Multiple sequence alignment - TraesCS6A01G043200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G043200 chr6A 100.000 2477 0 0 1 2477 22683641 22686117 0.000000e+00 4575.0
1 TraesCS6A01G043200 chr6A 94.796 269 14 0 235 503 406899496 406899764 1.060000e-113 420.0
2 TraesCS6A01G043200 chr6B 87.982 1348 89 33 700 1998 39180402 39181725 0.000000e+00 1524.0
3 TraesCS6A01G043200 chr6B 87.115 357 31 11 2064 2416 39181815 39182160 8.310000e-105 390.0
4 TraesCS6A01G043200 chr6B 97.297 37 0 1 1959 1994 616474521 616474485 7.400000e-06 62.1
5 TraesCS6A01G043200 chr6D 89.606 1193 73 24 681 1852 24219403 24220565 0.000000e+00 1469.0
6 TraesCS6A01G043200 chr6D 86.526 475 32 13 2026 2477 24220752 24221217 6.150000e-136 494.0
7 TraesCS6A01G043200 chr6D 92.920 113 8 0 1889 2001 24220562 24220674 5.480000e-37 165.0
8 TraesCS6A01G043200 chr5B 83.067 1063 102 35 688 1712 232293641 232294663 0.000000e+00 894.0
9 TraesCS6A01G043200 chr5A 82.941 1061 104 33 688 1714 285395533 285396550 0.000000e+00 885.0
10 TraesCS6A01G043200 chr5A 95.437 263 12 0 242 504 635455821 635455559 1.060000e-113 420.0
11 TraesCS6A01G043200 chr5D 81.996 922 65 35 829 1711 216154082 216154941 0.000000e+00 689.0
12 TraesCS6A01G043200 chr3A 95.817 263 10 1 241 502 509839955 509840217 8.190000e-115 424.0
13 TraesCS6A01G043200 chr3A 95.785 261 11 0 242 502 630925244 630924984 2.950000e-114 422.0
14 TraesCS6A01G043200 chr3A 94.340 265 14 1 242 505 712953194 712952930 2.970000e-109 405.0
15 TraesCS6A01G043200 chr1A 95.785 261 11 0 242 502 287430619 287430879 2.950000e-114 422.0
16 TraesCS6A01G043200 chr7A 95.057 263 13 0 242 504 33371298 33371036 4.930000e-112 414.0
17 TraesCS6A01G043200 chr7A 80.137 292 27 14 2208 2477 91662115 91661833 3.250000e-44 189.0
18 TraesCS6A01G043200 chr4A 94.717 265 13 1 239 503 556696458 556696195 6.380000e-111 411.0
19 TraesCS6A01G043200 chr4A 94.656 262 14 0 241 502 551042765 551043026 8.250000e-110 407.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G043200 chr6A 22683641 22686117 2476 False 4575.000000 4575 100.0000 1 2477 1 chr6A.!!$F1 2476
1 TraesCS6A01G043200 chr6B 39180402 39182160 1758 False 957.000000 1524 87.5485 700 2416 2 chr6B.!!$F1 1716
2 TraesCS6A01G043200 chr6D 24219403 24221217 1814 False 709.333333 1469 89.6840 681 2477 3 chr6D.!!$F1 1796
3 TraesCS6A01G043200 chr5B 232293641 232294663 1022 False 894.000000 894 83.0670 688 1712 1 chr5B.!!$F1 1024
4 TraesCS6A01G043200 chr5A 285395533 285396550 1017 False 885.000000 885 82.9410 688 1714 1 chr5A.!!$F1 1026
5 TraesCS6A01G043200 chr5D 216154082 216154941 859 False 689.000000 689 81.9960 829 1711 1 chr5D.!!$F1 882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.035317 ACTTGGTGCGAGAATGAGCA 59.965 50.0 0.0 0.0 41.55 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 1888 0.321346 TTGAGCAGCGGAGTCATTCA 59.679 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.160137 AACTTGGTGCGAGAATGAGC 58.840 50.000 0.00 0.00 0.00 4.26
20 21 0.035317 ACTTGGTGCGAGAATGAGCA 59.965 50.000 0.00 0.00 41.55 4.26
21 22 0.725686 CTTGGTGCGAGAATGAGCAG 59.274 55.000 0.00 0.00 44.70 4.24
22 23 0.035317 TTGGTGCGAGAATGAGCAGT 59.965 50.000 0.00 0.00 44.70 4.40
23 24 0.671472 TGGTGCGAGAATGAGCAGTG 60.671 55.000 0.00 0.00 44.70 3.66
24 25 1.364626 GGTGCGAGAATGAGCAGTGG 61.365 60.000 0.00 0.00 44.70 4.00
25 26 1.742880 TGCGAGAATGAGCAGTGGC 60.743 57.895 0.00 0.00 38.59 5.01
26 27 1.742880 GCGAGAATGAGCAGTGGCA 60.743 57.895 0.00 0.00 44.61 4.92
27 28 1.703438 GCGAGAATGAGCAGTGGCAG 61.703 60.000 0.00 0.00 44.61 4.85
28 29 0.108472 CGAGAATGAGCAGTGGCAGA 60.108 55.000 0.00 0.00 44.61 4.26
29 30 1.654317 GAGAATGAGCAGTGGCAGAG 58.346 55.000 0.00 0.00 44.61 3.35
30 31 0.392729 AGAATGAGCAGTGGCAGAGC 60.393 55.000 3.06 3.06 44.61 4.09
31 32 0.675837 GAATGAGCAGTGGCAGAGCA 60.676 55.000 12.85 0.00 44.61 4.26
32 33 0.677098 AATGAGCAGTGGCAGAGCAG 60.677 55.000 12.85 0.00 44.61 4.24
33 34 2.436292 GAGCAGTGGCAGAGCAGG 60.436 66.667 12.85 0.00 44.61 4.85
34 35 3.247648 AGCAGTGGCAGAGCAGGT 61.248 61.111 12.85 0.00 44.61 4.00
35 36 2.282040 GCAGTGGCAGAGCAGGTT 60.282 61.111 6.24 0.00 40.72 3.50
36 37 2.331132 GCAGTGGCAGAGCAGGTTC 61.331 63.158 6.24 0.00 40.72 3.62
37 38 1.374190 CAGTGGCAGAGCAGGTTCT 59.626 57.895 0.00 0.00 0.00 3.01
38 39 0.954449 CAGTGGCAGAGCAGGTTCTG 60.954 60.000 8.57 8.57 45.85 3.02
48 49 3.244764 CAGGTTCTGCATGCACTCT 57.755 52.632 18.46 8.79 0.00 3.24
49 50 2.391616 CAGGTTCTGCATGCACTCTA 57.608 50.000 18.46 0.00 0.00 2.43
50 51 2.277969 CAGGTTCTGCATGCACTCTAG 58.722 52.381 18.46 6.94 0.00 2.43
51 52 1.905215 AGGTTCTGCATGCACTCTAGT 59.095 47.619 18.46 0.00 0.00 2.57
52 53 2.304180 AGGTTCTGCATGCACTCTAGTT 59.696 45.455 18.46 0.00 0.00 2.24
53 54 2.675348 GGTTCTGCATGCACTCTAGTTC 59.325 50.000 18.46 4.68 0.00 3.01
54 55 2.675348 GTTCTGCATGCACTCTAGTTCC 59.325 50.000 18.46 0.00 0.00 3.62
55 56 2.182827 TCTGCATGCACTCTAGTTCCT 58.817 47.619 18.46 0.00 0.00 3.36
56 57 2.093816 TCTGCATGCACTCTAGTTCCTG 60.094 50.000 18.46 2.23 0.00 3.86
57 58 1.065926 TGCATGCACTCTAGTTCCTGG 60.066 52.381 18.46 0.00 0.00 4.45
58 59 1.065854 GCATGCACTCTAGTTCCTGGT 60.066 52.381 14.21 0.00 0.00 4.00
59 60 2.898705 CATGCACTCTAGTTCCTGGTC 58.101 52.381 0.00 0.00 0.00 4.02
60 61 2.009681 TGCACTCTAGTTCCTGGTCA 57.990 50.000 0.00 0.00 0.00 4.02
61 62 1.618837 TGCACTCTAGTTCCTGGTCAC 59.381 52.381 0.00 0.00 0.00 3.67
62 63 1.618837 GCACTCTAGTTCCTGGTCACA 59.381 52.381 0.00 0.00 0.00 3.58
63 64 2.353208 GCACTCTAGTTCCTGGTCACAG 60.353 54.545 0.00 0.00 44.51 3.66
75 76 3.904800 TGGTCACAGAGAAACACAAGA 57.095 42.857 0.00 0.00 0.00 3.02
76 77 3.797039 TGGTCACAGAGAAACACAAGAG 58.203 45.455 0.00 0.00 0.00 2.85
77 78 3.450817 TGGTCACAGAGAAACACAAGAGA 59.549 43.478 0.00 0.00 0.00 3.10
78 79 3.804873 GGTCACAGAGAAACACAAGAGAC 59.195 47.826 0.00 0.00 0.00 3.36
79 80 3.804873 GTCACAGAGAAACACAAGAGACC 59.195 47.826 0.00 0.00 0.00 3.85
80 81 3.706594 TCACAGAGAAACACAAGAGACCT 59.293 43.478 0.00 0.00 0.00 3.85
81 82 4.054671 CACAGAGAAACACAAGAGACCTC 58.945 47.826 0.00 0.00 0.00 3.85
82 83 3.706594 ACAGAGAAACACAAGAGACCTCA 59.293 43.478 0.00 0.00 0.00 3.86
83 84 4.346418 ACAGAGAAACACAAGAGACCTCAT 59.654 41.667 0.00 0.00 0.00 2.90
84 85 4.689812 CAGAGAAACACAAGAGACCTCATG 59.310 45.833 0.00 0.38 34.75 3.07
85 86 3.999663 GAGAAACACAAGAGACCTCATGG 59.000 47.826 7.11 0.05 33.05 3.66
86 87 2.867109 AACACAAGAGACCTCATGGG 57.133 50.000 3.26 3.26 37.68 4.00
87 88 0.987294 ACACAAGAGACCTCATGGGG 59.013 55.000 11.11 11.11 36.14 4.96
88 89 1.279496 CACAAGAGACCTCATGGGGA 58.721 55.000 21.59 0.00 40.03 4.81
89 90 1.630369 CACAAGAGACCTCATGGGGAA 59.370 52.381 21.59 0.00 40.03 3.97
90 91 2.040278 CACAAGAGACCTCATGGGGAAA 59.960 50.000 21.59 0.00 40.03 3.13
91 92 2.307098 ACAAGAGACCTCATGGGGAAAG 59.693 50.000 21.59 4.19 40.03 2.62
92 93 0.915364 AGAGACCTCATGGGGAAAGC 59.085 55.000 21.59 4.46 40.03 3.51
93 94 0.106967 GAGACCTCATGGGGAAAGCC 60.107 60.000 21.59 1.56 40.03 4.35
94 95 1.452108 GACCTCATGGGGAAAGCCG 60.452 63.158 21.59 0.00 40.03 5.52
95 96 2.830370 CCTCATGGGGAAAGCCGC 60.830 66.667 5.34 0.00 46.73 6.53
101 102 3.841870 GGGGAAAGCCGCAATAGG 58.158 61.111 0.00 0.00 45.89 2.57
109 110 4.635769 CCGCAATAGGCAGTCCAA 57.364 55.556 0.00 0.00 45.17 3.53
110 111 2.098293 CCGCAATAGGCAGTCCAAC 58.902 57.895 0.00 0.00 45.17 3.77
111 112 0.676466 CCGCAATAGGCAGTCCAACA 60.676 55.000 0.00 0.00 45.17 3.33
112 113 0.447801 CGCAATAGGCAGTCCAACAC 59.552 55.000 0.00 0.00 45.17 3.32
113 114 0.811281 GCAATAGGCAGTCCAACACC 59.189 55.000 0.00 0.00 43.97 4.16
114 115 1.086696 CAATAGGCAGTCCAACACCG 58.913 55.000 0.00 0.00 33.74 4.94
115 116 0.035439 AATAGGCAGTCCAACACCGG 60.035 55.000 0.00 0.00 33.74 5.28
116 117 1.198759 ATAGGCAGTCCAACACCGGT 61.199 55.000 0.00 0.00 33.74 5.28
117 118 1.412453 TAGGCAGTCCAACACCGGTT 61.412 55.000 2.97 0.00 37.87 4.44
118 119 1.826487 GGCAGTCCAACACCGGTTT 60.826 57.895 2.97 0.00 34.21 3.27
119 120 1.358759 GCAGTCCAACACCGGTTTG 59.641 57.895 2.97 13.17 34.21 2.93
120 121 2.029743 CAGTCCAACACCGGTTTGG 58.970 57.895 28.49 28.49 46.41 3.28
121 122 1.826487 AGTCCAACACCGGTTTGGC 60.826 57.895 29.09 24.81 43.94 4.52
122 123 2.122167 GTCCAACACCGGTTTGGCA 61.122 57.895 29.09 20.33 43.94 4.92
123 124 1.152652 TCCAACACCGGTTTGGCAT 60.153 52.632 29.09 0.91 43.94 4.40
124 125 0.757188 TCCAACACCGGTTTGGCATT 60.757 50.000 29.09 8.71 43.94 3.56
125 126 0.319469 CCAACACCGGTTTGGCATTC 60.319 55.000 25.50 0.00 43.94 2.67
126 127 0.319469 CAACACCGGTTTGGCATTCC 60.319 55.000 2.97 0.00 43.94 3.01
127 128 0.757188 AACACCGGTTTGGCATTCCA 60.757 50.000 2.97 0.00 43.94 3.53
137 138 3.576078 TTGGCATTCCAATACCGATCT 57.424 42.857 0.00 0.00 46.89 2.75
138 139 3.576078 TGGCATTCCAATACCGATCTT 57.424 42.857 0.00 0.00 39.99 2.40
139 140 3.897239 TGGCATTCCAATACCGATCTTT 58.103 40.909 0.00 0.00 39.99 2.52
140 141 4.277476 TGGCATTCCAATACCGATCTTTT 58.723 39.130 0.00 0.00 39.99 2.27
141 142 4.097741 TGGCATTCCAATACCGATCTTTTG 59.902 41.667 0.00 0.00 39.99 2.44
142 143 4.499696 GGCATTCCAATACCGATCTTTTGG 60.500 45.833 6.53 6.53 39.98 3.28
143 144 4.097892 GCATTCCAATACCGATCTTTTGGT 59.902 41.667 10.64 4.55 42.66 3.67
144 145 5.733373 GCATTCCAATACCGATCTTTTGGTC 60.733 44.000 10.64 0.00 40.38 4.02
145 146 4.561500 TCCAATACCGATCTTTTGGTCA 57.438 40.909 10.64 0.00 40.38 4.02
146 147 4.258543 TCCAATACCGATCTTTTGGTCAC 58.741 43.478 10.64 0.00 40.38 3.67
147 148 4.006989 CCAATACCGATCTTTTGGTCACA 58.993 43.478 0.00 0.00 40.38 3.58
148 149 4.640201 CCAATACCGATCTTTTGGTCACAT 59.360 41.667 0.00 0.00 40.38 3.21
149 150 5.220854 CCAATACCGATCTTTTGGTCACATC 60.221 44.000 0.00 0.00 40.38 3.06
150 151 3.417069 ACCGATCTTTTGGTCACATCA 57.583 42.857 0.00 0.00 34.13 3.07
151 152 3.750371 ACCGATCTTTTGGTCACATCAA 58.250 40.909 0.00 0.00 34.13 2.57
152 153 4.335416 ACCGATCTTTTGGTCACATCAAT 58.665 39.130 0.00 0.00 34.13 2.57
153 154 4.156556 ACCGATCTTTTGGTCACATCAATG 59.843 41.667 0.00 0.00 34.13 2.82
154 155 4.156556 CCGATCTTTTGGTCACATCAATGT 59.843 41.667 0.00 0.00 42.84 2.71
155 156 5.327091 CGATCTTTTGGTCACATCAATGTC 58.673 41.667 0.00 0.00 39.39 3.06
156 157 5.122869 CGATCTTTTGGTCACATCAATGTCT 59.877 40.000 0.00 0.00 39.39 3.41
157 158 6.348786 CGATCTTTTGGTCACATCAATGTCTT 60.349 38.462 0.00 0.00 39.39 3.01
158 159 6.713762 TCTTTTGGTCACATCAATGTCTTT 57.286 33.333 0.00 0.00 39.39 2.52
159 160 7.815840 TCTTTTGGTCACATCAATGTCTTTA 57.184 32.000 0.00 0.00 39.39 1.85
160 161 7.874940 TCTTTTGGTCACATCAATGTCTTTAG 58.125 34.615 0.00 0.00 39.39 1.85
161 162 7.502226 TCTTTTGGTCACATCAATGTCTTTAGT 59.498 33.333 0.00 0.00 39.39 2.24
162 163 7.581213 TTTGGTCACATCAATGTCTTTAGTT 57.419 32.000 0.00 0.00 39.39 2.24
163 164 6.801539 TGGTCACATCAATGTCTTTAGTTC 57.198 37.500 0.00 0.00 39.39 3.01
164 165 5.705441 TGGTCACATCAATGTCTTTAGTTCC 59.295 40.000 0.00 0.00 39.39 3.62
165 166 5.940470 GGTCACATCAATGTCTTTAGTTCCT 59.060 40.000 0.00 0.00 39.39 3.36
166 167 6.431234 GGTCACATCAATGTCTTTAGTTCCTT 59.569 38.462 0.00 0.00 39.39 3.36
167 168 7.361286 GGTCACATCAATGTCTTTAGTTCCTTC 60.361 40.741 0.00 0.00 39.39 3.46
168 169 7.389053 GTCACATCAATGTCTTTAGTTCCTTCT 59.611 37.037 0.00 0.00 39.39 2.85
169 170 7.939039 TCACATCAATGTCTTTAGTTCCTTCTT 59.061 33.333 0.00 0.00 39.39 2.52
170 171 8.571336 CACATCAATGTCTTTAGTTCCTTCTTT 58.429 33.333 0.00 0.00 39.39 2.52
171 172 8.787852 ACATCAATGTCTTTAGTTCCTTCTTTC 58.212 33.333 0.00 0.00 35.87 2.62
172 173 9.007901 CATCAATGTCTTTAGTTCCTTCTTTCT 57.992 33.333 0.00 0.00 0.00 2.52
173 174 8.980481 TCAATGTCTTTAGTTCCTTCTTTCTT 57.020 30.769 0.00 0.00 0.00 2.52
174 175 9.408648 TCAATGTCTTTAGTTCCTTCTTTCTTT 57.591 29.630 0.00 0.00 0.00 2.52
186 187 9.803315 GTTCCTTCTTTCTTTAGAATGTTTTGT 57.197 29.630 5.59 0.00 33.89 2.83
257 258 6.455690 AAAAAGATACTTCCTCCAGTCCTT 57.544 37.500 0.00 0.00 0.00 3.36
258 259 6.455690 AAAAGATACTTCCTCCAGTCCTTT 57.544 37.500 0.00 0.00 34.14 3.11
259 260 6.455690 AAAGATACTTCCTCCAGTCCTTTT 57.544 37.500 0.00 0.00 31.19 2.27
260 261 6.455690 AAGATACTTCCTCCAGTCCTTTTT 57.544 37.500 0.00 0.00 0.00 1.94
261 262 7.569599 AAGATACTTCCTCCAGTCCTTTTTA 57.430 36.000 0.00 0.00 0.00 1.52
262 263 6.948589 AGATACTTCCTCCAGTCCTTTTTAC 58.051 40.000 0.00 0.00 0.00 2.01
263 264 6.731448 AGATACTTCCTCCAGTCCTTTTTACT 59.269 38.462 0.00 0.00 0.00 2.24
264 265 5.230323 ACTTCCTCCAGTCCTTTTTACTC 57.770 43.478 0.00 0.00 0.00 2.59
265 266 4.908481 ACTTCCTCCAGTCCTTTTTACTCT 59.092 41.667 0.00 0.00 0.00 3.24
266 267 4.891992 TCCTCCAGTCCTTTTTACTCTG 57.108 45.455 0.00 0.00 0.00 3.35
267 268 3.008049 TCCTCCAGTCCTTTTTACTCTGC 59.992 47.826 0.00 0.00 0.00 4.26
268 269 3.244561 CCTCCAGTCCTTTTTACTCTGCA 60.245 47.826 0.00 0.00 0.00 4.41
269 270 4.566488 CCTCCAGTCCTTTTTACTCTGCAT 60.566 45.833 0.00 0.00 0.00 3.96
270 271 5.338381 CCTCCAGTCCTTTTTACTCTGCATA 60.338 44.000 0.00 0.00 0.00 3.14
271 272 6.313519 TCCAGTCCTTTTTACTCTGCATAT 57.686 37.500 0.00 0.00 0.00 1.78
272 273 6.721318 TCCAGTCCTTTTTACTCTGCATATT 58.279 36.000 0.00 0.00 0.00 1.28
273 274 7.857456 TCCAGTCCTTTTTACTCTGCATATTA 58.143 34.615 0.00 0.00 0.00 0.98
274 275 7.987458 TCCAGTCCTTTTTACTCTGCATATTAG 59.013 37.037 0.00 0.00 0.00 1.73
275 276 7.987458 CCAGTCCTTTTTACTCTGCATATTAGA 59.013 37.037 0.00 0.00 0.00 2.10
276 277 9.553064 CAGTCCTTTTTACTCTGCATATTAGAT 57.447 33.333 0.00 0.00 0.00 1.98
280 281 9.956720 CCTTTTTACTCTGCATATTAGATTTGG 57.043 33.333 0.00 0.00 0.00 3.28
281 282 9.956720 CTTTTTACTCTGCATATTAGATTTGGG 57.043 33.333 0.00 0.00 0.00 4.12
282 283 9.474313 TTTTTACTCTGCATATTAGATTTGGGT 57.526 29.630 0.00 0.00 0.00 4.51
283 284 8.677148 TTTACTCTGCATATTAGATTTGGGTC 57.323 34.615 0.00 0.00 0.00 4.46
284 285 6.252599 ACTCTGCATATTAGATTTGGGTCA 57.747 37.500 0.00 0.00 0.00 4.02
285 286 6.662755 ACTCTGCATATTAGATTTGGGTCAA 58.337 36.000 0.00 0.00 0.00 3.18
286 287 6.769822 ACTCTGCATATTAGATTTGGGTCAAG 59.230 38.462 0.00 0.00 0.00 3.02
287 288 6.662755 TCTGCATATTAGATTTGGGTCAAGT 58.337 36.000 0.00 0.00 0.00 3.16
288 289 6.767902 TCTGCATATTAGATTTGGGTCAAGTC 59.232 38.462 0.00 0.00 31.63 3.01
289 290 6.422333 TGCATATTAGATTTGGGTCAAGTCA 58.578 36.000 6.06 0.00 33.48 3.41
290 291 6.889177 TGCATATTAGATTTGGGTCAAGTCAA 59.111 34.615 6.06 0.58 33.48 3.18
291 292 7.395772 TGCATATTAGATTTGGGTCAAGTCAAA 59.604 33.333 6.06 0.00 33.48 2.69
292 293 7.702348 GCATATTAGATTTGGGTCAAGTCAAAC 59.298 37.037 6.06 0.00 35.97 2.93
293 294 8.960591 CATATTAGATTTGGGTCAAGTCAAACT 58.039 33.333 6.06 0.00 35.97 2.66
294 295 7.839680 ATTAGATTTGGGTCAAGTCAAACTT 57.160 32.000 6.06 0.00 39.39 2.66
295 296 7.654022 TTAGATTTGGGTCAAGTCAAACTTT 57.346 32.000 6.06 0.00 36.03 2.66
296 297 8.754991 TTAGATTTGGGTCAAGTCAAACTTTA 57.245 30.769 6.06 0.00 36.03 1.85
297 298 7.039313 AGATTTGGGTCAAGTCAAACTTTAC 57.961 36.000 6.06 0.00 36.03 2.01
298 299 6.605594 AGATTTGGGTCAAGTCAAACTTTACA 59.394 34.615 6.52 0.00 36.03 2.41
299 300 6.591750 TTTGGGTCAAGTCAAACTTTACAA 57.408 33.333 6.52 0.94 36.03 2.41
300 301 6.591750 TTGGGTCAAGTCAAACTTTACAAA 57.408 33.333 6.52 0.00 36.03 2.83
301 302 6.202516 TGGGTCAAGTCAAACTTTACAAAG 57.797 37.500 6.52 0.13 36.03 2.77
401 402 9.995003 AATGAATCTAACAAAATTTACTTGGCA 57.005 25.926 0.00 0.00 0.00 4.92
403 404 9.995003 TGAATCTAACAAAATTTACTTGGCATT 57.005 25.926 0.00 0.00 0.00 3.56
405 406 9.777297 AATCTAACAAAATTTACTTGGCATTGT 57.223 25.926 0.00 0.00 0.00 2.71
411 412 9.336171 ACAAAATTTACTTGGCATTGTAAATGT 57.664 25.926 25.64 21.31 43.97 2.71
449 450 9.967346 TCTATAAATTCGGTCAAAGTAGAGATG 57.033 33.333 0.00 0.00 0.00 2.90
450 451 5.803020 AAATTCGGTCAAAGTAGAGATGC 57.197 39.130 0.00 0.00 0.00 3.91
451 452 4.744795 ATTCGGTCAAAGTAGAGATGCT 57.255 40.909 0.00 0.00 0.00 3.79
452 453 4.537135 TTCGGTCAAAGTAGAGATGCTT 57.463 40.909 0.00 0.00 0.00 3.91
453 454 4.537135 TCGGTCAAAGTAGAGATGCTTT 57.463 40.909 0.00 0.00 35.55 3.51
462 463 5.991933 AGTAGAGATGCTTTGACTTCAGA 57.008 39.130 0.00 0.00 0.00 3.27
463 464 5.719173 AGTAGAGATGCTTTGACTTCAGAC 58.281 41.667 0.00 0.00 0.00 3.51
464 465 4.613925 AGAGATGCTTTGACTTCAGACA 57.386 40.909 0.00 0.00 0.00 3.41
465 466 4.965814 AGAGATGCTTTGACTTCAGACAA 58.034 39.130 0.00 0.00 0.00 3.18
466 467 5.371526 AGAGATGCTTTGACTTCAGACAAA 58.628 37.500 4.72 4.72 37.36 2.83
467 468 5.824624 AGAGATGCTTTGACTTCAGACAAAA 59.175 36.000 6.05 0.00 38.68 2.44
468 469 5.825507 AGATGCTTTGACTTCAGACAAAAC 58.174 37.500 6.05 3.02 38.68 2.43
469 470 5.591877 AGATGCTTTGACTTCAGACAAAACT 59.408 36.000 6.05 2.24 38.68 2.66
470 471 5.643379 TGCTTTGACTTCAGACAAAACTT 57.357 34.783 6.05 0.00 38.68 2.66
471 472 6.751514 TGCTTTGACTTCAGACAAAACTTA 57.248 33.333 6.05 0.00 38.68 2.24
472 473 7.333528 TGCTTTGACTTCAGACAAAACTTAT 57.666 32.000 6.05 0.00 38.68 1.73
473 474 8.445275 TGCTTTGACTTCAGACAAAACTTATA 57.555 30.769 6.05 0.00 38.68 0.98
474 475 9.066892 TGCTTTGACTTCAGACAAAACTTATAT 57.933 29.630 6.05 0.00 38.68 0.86
475 476 9.334693 GCTTTGACTTCAGACAAAACTTATATG 57.665 33.333 6.05 0.00 38.68 1.78
476 477 9.334693 CTTTGACTTCAGACAAAACTTATATGC 57.665 33.333 6.05 0.00 38.68 3.14
477 478 7.977789 TGACTTCAGACAAAACTTATATGCA 57.022 32.000 0.00 0.00 0.00 3.96
478 479 8.032952 TGACTTCAGACAAAACTTATATGCAG 57.967 34.615 0.00 0.00 0.00 4.41
479 480 7.877612 TGACTTCAGACAAAACTTATATGCAGA 59.122 33.333 0.00 0.00 0.00 4.26
480 481 8.034058 ACTTCAGACAAAACTTATATGCAGAC 57.966 34.615 0.00 0.00 0.00 3.51
481 482 7.880195 ACTTCAGACAAAACTTATATGCAGACT 59.120 33.333 0.00 0.00 0.00 3.24
482 483 9.371136 CTTCAGACAAAACTTATATGCAGACTA 57.629 33.333 0.00 0.00 0.00 2.59
483 484 9.719355 TTCAGACAAAACTTATATGCAGACTAA 57.281 29.630 0.00 0.00 0.00 2.24
484 485 9.719355 TCAGACAAAACTTATATGCAGACTAAA 57.281 29.630 0.00 0.00 0.00 1.85
491 492 8.507524 AACTTATATGCAGACTAAAAAGGACC 57.492 34.615 0.00 0.00 0.00 4.46
492 493 6.761714 ACTTATATGCAGACTAAAAAGGACCG 59.238 38.462 0.00 0.00 0.00 4.79
493 494 2.178912 TGCAGACTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
494 495 1.695242 TGCAGACTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
495 496 2.289444 TGCAGACTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
518 519 6.364568 GGGAGTACTACCCTTGTTTCTAAA 57.635 41.667 13.90 0.00 43.65 1.85
519 520 6.955364 GGGAGTACTACCCTTGTTTCTAAAT 58.045 40.000 13.90 0.00 43.65 1.40
520 521 8.082672 GGGAGTACTACCCTTGTTTCTAAATA 57.917 38.462 13.90 0.00 43.65 1.40
521 522 8.712103 GGGAGTACTACCCTTGTTTCTAAATAT 58.288 37.037 13.90 0.00 43.65 1.28
542 543 8.970691 AATATAAGACATTTTGCAGTTCACAC 57.029 30.769 0.00 0.00 0.00 3.82
543 544 4.717233 AAGACATTTTGCAGTTCACACA 57.283 36.364 0.00 0.00 0.00 3.72
544 545 4.924305 AGACATTTTGCAGTTCACACAT 57.076 36.364 0.00 0.00 0.00 3.21
545 546 6.389830 AAGACATTTTGCAGTTCACACATA 57.610 33.333 0.00 0.00 0.00 2.29
546 547 6.389830 AGACATTTTGCAGTTCACACATAA 57.610 33.333 0.00 0.00 0.00 1.90
547 548 6.985117 AGACATTTTGCAGTTCACACATAAT 58.015 32.000 0.00 0.00 0.00 1.28
548 549 6.864685 AGACATTTTGCAGTTCACACATAATG 59.135 34.615 11.29 11.29 38.15 1.90
549 550 5.406175 ACATTTTGCAGTTCACACATAATGC 59.594 36.000 12.14 0.00 36.69 3.56
550 551 4.581077 TTTGCAGTTCACACATAATGCA 57.419 36.364 0.00 0.00 41.54 3.96
552 553 4.581077 TGCAGTTCACACATAATGCAAA 57.419 36.364 0.00 0.00 40.43 3.68
553 554 5.136816 TGCAGTTCACACATAATGCAAAT 57.863 34.783 0.00 0.00 40.43 2.32
554 555 5.539979 TGCAGTTCACACATAATGCAAATT 58.460 33.333 0.00 0.00 40.43 1.82
555 556 5.634439 TGCAGTTCACACATAATGCAAATTC 59.366 36.000 0.00 0.00 40.43 2.17
556 557 5.634439 GCAGTTCACACATAATGCAAATTCA 59.366 36.000 0.00 0.00 33.92 2.57
557 558 6.145858 GCAGTTCACACATAATGCAAATTCAA 59.854 34.615 0.00 0.00 33.92 2.69
558 559 7.307278 GCAGTTCACACATAATGCAAATTCAAA 60.307 33.333 0.00 0.00 33.92 2.69
559 560 8.549548 CAGTTCACACATAATGCAAATTCAAAA 58.450 29.630 0.00 0.00 0.00 2.44
560 561 9.107177 AGTTCACACATAATGCAAATTCAAAAA 57.893 25.926 0.00 0.00 0.00 1.94
588 589 5.731599 TTGAACACACAAATTCAATTGCC 57.268 34.783 0.00 0.00 39.34 4.52
589 590 5.021033 TGAACACACAAATTCAATTGCCT 57.979 34.783 0.00 0.00 31.95 4.75
590 591 6.154203 TGAACACACAAATTCAATTGCCTA 57.846 33.333 0.00 0.00 31.95 3.93
591 592 6.577103 TGAACACACAAATTCAATTGCCTAA 58.423 32.000 0.00 0.00 31.95 2.69
592 593 7.044181 TGAACACACAAATTCAATTGCCTAAA 58.956 30.769 0.00 0.00 31.95 1.85
593 594 7.224362 TGAACACACAAATTCAATTGCCTAAAG 59.776 33.333 0.00 0.00 31.95 1.85
594 595 6.815089 ACACACAAATTCAATTGCCTAAAGA 58.185 32.000 0.00 0.00 33.52 2.52
595 596 6.925165 ACACACAAATTCAATTGCCTAAAGAG 59.075 34.615 0.00 0.00 33.52 2.85
596 597 6.925165 CACACAAATTCAATTGCCTAAAGAGT 59.075 34.615 0.00 0.00 33.52 3.24
597 598 8.081633 CACACAAATTCAATTGCCTAAAGAGTA 58.918 33.333 0.00 0.00 33.52 2.59
598 599 8.299570 ACACAAATTCAATTGCCTAAAGAGTAG 58.700 33.333 0.00 0.00 33.52 2.57
599 600 8.514594 CACAAATTCAATTGCCTAAAGAGTAGA 58.485 33.333 0.00 0.00 33.52 2.59
600 601 9.247861 ACAAATTCAATTGCCTAAAGAGTAGAT 57.752 29.630 0.00 0.00 33.52 1.98
601 602 9.512435 CAAATTCAATTGCCTAAAGAGTAGATG 57.488 33.333 0.00 0.00 0.00 2.90
602 603 7.814264 ATTCAATTGCCTAAAGAGTAGATGG 57.186 36.000 0.00 0.00 0.00 3.51
603 604 6.313519 TCAATTGCCTAAAGAGTAGATGGT 57.686 37.500 0.00 0.00 0.00 3.55
604 605 6.349300 TCAATTGCCTAAAGAGTAGATGGTC 58.651 40.000 0.00 0.00 0.00 4.02
605 606 4.755266 TTGCCTAAAGAGTAGATGGTCC 57.245 45.455 0.00 0.00 0.00 4.46
606 607 3.039011 TGCCTAAAGAGTAGATGGTCCC 58.961 50.000 0.00 0.00 0.00 4.46
607 608 3.039011 GCCTAAAGAGTAGATGGTCCCA 58.961 50.000 0.00 0.00 0.00 4.37
608 609 3.454812 GCCTAAAGAGTAGATGGTCCCAA 59.545 47.826 0.00 0.00 0.00 4.12
609 610 4.683671 GCCTAAAGAGTAGATGGTCCCAAC 60.684 50.000 0.00 0.00 0.00 3.77
610 611 3.611766 AAAGAGTAGATGGTCCCAACG 57.388 47.619 0.00 0.00 0.00 4.10
611 612 2.526888 AGAGTAGATGGTCCCAACGA 57.473 50.000 0.00 0.00 0.00 3.85
612 613 2.816411 AGAGTAGATGGTCCCAACGAA 58.184 47.619 0.00 0.00 0.00 3.85
613 614 3.170717 AGAGTAGATGGTCCCAACGAAA 58.829 45.455 0.00 0.00 0.00 3.46
614 615 3.056035 AGAGTAGATGGTCCCAACGAAAC 60.056 47.826 0.00 0.00 0.00 2.78
615 616 2.635915 AGTAGATGGTCCCAACGAAACA 59.364 45.455 0.00 0.00 0.00 2.83
616 617 2.185004 AGATGGTCCCAACGAAACAG 57.815 50.000 0.00 0.00 0.00 3.16
617 618 0.521735 GATGGTCCCAACGAAACAGC 59.478 55.000 0.00 0.00 0.00 4.40
618 619 1.234615 ATGGTCCCAACGAAACAGCG 61.235 55.000 0.00 0.00 37.29 5.18
619 620 2.251371 GTCCCAACGAAACAGCGC 59.749 61.111 0.00 0.00 33.86 5.92
620 621 2.110213 TCCCAACGAAACAGCGCT 59.890 55.556 2.64 2.64 33.86 5.92
621 622 1.959226 TCCCAACGAAACAGCGCTC 60.959 57.895 7.13 0.00 33.86 5.03
622 623 2.170985 CCAACGAAACAGCGCTCG 59.829 61.111 7.13 11.70 40.87 5.03
623 624 2.497628 CAACGAAACAGCGCTCGC 60.498 61.111 7.13 6.09 38.64 5.03
633 634 3.241059 GCGCTCGCTCGTGTAGTG 61.241 66.667 0.00 0.00 38.26 2.74
634 635 2.577112 CGCTCGCTCGTGTAGTGG 60.577 66.667 0.00 0.00 36.31 4.00
635 636 2.881352 GCTCGCTCGTGTAGTGGC 60.881 66.667 0.00 0.00 36.31 5.01
636 637 2.878429 CTCGCTCGTGTAGTGGCT 59.122 61.111 0.00 0.00 36.31 4.75
637 638 1.989966 GCTCGCTCGTGTAGTGGCTA 61.990 60.000 0.00 0.00 36.31 3.93
638 639 0.663688 CTCGCTCGTGTAGTGGCTAT 59.336 55.000 0.00 0.00 36.31 2.97
639 640 1.871676 CTCGCTCGTGTAGTGGCTATA 59.128 52.381 0.00 0.00 36.31 1.31
640 641 2.484651 CTCGCTCGTGTAGTGGCTATAT 59.515 50.000 0.00 0.00 36.31 0.86
641 642 3.667360 TCGCTCGTGTAGTGGCTATATA 58.333 45.455 0.00 0.00 36.31 0.86
642 643 3.683340 TCGCTCGTGTAGTGGCTATATAG 59.317 47.826 5.30 5.30 36.31 1.31
655 656 4.999751 GCTATATAGCTTGCTGTTGTCC 57.000 45.455 24.63 0.00 45.62 4.02
656 657 3.748568 GCTATATAGCTTGCTGTTGTCCC 59.251 47.826 24.63 0.00 45.62 4.46
657 658 3.931907 ATATAGCTTGCTGTTGTCCCA 57.068 42.857 5.26 0.00 0.00 4.37
658 659 2.584835 ATAGCTTGCTGTTGTCCCAA 57.415 45.000 5.26 0.00 0.00 4.12
659 660 2.584835 TAGCTTGCTGTTGTCCCAAT 57.415 45.000 5.26 0.00 0.00 3.16
660 661 0.963962 AGCTTGCTGTTGTCCCAATG 59.036 50.000 0.00 0.00 0.00 2.82
661 662 0.961019 GCTTGCTGTTGTCCCAATGA 59.039 50.000 0.00 0.00 0.00 2.57
662 663 1.068055 GCTTGCTGTTGTCCCAATGAG 60.068 52.381 0.00 0.00 0.00 2.90
663 664 1.542915 CTTGCTGTTGTCCCAATGAGG 59.457 52.381 0.00 0.00 37.03 3.86
664 665 0.895100 TGCTGTTGTCCCAATGAGGC 60.895 55.000 0.00 0.00 35.39 4.70
665 666 0.895100 GCTGTTGTCCCAATGAGGCA 60.895 55.000 0.00 0.00 35.39 4.75
666 667 1.619654 CTGTTGTCCCAATGAGGCAA 58.380 50.000 0.00 0.00 35.39 4.52
667 668 1.270550 CTGTTGTCCCAATGAGGCAAC 59.729 52.381 5.26 5.26 40.91 4.17
668 669 0.603065 GTTGTCCCAATGAGGCAACC 59.397 55.000 0.51 0.00 37.67 3.77
669 670 0.482446 TTGTCCCAATGAGGCAACCT 59.518 50.000 0.00 0.00 36.03 3.50
670 671 0.482446 TGTCCCAATGAGGCAACCTT 59.518 50.000 0.00 0.00 31.76 3.50
671 672 1.177401 GTCCCAATGAGGCAACCTTC 58.823 55.000 0.00 0.00 31.76 3.46
672 673 0.776810 TCCCAATGAGGCAACCTTCA 59.223 50.000 0.00 0.00 31.76 3.02
673 674 0.890683 CCCAATGAGGCAACCTTCAC 59.109 55.000 0.00 0.00 31.76 3.18
674 675 1.548582 CCCAATGAGGCAACCTTCACT 60.549 52.381 0.00 0.00 31.76 3.41
675 676 2.242043 CCAATGAGGCAACCTTCACTT 58.758 47.619 0.00 0.00 31.76 3.16
676 677 2.229784 CCAATGAGGCAACCTTCACTTC 59.770 50.000 0.00 0.00 31.76 3.01
677 678 2.206576 ATGAGGCAACCTTCACTTCC 57.793 50.000 0.00 0.00 31.76 3.46
678 679 0.250295 TGAGGCAACCTTCACTTCCG 60.250 55.000 0.00 0.00 31.76 4.30
679 680 0.250338 GAGGCAACCTTCACTTCCGT 60.250 55.000 0.00 0.00 31.76 4.69
712 715 0.984995 ACTTCTCTTGGGTAGGCCAC 59.015 55.000 5.01 0.31 36.17 5.01
731 734 0.721718 CGATCCAAGGTCGCTTTCAC 59.278 55.000 0.00 0.00 31.85 3.18
734 737 1.593196 TCCAAGGTCGCTTTCACAAG 58.407 50.000 0.00 0.00 0.00 3.16
805 811 6.874288 ATGGCATTAGTGAAATAAGCTCTC 57.126 37.500 0.00 0.00 0.00 3.20
825 832 7.282675 AGCTCTCAAATATTTGGACATTCTCTG 59.717 37.037 24.40 9.72 38.66 3.35
827 834 7.114754 TCTCAAATATTTGGACATTCTCTGCT 58.885 34.615 24.40 0.00 38.66 4.24
832 839 8.985315 AATATTTGGACATTCTCTGCTATCAA 57.015 30.769 0.00 0.00 0.00 2.57
892 899 1.283613 CCCCCACTTACATAGCCACAA 59.716 52.381 0.00 0.00 0.00 3.33
893 900 2.365582 CCCCACTTACATAGCCACAAC 58.634 52.381 0.00 0.00 0.00 3.32
895 902 2.365582 CCACTTACATAGCCACAACCC 58.634 52.381 0.00 0.00 0.00 4.11
896 903 2.290641 CCACTTACATAGCCACAACCCA 60.291 50.000 0.00 0.00 0.00 4.51
897 904 2.747446 CACTTACATAGCCACAACCCAC 59.253 50.000 0.00 0.00 0.00 4.61
898 905 2.373836 ACTTACATAGCCACAACCCACA 59.626 45.455 0.00 0.00 0.00 4.17
899 906 3.181438 ACTTACATAGCCACAACCCACAA 60.181 43.478 0.00 0.00 0.00 3.33
900 907 1.616159 ACATAGCCACAACCCACAAC 58.384 50.000 0.00 0.00 0.00 3.32
901 908 0.887933 CATAGCCACAACCCACAACC 59.112 55.000 0.00 0.00 0.00 3.77
931 944 3.166657 GCACTTGCGAATTGTGATCTTC 58.833 45.455 1.69 0.00 33.95 2.87
1053 1071 2.200067 GAGATCAAGGTGATGAGCGTG 58.800 52.381 0.00 0.00 40.55 5.34
1594 1662 7.065923 GGGTAGATTTTCTGCTAGTAGTTTTGG 59.934 40.741 7.77 0.00 29.49 3.28
1624 1701 5.181433 GGGTTATCTTCAGGTTGTCTTGTTC 59.819 44.000 0.00 0.00 0.00 3.18
1637 1714 1.280710 TCTTGTTCGGTGGGTGCATAT 59.719 47.619 0.00 0.00 0.00 1.78
1724 1802 7.881775 TGATGGCATATACTGATATACTCGT 57.118 36.000 0.00 0.00 0.00 4.18
1725 1803 8.293699 TGATGGCATATACTGATATACTCGTT 57.706 34.615 0.00 0.00 0.00 3.85
1726 1804 8.190784 TGATGGCATATACTGATATACTCGTTG 58.809 37.037 0.00 0.00 0.00 4.10
1727 1805 6.330278 TGGCATATACTGATATACTCGTTGC 58.670 40.000 0.00 0.00 0.00 4.17
1728 1806 6.152831 TGGCATATACTGATATACTCGTTGCT 59.847 38.462 0.00 0.00 0.00 3.91
1729 1807 6.473778 GGCATATACTGATATACTCGTTGCTG 59.526 42.308 0.00 0.00 0.00 4.41
1743 1821 4.730657 TCGTTGCTGTACTAAGCTTACTC 58.269 43.478 0.86 0.00 43.90 2.59
1746 1824 5.634020 CGTTGCTGTACTAAGCTTACTCTTT 59.366 40.000 0.86 0.00 43.90 2.52
1772 1850 9.467258 TTTTTCTTCATTATTTCACAAGCTCTG 57.533 29.630 0.00 0.00 0.00 3.35
1775 1853 8.037382 TCTTCATTATTTCACAAGCTCTGAAG 57.963 34.615 6.83 0.00 38.78 3.02
1788 1866 3.508012 AGCTCTGAAGTACACCACAGTAG 59.492 47.826 0.00 0.00 0.00 2.57
1792 1870 2.287970 TGAAGTACACCACAGTAGCACG 60.288 50.000 0.00 0.00 0.00 5.34
1804 1882 2.864343 CAGTAGCACGCCAGGTATTAAC 59.136 50.000 0.00 0.00 0.00 2.01
1832 1910 2.817396 GACTCCGCTGCTCAAGGC 60.817 66.667 0.00 0.00 42.22 4.35
1855 1938 5.541845 CACTATGATTTCGGCTCTGGAATA 58.458 41.667 0.00 0.00 0.00 1.75
1856 1939 5.636965 CACTATGATTTCGGCTCTGGAATAG 59.363 44.000 0.00 0.00 0.00 1.73
1857 1940 3.475566 TGATTTCGGCTCTGGAATAGG 57.524 47.619 0.00 0.00 0.00 2.57
1858 1941 3.038280 TGATTTCGGCTCTGGAATAGGA 58.962 45.455 0.00 0.00 0.00 2.94
1859 1942 3.070159 TGATTTCGGCTCTGGAATAGGAG 59.930 47.826 0.00 0.00 0.00 3.69
1860 1943 2.160721 TTCGGCTCTGGAATAGGAGT 57.839 50.000 0.00 0.00 32.67 3.85
1861 1944 3.308035 TTCGGCTCTGGAATAGGAGTA 57.692 47.619 0.00 0.00 32.67 2.59
1862 1945 2.584236 TCGGCTCTGGAATAGGAGTAC 58.416 52.381 0.00 0.00 32.67 2.73
1863 1946 1.614413 CGGCTCTGGAATAGGAGTACC 59.386 57.143 0.00 0.00 32.67 3.34
1865 1948 3.310193 GGCTCTGGAATAGGAGTACCTT 58.690 50.000 0.00 0.00 45.36 3.50
1866 1949 3.322541 GGCTCTGGAATAGGAGTACCTTC 59.677 52.174 0.00 0.00 45.36 3.46
1867 1950 4.219919 GCTCTGGAATAGGAGTACCTTCT 58.780 47.826 0.00 0.00 45.36 2.85
1868 1951 5.386924 GCTCTGGAATAGGAGTACCTTCTA 58.613 45.833 0.00 0.00 45.36 2.10
1909 1992 2.125773 AGCCTGGCTTCAAAGATGAG 57.874 50.000 17.22 0.00 33.89 2.90
1936 2019 0.251354 TCTGCAAGACATCTCTGCCC 59.749 55.000 11.17 0.00 38.67 5.36
1951 2034 1.001378 CTGCCCGCCATAATTAAGCAC 60.001 52.381 10.44 1.87 0.00 4.40
2001 2084 3.118738 ACCTACTTGAAGGAAATCGCGAT 60.119 43.478 17.62 17.62 39.15 4.58
2002 2085 4.098960 ACCTACTTGAAGGAAATCGCGATA 59.901 41.667 24.00 0.87 39.15 2.92
2003 2086 5.047847 CCTACTTGAAGGAAATCGCGATAA 58.952 41.667 24.00 10.01 39.15 1.75
2005 2088 3.621715 ACTTGAAGGAAATCGCGATAACC 59.378 43.478 24.00 25.55 0.00 2.85
2006 2089 2.198406 TGAAGGAAATCGCGATAACCG 58.802 47.619 24.00 0.00 42.21 4.44
2008 2091 2.814280 AGGAAATCGCGATAACCGAT 57.186 45.000 24.00 10.68 46.35 4.18
2044 2180 3.922171 ATGTGATCTTCTTGGAGGACC 57.078 47.619 0.00 0.00 0.00 4.46
2078 2214 2.019249 CAATCGCTCCCACAACATCAT 58.981 47.619 0.00 0.00 0.00 2.45
2155 2294 2.028130 AGCCGGTTATCAGACAGAGAG 58.972 52.381 1.90 0.00 0.00 3.20
2168 2307 1.271434 ACAGAGAGTAGTGGCAGTCGA 60.271 52.381 0.00 0.00 0.00 4.20
2180 2319 1.218316 CAGTCGACCAAGTAGCCCC 59.782 63.158 13.01 0.00 0.00 5.80
2251 2391 8.646004 TCATGTCAACAAAATTAATTTCCCTCA 58.354 29.630 13.68 9.10 0.00 3.86
2261 2401 7.939784 AATTAATTTCCCTCAGTGAACTACC 57.060 36.000 0.00 0.00 0.00 3.18
2266 2406 5.677319 TTCCCTCAGTGAACTACCATTAG 57.323 43.478 0.00 0.00 0.00 1.73
2267 2407 3.451178 TCCCTCAGTGAACTACCATTAGC 59.549 47.826 0.00 0.00 0.00 3.09
2268 2408 3.197766 CCCTCAGTGAACTACCATTAGCA 59.802 47.826 0.00 0.00 0.00 3.49
2269 2409 4.141620 CCCTCAGTGAACTACCATTAGCAT 60.142 45.833 0.00 0.00 0.00 3.79
2275 2415 5.104941 AGTGAACTACCATTAGCATGCACTA 60.105 40.000 21.98 4.54 30.26 2.74
2346 2487 1.609072 GGCCACCTCTTTTGTTGTCTC 59.391 52.381 0.00 0.00 0.00 3.36
2347 2488 1.264288 GCCACCTCTTTTGTTGTCTCG 59.736 52.381 0.00 0.00 0.00 4.04
2350 2491 3.194861 CACCTCTTTTGTTGTCTCGACA 58.805 45.455 0.00 0.00 39.98 4.35
2357 2498 5.875910 TCTTTTGTTGTCTCGACAGGTTTTA 59.124 36.000 0.00 0.00 42.94 1.52
2368 2509 5.369833 TCGACAGGTTTTAGTGGATTCAAA 58.630 37.500 0.00 0.00 0.00 2.69
2400 2544 0.603707 ATGGACTCAACACACAGGCG 60.604 55.000 0.00 0.00 0.00 5.52
2441 2600 1.955778 CAGTTGTGATCCAGGCAACAA 59.044 47.619 16.33 6.25 43.31 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.160137 GCTCATTCTCGCACCAAGTT 58.840 50.000 0.00 0.00 0.00 2.66
1 2 0.035317 TGCTCATTCTCGCACCAAGT 59.965 50.000 0.00 0.00 0.00 3.16
2 3 0.725686 CTGCTCATTCTCGCACCAAG 59.274 55.000 0.00 0.00 31.95 3.61
3 4 0.035317 ACTGCTCATTCTCGCACCAA 59.965 50.000 0.00 0.00 31.95 3.67
4 5 0.671472 CACTGCTCATTCTCGCACCA 60.671 55.000 0.00 0.00 31.95 4.17
5 6 1.364626 CCACTGCTCATTCTCGCACC 61.365 60.000 0.00 0.00 31.95 5.01
6 7 1.975363 GCCACTGCTCATTCTCGCAC 61.975 60.000 0.00 0.00 31.95 5.34
7 8 1.742880 GCCACTGCTCATTCTCGCA 60.743 57.895 0.00 0.00 34.54 5.10
8 9 1.703438 CTGCCACTGCTCATTCTCGC 61.703 60.000 0.00 0.00 38.71 5.03
9 10 0.108472 TCTGCCACTGCTCATTCTCG 60.108 55.000 0.00 0.00 38.71 4.04
10 11 1.654317 CTCTGCCACTGCTCATTCTC 58.346 55.000 0.00 0.00 38.71 2.87
11 12 0.392729 GCTCTGCCACTGCTCATTCT 60.393 55.000 0.00 0.00 38.71 2.40
12 13 0.675837 TGCTCTGCCACTGCTCATTC 60.676 55.000 0.00 0.00 38.71 2.67
13 14 0.677098 CTGCTCTGCCACTGCTCATT 60.677 55.000 0.00 0.00 38.71 2.57
14 15 1.078356 CTGCTCTGCCACTGCTCAT 60.078 57.895 0.00 0.00 38.71 2.90
15 16 2.346365 CTGCTCTGCCACTGCTCA 59.654 61.111 0.00 0.00 38.71 4.26
16 17 2.436292 CCTGCTCTGCCACTGCTC 60.436 66.667 0.00 0.00 38.71 4.26
17 18 2.744768 GAACCTGCTCTGCCACTGCT 62.745 60.000 0.00 0.00 38.71 4.24
18 19 2.282040 AACCTGCTCTGCCACTGC 60.282 61.111 0.00 0.00 38.26 4.40
19 20 0.954449 CAGAACCTGCTCTGCCACTG 60.954 60.000 0.00 0.00 36.67 3.66
20 21 1.374190 CAGAACCTGCTCTGCCACT 59.626 57.895 0.00 0.00 36.67 4.00
21 22 3.978272 CAGAACCTGCTCTGCCAC 58.022 61.111 0.00 0.00 36.67 5.01
30 31 2.277969 CTAGAGTGCATGCAGAACCTG 58.722 52.381 23.41 6.38 34.12 4.00
31 32 1.905215 ACTAGAGTGCATGCAGAACCT 59.095 47.619 23.41 14.93 0.00 3.50
32 33 2.393271 ACTAGAGTGCATGCAGAACC 57.607 50.000 23.41 9.52 0.00 3.62
33 34 2.675348 GGAACTAGAGTGCATGCAGAAC 59.325 50.000 23.41 15.08 0.00 3.01
34 35 2.568956 AGGAACTAGAGTGCATGCAGAA 59.431 45.455 23.41 5.82 36.02 3.02
35 36 2.093816 CAGGAACTAGAGTGCATGCAGA 60.094 50.000 23.41 5.98 36.02 4.26
36 37 2.277969 CAGGAACTAGAGTGCATGCAG 58.722 52.381 23.41 11.76 36.02 4.41
37 38 1.065926 CCAGGAACTAGAGTGCATGCA 60.066 52.381 18.46 18.46 34.20 3.96
38 39 1.065854 ACCAGGAACTAGAGTGCATGC 60.066 52.381 11.82 11.82 34.20 4.06
39 40 2.234661 TGACCAGGAACTAGAGTGCATG 59.765 50.000 0.00 0.00 36.02 4.06
40 41 2.234908 GTGACCAGGAACTAGAGTGCAT 59.765 50.000 0.00 0.00 36.02 3.96
41 42 1.618837 GTGACCAGGAACTAGAGTGCA 59.381 52.381 0.00 0.00 36.02 4.57
42 43 1.618837 TGTGACCAGGAACTAGAGTGC 59.381 52.381 0.00 0.00 36.02 4.40
43 44 3.157881 TCTGTGACCAGGAACTAGAGTG 58.842 50.000 0.00 0.00 39.31 3.51
44 45 3.074687 TCTCTGTGACCAGGAACTAGAGT 59.925 47.826 0.00 0.00 39.31 3.24
45 46 3.691575 TCTCTGTGACCAGGAACTAGAG 58.308 50.000 0.00 6.78 39.31 2.43
46 47 3.808834 TCTCTGTGACCAGGAACTAGA 57.191 47.619 0.00 0.00 39.31 2.43
47 48 4.039245 TGTTTCTCTGTGACCAGGAACTAG 59.961 45.833 0.00 0.00 39.31 2.57
48 49 3.964688 TGTTTCTCTGTGACCAGGAACTA 59.035 43.478 0.00 0.00 39.31 2.24
49 50 2.771943 TGTTTCTCTGTGACCAGGAACT 59.228 45.455 0.00 0.00 39.31 3.01
50 51 2.872858 GTGTTTCTCTGTGACCAGGAAC 59.127 50.000 0.00 0.00 39.31 3.62
51 52 2.503765 TGTGTTTCTCTGTGACCAGGAA 59.496 45.455 0.00 0.00 39.31 3.36
52 53 2.115427 TGTGTTTCTCTGTGACCAGGA 58.885 47.619 0.00 0.00 39.31 3.86
53 54 2.620251 TGTGTTTCTCTGTGACCAGG 57.380 50.000 0.00 0.00 39.31 4.45
54 55 3.797039 TCTTGTGTTTCTCTGTGACCAG 58.203 45.455 0.00 0.00 40.25 4.00
55 56 3.450817 TCTCTTGTGTTTCTCTGTGACCA 59.549 43.478 0.00 0.00 0.00 4.02
56 57 3.804873 GTCTCTTGTGTTTCTCTGTGACC 59.195 47.826 0.00 0.00 0.00 4.02
57 58 3.804873 GGTCTCTTGTGTTTCTCTGTGAC 59.195 47.826 0.00 0.00 0.00 3.67
58 59 3.706594 AGGTCTCTTGTGTTTCTCTGTGA 59.293 43.478 0.00 0.00 0.00 3.58
59 60 4.054671 GAGGTCTCTTGTGTTTCTCTGTG 58.945 47.826 0.00 0.00 0.00 3.66
60 61 3.706594 TGAGGTCTCTTGTGTTTCTCTGT 59.293 43.478 0.00 0.00 0.00 3.41
61 62 4.327982 TGAGGTCTCTTGTGTTTCTCTG 57.672 45.455 0.00 0.00 0.00 3.35
62 63 4.262808 CCATGAGGTCTCTTGTGTTTCTCT 60.263 45.833 11.30 0.00 34.18 3.10
63 64 3.999663 CCATGAGGTCTCTTGTGTTTCTC 59.000 47.826 11.30 0.00 34.18 2.87
64 65 3.244700 CCCATGAGGTCTCTTGTGTTTCT 60.245 47.826 11.30 0.00 34.18 2.52
65 66 3.077359 CCCATGAGGTCTCTTGTGTTTC 58.923 50.000 11.30 0.00 34.18 2.78
66 67 2.224867 CCCCATGAGGTCTCTTGTGTTT 60.225 50.000 11.30 0.00 34.18 2.83
67 68 1.352352 CCCCATGAGGTCTCTTGTGTT 59.648 52.381 11.30 0.00 34.18 3.32
68 69 0.987294 CCCCATGAGGTCTCTTGTGT 59.013 55.000 11.30 0.00 34.18 3.72
69 70 1.279496 TCCCCATGAGGTCTCTTGTG 58.721 55.000 11.30 2.47 34.18 3.33
70 71 2.044793 TTCCCCATGAGGTCTCTTGT 57.955 50.000 11.30 0.00 34.18 3.16
71 72 2.943199 GCTTTCCCCATGAGGTCTCTTG 60.943 54.545 0.00 6.83 35.33 3.02
72 73 1.283321 GCTTTCCCCATGAGGTCTCTT 59.717 52.381 0.00 0.00 0.00 2.85
73 74 0.915364 GCTTTCCCCATGAGGTCTCT 59.085 55.000 0.00 0.00 0.00 3.10
74 75 0.106967 GGCTTTCCCCATGAGGTCTC 60.107 60.000 0.00 0.00 0.00 3.36
75 76 1.915078 CGGCTTTCCCCATGAGGTCT 61.915 60.000 0.00 0.00 0.00 3.85
76 77 1.452108 CGGCTTTCCCCATGAGGTC 60.452 63.158 0.00 0.00 0.00 3.85
77 78 2.677228 CGGCTTTCCCCATGAGGT 59.323 61.111 0.00 0.00 0.00 3.85
78 79 2.830370 GCGGCTTTCCCCATGAGG 60.830 66.667 0.00 0.00 0.00 3.86
79 80 1.039233 ATTGCGGCTTTCCCCATGAG 61.039 55.000 0.00 0.00 0.00 2.90
80 81 0.257328 TATTGCGGCTTTCCCCATGA 59.743 50.000 0.00 0.00 0.00 3.07
81 82 0.670162 CTATTGCGGCTTTCCCCATG 59.330 55.000 0.00 0.00 0.00 3.66
82 83 0.468029 CCTATTGCGGCTTTCCCCAT 60.468 55.000 0.00 0.00 0.00 4.00
83 84 1.077068 CCTATTGCGGCTTTCCCCA 60.077 57.895 0.00 0.00 0.00 4.96
84 85 2.490148 GCCTATTGCGGCTTTCCCC 61.490 63.158 0.00 0.00 46.63 4.81
85 86 3.120105 GCCTATTGCGGCTTTCCC 58.880 61.111 0.00 0.00 46.63 3.97
93 94 0.447801 GTGTTGGACTGCCTATTGCG 59.552 55.000 0.00 0.00 45.60 4.85
94 95 0.811281 GGTGTTGGACTGCCTATTGC 59.189 55.000 0.00 0.00 41.77 3.56
95 96 1.086696 CGGTGTTGGACTGCCTATTG 58.913 55.000 0.00 0.00 34.31 1.90
96 97 0.035439 CCGGTGTTGGACTGCCTATT 60.035 55.000 0.00 0.00 34.31 1.73
97 98 1.198759 ACCGGTGTTGGACTGCCTAT 61.199 55.000 6.12 0.00 34.31 2.57
98 99 1.412453 AACCGGTGTTGGACTGCCTA 61.412 55.000 8.52 0.00 32.13 3.93
99 100 2.279037 AAACCGGTGTTGGACTGCCT 62.279 55.000 8.52 0.00 34.13 4.75
100 101 1.826487 AAACCGGTGTTGGACTGCC 60.826 57.895 8.52 0.00 34.13 4.85
101 102 1.358759 CAAACCGGTGTTGGACTGC 59.641 57.895 8.52 0.00 34.13 4.40
102 103 2.029743 CCAAACCGGTGTTGGACTG 58.970 57.895 29.64 12.22 34.13 3.51
103 104 1.826487 GCCAAACCGGTGTTGGACT 60.826 57.895 33.97 9.40 36.97 3.85
104 105 1.460273 ATGCCAAACCGGTGTTGGAC 61.460 55.000 33.97 27.25 36.97 4.02
105 106 0.757188 AATGCCAAACCGGTGTTGGA 60.757 50.000 33.97 24.36 36.97 3.53
106 107 0.319469 GAATGCCAAACCGGTGTTGG 60.319 55.000 29.34 29.34 36.97 3.77
107 108 0.319469 GGAATGCCAAACCGGTGTTG 60.319 55.000 8.52 14.70 36.97 3.33
108 109 0.757188 TGGAATGCCAAACCGGTGTT 60.757 50.000 8.52 1.40 42.49 3.32
109 110 1.152652 TGGAATGCCAAACCGGTGT 60.153 52.632 8.52 0.00 42.49 4.16
110 111 3.770589 TGGAATGCCAAACCGGTG 58.229 55.556 8.52 0.00 42.49 4.94
118 119 3.576078 AAGATCGGTATTGGAATGCCA 57.424 42.857 7.20 0.00 40.73 4.92
119 120 4.499696 CCAAAAGATCGGTATTGGAATGCC 60.500 45.833 13.33 0.00 44.01 4.40
120 121 4.097892 ACCAAAAGATCGGTATTGGAATGC 59.902 41.667 21.02 0.00 44.01 3.56
121 122 5.356751 TGACCAAAAGATCGGTATTGGAATG 59.643 40.000 21.02 0.00 44.01 2.67
122 123 5.357032 GTGACCAAAAGATCGGTATTGGAAT 59.643 40.000 21.02 6.72 44.01 3.01
123 124 4.698304 GTGACCAAAAGATCGGTATTGGAA 59.302 41.667 21.02 10.85 44.01 3.53
124 125 4.258543 GTGACCAAAAGATCGGTATTGGA 58.741 43.478 21.02 4.80 44.01 3.53
125 126 4.006989 TGTGACCAAAAGATCGGTATTGG 58.993 43.478 15.68 15.68 46.14 3.16
126 127 5.353956 TGATGTGACCAAAAGATCGGTATTG 59.646 40.000 0.00 0.00 34.99 1.90
127 128 5.496556 TGATGTGACCAAAAGATCGGTATT 58.503 37.500 0.00 0.00 34.99 1.89
128 129 5.097742 TGATGTGACCAAAAGATCGGTAT 57.902 39.130 0.00 0.00 34.99 2.73
129 130 4.545208 TGATGTGACCAAAAGATCGGTA 57.455 40.909 0.00 0.00 34.99 4.02
130 131 3.417069 TGATGTGACCAAAAGATCGGT 57.583 42.857 0.00 0.00 38.56 4.69
131 132 4.156556 ACATTGATGTGACCAAAAGATCGG 59.843 41.667 0.00 0.00 40.03 4.18
132 133 5.122869 AGACATTGATGTGACCAAAAGATCG 59.877 40.000 0.57 0.00 41.95 3.69
133 134 6.506500 AGACATTGATGTGACCAAAAGATC 57.493 37.500 0.57 0.00 41.95 2.75
134 135 6.906157 AAGACATTGATGTGACCAAAAGAT 57.094 33.333 0.57 0.00 41.95 2.40
135 136 6.713762 AAAGACATTGATGTGACCAAAAGA 57.286 33.333 0.57 0.00 41.95 2.52
136 137 7.651808 ACTAAAGACATTGATGTGACCAAAAG 58.348 34.615 0.57 0.00 41.95 2.27
137 138 7.581213 ACTAAAGACATTGATGTGACCAAAA 57.419 32.000 0.57 0.00 41.95 2.44
138 139 7.255451 GGAACTAAAGACATTGATGTGACCAAA 60.255 37.037 0.57 0.00 41.95 3.28
139 140 6.206634 GGAACTAAAGACATTGATGTGACCAA 59.793 38.462 0.57 0.00 41.95 3.67
140 141 5.705441 GGAACTAAAGACATTGATGTGACCA 59.295 40.000 0.57 0.00 41.95 4.02
141 142 5.940470 AGGAACTAAAGACATTGATGTGACC 59.060 40.000 0.57 0.00 38.00 4.02
142 143 7.389053 AGAAGGAACTAAAGACATTGATGTGAC 59.611 37.037 0.57 0.00 38.72 3.67
143 144 7.453393 AGAAGGAACTAAAGACATTGATGTGA 58.547 34.615 0.57 0.00 38.72 3.58
144 145 7.678947 AGAAGGAACTAAAGACATTGATGTG 57.321 36.000 0.57 0.00 38.72 3.21
145 146 8.697507 AAAGAAGGAACTAAAGACATTGATGT 57.302 30.769 0.00 0.00 41.03 3.06
146 147 9.007901 AGAAAGAAGGAACTAAAGACATTGATG 57.992 33.333 0.00 0.00 38.49 3.07
147 148 9.579932 AAGAAAGAAGGAACTAAAGACATTGAT 57.420 29.630 0.00 0.00 38.49 2.57
148 149 8.980481 AAGAAAGAAGGAACTAAAGACATTGA 57.020 30.769 0.00 0.00 38.49 2.57
160 161 9.803315 ACAAAACATTCTAAAGAAAGAAGGAAC 57.197 29.630 5.39 0.00 39.11 3.62
234 235 6.455690 AAGGACTGGAGGAAGTATCTTTTT 57.544 37.500 0.00 0.00 0.00 1.94
235 236 6.455690 AAAGGACTGGAGGAAGTATCTTTT 57.544 37.500 0.00 0.00 33.57 2.27
236 237 6.455690 AAAAGGACTGGAGGAAGTATCTTT 57.544 37.500 0.00 0.00 36.31 2.52
237 238 6.455690 AAAAAGGACTGGAGGAAGTATCTT 57.544 37.500 0.00 0.00 0.00 2.40
238 239 6.731448 AGTAAAAAGGACTGGAGGAAGTATCT 59.269 38.462 0.00 0.00 0.00 1.98
239 240 6.948589 AGTAAAAAGGACTGGAGGAAGTATC 58.051 40.000 0.00 0.00 0.00 2.24
240 241 6.731448 AGAGTAAAAAGGACTGGAGGAAGTAT 59.269 38.462 0.00 0.00 0.00 2.12
241 242 6.014499 CAGAGTAAAAAGGACTGGAGGAAGTA 60.014 42.308 0.00 0.00 0.00 2.24
242 243 4.908481 AGAGTAAAAAGGACTGGAGGAAGT 59.092 41.667 0.00 0.00 0.00 3.01
243 244 5.241662 CAGAGTAAAAAGGACTGGAGGAAG 58.758 45.833 0.00 0.00 0.00 3.46
244 245 4.505039 GCAGAGTAAAAAGGACTGGAGGAA 60.505 45.833 0.00 0.00 0.00 3.36
245 246 3.008049 GCAGAGTAAAAAGGACTGGAGGA 59.992 47.826 0.00 0.00 0.00 3.71
246 247 3.244561 TGCAGAGTAAAAAGGACTGGAGG 60.245 47.826 0.00 0.00 0.00 4.30
247 248 4.008074 TGCAGAGTAAAAAGGACTGGAG 57.992 45.455 0.00 0.00 0.00 3.86
248 249 4.640771 ATGCAGAGTAAAAAGGACTGGA 57.359 40.909 0.00 0.00 33.99 3.86
249 250 7.987458 TCTAATATGCAGAGTAAAAAGGACTGG 59.013 37.037 0.00 0.00 0.00 4.00
250 251 8.948631 TCTAATATGCAGAGTAAAAAGGACTG 57.051 34.615 0.00 0.00 0.00 3.51
254 255 9.956720 CCAAATCTAATATGCAGAGTAAAAAGG 57.043 33.333 0.00 0.00 0.00 3.11
255 256 9.956720 CCCAAATCTAATATGCAGAGTAAAAAG 57.043 33.333 0.00 0.00 0.00 2.27
256 257 9.474313 ACCCAAATCTAATATGCAGAGTAAAAA 57.526 29.630 0.00 0.00 0.00 1.94
257 258 9.120538 GACCCAAATCTAATATGCAGAGTAAAA 57.879 33.333 0.00 0.00 0.00 1.52
258 259 8.271458 TGACCCAAATCTAATATGCAGAGTAAA 58.729 33.333 0.00 0.00 0.00 2.01
259 260 7.801104 TGACCCAAATCTAATATGCAGAGTAA 58.199 34.615 0.00 0.00 0.00 2.24
260 261 7.373617 TGACCCAAATCTAATATGCAGAGTA 57.626 36.000 0.00 0.00 0.00 2.59
261 262 6.252599 TGACCCAAATCTAATATGCAGAGT 57.747 37.500 0.00 0.00 0.00 3.24
262 263 6.769822 ACTTGACCCAAATCTAATATGCAGAG 59.230 38.462 0.00 0.00 0.00 3.35
263 264 6.662755 ACTTGACCCAAATCTAATATGCAGA 58.337 36.000 0.00 0.00 0.00 4.26
264 265 6.543465 TGACTTGACCCAAATCTAATATGCAG 59.457 38.462 0.00 0.00 0.00 4.41
265 266 6.422333 TGACTTGACCCAAATCTAATATGCA 58.578 36.000 0.00 0.00 0.00 3.96
266 267 6.942532 TGACTTGACCCAAATCTAATATGC 57.057 37.500 0.00 0.00 0.00 3.14
267 268 8.960591 AGTTTGACTTGACCCAAATCTAATATG 58.039 33.333 0.00 0.00 35.14 1.78
268 269 9.533831 AAGTTTGACTTGACCCAAATCTAATAT 57.466 29.630 0.00 0.00 37.00 1.28
269 270 8.934023 AAGTTTGACTTGACCCAAATCTAATA 57.066 30.769 0.00 0.00 37.00 0.98
270 271 7.839680 AAGTTTGACTTGACCCAAATCTAAT 57.160 32.000 0.00 0.00 37.00 1.73
271 272 7.654022 AAAGTTTGACTTGACCCAAATCTAA 57.346 32.000 0.00 0.00 38.66 2.10
272 273 7.776030 TGTAAAGTTTGACTTGACCCAAATCTA 59.224 33.333 5.99 0.00 38.54 1.98
273 274 6.605594 TGTAAAGTTTGACTTGACCCAAATCT 59.394 34.615 5.99 0.00 38.54 2.40
274 275 6.801575 TGTAAAGTTTGACTTGACCCAAATC 58.198 36.000 5.99 0.00 38.54 2.17
275 276 6.783708 TGTAAAGTTTGACTTGACCCAAAT 57.216 33.333 5.99 0.00 38.54 2.32
276 277 6.591750 TTGTAAAGTTTGACTTGACCCAAA 57.408 33.333 5.99 0.00 38.54 3.28
277 278 6.209788 ACTTTGTAAAGTTTGACTTGACCCAA 59.790 34.615 4.25 0.03 46.52 4.12
278 279 5.712917 ACTTTGTAAAGTTTGACTTGACCCA 59.287 36.000 4.25 0.00 46.52 4.51
279 280 6.203808 ACTTTGTAAAGTTTGACTTGACCC 57.796 37.500 4.25 0.00 46.52 4.46
351 352 9.847224 ATTACGAAATGTAGTTTCTTGGGATAT 57.153 29.630 0.00 0.00 43.26 1.63
352 353 9.104965 CATTACGAAATGTAGTTTCTTGGGATA 57.895 33.333 0.00 0.00 43.26 2.59
353 354 7.827236 TCATTACGAAATGTAGTTTCTTGGGAT 59.173 33.333 0.00 0.00 43.26 3.85
354 355 7.162761 TCATTACGAAATGTAGTTTCTTGGGA 58.837 34.615 0.00 0.00 43.26 4.37
355 356 7.372451 TCATTACGAAATGTAGTTTCTTGGG 57.628 36.000 0.00 0.00 43.26 4.12
356 357 9.490663 GATTCATTACGAAATGTAGTTTCTTGG 57.509 33.333 0.00 0.00 43.26 3.61
375 376 9.995003 TGCCAAGTAAATTTTGTTAGATTCATT 57.005 25.926 0.00 0.00 0.00 2.57
377 378 9.995003 AATGCCAAGTAAATTTTGTTAGATTCA 57.005 25.926 0.00 0.00 0.00 2.57
379 380 9.777297 ACAATGCCAAGTAAATTTTGTTAGATT 57.223 25.926 0.00 0.00 0.00 2.40
385 386 9.336171 ACATTTACAATGCCAAGTAAATTTTGT 57.664 25.926 12.98 9.11 44.26 2.83
423 424 9.967346 CATCTCTACTTTGACCGAATTTATAGA 57.033 33.333 0.00 0.00 0.00 1.98
424 425 8.704234 GCATCTCTACTTTGACCGAATTTATAG 58.296 37.037 0.00 0.00 0.00 1.31
425 426 8.421784 AGCATCTCTACTTTGACCGAATTTATA 58.578 33.333 0.00 0.00 0.00 0.98
426 427 7.275920 AGCATCTCTACTTTGACCGAATTTAT 58.724 34.615 0.00 0.00 0.00 1.40
427 428 6.640518 AGCATCTCTACTTTGACCGAATTTA 58.359 36.000 0.00 0.00 0.00 1.40
428 429 5.491982 AGCATCTCTACTTTGACCGAATTT 58.508 37.500 0.00 0.00 0.00 1.82
429 430 5.091261 AGCATCTCTACTTTGACCGAATT 57.909 39.130 0.00 0.00 0.00 2.17
430 431 4.744795 AGCATCTCTACTTTGACCGAAT 57.255 40.909 0.00 0.00 0.00 3.34
431 432 4.537135 AAGCATCTCTACTTTGACCGAA 57.463 40.909 0.00 0.00 0.00 4.30
432 433 4.537135 AAAGCATCTCTACTTTGACCGA 57.463 40.909 0.00 0.00 34.88 4.69
438 439 6.648725 GTCTGAAGTCAAAGCATCTCTACTTT 59.351 38.462 0.00 0.00 36.56 2.66
439 440 6.162777 GTCTGAAGTCAAAGCATCTCTACTT 58.837 40.000 0.00 0.00 0.00 2.24
440 441 5.244851 TGTCTGAAGTCAAAGCATCTCTACT 59.755 40.000 0.00 0.00 0.00 2.57
441 442 5.473931 TGTCTGAAGTCAAAGCATCTCTAC 58.526 41.667 0.00 0.00 0.00 2.59
442 443 5.728637 TGTCTGAAGTCAAAGCATCTCTA 57.271 39.130 0.00 0.00 0.00 2.43
443 444 4.613925 TGTCTGAAGTCAAAGCATCTCT 57.386 40.909 0.00 0.00 0.00 3.10
444 445 5.679734 TTTGTCTGAAGTCAAAGCATCTC 57.320 39.130 0.00 0.00 31.49 2.75
445 446 5.591877 AGTTTTGTCTGAAGTCAAAGCATCT 59.408 36.000 15.18 6.52 37.00 2.90
446 447 5.825507 AGTTTTGTCTGAAGTCAAAGCATC 58.174 37.500 15.18 5.02 37.00 3.91
447 448 5.841957 AGTTTTGTCTGAAGTCAAAGCAT 57.158 34.783 15.18 3.15 37.00 3.79
448 449 5.643379 AAGTTTTGTCTGAAGTCAAAGCA 57.357 34.783 15.18 0.00 37.00 3.91
449 450 9.334693 CATATAAGTTTTGTCTGAAGTCAAAGC 57.665 33.333 8.17 8.17 35.29 3.51
450 451 9.334693 GCATATAAGTTTTGTCTGAAGTCAAAG 57.665 33.333 3.59 0.00 35.29 2.77
451 452 8.845227 TGCATATAAGTTTTGTCTGAAGTCAAA 58.155 29.630 0.00 0.00 32.81 2.69
452 453 8.389779 TGCATATAAGTTTTGTCTGAAGTCAA 57.610 30.769 0.00 0.00 0.00 3.18
453 454 7.877612 TCTGCATATAAGTTTTGTCTGAAGTCA 59.122 33.333 0.00 0.00 0.00 3.41
454 455 8.171840 GTCTGCATATAAGTTTTGTCTGAAGTC 58.828 37.037 0.00 0.00 0.00 3.01
455 456 7.880195 AGTCTGCATATAAGTTTTGTCTGAAGT 59.120 33.333 0.00 0.00 0.00 3.01
456 457 8.261492 AGTCTGCATATAAGTTTTGTCTGAAG 57.739 34.615 0.00 0.00 0.00 3.02
457 458 9.719355 TTAGTCTGCATATAAGTTTTGTCTGAA 57.281 29.630 0.00 0.00 0.00 3.02
458 459 9.719355 TTTAGTCTGCATATAAGTTTTGTCTGA 57.281 29.630 0.00 0.00 0.00 3.27
465 466 8.957466 GGTCCTTTTTAGTCTGCATATAAGTTT 58.043 33.333 0.00 0.00 0.00 2.66
466 467 7.280205 CGGTCCTTTTTAGTCTGCATATAAGTT 59.720 37.037 0.00 0.00 0.00 2.66
467 468 6.761714 CGGTCCTTTTTAGTCTGCATATAAGT 59.238 38.462 0.00 0.00 0.00 2.24
468 469 6.202954 CCGGTCCTTTTTAGTCTGCATATAAG 59.797 42.308 0.00 0.00 0.00 1.73
469 470 6.053005 CCGGTCCTTTTTAGTCTGCATATAA 58.947 40.000 0.00 0.00 0.00 0.98
470 471 5.364446 TCCGGTCCTTTTTAGTCTGCATATA 59.636 40.000 0.00 0.00 0.00 0.86
471 472 4.163458 TCCGGTCCTTTTTAGTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
472 473 3.516300 TCCGGTCCTTTTTAGTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
473 474 2.304761 TCCGGTCCTTTTTAGTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
474 475 1.695242 TCCGGTCCTTTTTAGTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
475 476 2.347731 CTCCGGTCCTTTTTAGTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
476 477 2.354805 CCCTCCGGTCCTTTTTAGTCTG 60.355 54.545 0.00 0.00 0.00 3.51
477 478 1.907255 CCCTCCGGTCCTTTTTAGTCT 59.093 52.381 0.00 0.00 0.00 3.24
478 479 1.904537 TCCCTCCGGTCCTTTTTAGTC 59.095 52.381 0.00 0.00 0.00 2.59
479 480 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
480 481 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
481 482 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
482 483 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
483 484 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
484 485 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
485 486 1.064091 GTAGTACTCCCTCCGGTCCTT 60.064 57.143 0.00 0.00 0.00 3.36
486 487 0.550432 GTAGTACTCCCTCCGGTCCT 59.450 60.000 0.00 0.00 0.00 3.85
487 488 0.467106 GGTAGTACTCCCTCCGGTCC 60.467 65.000 0.00 0.00 0.00 4.46
488 489 0.467106 GGGTAGTACTCCCTCCGGTC 60.467 65.000 18.19 0.00 41.58 4.79
489 490 1.617475 GGGTAGTACTCCCTCCGGT 59.383 63.158 18.19 0.00 41.58 5.28
490 491 4.595031 GGGTAGTACTCCCTCCGG 57.405 66.667 18.19 0.00 41.58 5.14
495 496 6.364568 TTTAGAAACAAGGGTAGTACTCCC 57.635 41.667 17.92 17.92 44.90 4.30
516 517 9.410556 GTGTGAACTGCAAAATGTCTTATATTT 57.589 29.630 0.00 0.00 0.00 1.40
517 518 8.575589 TGTGTGAACTGCAAAATGTCTTATATT 58.424 29.630 0.00 0.00 0.00 1.28
518 519 8.109705 TGTGTGAACTGCAAAATGTCTTATAT 57.890 30.769 0.00 0.00 0.00 0.86
519 520 7.503521 TGTGTGAACTGCAAAATGTCTTATA 57.496 32.000 0.00 0.00 0.00 0.98
520 521 6.389830 TGTGTGAACTGCAAAATGTCTTAT 57.610 33.333 0.00 0.00 0.00 1.73
521 522 5.826601 TGTGTGAACTGCAAAATGTCTTA 57.173 34.783 0.00 0.00 0.00 2.10
522 523 4.717233 TGTGTGAACTGCAAAATGTCTT 57.283 36.364 0.00 0.00 0.00 3.01
523 524 4.924305 ATGTGTGAACTGCAAAATGTCT 57.076 36.364 0.00 0.00 0.00 3.41
524 525 6.400303 GCATTATGTGTGAACTGCAAAATGTC 60.400 38.462 0.00 0.00 0.00 3.06
525 526 5.406175 GCATTATGTGTGAACTGCAAAATGT 59.594 36.000 0.00 0.00 0.00 2.71
526 527 5.405873 TGCATTATGTGTGAACTGCAAAATG 59.594 36.000 0.00 0.00 36.75 2.32
527 528 5.539979 TGCATTATGTGTGAACTGCAAAAT 58.460 33.333 0.00 0.00 36.75 1.82
528 529 4.941657 TGCATTATGTGTGAACTGCAAAA 58.058 34.783 0.00 0.00 36.75 2.44
529 530 4.581077 TGCATTATGTGTGAACTGCAAA 57.419 36.364 0.00 0.00 36.75 3.68
530 531 4.581077 TTGCATTATGTGTGAACTGCAA 57.419 36.364 3.84 3.84 44.61 4.08
531 532 4.581077 TTTGCATTATGTGTGAACTGCA 57.419 36.364 0.00 0.00 37.80 4.41
532 533 5.634439 TGAATTTGCATTATGTGTGAACTGC 59.366 36.000 0.00 0.00 0.00 4.40
533 534 7.640616 TTGAATTTGCATTATGTGTGAACTG 57.359 32.000 0.00 0.00 0.00 3.16
534 535 8.659925 TTTTGAATTTGCATTATGTGTGAACT 57.340 26.923 0.00 0.00 0.00 3.01
566 567 5.426504 AGGCAATTGAATTTGTGTGTTCAA 58.573 33.333 10.34 3.39 45.27 2.69
567 568 5.021033 AGGCAATTGAATTTGTGTGTTCA 57.979 34.783 10.34 0.00 32.86 3.18
568 569 7.437862 TCTTTAGGCAATTGAATTTGTGTGTTC 59.562 33.333 10.34 0.00 0.00 3.18
569 570 7.271511 TCTTTAGGCAATTGAATTTGTGTGTT 58.728 30.769 10.34 0.00 0.00 3.32
570 571 6.815089 TCTTTAGGCAATTGAATTTGTGTGT 58.185 32.000 10.34 0.00 0.00 3.72
571 572 6.925165 ACTCTTTAGGCAATTGAATTTGTGTG 59.075 34.615 10.34 0.00 0.00 3.82
572 573 7.054491 ACTCTTTAGGCAATTGAATTTGTGT 57.946 32.000 10.34 0.00 0.00 3.72
573 574 8.514594 TCTACTCTTTAGGCAATTGAATTTGTG 58.485 33.333 10.34 0.00 0.00 3.33
574 575 8.635765 TCTACTCTTTAGGCAATTGAATTTGT 57.364 30.769 10.34 0.00 0.00 2.83
575 576 9.512435 CATCTACTCTTTAGGCAATTGAATTTG 57.488 33.333 10.34 0.00 0.00 2.32
576 577 8.689972 CCATCTACTCTTTAGGCAATTGAATTT 58.310 33.333 10.34 0.00 0.00 1.82
577 578 7.836183 ACCATCTACTCTTTAGGCAATTGAATT 59.164 33.333 10.34 0.00 0.00 2.17
578 579 7.349598 ACCATCTACTCTTTAGGCAATTGAAT 58.650 34.615 10.34 0.00 0.00 2.57
579 580 6.721318 ACCATCTACTCTTTAGGCAATTGAA 58.279 36.000 10.34 0.00 0.00 2.69
580 581 6.313519 ACCATCTACTCTTTAGGCAATTGA 57.686 37.500 10.34 0.00 0.00 2.57
581 582 5.529060 GGACCATCTACTCTTTAGGCAATTG 59.471 44.000 0.00 0.00 0.00 2.32
582 583 5.398012 GGGACCATCTACTCTTTAGGCAATT 60.398 44.000 0.00 0.00 0.00 2.32
583 584 4.103311 GGGACCATCTACTCTTTAGGCAAT 59.897 45.833 0.00 0.00 0.00 3.56
584 585 3.454812 GGGACCATCTACTCTTTAGGCAA 59.545 47.826 0.00 0.00 0.00 4.52
585 586 3.039011 GGGACCATCTACTCTTTAGGCA 58.961 50.000 0.00 0.00 0.00 4.75
586 587 3.039011 TGGGACCATCTACTCTTTAGGC 58.961 50.000 0.00 0.00 0.00 3.93
587 588 4.441634 CGTTGGGACCATCTACTCTTTAGG 60.442 50.000 0.00 0.00 0.00 2.69
588 589 4.401519 TCGTTGGGACCATCTACTCTTTAG 59.598 45.833 0.00 0.00 0.00 1.85
589 590 4.346730 TCGTTGGGACCATCTACTCTTTA 58.653 43.478 0.00 0.00 0.00 1.85
590 591 3.170717 TCGTTGGGACCATCTACTCTTT 58.829 45.455 0.00 0.00 0.00 2.52
591 592 2.816411 TCGTTGGGACCATCTACTCTT 58.184 47.619 0.00 0.00 0.00 2.85
592 593 2.526888 TCGTTGGGACCATCTACTCT 57.473 50.000 0.00 0.00 0.00 3.24
593 594 3.259902 GTTTCGTTGGGACCATCTACTC 58.740 50.000 0.00 0.00 0.00 2.59
594 595 2.635915 TGTTTCGTTGGGACCATCTACT 59.364 45.455 0.00 0.00 0.00 2.57
595 596 3.000727 CTGTTTCGTTGGGACCATCTAC 58.999 50.000 0.00 0.00 0.00 2.59
596 597 2.614481 GCTGTTTCGTTGGGACCATCTA 60.614 50.000 0.00 0.00 0.00 1.98
597 598 1.882352 GCTGTTTCGTTGGGACCATCT 60.882 52.381 0.00 0.00 0.00 2.90
598 599 0.521735 GCTGTTTCGTTGGGACCATC 59.478 55.000 0.00 0.00 0.00 3.51
599 600 1.234615 CGCTGTTTCGTTGGGACCAT 61.235 55.000 0.00 0.00 0.00 3.55
600 601 1.890041 CGCTGTTTCGTTGGGACCA 60.890 57.895 0.00 0.00 0.00 4.02
601 602 2.943653 CGCTGTTTCGTTGGGACC 59.056 61.111 0.00 0.00 0.00 4.46
602 603 2.171489 GAGCGCTGTTTCGTTGGGAC 62.171 60.000 18.48 0.00 0.00 4.46
603 604 1.959226 GAGCGCTGTTTCGTTGGGA 60.959 57.895 18.48 0.00 0.00 4.37
604 605 2.556287 GAGCGCTGTTTCGTTGGG 59.444 61.111 18.48 0.00 0.00 4.12
605 606 2.170985 CGAGCGCTGTTTCGTTGG 59.829 61.111 18.48 0.00 32.44 3.77
606 607 2.497628 GCGAGCGCTGTTTCGTTG 60.498 61.111 18.48 0.00 38.96 4.10
616 617 3.241059 CACTACACGAGCGAGCGC 61.241 66.667 6.78 6.78 42.33 5.92
617 618 2.577112 CCACTACACGAGCGAGCG 60.577 66.667 0.00 0.00 37.29 5.03
618 619 1.989966 TAGCCACTACACGAGCGAGC 61.990 60.000 0.00 0.00 0.00 5.03
619 620 0.663688 ATAGCCACTACACGAGCGAG 59.336 55.000 0.00 0.00 0.00 5.03
620 621 1.957668 TATAGCCACTACACGAGCGA 58.042 50.000 0.00 0.00 0.00 4.93
621 622 2.991434 ATATAGCCACTACACGAGCG 57.009 50.000 0.00 0.00 0.00 5.03
622 623 3.760537 GCTATATAGCCACTACACGAGC 58.239 50.000 22.02 0.00 43.39 5.03
633 634 7.715788 TGGGACAACAGCAAGCTATATAGCC 62.716 48.000 27.40 14.69 43.40 3.93
634 635 4.743651 TGGGACAACAGCAAGCTATATAGC 60.744 45.833 24.55 24.55 42.90 2.97
635 636 4.960938 TGGGACAACAGCAAGCTATATAG 58.039 43.478 5.30 5.30 31.92 1.31
637 638 3.931907 TGGGACAACAGCAAGCTATAT 57.068 42.857 0.00 0.00 31.92 0.86
648 649 5.858796 AAGGTTGCCTCATTGGGACAACA 62.859 47.826 16.20 0.00 41.04 3.33
649 650 3.343516 AAGGTTGCCTCATTGGGACAAC 61.344 50.000 7.14 7.14 36.72 3.32
650 651 1.133199 AAGGTTGCCTCATTGGGACAA 60.133 47.619 0.00 0.00 36.72 3.18
651 652 0.482446 AAGGTTGCCTCATTGGGACA 59.518 50.000 0.00 0.00 35.25 4.02
652 653 1.177401 GAAGGTTGCCTCATTGGGAC 58.823 55.000 0.00 0.00 35.25 4.46
653 654 0.776810 TGAAGGTTGCCTCATTGGGA 59.223 50.000 0.00 0.00 36.00 4.37
654 655 0.890683 GTGAAGGTTGCCTCATTGGG 59.109 55.000 0.00 0.00 36.00 4.12
655 656 1.915141 AGTGAAGGTTGCCTCATTGG 58.085 50.000 0.00 0.00 39.35 3.16
656 657 2.229784 GGAAGTGAAGGTTGCCTCATTG 59.770 50.000 0.00 0.00 30.89 2.82
657 658 2.519013 GGAAGTGAAGGTTGCCTCATT 58.481 47.619 0.00 0.00 30.89 2.57
658 659 1.611673 CGGAAGTGAAGGTTGCCTCAT 60.612 52.381 0.00 0.00 30.89 2.90
659 660 0.250295 CGGAAGTGAAGGTTGCCTCA 60.250 55.000 0.00 0.00 30.89 3.86
660 661 0.250338 ACGGAAGTGAAGGTTGCCTC 60.250 55.000 0.00 0.00 46.97 4.70
661 662 1.837090 ACGGAAGTGAAGGTTGCCT 59.163 52.632 0.00 0.00 46.97 4.75
662 663 4.475527 ACGGAAGTGAAGGTTGCC 57.524 55.556 0.00 0.00 46.97 4.52
686 687 4.747009 GCCTACCCAAGAGAAGTGAAGTTT 60.747 45.833 0.00 0.00 0.00 2.66
702 705 1.146263 CTTGGATCGTGGCCTACCC 59.854 63.158 3.32 0.00 33.59 3.69
712 715 0.721718 GTGAAAGCGACCTTGGATCG 59.278 55.000 0.00 0.83 42.55 3.69
805 811 8.843262 TGATAGCAGAGAATGTCCAAATATTTG 58.157 33.333 19.40 19.40 37.90 2.32
825 832 8.171164 AGTGGCCTATTTAAAGAATTGATAGC 57.829 34.615 3.32 0.00 0.00 2.97
827 834 8.278639 TGGAGTGGCCTATTTAAAGAATTGATA 58.721 33.333 3.32 0.00 37.63 2.15
832 839 5.888161 CAGTGGAGTGGCCTATTTAAAGAAT 59.112 40.000 3.32 0.00 37.63 2.40
845 852 3.591254 GACGGACCAGTGGAGTGGC 62.591 68.421 18.40 2.41 41.90 5.01
884 891 1.151908 GGGTTGTGGGTTGTGGCTA 59.848 57.895 0.00 0.00 0.00 3.93
887 894 0.972983 TTGTGGGTTGTGGGTTGTGG 60.973 55.000 0.00 0.00 0.00 4.17
892 899 1.153046 CTCGTTGTGGGTTGTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
893 900 2.551912 GCTCGTTGTGGGTTGTGGG 61.552 63.158 0.00 0.00 0.00 4.61
895 902 1.095228 AGTGCTCGTTGTGGGTTGTG 61.095 55.000 0.00 0.00 0.00 3.33
896 903 0.393808 AAGTGCTCGTTGTGGGTTGT 60.394 50.000 0.00 0.00 0.00 3.32
897 904 0.029300 CAAGTGCTCGTTGTGGGTTG 59.971 55.000 0.00 0.00 0.00 3.77
898 905 1.724582 GCAAGTGCTCGTTGTGGGTT 61.725 55.000 0.00 0.00 38.21 4.11
899 906 2.186826 GCAAGTGCTCGTTGTGGGT 61.187 57.895 0.00 0.00 38.21 4.51
900 907 2.639286 GCAAGTGCTCGTTGTGGG 59.361 61.111 0.00 0.00 38.21 4.61
901 908 1.771073 TTCGCAAGTGCTCGTTGTGG 61.771 55.000 1.21 0.00 39.32 4.17
950 963 1.675552 TGGTGATGAGCTACGATCGA 58.324 50.000 24.34 4.52 0.00 3.59
951 964 2.492019 TTGGTGATGAGCTACGATCG 57.508 50.000 14.88 14.88 0.00 3.69
952 965 3.986572 CAGATTGGTGATGAGCTACGATC 59.013 47.826 0.00 0.00 0.00 3.69
953 966 3.801638 GCAGATTGGTGATGAGCTACGAT 60.802 47.826 0.00 0.00 0.00 3.73
1053 1071 3.680338 GAGGACTTCGCCGTCGACC 62.680 68.421 10.58 0.00 45.43 4.79
1066 1084 4.821589 CGGGAGCGGCTTGAGGAC 62.822 72.222 2.97 0.00 0.00 3.85
1380 1404 3.358076 GACGTCCTCCTGCTTCCGG 62.358 68.421 3.51 0.00 0.00 5.14
1382 1406 2.182030 CGACGTCCTCCTGCTTCC 59.818 66.667 10.58 0.00 0.00 3.46
1576 1644 6.352737 CCCTATCCCAAAACTACTAGCAGAAA 60.353 42.308 0.00 0.00 0.00 2.52
1578 1646 4.654262 CCCTATCCCAAAACTACTAGCAGA 59.346 45.833 0.00 0.00 0.00 4.26
1594 1662 4.412528 ACAACCTGAAGATAACCCCTATCC 59.587 45.833 0.00 0.00 37.70 2.59
1624 1701 1.522668 CATGGTATATGCACCCACCG 58.477 55.000 7.67 0.00 37.84 4.94
1637 1714 8.100791 ACTATCTTTAACTTGTCTTGCATGGTA 58.899 33.333 0.00 0.00 0.00 3.25
1714 1792 6.670233 AGCTTAGTACAGCAACGAGTATATC 58.330 40.000 7.83 0.00 42.84 1.63
1715 1793 6.636562 AGCTTAGTACAGCAACGAGTATAT 57.363 37.500 7.83 0.00 42.84 0.86
1717 1795 4.985538 AGCTTAGTACAGCAACGAGTAT 57.014 40.909 7.83 0.00 42.84 2.12
1718 1796 4.778534 AAGCTTAGTACAGCAACGAGTA 57.221 40.909 0.00 0.00 42.84 2.59
1719 1797 3.662247 AAGCTTAGTACAGCAACGAGT 57.338 42.857 0.00 0.00 42.84 4.18
1720 1798 4.734917 AGTAAGCTTAGTACAGCAACGAG 58.265 43.478 12.25 0.00 42.84 4.18
1721 1799 4.458295 AGAGTAAGCTTAGTACAGCAACGA 59.542 41.667 13.84 0.00 42.84 3.85
1722 1800 4.734917 AGAGTAAGCTTAGTACAGCAACG 58.265 43.478 13.84 0.00 42.84 4.10
1723 1801 7.422878 AAAAGAGTAAGCTTAGTACAGCAAC 57.577 36.000 13.84 5.56 42.84 4.17
1746 1824 9.467258 CAGAGCTTGTGAAATAATGAAGAAAAA 57.533 29.630 0.00 0.00 0.00 1.94
1751 1829 7.814642 ACTTCAGAGCTTGTGAAATAATGAAG 58.185 34.615 12.16 9.00 44.10 3.02
1752 1830 7.750229 ACTTCAGAGCTTGTGAAATAATGAA 57.250 32.000 12.16 0.00 33.56 2.57
1772 1850 2.325761 CGTGCTACTGTGGTGTACTTC 58.674 52.381 0.00 0.00 0.00 3.01
1775 1853 1.012486 GGCGTGCTACTGTGGTGTAC 61.012 60.000 0.00 0.00 0.00 2.90
1788 1866 1.014352 CCAGTTAATACCTGGCGTGC 58.986 55.000 0.00 0.00 42.81 5.34
1804 1882 1.938577 CAGCGGAGTCATTCAATCCAG 59.061 52.381 0.00 0.00 32.31 3.86
1810 1888 0.321346 TTGAGCAGCGGAGTCATTCA 59.679 50.000 0.00 0.00 0.00 2.57
1811 1889 1.005340 CTTGAGCAGCGGAGTCATTC 58.995 55.000 0.00 0.00 0.00 2.67
1832 1910 3.459232 TCCAGAGCCGAAATCATAGTG 57.541 47.619 0.00 0.00 0.00 2.74
1855 1938 7.726738 GTCCTATTGAGAATAGAAGGTACTCCT 59.273 40.741 5.13 0.00 42.80 3.69
1856 1939 7.506261 TGTCCTATTGAGAATAGAAGGTACTCC 59.494 40.741 5.13 0.00 42.80 3.85
1857 1940 8.354426 GTGTCCTATTGAGAATAGAAGGTACTC 58.646 40.741 5.13 0.00 42.80 2.59
1858 1941 7.839705 TGTGTCCTATTGAGAATAGAAGGTACT 59.160 37.037 5.13 0.00 42.80 2.73
1859 1942 7.921745 GTGTGTCCTATTGAGAATAGAAGGTAC 59.078 40.741 5.13 0.00 42.80 3.34
1860 1943 7.839705 AGTGTGTCCTATTGAGAATAGAAGGTA 59.160 37.037 5.13 0.00 42.80 3.08
1861 1944 6.670027 AGTGTGTCCTATTGAGAATAGAAGGT 59.330 38.462 5.13 0.00 42.80 3.50
1862 1945 7.118496 AGTGTGTCCTATTGAGAATAGAAGG 57.882 40.000 5.13 0.00 42.80 3.46
1863 1946 7.206687 GGAGTGTGTCCTATTGAGAATAGAAG 58.793 42.308 5.13 0.00 42.80 2.85
1865 1948 6.716934 GGAGTGTGTCCTATTGAGAATAGA 57.283 41.667 5.13 0.00 42.80 1.98
1909 1992 3.839293 AGATGTCTTGCAGAGTCGTTAC 58.161 45.455 0.00 0.00 0.00 2.50
1936 2019 1.597195 TCTGCGTGCTTAATTATGGCG 59.403 47.619 1.00 0.00 0.00 5.69
1951 2034 4.934075 TTCATTGACTGAATCTTCTGCG 57.066 40.909 0.00 0.00 38.97 5.18
2003 2086 9.996554 TCACATATTACTTGATAAATCATCGGT 57.003 29.630 0.00 0.00 36.56 4.69
2061 2197 2.198827 AAATGATGTTGTGGGAGCGA 57.801 45.000 0.00 0.00 0.00 4.93
2093 2231 0.620556 AGGGGACACTAGCATGGTTG 59.379 55.000 1.12 3.24 0.00 3.77
2098 2236 0.043334 AGGTGAGGGGACACTAGCAT 59.957 55.000 0.00 0.00 40.22 3.79
2131 2269 2.035961 TCTGTCTGATAACCGGCTATGC 59.964 50.000 0.00 0.00 0.00 3.14
2142 2281 4.203226 CTGCCACTACTCTCTGTCTGATA 58.797 47.826 0.00 0.00 0.00 2.15
2148 2287 1.169577 CGACTGCCACTACTCTCTGT 58.830 55.000 0.00 0.00 0.00 3.41
2155 2294 0.317479 ACTTGGTCGACTGCCACTAC 59.683 55.000 16.46 0.00 35.46 2.73
2168 2307 2.928396 ACAGCGGGGCTACTTGGT 60.928 61.111 0.00 0.00 36.40 3.67
2180 2319 2.099141 TCCCTCTCAAATTGACAGCG 57.901 50.000 0.00 0.00 0.00 5.18
2223 2363 8.096414 AGGGAAATTAATTTTGTTGACATGAGG 58.904 33.333 14.45 0.00 0.00 3.86
2251 2391 3.941483 GTGCATGCTAATGGTAGTTCACT 59.059 43.478 20.33 0.00 34.09 3.41
2346 2487 5.682943 TTTGAATCCACTAAAACCTGTCG 57.317 39.130 0.00 0.00 0.00 4.35
2347 2488 5.461526 GCTTTGAATCCACTAAAACCTGTC 58.538 41.667 0.00 0.00 0.00 3.51
2350 2491 3.057526 GCGCTTTGAATCCACTAAAACCT 60.058 43.478 0.00 0.00 0.00 3.50
2357 2498 0.037326 TCGAGCGCTTTGAATCCACT 60.037 50.000 13.26 0.00 0.00 4.00
2368 2509 0.176680 AGTCCATTTCATCGAGCGCT 59.823 50.000 11.27 11.27 0.00 5.92
2400 2544 4.887748 TGAGTCATCCTCTGTTCTTGTTC 58.112 43.478 0.00 0.00 41.11 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.