGGTGGTGGCG 60.966 63.158 0.00 0.00 0.00 5.69
4845 20030 2.162681 GATTGAGGAAAGTGGTGGTGG 58.837 52.381 0.00 0.00 0.00 4.61
4860 20047 1.679944 GCTTGTAGCTGCTGGGATTGA 60.680 52.381 13.43 0.00 38.45 2.57
4900 20089 4.581824 GGGTATGGTTCTGTAGTCACGATA 59.418 45.833 0.00 0.00 0.00 2.92
4906 20095 3.181474 GCAGAGGGTATGGTTCTGTAGTC 60.181 52.174 3.07 0.00 40.29 2.59
4910 20099 0.537188 CGCAGAGGGTATGGTTCTGT 59.463 55.000 3.07 0.00 40.29 3.41
4913 20102 0.535335 TGACGCAGAGGGTATGGTTC 59.465 55.000 0.00 0.00 0.00 3.62
4966 20160 4.021894 GGCTCTCACTCTCTTCAGTTTACA 60.022 45.833 0.00 0.00 0.00 2.41
4968 20162 3.191581 CGGCTCTCACTCTCTTCAGTTTA 59.808 47.826 0.00 0.00 0.00 2.01
4976 20170 1.621992 TTTGACGGCTCTCACTCTCT 58.378 50.000 0.00 0.00 0.00 3.10
4977 20171 2.062519 GTTTTGACGGCTCTCACTCTC 58.937 52.381 0.00 0.00 0.00 3.20
5019 20213 1.379443 TAGCGAGGATGTGGGACGT 60.379 57.895 0.00 0.00 0.00 4.34
5021 20215 1.337387 GTACTAGCGAGGATGTGGGAC 59.663 57.143 0.00 0.00 0.00 4.46
5026 20220 1.674962 GGTTCGTACTAGCGAGGATGT 59.325 52.381 0.00 0.00 42.10 3.06
5029 20223 1.089920 GTGGTTCGTACTAGCGAGGA 58.910 55.000 0.00 0.00 42.10 3.71
5034 20228 1.517913 GCCGGTGGTTCGTACTAGC 60.518 63.158 1.90 0.00 0.00 3.42
5035 20229 0.457337 GTGCCGGTGGTTCGTACTAG 60.457 60.000 1.90 0.00 0.00 2.57
5036 20230 1.586028 GTGCCGGTGGTTCGTACTA 59.414 57.895 1.90 0.00 0.00 1.82
5037 20231 2.341176 GTGCCGGTGGTTCGTACT 59.659 61.111 1.90 0.00 0.00 2.73
5038 20232 2.739671 GGTGCCGGTGGTTCGTAC 60.740 66.667 1.90 0.00 0.00 3.67
5049 20252 2.029380 TCATTATGTAGATCCGGTGCCG 60.029 50.000 0.00 3.25 39.44 5.69
5051 20254 6.204688 TGAAATTCATTATGTAGATCCGGTGC 59.795 38.462 0.00 0.00 0.00 5.01
5062 20265 8.421249 TGAAGGGTCTTTGAAATTCATTATGT 57.579 30.769 0.00 0.00 0.00 2.29
5063 20266 9.880157 ATTGAAGGGTCTTTGAAATTCATTATG 57.120 29.630 0.00 0.00 0.00 1.90
5065 20268 9.087871 TCATTGAAGGGTCTTTGAAATTCATTA 57.912 29.630 0.00 0.00 0.00 1.90
5068 20271 6.239289 GGTCATTGAAGGGTCTTTGAAATTCA 60.239 38.462 0.00 0.00 0.00 2.57
5072 20275 3.568007 CGGTCATTGAAGGGTCTTTGAAA 59.432 43.478 0.00 0.00 0.00 2.69
5074 20277 2.778299 CGGTCATTGAAGGGTCTTTGA 58.222 47.619 0.00 0.00 0.00 2.69
5075 20278 1.200020 GCGGTCATTGAAGGGTCTTTG 59.800 52.381 0.00 0.00 0.00 2.77
5076 20279 1.073923 AGCGGTCATTGAAGGGTCTTT 59.926 47.619 0.00 0.00 0.00 2.52
5086 20290 0.524816 GCAGATTGCAGCGGTCATTG 60.525 55.000 0.00 0.00 44.26 2.82
5087 20291 1.805254 GCAGATTGCAGCGGTCATT 59.195 52.632 0.00 0.00 44.26 2.57
5116 20320 1.398390 GAGCGTTTAGGCATCAACCAG 59.602 52.381 0.00 0.00 34.64 4.00
5147 20351 1.070786 TGGCTTTCGGGAGACACAC 59.929 57.895 0.00 0.00 39.59 3.82
5148 20352 3.557220 TGGCTTTCGGGAGACACA 58.443 55.556 0.00 0.00 39.59 3.72
5157 20361 2.563086 GATGCGTTCGGTGGCTTTCG 62.563 60.000 0.00 0.00 0.00 3.46
5158 20362 1.134694 GATGCGTTCGGTGGCTTTC 59.865 57.895 0.00 0.00 0.00 2.62
5159 20363 1.577328 CTGATGCGTTCGGTGGCTTT 61.577 55.000 0.00 0.00 0.00 3.51
5160 20364 2.031919 TGATGCGTTCGGTGGCTT 59.968 55.556 0.00 0.00 0.00 4.35
5161 20365 2.434884 CTGATGCGTTCGGTGGCT 60.435 61.111 0.00 0.00 0.00 4.75
5162 20366 2.434185 TCTGATGCGTTCGGTGGC 60.434 61.111 0.00 0.00 32.10 5.01
5163 20367 1.811266 CCTCTGATGCGTTCGGTGG 60.811 63.158 2.98 2.98 37.87 4.61
5164 20368 1.079819 ACCTCTGATGCGTTCGGTG 60.080 57.895 0.00 0.00 32.10 4.94
5165 20369 1.079819 CACCTCTGATGCGTTCGGT 60.080 57.895 0.00 0.00 32.10 4.69
5166 20370 0.172578 TACACCTCTGATGCGTTCGG 59.827 55.000 0.00 0.00 0.00 4.30
5167 20371 1.550065 CTACACCTCTGATGCGTTCG 58.450 55.000 0.00 0.00 0.00 3.95
5168 20372 1.281899 GCTACACCTCTGATGCGTTC 58.718 55.000 0.00 0.00 0.00 3.95
5169 20373 0.608130 TGCTACACCTCTGATGCGTT 59.392 50.000 0.00 0.00 0.00 4.84
5170 20374 0.174389 CTGCTACACCTCTGATGCGT 59.826 55.000 0.00 0.00 0.00 5.24
5171 20375 1.150567 GCTGCTACACCTCTGATGCG 61.151 60.000 0.00 0.00 0.00 4.73
5172 20376 0.107993 TGCTGCTACACCTCTGATGC 60.108 55.000 0.00 0.00 0.00 3.91
5173 20377 2.481854 GATGCTGCTACACCTCTGATG 58.518 52.381 0.00 0.00 0.00 3.07
5174 20378 1.068281 CGATGCTGCTACACCTCTGAT 59.932 52.381 0.00 0.00 0.00 2.90
5175 20379 0.457443 CGATGCTGCTACACCTCTGA 59.543 55.000 0.00 0.00 0.00 3.27
5176 20380 0.457443 TCGATGCTGCTACACCTCTG 59.543 55.000 0.00 0.00 0.00 3.35
5177 20381 0.457851 GTCGATGCTGCTACACCTCT 59.542 55.000 0.00 0.00 0.00 3.69
5178 20382 0.528684 GGTCGATGCTGCTACACCTC 60.529 60.000 0.00 0.00 0.00 3.85
5179 20383 0.972983 AGGTCGATGCTGCTACACCT 60.973 55.000 0.00 4.36 0.00 4.00
5180 20384 0.528684 GAGGTCGATGCTGCTACACC 60.529 60.000 0.00 1.97 0.00 4.16
5181 20385 0.528684 GGAGGTCGATGCTGCTACAC 60.529 60.000 0.00 0.00 0.00 2.90
5182 20386 0.970427 TGGAGGTCGATGCTGCTACA 60.970 55.000 0.00 0.00 0.00 2.74
5183 20387 0.528684 GTGGAGGTCGATGCTGCTAC 60.529 60.000 0.00 0.00 0.00 3.58
5184 20388 0.970427 TGTGGAGGTCGATGCTGCTA 60.970 55.000 0.00 0.00 0.00 3.49
5185 20389 1.620739 ATGTGGAGGTCGATGCTGCT 61.621 55.000 0.00 0.00 0.00 4.24
5186 20390 1.153289 ATGTGGAGGTCGATGCTGC 60.153 57.895 0.00 0.00 0.00 5.25
5187 20391 0.176449 TGATGTGGAGGTCGATGCTG 59.824 55.000 0.00 0.00 0.00 4.41
5188 20392 0.176680 GTGATGTGGAGGTCGATGCT 59.823 55.000 0.00 0.00 0.00 3.79
5189 20393 1.148157 CGTGATGTGGAGGTCGATGC 61.148 60.000 0.00 0.00 0.00 3.91
5190 20394 0.173481 ACGTGATGTGGAGGTCGATG 59.827 55.000 0.00 0.00 0.00 3.84
5191 20395 0.173481 CACGTGATGTGGAGGTCGAT 59.827 55.000 10.90 0.00 45.21 3.59
5192 20396 1.584495 CACGTGATGTGGAGGTCGA 59.416 57.895 10.90 0.00 45.21 4.20
5193 20397 4.169102 CACGTGATGTGGAGGTCG 57.831 61.111 10.90 0.00 45.21 4.79
5202 20406 1.468914 TCCTTCGAGAGACACGTGATG 59.531 52.381 25.01 4.90 41.84 3.07
5203 20407 1.822506 TCCTTCGAGAGACACGTGAT 58.177 50.000 25.01 10.43 41.84 3.06
5204 20408 1.468914 CATCCTTCGAGAGACACGTGA 59.531 52.381 25.01 0.00 41.84 4.35
5205 20409 1.901538 CATCCTTCGAGAGACACGTG 58.098 55.000 15.48 15.48 41.84 4.49
5206 20410 0.171455 GCATCCTTCGAGAGACACGT 59.829 55.000 0.00 0.00 41.84 4.49
5207 20411 0.526524 GGCATCCTTCGAGAGACACG 60.527 60.000 0.00 0.00 41.84 4.49
5208 20412 0.526524 CGGCATCCTTCGAGAGACAC 60.527 60.000 0.00 0.00 41.84 3.67
5209 20413 0.679960 TCGGCATCCTTCGAGAGACA 60.680 55.000 0.00 0.00 41.84 3.41
5210 20414 0.456221 TTCGGCATCCTTCGAGAGAC 59.544 55.000 0.00 0.00 41.84 3.36
5211 20415 0.456221 GTTCGGCATCCTTCGAGAGA 59.544 55.000 0.00 0.00 36.72 3.10
5212 20416 0.173481 TGTTCGGCATCCTTCGAGAG 59.827 55.000 0.00 0.00 36.72 3.20
5213 20417 0.173481 CTGTTCGGCATCCTTCGAGA 59.827 55.000 0.00 0.00 36.72 4.04
5214 20418 0.173481 TCTGTTCGGCATCCTTCGAG 59.827 55.000 0.00 0.00 36.72 4.04
5215 20419 0.606096 TTCTGTTCGGCATCCTTCGA 59.394 50.000 0.00 0.00 0.00 3.71
5222 20426 2.146342 CACTTCTGTTCTGTTCGGCAT 58.854 47.619 0.00 0.00 0.00 4.40
5223 20427 1.581934 CACTTCTGTTCTGTTCGGCA 58.418 50.000 0.00 0.00 0.00 5.69
5230 20434 1.467734 GGCTGATGCACTTCTGTTCTG 59.532 52.381 0.00 0.00 41.91 3.02
5231 20435 1.072806 TGGCTGATGCACTTCTGTTCT 59.927 47.619 0.00 0.00 41.91 3.01
5234 20438 1.747709 GATGGCTGATGCACTTCTGT 58.252 50.000 0.00 0.00 41.91 3.41
5239 20443 1.903294 ACTCGATGGCTGATGCACT 59.097 52.632 0.00 0.00 41.91 4.40
5240 20444 4.528674 ACTCGATGGCTGATGCAC 57.471 55.556 0.00 0.00 41.91 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.