Multiple sequence alignment - TraesCS6A01G043000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G043000 chr6A 100.000 2480 0 0 1 2480 22554335 22556814 0.000000e+00 4580.0
1 TraesCS6A01G043000 chr6D 91.115 1587 85 29 491 2067 24028769 24030309 0.000000e+00 2098.0
2 TraesCS6A01G043000 chr6D 86.275 408 27 6 2079 2458 24033706 24034112 1.370000e-112 416.0
3 TraesCS6A01G043000 chr6B 95.196 1020 29 13 491 1497 38970815 38971827 0.000000e+00 1594.0
4 TraesCS6A01G043000 chr6B 89.706 476 30 11 1577 2040 38971875 38972343 7.640000e-165 590.0
5 TraesCS6A01G043000 chr6B 91.473 129 11 0 2329 2457 39031068 39031196 7.050000e-41 178.0
6 TraesCS6A01G043000 chr3D 86.816 402 35 8 78 466 448530473 448530869 1.360000e-117 433.0
7 TraesCS6A01G043000 chr2A 85.678 398 40 8 78 462 524848814 524849207 1.070000e-108 403.0
8 TraesCS6A01G043000 chr2A 84.691 307 41 3 1175 1481 29262266 29262566 4.010000e-78 302.0
9 TraesCS6A01G043000 chr3A 85.678 398 37 8 78 462 64059837 64059447 3.840000e-108 401.0
10 TraesCS6A01G043000 chr3A 89.600 125 13 0 2334 2458 369396832 369396956 2.550000e-35 159.0
11 TraesCS6A01G043000 chr4B 84.788 401 37 10 79 462 603020010 603020403 5.000000e-102 381.0
12 TraesCS6A01G043000 chr7A 80.244 491 83 12 1000 1480 556921314 556920828 8.430000e-95 357.0
13 TraesCS6A01G043000 chr7B 79.796 490 85 11 1000 1479 519524475 519523990 6.570000e-91 344.0
14 TraesCS6A01G043000 chr2B 86.084 309 33 7 1175 1481 42264520 42264820 8.550000e-85 324.0
15 TraesCS6A01G043000 chr2B 82.090 134 18 3 999 1132 42264178 42264305 2.610000e-20 110.0
16 TraesCS6A01G043000 chr5B 89.362 94 6 2 336 426 37304836 37304744 5.600000e-22 115.0
17 TraesCS6A01G043000 chr7D 93.182 44 2 1 1882 1925 529381946 529381988 2.060000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G043000 chr6A 22554335 22556814 2479 False 4580 4580 100.000 1 2480 1 chr6A.!!$F1 2479
1 TraesCS6A01G043000 chr6D 24028769 24034112 5343 False 1257 2098 88.695 491 2458 2 chr6D.!!$F1 1967
2 TraesCS6A01G043000 chr6B 38970815 38972343 1528 False 1092 1594 92.451 491 2040 2 chr6B.!!$F2 1549
3 TraesCS6A01G043000 chr2B 42264178 42264820 642 False 217 324 84.087 999 1481 2 chr2B.!!$F1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.036732 ACACATGCTGGTTCGTCCAT 59.963 50.0 0.0 0.0 46.12 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1711 2.242196 AGCAAGGCCTGGCTAAAAGATA 59.758 45.455 34.29 0.0 38.9 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.991230 ATGTCCACCCACTAGCACC 59.009 57.895 0.00 0.00 0.00 5.01
19 20 0.840288 ATGTCCACCCACTAGCACCA 60.840 55.000 0.00 0.00 0.00 4.17
20 21 1.003718 GTCCACCCACTAGCACCAC 60.004 63.158 0.00 0.00 0.00 4.16
21 22 2.221299 TCCACCCACTAGCACCACC 61.221 63.158 0.00 0.00 0.00 4.61
22 23 2.224159 CCACCCACTAGCACCACCT 61.224 63.158 0.00 0.00 0.00 4.00
23 24 1.296715 CACCCACTAGCACCACCTC 59.703 63.158 0.00 0.00 0.00 3.85
24 25 1.918800 ACCCACTAGCACCACCTCC 60.919 63.158 0.00 0.00 0.00 4.30
25 26 2.670148 CCCACTAGCACCACCTCCC 61.670 68.421 0.00 0.00 0.00 4.30
26 27 1.613630 CCACTAGCACCACCTCCCT 60.614 63.158 0.00 0.00 0.00 4.20
27 28 1.201429 CCACTAGCACCACCTCCCTT 61.201 60.000 0.00 0.00 0.00 3.95
28 29 0.693049 CACTAGCACCACCTCCCTTT 59.307 55.000 0.00 0.00 0.00 3.11
29 30 1.073923 CACTAGCACCACCTCCCTTTT 59.926 52.381 0.00 0.00 0.00 2.27
30 31 1.780919 ACTAGCACCACCTCCCTTTTT 59.219 47.619 0.00 0.00 0.00 1.94
31 32 2.162681 CTAGCACCACCTCCCTTTTTG 58.837 52.381 0.00 0.00 0.00 2.44
32 33 0.261696 AGCACCACCTCCCTTTTTGT 59.738 50.000 0.00 0.00 0.00 2.83
33 34 0.673985 GCACCACCTCCCTTTTTGTC 59.326 55.000 0.00 0.00 0.00 3.18
34 35 2.026905 GCACCACCTCCCTTTTTGTCA 61.027 52.381 0.00 0.00 0.00 3.58
35 36 1.956477 CACCACCTCCCTTTTTGTCAG 59.044 52.381 0.00 0.00 0.00 3.51
36 37 1.850345 ACCACCTCCCTTTTTGTCAGA 59.150 47.619 0.00 0.00 0.00 3.27
37 38 2.230660 CCACCTCCCTTTTTGTCAGAC 58.769 52.381 0.00 0.00 0.00 3.51
38 39 2.158608 CCACCTCCCTTTTTGTCAGACT 60.159 50.000 1.31 0.00 0.00 3.24
39 40 3.142174 CACCTCCCTTTTTGTCAGACTC 58.858 50.000 1.31 0.00 0.00 3.36
40 41 3.049344 ACCTCCCTTTTTGTCAGACTCT 58.951 45.455 1.31 0.00 0.00 3.24
41 42 4.040461 CACCTCCCTTTTTGTCAGACTCTA 59.960 45.833 1.31 0.00 0.00 2.43
42 43 4.846940 ACCTCCCTTTTTGTCAGACTCTAT 59.153 41.667 1.31 0.00 0.00 1.98
43 44 5.310857 ACCTCCCTTTTTGTCAGACTCTATT 59.689 40.000 1.31 0.00 0.00 1.73
44 45 6.183361 ACCTCCCTTTTTGTCAGACTCTATTT 60.183 38.462 1.31 0.00 0.00 1.40
45 46 6.717084 CCTCCCTTTTTGTCAGACTCTATTTT 59.283 38.462 1.31 0.00 0.00 1.82
46 47 7.094592 CCTCCCTTTTTGTCAGACTCTATTTTC 60.095 40.741 1.31 0.00 0.00 2.29
47 48 6.426937 TCCCTTTTTGTCAGACTCTATTTTCG 59.573 38.462 1.31 0.00 0.00 3.46
48 49 6.426937 CCCTTTTTGTCAGACTCTATTTTCGA 59.573 38.462 1.31 0.00 0.00 3.71
49 50 7.291567 CCTTTTTGTCAGACTCTATTTTCGAC 58.708 38.462 1.31 0.00 0.00 4.20
50 51 7.042051 CCTTTTTGTCAGACTCTATTTTCGACA 60.042 37.037 1.31 0.00 0.00 4.35
51 52 6.764877 TTTGTCAGACTCTATTTTCGACAC 57.235 37.500 1.31 0.00 32.06 3.67
52 53 5.447624 TGTCAGACTCTATTTTCGACACA 57.552 39.130 1.31 0.00 0.00 3.72
53 54 6.025749 TGTCAGACTCTATTTTCGACACAT 57.974 37.500 1.31 0.00 0.00 3.21
54 55 5.863935 TGTCAGACTCTATTTTCGACACATG 59.136 40.000 1.31 0.00 0.00 3.21
55 56 4.864806 TCAGACTCTATTTTCGACACATGC 59.135 41.667 0.00 0.00 0.00 4.06
56 57 4.867047 CAGACTCTATTTTCGACACATGCT 59.133 41.667 0.00 0.00 0.00 3.79
57 58 4.867047 AGACTCTATTTTCGACACATGCTG 59.133 41.667 0.00 0.00 0.00 4.41
58 59 3.935203 ACTCTATTTTCGACACATGCTGG 59.065 43.478 0.00 0.00 0.00 4.85
59 60 3.935203 CTCTATTTTCGACACATGCTGGT 59.065 43.478 0.00 0.00 0.00 4.00
60 61 4.323417 TCTATTTTCGACACATGCTGGTT 58.677 39.130 0.00 0.00 0.00 3.67
61 62 3.559238 ATTTTCGACACATGCTGGTTC 57.441 42.857 0.00 0.00 0.00 3.62
62 63 0.865111 TTTCGACACATGCTGGTTCG 59.135 50.000 0.00 0.00 0.00 3.95
63 64 0.249699 TTCGACACATGCTGGTTCGT 60.250 50.000 0.00 0.00 0.00 3.85
64 65 0.666274 TCGACACATGCTGGTTCGTC 60.666 55.000 0.00 0.00 0.00 4.20
65 66 1.626654 CGACACATGCTGGTTCGTCC 61.627 60.000 0.00 0.00 0.00 4.79
66 67 0.602638 GACACATGCTGGTTCGTCCA 60.603 55.000 0.00 2.64 45.01 4.02
67 68 0.036732 ACACATGCTGGTTCGTCCAT 59.963 50.000 0.00 0.00 46.12 3.41
68 69 0.729116 CACATGCTGGTTCGTCCATC 59.271 55.000 0.00 0.57 46.12 3.51
69 70 0.392998 ACATGCTGGTTCGTCCATCC 60.393 55.000 0.00 0.00 46.12 3.51
70 71 0.392863 CATGCTGGTTCGTCCATCCA 60.393 55.000 3.00 4.64 46.12 3.41
71 72 0.107508 ATGCTGGTTCGTCCATCCAG 60.108 55.000 6.13 6.13 46.12 3.86
76 77 2.462723 TGGTTCGTCCATCCAGATACA 58.537 47.619 0.00 0.00 41.93 2.29
77 78 3.038280 TGGTTCGTCCATCCAGATACAT 58.962 45.455 0.00 0.00 41.93 2.29
78 79 3.181466 TGGTTCGTCCATCCAGATACATG 60.181 47.826 0.00 0.00 41.93 3.21
79 80 2.802816 GTTCGTCCATCCAGATACATGC 59.197 50.000 0.00 0.00 0.00 4.06
80 81 2.038659 TCGTCCATCCAGATACATGCA 58.961 47.619 0.00 0.00 0.00 3.96
81 82 2.036346 TCGTCCATCCAGATACATGCAG 59.964 50.000 0.00 0.00 0.00 4.41
82 83 2.036346 CGTCCATCCAGATACATGCAGA 59.964 50.000 0.00 0.00 0.00 4.26
83 84 3.397482 GTCCATCCAGATACATGCAGAC 58.603 50.000 0.00 0.00 0.00 3.51
84 85 3.040477 TCCATCCAGATACATGCAGACA 58.960 45.455 0.00 0.00 0.00 3.41
85 86 3.649502 TCCATCCAGATACATGCAGACAT 59.350 43.478 0.00 0.00 36.79 3.06
86 87 4.001652 CCATCCAGATACATGCAGACATC 58.998 47.826 0.00 0.00 32.87 3.06
87 88 4.262938 CCATCCAGATACATGCAGACATCT 60.263 45.833 0.00 0.00 32.87 2.90
88 89 5.306394 CATCCAGATACATGCAGACATCTT 58.694 41.667 0.00 0.00 32.87 2.40
89 90 5.363562 TCCAGATACATGCAGACATCTTT 57.636 39.130 0.00 0.00 32.87 2.52
90 91 5.748402 TCCAGATACATGCAGACATCTTTT 58.252 37.500 0.00 0.00 32.87 2.27
91 92 6.182627 TCCAGATACATGCAGACATCTTTTT 58.817 36.000 0.00 0.00 32.87 1.94
108 109 3.755965 TTTTTGCGTGCGATGATGTAT 57.244 38.095 0.00 0.00 0.00 2.29
109 110 3.755965 TTTTGCGTGCGATGATGTATT 57.244 38.095 0.00 0.00 0.00 1.89
110 111 2.735643 TTGCGTGCGATGATGTATTG 57.264 45.000 0.00 0.00 0.00 1.90
111 112 0.936600 TGCGTGCGATGATGTATTGG 59.063 50.000 0.00 0.00 0.00 3.16
112 113 1.217001 GCGTGCGATGATGTATTGGA 58.783 50.000 0.00 0.00 0.00 3.53
113 114 1.193203 GCGTGCGATGATGTATTGGAG 59.807 52.381 0.00 0.00 0.00 3.86
114 115 1.794701 CGTGCGATGATGTATTGGAGG 59.205 52.381 0.00 0.00 0.00 4.30
115 116 1.532868 GTGCGATGATGTATTGGAGGC 59.467 52.381 0.00 0.00 0.00 4.70
116 117 1.417517 TGCGATGATGTATTGGAGGCT 59.582 47.619 0.00 0.00 0.00 4.58
117 118 1.802960 GCGATGATGTATTGGAGGCTG 59.197 52.381 0.00 0.00 0.00 4.85
118 119 2.548707 GCGATGATGTATTGGAGGCTGA 60.549 50.000 0.00 0.00 0.00 4.26
119 120 3.732212 CGATGATGTATTGGAGGCTGAA 58.268 45.455 0.00 0.00 0.00 3.02
120 121 4.129380 CGATGATGTATTGGAGGCTGAAA 58.871 43.478 0.00 0.00 0.00 2.69
121 122 4.758674 CGATGATGTATTGGAGGCTGAAAT 59.241 41.667 0.00 0.00 0.00 2.17
122 123 5.106791 CGATGATGTATTGGAGGCTGAAATC 60.107 44.000 0.00 0.00 0.00 2.17
123 124 5.378230 TGATGTATTGGAGGCTGAAATCT 57.622 39.130 0.00 0.00 0.00 2.40
124 125 5.759059 TGATGTATTGGAGGCTGAAATCTT 58.241 37.500 0.00 0.00 0.00 2.40
125 126 6.899089 TGATGTATTGGAGGCTGAAATCTTA 58.101 36.000 0.00 0.00 0.00 2.10
126 127 7.520798 TGATGTATTGGAGGCTGAAATCTTAT 58.479 34.615 0.00 0.00 0.00 1.73
127 128 7.663081 TGATGTATTGGAGGCTGAAATCTTATC 59.337 37.037 0.00 0.00 0.00 1.75
128 129 5.991606 TGTATTGGAGGCTGAAATCTTATCG 59.008 40.000 0.00 0.00 0.00 2.92
129 130 4.753516 TTGGAGGCTGAAATCTTATCGA 57.246 40.909 0.00 0.00 0.00 3.59
130 131 4.963318 TGGAGGCTGAAATCTTATCGAT 57.037 40.909 2.16 2.16 0.00 3.59
131 132 4.887748 TGGAGGCTGAAATCTTATCGATC 58.112 43.478 0.00 0.00 0.00 3.69
132 133 4.249661 GGAGGCTGAAATCTTATCGATCC 58.750 47.826 0.00 0.00 0.00 3.36
133 134 3.919216 AGGCTGAAATCTTATCGATCCG 58.081 45.455 0.00 0.00 0.00 4.18
134 135 3.574396 AGGCTGAAATCTTATCGATCCGA 59.426 43.478 0.00 0.00 41.13 4.55
135 136 3.675698 GGCTGAAATCTTATCGATCCGAC 59.324 47.826 0.00 0.00 39.18 4.79
136 137 4.299155 GCTGAAATCTTATCGATCCGACA 58.701 43.478 0.00 0.00 39.18 4.35
137 138 4.745125 GCTGAAATCTTATCGATCCGACAA 59.255 41.667 0.00 0.00 39.18 3.18
138 139 5.107683 GCTGAAATCTTATCGATCCGACAAG 60.108 44.000 0.00 0.00 41.05 3.16
139 140 5.289595 TGAAATCTTATCGATCCGACAAGG 58.710 41.667 0.00 0.00 40.26 3.61
147 148 4.771127 TCCGACAAGGACTGTTGC 57.229 55.556 0.00 0.00 45.98 4.17
148 149 2.133195 TCCGACAAGGACTGTTGCT 58.867 52.632 0.00 0.00 45.98 3.91
149 150 1.334160 TCCGACAAGGACTGTTGCTA 58.666 50.000 0.00 0.00 45.98 3.49
150 151 1.272490 TCCGACAAGGACTGTTGCTAG 59.728 52.381 0.00 0.00 45.98 3.42
151 152 1.071605 CGACAAGGACTGTTGCTAGC 58.928 55.000 8.10 8.10 38.84 3.42
152 153 1.337260 CGACAAGGACTGTTGCTAGCT 60.337 52.381 17.23 0.00 38.84 3.32
153 154 2.342179 GACAAGGACTGTTGCTAGCTC 58.658 52.381 17.23 9.73 38.84 4.09
154 155 1.974236 ACAAGGACTGTTGCTAGCTCT 59.026 47.619 17.23 0.00 32.99 4.09
155 156 3.165875 ACAAGGACTGTTGCTAGCTCTA 58.834 45.455 17.23 0.70 32.99 2.43
156 157 3.194542 ACAAGGACTGTTGCTAGCTCTAG 59.805 47.826 17.23 12.88 32.99 2.43
157 158 3.094484 AGGACTGTTGCTAGCTCTAGT 57.906 47.619 17.23 15.91 35.65 2.57
158 159 2.757868 AGGACTGTTGCTAGCTCTAGTG 59.242 50.000 17.23 4.08 35.65 2.74
159 160 2.755655 GGACTGTTGCTAGCTCTAGTGA 59.244 50.000 17.23 0.00 35.65 3.41
160 161 3.193691 GGACTGTTGCTAGCTCTAGTGAA 59.806 47.826 17.23 0.00 35.65 3.18
161 162 4.420168 GACTGTTGCTAGCTCTAGTGAAG 58.580 47.826 17.23 4.96 35.65 3.02
162 163 3.186119 CTGTTGCTAGCTCTAGTGAAGC 58.814 50.000 17.23 10.83 35.65 3.86
163 164 2.562738 TGTTGCTAGCTCTAGTGAAGCA 59.437 45.455 17.23 14.59 41.19 3.91
165 166 4.478206 TTGCTAGCTCTAGTGAAGCAAT 57.522 40.909 21.41 1.57 45.47 3.56
166 167 4.052159 TGCTAGCTCTAGTGAAGCAATC 57.948 45.455 17.23 1.93 40.05 2.67
167 168 3.703556 TGCTAGCTCTAGTGAAGCAATCT 59.296 43.478 17.23 0.00 40.05 2.40
168 169 4.889995 TGCTAGCTCTAGTGAAGCAATCTA 59.110 41.667 17.23 0.00 40.05 1.98
169 170 5.219633 GCTAGCTCTAGTGAAGCAATCTAC 58.780 45.833 7.70 0.00 35.65 2.59
170 171 4.664150 AGCTCTAGTGAAGCAATCTACC 57.336 45.455 4.87 0.00 0.00 3.18
171 172 4.026744 AGCTCTAGTGAAGCAATCTACCA 58.973 43.478 4.87 0.00 0.00 3.25
172 173 4.467795 AGCTCTAGTGAAGCAATCTACCAA 59.532 41.667 4.87 0.00 0.00 3.67
173 174 5.130145 AGCTCTAGTGAAGCAATCTACCAAT 59.870 40.000 4.87 0.00 0.00 3.16
174 175 5.819901 GCTCTAGTGAAGCAATCTACCAATT 59.180 40.000 0.00 0.00 0.00 2.32
175 176 6.238320 GCTCTAGTGAAGCAATCTACCAATTG 60.238 42.308 0.00 0.00 39.22 2.32
176 177 6.946340 TCTAGTGAAGCAATCTACCAATTGA 58.054 36.000 7.12 0.00 38.64 2.57
177 178 7.568349 TCTAGTGAAGCAATCTACCAATTGAT 58.432 34.615 7.12 0.00 38.64 2.57
178 179 6.446781 AGTGAAGCAATCTACCAATTGATG 57.553 37.500 7.12 0.00 38.64 3.07
179 180 5.948162 AGTGAAGCAATCTACCAATTGATGT 59.052 36.000 7.12 0.00 38.64 3.06
180 181 6.435277 AGTGAAGCAATCTACCAATTGATGTT 59.565 34.615 7.12 0.00 38.64 2.71
181 182 6.529125 GTGAAGCAATCTACCAATTGATGTTG 59.471 38.462 7.12 5.94 38.64 3.33
182 183 6.433716 TGAAGCAATCTACCAATTGATGTTGA 59.566 34.615 7.12 4.33 38.64 3.18
183 184 6.839124 AGCAATCTACCAATTGATGTTGAA 57.161 33.333 7.12 0.00 38.64 2.69
184 185 7.230849 AGCAATCTACCAATTGATGTTGAAA 57.769 32.000 7.12 0.00 38.64 2.69
185 186 7.318141 AGCAATCTACCAATTGATGTTGAAAG 58.682 34.615 7.12 2.86 38.64 2.62
186 187 6.035327 GCAATCTACCAATTGATGTTGAAAGC 59.965 38.462 7.12 8.32 38.64 3.51
187 188 5.295431 TCTACCAATTGATGTTGAAAGCG 57.705 39.130 7.12 0.00 0.00 4.68
188 189 5.000591 TCTACCAATTGATGTTGAAAGCGA 58.999 37.500 7.12 0.00 0.00 4.93
189 190 3.900941 ACCAATTGATGTTGAAAGCGAC 58.099 40.909 7.12 0.00 0.00 5.19
190 191 3.317711 ACCAATTGATGTTGAAAGCGACA 59.682 39.130 7.12 0.00 42.42 4.35
191 192 3.916172 CCAATTGATGTTGAAAGCGACAG 59.084 43.478 7.12 0.00 41.55 3.51
192 193 4.539870 CAATTGATGTTGAAAGCGACAGT 58.460 39.130 0.00 0.00 41.55 3.55
193 194 4.836125 ATTGATGTTGAAAGCGACAGTT 57.164 36.364 0.00 0.00 41.55 3.16
194 195 4.630894 TTGATGTTGAAAGCGACAGTTT 57.369 36.364 0.00 0.00 41.55 2.66
195 196 3.951306 TGATGTTGAAAGCGACAGTTTG 58.049 40.909 0.00 0.00 41.55 2.93
196 197 3.625313 TGATGTTGAAAGCGACAGTTTGA 59.375 39.130 0.00 0.00 41.55 2.69
197 198 4.095632 TGATGTTGAAAGCGACAGTTTGAA 59.904 37.500 0.00 0.00 41.55 2.69
198 199 4.014847 TGTTGAAAGCGACAGTTTGAAG 57.985 40.909 0.00 0.00 33.47 3.02
199 200 3.181501 TGTTGAAAGCGACAGTTTGAAGG 60.182 43.478 0.00 0.00 33.47 3.46
200 201 1.333619 TGAAAGCGACAGTTTGAAGGC 59.666 47.619 0.00 0.00 0.00 4.35
201 202 1.333619 GAAAGCGACAGTTTGAAGGCA 59.666 47.619 0.00 0.00 0.00 4.75
202 203 0.947244 AAGCGACAGTTTGAAGGCAG 59.053 50.000 0.00 0.00 0.00 4.85
203 204 0.179045 AGCGACAGTTTGAAGGCAGT 60.179 50.000 0.00 0.00 0.00 4.40
204 205 0.663153 GCGACAGTTTGAAGGCAGTT 59.337 50.000 0.00 0.00 0.00 3.16
205 206 1.871039 GCGACAGTTTGAAGGCAGTTA 59.129 47.619 0.00 0.00 0.00 2.24
206 207 2.289547 GCGACAGTTTGAAGGCAGTTAA 59.710 45.455 0.00 0.00 0.00 2.01
207 208 3.848554 GCGACAGTTTGAAGGCAGTTAAC 60.849 47.826 0.00 0.00 0.00 2.01
208 209 3.311322 CGACAGTTTGAAGGCAGTTAACA 59.689 43.478 8.61 0.00 0.00 2.41
209 210 4.024048 CGACAGTTTGAAGGCAGTTAACAT 60.024 41.667 8.61 0.00 0.00 2.71
210 211 5.186996 ACAGTTTGAAGGCAGTTAACATG 57.813 39.130 8.61 4.68 0.00 3.21
211 212 4.037923 ACAGTTTGAAGGCAGTTAACATGG 59.962 41.667 8.61 0.00 0.00 3.66
212 213 4.037923 CAGTTTGAAGGCAGTTAACATGGT 59.962 41.667 8.61 0.00 0.00 3.55
213 214 4.037923 AGTTTGAAGGCAGTTAACATGGTG 59.962 41.667 8.61 0.00 0.00 4.17
214 215 3.500448 TGAAGGCAGTTAACATGGTGA 57.500 42.857 8.61 0.00 0.00 4.02
215 216 3.826524 TGAAGGCAGTTAACATGGTGAA 58.173 40.909 8.61 0.00 0.00 3.18
216 217 4.211125 TGAAGGCAGTTAACATGGTGAAA 58.789 39.130 8.61 0.00 0.00 2.69
217 218 4.646945 TGAAGGCAGTTAACATGGTGAAAA 59.353 37.500 8.61 0.00 0.00 2.29
218 219 5.304101 TGAAGGCAGTTAACATGGTGAAAAT 59.696 36.000 8.61 0.00 0.00 1.82
219 220 5.806654 AGGCAGTTAACATGGTGAAAATT 57.193 34.783 8.61 0.00 0.00 1.82
220 221 6.909550 AGGCAGTTAACATGGTGAAAATTA 57.090 33.333 8.61 0.00 0.00 1.40
221 222 6.924111 AGGCAGTTAACATGGTGAAAATTAG 58.076 36.000 8.61 0.00 0.00 1.73
222 223 6.493458 AGGCAGTTAACATGGTGAAAATTAGT 59.507 34.615 8.61 0.00 0.00 2.24
223 224 6.586082 GGCAGTTAACATGGTGAAAATTAGTG 59.414 38.462 8.61 0.00 0.00 2.74
224 225 6.586082 GCAGTTAACATGGTGAAAATTAGTGG 59.414 38.462 8.61 0.00 0.00 4.00
225 226 7.523052 GCAGTTAACATGGTGAAAATTAGTGGA 60.523 37.037 8.61 0.00 0.00 4.02
226 227 8.023128 CAGTTAACATGGTGAAAATTAGTGGAG 58.977 37.037 8.61 0.00 0.00 3.86
227 228 7.942341 AGTTAACATGGTGAAAATTAGTGGAGA 59.058 33.333 8.61 0.00 0.00 3.71
228 229 8.739972 GTTAACATGGTGAAAATTAGTGGAGAT 58.260 33.333 0.00 0.00 0.00 2.75
229 230 9.967451 TTAACATGGTGAAAATTAGTGGAGATA 57.033 29.630 0.00 0.00 0.00 1.98
230 231 7.865706 ACATGGTGAAAATTAGTGGAGATAC 57.134 36.000 0.00 0.00 0.00 2.24
231 232 7.402054 ACATGGTGAAAATTAGTGGAGATACA 58.598 34.615 0.00 0.00 0.00 2.29
232 233 7.888021 ACATGGTGAAAATTAGTGGAGATACAA 59.112 33.333 0.00 0.00 0.00 2.41
233 234 8.739039 CATGGTGAAAATTAGTGGAGATACAAA 58.261 33.333 0.00 0.00 0.00 2.83
234 235 8.106247 TGGTGAAAATTAGTGGAGATACAAAC 57.894 34.615 0.00 0.00 0.00 2.93
235 236 7.721842 TGGTGAAAATTAGTGGAGATACAAACA 59.278 33.333 0.00 0.00 0.00 2.83
236 237 8.237267 GGTGAAAATTAGTGGAGATACAAACAG 58.763 37.037 0.00 0.00 0.00 3.16
237 238 8.999431 GTGAAAATTAGTGGAGATACAAACAGA 58.001 33.333 0.00 0.00 0.00 3.41
238 239 9.739276 TGAAAATTAGTGGAGATACAAACAGAT 57.261 29.630 0.00 0.00 0.00 2.90
240 241 9.739276 AAAATTAGTGGAGATACAAACAGATCA 57.261 29.630 0.00 0.00 0.00 2.92
241 242 9.739276 AAATTAGTGGAGATACAAACAGATCAA 57.261 29.630 0.00 0.00 0.00 2.57
242 243 9.739276 AATTAGTGGAGATACAAACAGATCAAA 57.261 29.630 0.00 0.00 0.00 2.69
243 244 9.739276 ATTAGTGGAGATACAAACAGATCAAAA 57.261 29.630 0.00 0.00 0.00 2.44
244 245 9.739276 TTAGTGGAGATACAAACAGATCAAAAT 57.261 29.630 0.00 0.00 0.00 1.82
246 247 9.167311 AGTGGAGATACAAACAGATCAAAATAC 57.833 33.333 0.00 0.00 0.00 1.89
247 248 8.946085 GTGGAGATACAAACAGATCAAAATACA 58.054 33.333 0.00 0.00 0.00 2.29
248 249 9.685276 TGGAGATACAAACAGATCAAAATACAT 57.315 29.630 0.00 0.00 0.00 2.29
262 263 9.214953 GATCAAAATACATCTTTCTTGTTAGCG 57.785 33.333 0.00 0.00 0.00 4.26
263 264 8.317891 TCAAAATACATCTTTCTTGTTAGCGA 57.682 30.769 0.00 0.00 0.00 4.93
264 265 8.779303 TCAAAATACATCTTTCTTGTTAGCGAA 58.221 29.630 0.00 0.00 0.00 4.70
265 266 9.393249 CAAAATACATCTTTCTTGTTAGCGAAA 57.607 29.630 0.00 0.00 0.00 3.46
271 272 9.959749 ACATCTTTCTTGTTAGCGAAATTAAAA 57.040 25.926 0.00 0.00 0.00 1.52
281 282 9.956797 TGTTAGCGAAATTAAAAATAGTACGAC 57.043 29.630 0.00 0.00 0.00 4.34
282 283 9.413611 GTTAGCGAAATTAAAAATAGTACGACC 57.586 33.333 0.00 0.00 0.00 4.79
283 284 6.699063 AGCGAAATTAAAAATAGTACGACCG 58.301 36.000 0.00 0.00 0.00 4.79
284 285 6.531240 AGCGAAATTAAAAATAGTACGACCGA 59.469 34.615 0.00 0.00 0.00 4.69
285 286 7.063308 AGCGAAATTAAAAATAGTACGACCGAA 59.937 33.333 0.00 0.00 0.00 4.30
286 287 7.160936 GCGAAATTAAAAATAGTACGACCGAAC 59.839 37.037 0.00 0.00 0.00 3.95
287 288 7.365442 CGAAATTAAAAATAGTACGACCGAACG 59.635 37.037 0.00 0.00 39.31 3.95
289 290 8.682128 AATTAAAAATAGTACGACCGAACGTA 57.318 30.769 9.26 9.26 44.72 3.57
290 291 7.719689 TTAAAAATAGTACGACCGAACGTAG 57.280 36.000 12.61 0.00 46.70 3.51
291 292 3.325230 AATAGTACGACCGAACGTAGC 57.675 47.619 12.61 8.92 46.70 3.58
292 293 2.010145 TAGTACGACCGAACGTAGCT 57.990 50.000 12.61 13.72 46.70 3.32
293 294 0.723981 AGTACGACCGAACGTAGCTC 59.276 55.000 12.61 4.21 46.70 4.09
294 295 0.723981 GTACGACCGAACGTAGCTCT 59.276 55.000 12.61 0.00 46.70 4.09
295 296 1.129437 GTACGACCGAACGTAGCTCTT 59.871 52.381 12.61 0.00 46.70 2.85
296 297 0.109873 ACGACCGAACGTAGCTCTTG 60.110 55.000 0.00 0.00 44.72 3.02
297 298 0.109873 CGACCGAACGTAGCTCTTGT 60.110 55.000 0.00 0.00 0.00 3.16
298 299 1.129251 CGACCGAACGTAGCTCTTGTA 59.871 52.381 0.00 0.00 0.00 2.41
299 300 2.223203 CGACCGAACGTAGCTCTTGTAT 60.223 50.000 0.00 0.00 0.00 2.29
300 301 3.730061 CGACCGAACGTAGCTCTTGTATT 60.730 47.826 0.00 0.00 0.00 1.89
301 302 4.494690 CGACCGAACGTAGCTCTTGTATTA 60.495 45.833 0.00 0.00 0.00 0.98
302 303 4.666237 ACCGAACGTAGCTCTTGTATTAC 58.334 43.478 0.00 0.00 0.00 1.89
303 304 4.397417 ACCGAACGTAGCTCTTGTATTACT 59.603 41.667 0.00 0.00 0.00 2.24
304 305 4.968788 CCGAACGTAGCTCTTGTATTACTC 59.031 45.833 0.00 0.00 0.00 2.59
305 306 5.448225 CCGAACGTAGCTCTTGTATTACTCA 60.448 44.000 0.00 0.00 0.00 3.41
306 307 6.200100 CGAACGTAGCTCTTGTATTACTCAT 58.800 40.000 0.00 0.00 0.00 2.90
307 308 7.350467 CGAACGTAGCTCTTGTATTACTCATA 58.650 38.462 0.00 0.00 0.00 2.15
308 309 8.016229 CGAACGTAGCTCTTGTATTACTCATAT 58.984 37.037 0.00 0.00 0.00 1.78
309 310 9.680315 GAACGTAGCTCTTGTATTACTCATATT 57.320 33.333 0.00 0.00 0.00 1.28
311 312 9.464714 ACGTAGCTCTTGTATTACTCATATTTG 57.535 33.333 0.00 0.00 0.00 2.32
312 313 9.678941 CGTAGCTCTTGTATTACTCATATTTGA 57.321 33.333 0.00 0.00 0.00 2.69
352 353 9.949174 ATTTAAGTCATGTTTTGGCAAATTTTC 57.051 25.926 14.29 5.86 29.99 2.29
353 354 5.655893 AGTCATGTTTTGGCAAATTTTCG 57.344 34.783 14.29 2.34 29.99 3.46
354 355 5.355596 AGTCATGTTTTGGCAAATTTTCGA 58.644 33.333 14.29 4.68 29.99 3.71
355 356 5.814705 AGTCATGTTTTGGCAAATTTTCGAA 59.185 32.000 14.29 0.00 29.99 3.71
356 357 6.018832 AGTCATGTTTTGGCAAATTTTCGAAG 60.019 34.615 14.29 0.00 29.99 3.79
357 358 5.236047 TCATGTTTTGGCAAATTTTCGAAGG 59.764 36.000 14.29 0.00 0.00 3.46
358 359 4.759782 TGTTTTGGCAAATTTTCGAAGGA 58.240 34.783 14.29 0.00 0.00 3.36
359 360 4.568760 TGTTTTGGCAAATTTTCGAAGGAC 59.431 37.500 14.29 5.39 0.00 3.85
360 361 4.664150 TTTGGCAAATTTTCGAAGGACT 57.336 36.364 8.93 0.00 0.00 3.85
361 362 3.915437 TGGCAAATTTTCGAAGGACTC 57.085 42.857 0.00 0.00 0.00 3.36
362 363 3.218453 TGGCAAATTTTCGAAGGACTCA 58.782 40.909 0.00 0.00 0.00 3.41
363 364 3.634448 TGGCAAATTTTCGAAGGACTCAA 59.366 39.130 0.00 0.00 0.00 3.02
364 365 4.229876 GGCAAATTTTCGAAGGACTCAAG 58.770 43.478 0.00 0.00 0.00 3.02
365 366 4.229876 GCAAATTTTCGAAGGACTCAAGG 58.770 43.478 0.00 0.00 0.00 3.61
366 367 4.229876 CAAATTTTCGAAGGACTCAAGGC 58.770 43.478 0.00 0.00 0.00 4.35
367 368 1.892209 TTTTCGAAGGACTCAAGGCC 58.108 50.000 0.00 0.00 0.00 5.19
368 369 0.320421 TTTCGAAGGACTCAAGGCCG 60.320 55.000 0.00 0.00 0.00 6.13
369 370 1.183030 TTCGAAGGACTCAAGGCCGA 61.183 55.000 0.00 0.00 0.00 5.54
370 371 1.183030 TCGAAGGACTCAAGGCCGAA 61.183 55.000 0.00 0.00 0.00 4.30
371 372 1.014564 CGAAGGACTCAAGGCCGAAC 61.015 60.000 0.00 0.00 0.00 3.95
372 373 0.321996 GAAGGACTCAAGGCCGAACT 59.678 55.000 0.00 0.00 0.00 3.01
373 374 0.321996 AAGGACTCAAGGCCGAACTC 59.678 55.000 0.00 0.00 0.00 3.01
374 375 0.543174 AGGACTCAAGGCCGAACTCT 60.543 55.000 0.00 0.00 0.00 3.24
375 376 0.321996 GGACTCAAGGCCGAACTCTT 59.678 55.000 0.00 0.00 0.00 2.85
376 377 1.433534 GACTCAAGGCCGAACTCTTG 58.566 55.000 0.00 0.00 41.06 3.02
377 378 0.759346 ACTCAAGGCCGAACTCTTGT 59.241 50.000 0.00 0.00 40.67 3.16
378 379 1.968493 ACTCAAGGCCGAACTCTTGTA 59.032 47.619 0.00 0.00 40.67 2.41
379 380 2.567615 ACTCAAGGCCGAACTCTTGTAT 59.432 45.455 0.00 0.00 40.67 2.29
380 381 2.932614 CTCAAGGCCGAACTCTTGTATG 59.067 50.000 0.00 0.00 40.67 2.39
381 382 2.009774 CAAGGCCGAACTCTTGTATGG 58.990 52.381 0.00 0.00 36.54 2.74
382 383 0.107654 AGGCCGAACTCTTGTATGGC 60.108 55.000 0.00 0.00 42.42 4.40
383 384 0.107654 GGCCGAACTCTTGTATGGCT 60.108 55.000 0.69 0.00 42.62 4.75
384 385 1.679032 GGCCGAACTCTTGTATGGCTT 60.679 52.381 0.69 0.00 42.62 4.35
385 386 1.398390 GCCGAACTCTTGTATGGCTTG 59.602 52.381 0.00 0.00 40.96 4.01
386 387 2.009774 CCGAACTCTTGTATGGCTTGG 58.990 52.381 0.00 0.00 0.00 3.61
387 388 2.009774 CGAACTCTTGTATGGCTTGGG 58.990 52.381 0.00 0.00 0.00 4.12
388 389 2.615493 CGAACTCTTGTATGGCTTGGGT 60.615 50.000 0.00 0.00 0.00 4.51
389 390 2.789409 ACTCTTGTATGGCTTGGGTC 57.211 50.000 0.00 0.00 0.00 4.46
390 391 1.066143 ACTCTTGTATGGCTTGGGTCG 60.066 52.381 0.00 0.00 0.00 4.79
391 392 0.251916 TCTTGTATGGCTTGGGTCGG 59.748 55.000 0.00 0.00 0.00 4.79
392 393 0.748005 CTTGTATGGCTTGGGTCGGG 60.748 60.000 0.00 0.00 0.00 5.14
393 394 1.202099 TTGTATGGCTTGGGTCGGGA 61.202 55.000 0.00 0.00 0.00 5.14
394 395 1.153229 GTATGGCTTGGGTCGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
413 414 3.748021 CGGAGGTCTTTTTGAACGC 57.252 52.632 0.00 0.00 37.49 4.84
414 415 1.226746 CGGAGGTCTTTTTGAACGCT 58.773 50.000 0.00 0.00 37.49 5.07
415 416 1.069906 CGGAGGTCTTTTTGAACGCTG 60.070 52.381 0.00 0.00 37.49 5.18
416 417 1.947456 GGAGGTCTTTTTGAACGCTGT 59.053 47.619 0.00 0.00 37.49 4.40
417 418 2.357952 GGAGGTCTTTTTGAACGCTGTT 59.642 45.455 0.00 0.00 37.49 3.16
418 419 3.562557 GGAGGTCTTTTTGAACGCTGTTA 59.437 43.478 0.00 0.00 37.49 2.41
419 420 4.035909 GGAGGTCTTTTTGAACGCTGTTAA 59.964 41.667 0.00 0.00 37.49 2.01
420 421 5.169836 AGGTCTTTTTGAACGCTGTTAAG 57.830 39.130 0.00 0.00 37.49 1.85
421 422 4.638865 AGGTCTTTTTGAACGCTGTTAAGT 59.361 37.500 0.00 0.00 37.49 2.24
422 423 5.124936 AGGTCTTTTTGAACGCTGTTAAGTT 59.875 36.000 0.00 0.00 37.49 2.66
423 424 5.229260 GGTCTTTTTGAACGCTGTTAAGTTG 59.771 40.000 0.00 0.00 0.00 3.16
424 425 5.798434 GTCTTTTTGAACGCTGTTAAGTTGT 59.202 36.000 0.00 0.00 0.00 3.32
425 426 5.797934 TCTTTTTGAACGCTGTTAAGTTGTG 59.202 36.000 0.00 0.00 0.00 3.33
426 427 4.688511 TTTGAACGCTGTTAAGTTGTGT 57.311 36.364 0.00 0.00 0.00 3.72
427 428 4.688511 TTGAACGCTGTTAAGTTGTGTT 57.311 36.364 0.00 0.00 37.17 3.32
428 429 4.688511 TGAACGCTGTTAAGTTGTGTTT 57.311 36.364 0.00 0.00 35.03 2.83
429 430 5.049398 TGAACGCTGTTAAGTTGTGTTTT 57.951 34.783 0.00 0.00 35.03 2.43
430 431 4.854291 TGAACGCTGTTAAGTTGTGTTTTG 59.146 37.500 0.00 0.00 35.03 2.44
431 432 4.688511 ACGCTGTTAAGTTGTGTTTTGA 57.311 36.364 0.00 0.00 0.00 2.69
432 433 5.243426 ACGCTGTTAAGTTGTGTTTTGAT 57.757 34.783 0.00 0.00 0.00 2.57
433 434 5.646606 ACGCTGTTAAGTTGTGTTTTGATT 58.353 33.333 0.00 0.00 0.00 2.57
434 435 5.514914 ACGCTGTTAAGTTGTGTTTTGATTG 59.485 36.000 0.00 0.00 0.00 2.67
435 436 5.741510 CGCTGTTAAGTTGTGTTTTGATTGA 59.258 36.000 0.00 0.00 0.00 2.57
436 437 6.291060 CGCTGTTAAGTTGTGTTTTGATTGAC 60.291 38.462 0.00 0.00 0.00 3.18
437 438 6.751888 GCTGTTAAGTTGTGTTTTGATTGACT 59.248 34.615 0.00 0.00 0.00 3.41
438 439 7.913297 GCTGTTAAGTTGTGTTTTGATTGACTA 59.087 33.333 0.00 0.00 0.00 2.59
439 440 9.781834 CTGTTAAGTTGTGTTTTGATTGACTAA 57.218 29.630 0.00 0.00 0.00 2.24
445 446 9.950680 AGTTGTGTTTTGATTGACTAATACAAG 57.049 29.630 0.00 0.00 29.70 3.16
446 447 9.944663 GTTGTGTTTTGATTGACTAATACAAGA 57.055 29.630 0.00 0.00 29.70 3.02
455 456 9.098355 TGATTGACTAATACAAGAATTCTTCCG 57.902 33.333 17.91 10.50 33.11 4.30
456 457 6.903883 TGACTAATACAAGAATTCTTCCGC 57.096 37.500 17.91 3.25 33.11 5.54
457 458 6.403049 TGACTAATACAAGAATTCTTCCGCA 58.597 36.000 17.91 4.15 33.11 5.69
458 459 6.876789 TGACTAATACAAGAATTCTTCCGCAA 59.123 34.615 17.91 3.71 33.11 4.85
459 460 7.389330 TGACTAATACAAGAATTCTTCCGCAAA 59.611 33.333 17.91 2.23 33.11 3.68
460 461 8.106247 ACTAATACAAGAATTCTTCCGCAAAA 57.894 30.769 17.91 0.74 33.11 2.44
461 462 8.573035 ACTAATACAAGAATTCTTCCGCAAAAA 58.427 29.630 17.91 0.00 33.11 1.94
462 463 9.573133 CTAATACAAGAATTCTTCCGCAAAAAT 57.427 29.630 17.91 1.08 33.11 1.82
467 468 9.573133 ACAAGAATTCTTCCGCAAAAATATAAG 57.427 29.630 17.91 3.92 33.11 1.73
468 469 9.787532 CAAGAATTCTTCCGCAAAAATATAAGA 57.212 29.630 17.91 0.00 33.11 2.10
470 471 9.396022 AGAATTCTTCCGCAAAAATATAAGAGA 57.604 29.630 0.88 0.00 0.00 3.10
474 475 9.840427 TTCTTCCGCAAAAATATAAGAGAAAAG 57.160 29.630 0.00 0.00 0.00 2.27
475 476 9.226606 TCTTCCGCAAAAATATAAGAGAAAAGA 57.773 29.630 0.00 0.00 0.00 2.52
476 477 9.840427 CTTCCGCAAAAATATAAGAGAAAAGAA 57.160 29.630 0.00 0.00 0.00 2.52
521 522 0.398318 AGCTCAGTCCAACCTCCAAC 59.602 55.000 0.00 0.00 0.00 3.77
620 621 2.802247 GCCAAAACCAACAGAGAAATGC 59.198 45.455 0.00 0.00 0.00 3.56
647 648 8.786826 TGTTAATTTTCCGTCAAGAGTATCAT 57.213 30.769 0.00 0.00 37.82 2.45
648 649 9.226606 TGTTAATTTTCCGTCAAGAGTATCATT 57.773 29.630 0.00 0.00 37.82 2.57
673 679 2.125512 GGCCTTGTGCTCGATCGT 60.126 61.111 15.94 0.00 40.92 3.73
1497 1686 1.061570 GTCGGTGCTCGTACGTAGG 59.938 63.158 16.05 8.97 40.32 3.18
1498 1687 1.079197 TCGGTGCTCGTACGTAGGA 60.079 57.895 16.05 16.44 40.32 2.94
1499 1688 1.061570 CGGTGCTCGTACGTAGGAC 59.938 63.158 21.88 21.88 34.82 3.85
1500 1689 1.638388 CGGTGCTCGTACGTAGGACA 61.638 60.000 26.95 13.30 37.06 4.02
1501 1690 0.523072 GGTGCTCGTACGTAGGACAA 59.477 55.000 26.95 2.86 37.06 3.18
1502 1691 1.133790 GGTGCTCGTACGTAGGACAAT 59.866 52.381 26.95 0.00 37.06 2.71
1503 1692 2.416431 GGTGCTCGTACGTAGGACAATT 60.416 50.000 26.95 0.00 37.06 2.32
1504 1693 3.181497 GGTGCTCGTACGTAGGACAATTA 60.181 47.826 26.95 4.36 37.06 1.40
1505 1694 4.414852 GTGCTCGTACGTAGGACAATTAA 58.585 43.478 23.69 0.90 35.57 1.40
1506 1695 5.039333 GTGCTCGTACGTAGGACAATTAAT 58.961 41.667 23.69 0.00 35.57 1.40
1507 1696 5.517770 GTGCTCGTACGTAGGACAATTAATT 59.482 40.000 23.69 0.00 35.57 1.40
1508 1697 6.035327 GTGCTCGTACGTAGGACAATTAATTT 59.965 38.462 23.69 0.00 35.57 1.82
1509 1698 6.035220 TGCTCGTACGTAGGACAATTAATTTG 59.965 38.462 16.05 2.31 41.36 2.32
1510 1699 6.509039 GCTCGTACGTAGGACAATTAATTTGG 60.509 42.308 16.05 1.85 39.80 3.28
1511 1700 6.629128 TCGTACGTAGGACAATTAATTTGGA 58.371 36.000 16.05 0.00 39.80 3.53
1512 1701 7.095910 TCGTACGTAGGACAATTAATTTGGAA 58.904 34.615 16.05 0.00 39.80 3.53
1513 1702 7.063308 TCGTACGTAGGACAATTAATTTGGAAC 59.937 37.037 16.05 0.00 39.80 3.62
1514 1703 6.173191 ACGTAGGACAATTAATTTGGAACG 57.827 37.500 13.81 13.81 39.80 3.95
1515 1704 5.122711 ACGTAGGACAATTAATTTGGAACGG 59.877 40.000 17.19 2.78 39.80 4.44
1516 1705 5.352016 CGTAGGACAATTAATTTGGAACGGA 59.648 40.000 0.00 0.00 39.80 4.69
1517 1706 6.128227 CGTAGGACAATTAATTTGGAACGGAA 60.128 38.462 0.00 0.00 39.80 4.30
1518 1707 6.267496 AGGACAATTAATTTGGAACGGAAG 57.733 37.500 0.00 0.00 39.80 3.46
1519 1708 5.185056 AGGACAATTAATTTGGAACGGAAGG 59.815 40.000 0.00 0.00 39.80 3.46
1520 1709 5.184287 GGACAATTAATTTGGAACGGAAGGA 59.816 40.000 0.00 0.00 39.80 3.36
1521 1710 6.267496 ACAATTAATTTGGAACGGAAGGAG 57.733 37.500 0.00 0.00 39.80 3.69
1522 1711 5.773176 ACAATTAATTTGGAACGGAAGGAGT 59.227 36.000 0.00 0.00 39.80 3.85
1541 1730 3.879892 GAGTATCTTTTAGCCAGGCCTTG 59.120 47.826 8.22 0.00 0.00 3.61
1546 1735 0.112218 TTTAGCCAGGCCTTGCTTCA 59.888 50.000 33.97 19.53 39.00 3.02
1569 1758 8.529424 TCAGCTAAGCTTTTACTAGGTATGTA 57.471 34.615 3.20 0.00 36.40 2.29
1570 1759 8.630917 TCAGCTAAGCTTTTACTAGGTATGTAG 58.369 37.037 3.20 0.00 36.40 2.74
1571 1760 8.414778 CAGCTAAGCTTTTACTAGGTATGTAGT 58.585 37.037 3.20 0.00 36.40 2.73
1606 1795 6.261381 TGGGGTCGTCTGTATAATTATTTTGC 59.739 38.462 2.68 0.00 0.00 3.68
1743 1937 7.837863 TCAGTTCCCTGTTTACTGTAAGATAG 58.162 38.462 0.00 1.61 40.08 2.08
1930 2124 7.834181 ACTTGTGTCACTAATTAGGGCATATTT 59.166 33.333 16.73 2.10 0.00 1.40
1955 2149 6.931790 ATGATGATGCTATCTTAGAGGTGT 57.068 37.500 0.00 0.00 0.00 4.16
1962 2156 7.287696 TGATGCTATCTTAGAGGTGTCACATAA 59.712 37.037 5.12 0.46 0.00 1.90
1966 2160 9.331282 GCTATCTTAGAGGTGTCACATAAAATT 57.669 33.333 5.12 0.00 0.00 1.82
2069 2268 9.874215 GTATTATCACGTTTTTAGGAATAAGGC 57.126 33.333 0.00 0.00 0.00 4.35
2070 2269 8.747538 ATTATCACGTTTTTAGGAATAAGGCT 57.252 30.769 0.00 0.00 0.00 4.58
2071 2270 9.841295 ATTATCACGTTTTTAGGAATAAGGCTA 57.159 29.630 0.00 0.00 0.00 3.93
2072 2271 9.669887 TTATCACGTTTTTAGGAATAAGGCTAA 57.330 29.630 0.00 0.00 0.00 3.09
2073 2272 7.605410 TCACGTTTTTAGGAATAAGGCTAAG 57.395 36.000 0.00 0.00 0.00 2.18
2074 2273 7.388437 TCACGTTTTTAGGAATAAGGCTAAGA 58.612 34.615 0.00 0.00 0.00 2.10
2075 2274 7.548075 TCACGTTTTTAGGAATAAGGCTAAGAG 59.452 37.037 0.00 0.00 0.00 2.85
2076 2275 7.548075 CACGTTTTTAGGAATAAGGCTAAGAGA 59.452 37.037 0.00 0.00 0.00 3.10
2077 2276 8.265764 ACGTTTTTAGGAATAAGGCTAAGAGAT 58.734 33.333 0.00 0.00 0.00 2.75
2078 2277 9.760077 CGTTTTTAGGAATAAGGCTAAGAGATA 57.240 33.333 0.00 0.00 0.00 1.98
2217 5801 2.993264 GACTCGTTGGACCCGGGA 60.993 66.667 32.02 0.04 0.00 5.14
2228 5812 0.034863 GACCCGGGAAACATTGGCTA 60.035 55.000 32.02 0.00 0.00 3.93
2244 5828 2.031870 GGCTAGTTTATTTGCCCTGGG 58.968 52.381 8.86 8.86 39.49 4.45
2254 5838 8.661345 AGTTTATTTGCCCTGGGTTTATTTTTA 58.339 29.630 15.56 0.00 0.00 1.52
2277 5861 5.720202 AGTTTGTTTTGGAGTTTCAGTTCC 58.280 37.500 0.00 0.00 0.00 3.62
2278 5862 4.364415 TTGTTTTGGAGTTTCAGTTCCG 57.636 40.909 0.00 0.00 36.22 4.30
2279 5863 3.611970 TGTTTTGGAGTTTCAGTTCCGA 58.388 40.909 0.00 0.00 36.22 4.55
2287 5878 1.133363 TTTCAGTTCCGACCCTCCAA 58.867 50.000 0.00 0.00 0.00 3.53
2306 5897 1.968540 GCCTTGGAGTCACCTGCAC 60.969 63.158 0.00 0.00 38.93 4.57
2319 5910 3.353114 CTGCACATTCCGCACGACG 62.353 63.158 0.00 0.00 43.15 5.12
2353 5965 2.569059 CATCTTTCGAGCATCCACCAT 58.431 47.619 0.00 0.00 0.00 3.55
2374 5986 3.228453 TCTGGACTATCGGGAATGGTAC 58.772 50.000 0.00 0.00 30.37 3.34
2387 5999 4.402474 GGGAATGGTACTAGCTGCAAATTT 59.598 41.667 1.02 0.00 0.00 1.82
2390 6002 6.350110 GGAATGGTACTAGCTGCAAATTTTGA 60.350 38.462 13.26 0.00 0.00 2.69
2394 6006 3.900941 ACTAGCTGCAAATTTTGAACCG 58.099 40.909 13.26 0.00 0.00 4.44
2431 6043 0.935898 CGATCAGTGGCTGAGATTGC 59.064 55.000 5.09 0.00 44.08 3.56
2442 6054 2.354259 CTGAGATTGCACCTCAAGTCC 58.646 52.381 16.11 0.00 39.83 3.85
2452 6064 1.902508 ACCTCAAGTCCACGTGATGAT 59.097 47.619 19.30 0.00 34.10 2.45
2458 6070 1.115467 GTCCACGTGATGATCCCTCT 58.885 55.000 19.30 0.00 0.00 3.69
2459 6071 2.091830 AGTCCACGTGATGATCCCTCTA 60.092 50.000 19.30 0.00 0.00 2.43
2460 6072 2.693591 GTCCACGTGATGATCCCTCTAA 59.306 50.000 19.30 0.00 0.00 2.10
2461 6073 3.132289 GTCCACGTGATGATCCCTCTAAA 59.868 47.826 19.30 0.00 0.00 1.85
2462 6074 3.772572 TCCACGTGATGATCCCTCTAAAA 59.227 43.478 19.30 0.00 0.00 1.52
2463 6075 4.224147 TCCACGTGATGATCCCTCTAAAAA 59.776 41.667 19.30 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.840288 TGGTGCTAGTGGGTGGACAT 60.840 55.000 0.00 0.00 0.00 3.06
1 2 1.460497 TGGTGCTAGTGGGTGGACA 60.460 57.895 0.00 0.00 0.00 4.02
2 3 1.003718 GTGGTGCTAGTGGGTGGAC 60.004 63.158 0.00 0.00 0.00 4.02
3 4 2.221299 GGTGGTGCTAGTGGGTGGA 61.221 63.158 0.00 0.00 0.00 4.02
4 5 2.185310 GAGGTGGTGCTAGTGGGTGG 62.185 65.000 0.00 0.00 0.00 4.61
5 6 1.296715 GAGGTGGTGCTAGTGGGTG 59.703 63.158 0.00 0.00 0.00 4.61
6 7 1.918800 GGAGGTGGTGCTAGTGGGT 60.919 63.158 0.00 0.00 0.00 4.51
7 8 2.670148 GGGAGGTGGTGCTAGTGGG 61.670 68.421 0.00 0.00 0.00 4.61
8 9 1.201429 AAGGGAGGTGGTGCTAGTGG 61.201 60.000 0.00 0.00 0.00 4.00
9 10 0.693049 AAAGGGAGGTGGTGCTAGTG 59.307 55.000 0.00 0.00 0.00 2.74
10 11 1.446016 AAAAGGGAGGTGGTGCTAGT 58.554 50.000 0.00 0.00 0.00 2.57
11 12 2.162681 CAAAAAGGGAGGTGGTGCTAG 58.837 52.381 0.00 0.00 0.00 3.42
12 13 1.497286 ACAAAAAGGGAGGTGGTGCTA 59.503 47.619 0.00 0.00 0.00 3.49
13 14 0.261696 ACAAAAAGGGAGGTGGTGCT 59.738 50.000 0.00 0.00 0.00 4.40
14 15 0.673985 GACAAAAAGGGAGGTGGTGC 59.326 55.000 0.00 0.00 0.00 5.01
15 16 1.956477 CTGACAAAAAGGGAGGTGGTG 59.044 52.381 0.00 0.00 0.00 4.17
16 17 1.850345 TCTGACAAAAAGGGAGGTGGT 59.150 47.619 0.00 0.00 0.00 4.16
17 18 2.158608 AGTCTGACAAAAAGGGAGGTGG 60.159 50.000 10.88 0.00 0.00 4.61
18 19 3.142174 GAGTCTGACAAAAAGGGAGGTG 58.858 50.000 10.88 0.00 0.00 4.00
19 20 3.049344 AGAGTCTGACAAAAAGGGAGGT 58.951 45.455 10.88 0.00 0.00 3.85
20 21 3.778954 AGAGTCTGACAAAAAGGGAGG 57.221 47.619 10.88 0.00 0.00 4.30
21 22 7.360438 CGAAAATAGAGTCTGACAAAAAGGGAG 60.360 40.741 10.88 0.00 0.00 4.30
22 23 6.426937 CGAAAATAGAGTCTGACAAAAAGGGA 59.573 38.462 10.88 0.00 0.00 4.20
23 24 6.426937 TCGAAAATAGAGTCTGACAAAAAGGG 59.573 38.462 10.88 0.00 0.00 3.95
24 25 7.042051 TGTCGAAAATAGAGTCTGACAAAAAGG 60.042 37.037 10.88 0.00 32.48 3.11
25 26 7.794349 GTGTCGAAAATAGAGTCTGACAAAAAG 59.206 37.037 10.88 0.00 36.72 2.27
26 27 7.279090 TGTGTCGAAAATAGAGTCTGACAAAAA 59.721 33.333 10.88 0.00 36.72 1.94
27 28 6.759356 TGTGTCGAAAATAGAGTCTGACAAAA 59.241 34.615 10.88 1.19 36.72 2.44
28 29 6.277605 TGTGTCGAAAATAGAGTCTGACAAA 58.722 36.000 10.88 3.26 36.72 2.83
29 30 5.838529 TGTGTCGAAAATAGAGTCTGACAA 58.161 37.500 10.88 0.00 36.72 3.18
30 31 5.447624 TGTGTCGAAAATAGAGTCTGACA 57.552 39.130 10.88 3.76 32.93 3.58
31 32 5.220303 GCATGTGTCGAAAATAGAGTCTGAC 60.220 44.000 1.86 0.00 0.00 3.51
32 33 4.864806 GCATGTGTCGAAAATAGAGTCTGA 59.135 41.667 1.86 0.00 0.00 3.27
33 34 4.867047 AGCATGTGTCGAAAATAGAGTCTG 59.133 41.667 1.86 0.00 0.00 3.51
34 35 4.867047 CAGCATGTGTCGAAAATAGAGTCT 59.133 41.667 0.00 0.00 0.00 3.24
35 36 4.033358 CCAGCATGTGTCGAAAATAGAGTC 59.967 45.833 0.00 0.00 0.00 3.36
36 37 3.935203 CCAGCATGTGTCGAAAATAGAGT 59.065 43.478 0.00 0.00 0.00 3.24
37 38 3.935203 ACCAGCATGTGTCGAAAATAGAG 59.065 43.478 0.00 0.00 0.00 2.43
38 39 3.937814 ACCAGCATGTGTCGAAAATAGA 58.062 40.909 0.00 0.00 0.00 1.98
39 40 4.651994 GAACCAGCATGTGTCGAAAATAG 58.348 43.478 0.00 0.00 0.00 1.73
40 41 3.124466 CGAACCAGCATGTGTCGAAAATA 59.876 43.478 0.00 0.00 0.00 1.40
41 42 2.095768 CGAACCAGCATGTGTCGAAAAT 60.096 45.455 0.00 0.00 0.00 1.82
42 43 1.262950 CGAACCAGCATGTGTCGAAAA 59.737 47.619 0.00 0.00 0.00 2.29
43 44 0.865111 CGAACCAGCATGTGTCGAAA 59.135 50.000 0.00 0.00 0.00 3.46
44 45 0.249699 ACGAACCAGCATGTGTCGAA 60.250 50.000 12.04 0.00 0.00 3.71
45 46 0.666274 GACGAACCAGCATGTGTCGA 60.666 55.000 12.04 0.00 0.00 4.20
46 47 1.626654 GGACGAACCAGCATGTGTCG 61.627 60.000 0.00 1.35 38.79 4.35
47 48 0.602638 TGGACGAACCAGCATGTGTC 60.603 55.000 0.00 0.00 44.64 3.67
48 49 1.449782 TGGACGAACCAGCATGTGT 59.550 52.632 0.00 0.00 44.64 3.72
49 50 4.377370 TGGACGAACCAGCATGTG 57.623 55.556 0.00 0.00 44.64 3.21
57 58 3.393800 CATGTATCTGGATGGACGAACC 58.606 50.000 0.00 0.00 39.54 3.62
58 59 2.802816 GCATGTATCTGGATGGACGAAC 59.197 50.000 0.00 0.00 0.00 3.95
59 60 2.433970 TGCATGTATCTGGATGGACGAA 59.566 45.455 0.00 0.00 0.00 3.85
60 61 2.036346 CTGCATGTATCTGGATGGACGA 59.964 50.000 0.00 0.00 0.00 4.20
61 62 2.036346 TCTGCATGTATCTGGATGGACG 59.964 50.000 0.00 0.00 0.00 4.79
62 63 3.181462 TGTCTGCATGTATCTGGATGGAC 60.181 47.826 0.00 0.00 0.00 4.02
63 64 3.040477 TGTCTGCATGTATCTGGATGGA 58.960 45.455 0.00 0.00 0.00 3.41
64 65 3.480505 TGTCTGCATGTATCTGGATGG 57.519 47.619 0.00 0.00 0.00 3.51
65 66 4.895961 AGATGTCTGCATGTATCTGGATG 58.104 43.478 6.08 0.00 35.07 3.51
66 67 5.563876 AAGATGTCTGCATGTATCTGGAT 57.436 39.130 7.29 0.00 35.07 3.41
67 68 5.363562 AAAGATGTCTGCATGTATCTGGA 57.636 39.130 7.29 0.00 35.07 3.86
68 69 6.446781 AAAAAGATGTCTGCATGTATCTGG 57.553 37.500 7.29 0.00 35.07 3.86
88 89 3.755965 ATACATCATCGCACGCAAAAA 57.244 38.095 0.00 0.00 0.00 1.94
89 90 3.424487 CAATACATCATCGCACGCAAAA 58.576 40.909 0.00 0.00 0.00 2.44
90 91 2.223226 CCAATACATCATCGCACGCAAA 60.223 45.455 0.00 0.00 0.00 3.68
91 92 1.330213 CCAATACATCATCGCACGCAA 59.670 47.619 0.00 0.00 0.00 4.85
92 93 0.936600 CCAATACATCATCGCACGCA 59.063 50.000 0.00 0.00 0.00 5.24
93 94 1.193203 CTCCAATACATCATCGCACGC 59.807 52.381 0.00 0.00 0.00 5.34
94 95 1.794701 CCTCCAATACATCATCGCACG 59.205 52.381 0.00 0.00 0.00 5.34
95 96 1.532868 GCCTCCAATACATCATCGCAC 59.467 52.381 0.00 0.00 0.00 5.34
96 97 1.417517 AGCCTCCAATACATCATCGCA 59.582 47.619 0.00 0.00 0.00 5.10
97 98 1.802960 CAGCCTCCAATACATCATCGC 59.197 52.381 0.00 0.00 0.00 4.58
98 99 3.391506 TCAGCCTCCAATACATCATCG 57.608 47.619 0.00 0.00 0.00 3.84
99 100 6.002704 AGATTTCAGCCTCCAATACATCATC 58.997 40.000 0.00 0.00 0.00 2.92
100 101 5.950023 AGATTTCAGCCTCCAATACATCAT 58.050 37.500 0.00 0.00 0.00 2.45
101 102 5.378230 AGATTTCAGCCTCCAATACATCA 57.622 39.130 0.00 0.00 0.00 3.07
102 103 7.148507 CGATAAGATTTCAGCCTCCAATACATC 60.149 40.741 0.00 0.00 0.00 3.06
103 104 6.652481 CGATAAGATTTCAGCCTCCAATACAT 59.348 38.462 0.00 0.00 0.00 2.29
104 105 5.991606 CGATAAGATTTCAGCCTCCAATACA 59.008 40.000 0.00 0.00 0.00 2.29
105 106 6.223852 TCGATAAGATTTCAGCCTCCAATAC 58.776 40.000 0.00 0.00 0.00 1.89
106 107 6.419484 TCGATAAGATTTCAGCCTCCAATA 57.581 37.500 0.00 0.00 0.00 1.90
107 108 5.296151 TCGATAAGATTTCAGCCTCCAAT 57.704 39.130 0.00 0.00 0.00 3.16
108 109 4.753516 TCGATAAGATTTCAGCCTCCAA 57.246 40.909 0.00 0.00 0.00 3.53
109 110 4.262635 GGATCGATAAGATTTCAGCCTCCA 60.263 45.833 0.00 0.00 40.26 3.86
110 111 4.249661 GGATCGATAAGATTTCAGCCTCC 58.750 47.826 0.00 0.00 40.26 4.30
111 112 3.923461 CGGATCGATAAGATTTCAGCCTC 59.077 47.826 0.00 0.00 40.26 4.70
112 113 3.574396 TCGGATCGATAAGATTTCAGCCT 59.426 43.478 0.00 0.00 40.26 4.58
113 114 3.675698 GTCGGATCGATAAGATTTCAGCC 59.324 47.826 0.00 0.00 40.26 4.85
114 115 4.299155 TGTCGGATCGATAAGATTTCAGC 58.701 43.478 0.00 0.00 40.26 4.26
123 124 3.021695 ACAGTCCTTGTCGGATCGATAA 58.978 45.455 0.00 0.00 45.44 1.75
124 125 2.651455 ACAGTCCTTGTCGGATCGATA 58.349 47.619 0.00 0.00 45.44 2.92
125 126 1.475403 ACAGTCCTTGTCGGATCGAT 58.525 50.000 0.00 0.00 45.44 3.59
126 127 1.067846 CAACAGTCCTTGTCGGATCGA 60.068 52.381 0.00 0.00 45.44 3.59
127 128 1.350193 CAACAGTCCTTGTCGGATCG 58.650 55.000 0.00 0.00 45.44 3.69
128 129 1.079503 GCAACAGTCCTTGTCGGATC 58.920 55.000 0.00 0.00 45.44 3.36
129 130 0.687354 AGCAACAGTCCTTGTCGGAT 59.313 50.000 0.00 0.00 45.44 4.18
130 131 1.272490 CTAGCAACAGTCCTTGTCGGA 59.728 52.381 0.00 0.00 39.73 4.55
131 132 1.714794 CTAGCAACAGTCCTTGTCGG 58.285 55.000 0.00 0.00 39.73 4.79
132 133 1.071605 GCTAGCAACAGTCCTTGTCG 58.928 55.000 10.63 0.00 39.73 4.35
133 134 2.028567 AGAGCTAGCAACAGTCCTTGTC 60.029 50.000 18.83 0.50 39.73 3.18
134 135 1.974236 AGAGCTAGCAACAGTCCTTGT 59.026 47.619 18.83 0.00 43.45 3.16
135 136 2.758736 AGAGCTAGCAACAGTCCTTG 57.241 50.000 18.83 0.00 0.00 3.61
136 137 3.194542 CACTAGAGCTAGCAACAGTCCTT 59.805 47.826 18.83 0.00 36.66 3.36
137 138 2.757868 CACTAGAGCTAGCAACAGTCCT 59.242 50.000 18.83 4.59 36.66 3.85
138 139 2.755655 TCACTAGAGCTAGCAACAGTCC 59.244 50.000 18.83 0.00 36.66 3.85
139 140 4.420168 CTTCACTAGAGCTAGCAACAGTC 58.580 47.826 18.83 5.05 36.66 3.51
140 141 3.367910 GCTTCACTAGAGCTAGCAACAGT 60.368 47.826 18.83 12.94 36.66 3.55
141 142 3.186119 GCTTCACTAGAGCTAGCAACAG 58.814 50.000 18.83 12.28 36.66 3.16
142 143 2.562738 TGCTTCACTAGAGCTAGCAACA 59.437 45.455 18.83 0.00 38.76 3.33
143 144 3.238108 TGCTTCACTAGAGCTAGCAAC 57.762 47.619 18.83 10.61 38.76 4.17
144 145 3.961480 TTGCTTCACTAGAGCTAGCAA 57.039 42.857 18.83 18.39 46.23 3.91
145 146 3.703556 AGATTGCTTCACTAGAGCTAGCA 59.296 43.478 18.83 10.95 39.85 3.49
146 147 4.320608 AGATTGCTTCACTAGAGCTAGC 57.679 45.455 6.62 6.62 36.66 3.42
147 148 5.300539 TGGTAGATTGCTTCACTAGAGCTAG 59.699 44.000 0.00 3.06 39.04 3.42
148 149 5.201243 TGGTAGATTGCTTCACTAGAGCTA 58.799 41.667 0.00 0.00 0.00 3.32
149 150 4.026744 TGGTAGATTGCTTCACTAGAGCT 58.973 43.478 0.00 0.00 0.00 4.09
150 151 4.392921 TGGTAGATTGCTTCACTAGAGC 57.607 45.455 0.00 0.00 0.00 4.09
151 152 7.044181 TCAATTGGTAGATTGCTTCACTAGAG 58.956 38.462 5.42 0.00 37.03 2.43
152 153 6.946340 TCAATTGGTAGATTGCTTCACTAGA 58.054 36.000 5.42 0.00 37.03 2.43
153 154 7.281774 ACATCAATTGGTAGATTGCTTCACTAG 59.718 37.037 5.42 0.00 37.03 2.57
154 155 7.112122 ACATCAATTGGTAGATTGCTTCACTA 58.888 34.615 5.42 0.00 37.03 2.74
155 156 5.948162 ACATCAATTGGTAGATTGCTTCACT 59.052 36.000 5.42 0.00 37.03 3.41
156 157 6.199937 ACATCAATTGGTAGATTGCTTCAC 57.800 37.500 5.42 0.00 37.03 3.18
157 158 6.433716 TCAACATCAATTGGTAGATTGCTTCA 59.566 34.615 5.42 0.00 37.03 3.02
158 159 6.855836 TCAACATCAATTGGTAGATTGCTTC 58.144 36.000 5.42 0.00 37.03 3.86
159 160 6.839124 TCAACATCAATTGGTAGATTGCTT 57.161 33.333 5.42 0.00 37.03 3.91
160 161 6.839124 TTCAACATCAATTGGTAGATTGCT 57.161 33.333 5.42 0.00 37.03 3.91
161 162 6.035327 GCTTTCAACATCAATTGGTAGATTGC 59.965 38.462 5.42 2.28 37.03 3.56
162 163 6.252015 CGCTTTCAACATCAATTGGTAGATTG 59.748 38.462 5.42 4.58 38.16 2.67
163 164 6.150976 TCGCTTTCAACATCAATTGGTAGATT 59.849 34.615 5.42 0.00 0.00 2.40
164 165 5.647658 TCGCTTTCAACATCAATTGGTAGAT 59.352 36.000 5.42 0.00 0.00 1.98
165 166 5.000591 TCGCTTTCAACATCAATTGGTAGA 58.999 37.500 5.42 0.00 0.00 2.59
166 167 5.088739 GTCGCTTTCAACATCAATTGGTAG 58.911 41.667 5.42 0.00 0.00 3.18
167 168 4.517075 TGTCGCTTTCAACATCAATTGGTA 59.483 37.500 5.42 0.00 0.00 3.25
168 169 3.317711 TGTCGCTTTCAACATCAATTGGT 59.682 39.130 5.42 0.00 0.00 3.67
169 170 3.899734 TGTCGCTTTCAACATCAATTGG 58.100 40.909 5.42 0.00 0.00 3.16
170 171 4.539870 ACTGTCGCTTTCAACATCAATTG 58.460 39.130 0.00 0.00 0.00 2.32
171 172 4.836125 ACTGTCGCTTTCAACATCAATT 57.164 36.364 0.00 0.00 0.00 2.32
172 173 4.836125 AACTGTCGCTTTCAACATCAAT 57.164 36.364 0.00 0.00 0.00 2.57
173 174 4.095632 TCAAACTGTCGCTTTCAACATCAA 59.904 37.500 0.00 0.00 0.00 2.57
174 175 3.625313 TCAAACTGTCGCTTTCAACATCA 59.375 39.130 0.00 0.00 0.00 3.07
175 176 4.209452 TCAAACTGTCGCTTTCAACATC 57.791 40.909 0.00 0.00 0.00 3.06
176 177 4.498009 CCTTCAAACTGTCGCTTTCAACAT 60.498 41.667 0.00 0.00 0.00 2.71
177 178 3.181501 CCTTCAAACTGTCGCTTTCAACA 60.182 43.478 0.00 0.00 0.00 3.33
178 179 3.363178 CCTTCAAACTGTCGCTTTCAAC 58.637 45.455 0.00 0.00 0.00 3.18
179 180 2.223479 GCCTTCAAACTGTCGCTTTCAA 60.223 45.455 0.00 0.00 0.00 2.69
180 181 1.333619 GCCTTCAAACTGTCGCTTTCA 59.666 47.619 0.00 0.00 0.00 2.69
181 182 1.333619 TGCCTTCAAACTGTCGCTTTC 59.666 47.619 0.00 0.00 0.00 2.62
182 183 1.334869 CTGCCTTCAAACTGTCGCTTT 59.665 47.619 0.00 0.00 0.00 3.51
183 184 0.947244 CTGCCTTCAAACTGTCGCTT 59.053 50.000 0.00 0.00 0.00 4.68
184 185 0.179045 ACTGCCTTCAAACTGTCGCT 60.179 50.000 0.00 0.00 0.00 4.93
185 186 0.663153 AACTGCCTTCAAACTGTCGC 59.337 50.000 0.00 0.00 0.00 5.19
186 187 3.311322 TGTTAACTGCCTTCAAACTGTCG 59.689 43.478 7.22 0.00 0.00 4.35
187 188 4.893424 TGTTAACTGCCTTCAAACTGTC 57.107 40.909 7.22 0.00 0.00 3.51
188 189 4.037923 CCATGTTAACTGCCTTCAAACTGT 59.962 41.667 7.22 0.00 0.00 3.55
189 190 4.037923 ACCATGTTAACTGCCTTCAAACTG 59.962 41.667 7.22 0.00 0.00 3.16
190 191 4.037923 CACCATGTTAACTGCCTTCAAACT 59.962 41.667 7.22 0.00 0.00 2.66
191 192 4.037446 TCACCATGTTAACTGCCTTCAAAC 59.963 41.667 7.22 0.00 0.00 2.93
192 193 4.211125 TCACCATGTTAACTGCCTTCAAA 58.789 39.130 7.22 0.00 0.00 2.69
193 194 3.826524 TCACCATGTTAACTGCCTTCAA 58.173 40.909 7.22 0.00 0.00 2.69
194 195 3.500448 TCACCATGTTAACTGCCTTCA 57.500 42.857 7.22 0.00 0.00 3.02
195 196 4.846779 TTTCACCATGTTAACTGCCTTC 57.153 40.909 7.22 0.00 0.00 3.46
196 197 5.806654 ATTTTCACCATGTTAACTGCCTT 57.193 34.783 7.22 0.00 0.00 4.35
197 198 5.806654 AATTTTCACCATGTTAACTGCCT 57.193 34.783 7.22 0.00 0.00 4.75
198 199 6.586082 CACTAATTTTCACCATGTTAACTGCC 59.414 38.462 7.22 0.00 0.00 4.85
199 200 6.586082 CCACTAATTTTCACCATGTTAACTGC 59.414 38.462 7.22 0.00 0.00 4.40
200 201 7.881142 TCCACTAATTTTCACCATGTTAACTG 58.119 34.615 7.22 2.92 0.00 3.16
201 202 7.942341 TCTCCACTAATTTTCACCATGTTAACT 59.058 33.333 7.22 0.00 0.00 2.24
202 203 8.106247 TCTCCACTAATTTTCACCATGTTAAC 57.894 34.615 0.00 0.00 0.00 2.01
203 204 8.877864 ATCTCCACTAATTTTCACCATGTTAA 57.122 30.769 0.00 0.00 0.00 2.01
204 205 9.391006 GTATCTCCACTAATTTTCACCATGTTA 57.609 33.333 0.00 0.00 0.00 2.41
205 206 7.888021 TGTATCTCCACTAATTTTCACCATGTT 59.112 33.333 0.00 0.00 0.00 2.71
206 207 7.402054 TGTATCTCCACTAATTTTCACCATGT 58.598 34.615 0.00 0.00 0.00 3.21
207 208 7.864108 TGTATCTCCACTAATTTTCACCATG 57.136 36.000 0.00 0.00 0.00 3.66
208 209 8.739972 GTTTGTATCTCCACTAATTTTCACCAT 58.260 33.333 0.00 0.00 0.00 3.55
209 210 7.721842 TGTTTGTATCTCCACTAATTTTCACCA 59.278 33.333 0.00 0.00 0.00 4.17
210 211 8.106247 TGTTTGTATCTCCACTAATTTTCACC 57.894 34.615 0.00 0.00 0.00 4.02
211 212 8.999431 TCTGTTTGTATCTCCACTAATTTTCAC 58.001 33.333 0.00 0.00 0.00 3.18
212 213 9.739276 ATCTGTTTGTATCTCCACTAATTTTCA 57.261 29.630 0.00 0.00 0.00 2.69
214 215 9.739276 TGATCTGTTTGTATCTCCACTAATTTT 57.261 29.630 0.00 0.00 0.00 1.82
215 216 9.739276 TTGATCTGTTTGTATCTCCACTAATTT 57.261 29.630 0.00 0.00 0.00 1.82
216 217 9.739276 TTTGATCTGTTTGTATCTCCACTAATT 57.261 29.630 0.00 0.00 0.00 1.40
217 218 9.739276 TTTTGATCTGTTTGTATCTCCACTAAT 57.261 29.630 0.00 0.00 0.00 1.73
218 219 9.739276 ATTTTGATCTGTTTGTATCTCCACTAA 57.261 29.630 0.00 0.00 0.00 2.24
220 221 9.167311 GTATTTTGATCTGTTTGTATCTCCACT 57.833 33.333 0.00 0.00 0.00 4.00
221 222 8.946085 TGTATTTTGATCTGTTTGTATCTCCAC 58.054 33.333 0.00 0.00 0.00 4.02
222 223 9.685276 ATGTATTTTGATCTGTTTGTATCTCCA 57.315 29.630 0.00 0.00 0.00 3.86
236 237 9.214953 CGCTAACAAGAAAGATGTATTTTGATC 57.785 33.333 0.00 0.00 0.00 2.92
237 238 8.946085 TCGCTAACAAGAAAGATGTATTTTGAT 58.054 29.630 0.00 0.00 0.00 2.57
238 239 8.317891 TCGCTAACAAGAAAGATGTATTTTGA 57.682 30.769 0.00 0.00 0.00 2.69
239 240 8.948853 TTCGCTAACAAGAAAGATGTATTTTG 57.051 30.769 0.00 0.00 0.00 2.44
245 246 9.959749 TTTTAATTTCGCTAACAAGAAAGATGT 57.040 25.926 0.00 0.00 39.36 3.06
255 256 9.956797 GTCGTACTATTTTTAATTTCGCTAACA 57.043 29.630 0.00 0.00 0.00 2.41
256 257 9.413611 GGTCGTACTATTTTTAATTTCGCTAAC 57.586 33.333 0.00 0.00 0.00 2.34
257 258 8.320295 CGGTCGTACTATTTTTAATTTCGCTAA 58.680 33.333 0.00 0.00 0.00 3.09
258 259 7.700234 TCGGTCGTACTATTTTTAATTTCGCTA 59.300 33.333 0.00 0.00 0.00 4.26
259 260 6.531240 TCGGTCGTACTATTTTTAATTTCGCT 59.469 34.615 0.00 0.00 0.00 4.93
260 261 6.695245 TCGGTCGTACTATTTTTAATTTCGC 58.305 36.000 0.00 0.00 0.00 4.70
261 262 7.365442 CGTTCGGTCGTACTATTTTTAATTTCG 59.635 37.037 0.00 0.00 0.00 3.46
262 263 8.162245 ACGTTCGGTCGTACTATTTTTAATTTC 58.838 33.333 4.24 0.00 42.35 2.17
263 264 8.017587 ACGTTCGGTCGTACTATTTTTAATTT 57.982 30.769 4.24 0.00 42.35 1.82
264 265 7.581011 ACGTTCGGTCGTACTATTTTTAATT 57.419 32.000 4.24 0.00 42.35 1.40
265 266 7.044052 GCTACGTTCGGTCGTACTATTTTTAAT 60.044 37.037 0.00 0.00 43.80 1.40
266 267 6.250527 GCTACGTTCGGTCGTACTATTTTTAA 59.749 38.462 0.00 0.00 43.80 1.52
267 268 5.737290 GCTACGTTCGGTCGTACTATTTTTA 59.263 40.000 0.00 0.00 43.80 1.52
268 269 4.558860 GCTACGTTCGGTCGTACTATTTTT 59.441 41.667 0.00 0.00 43.80 1.94
269 270 4.098416 GCTACGTTCGGTCGTACTATTTT 58.902 43.478 0.00 0.00 43.80 1.82
270 271 3.375299 AGCTACGTTCGGTCGTACTATTT 59.625 43.478 0.00 0.00 43.80 1.40
271 272 2.939103 AGCTACGTTCGGTCGTACTATT 59.061 45.455 0.00 0.00 43.80 1.73
272 273 2.541762 GAGCTACGTTCGGTCGTACTAT 59.458 50.000 0.00 0.24 43.80 2.12
273 274 1.927174 GAGCTACGTTCGGTCGTACTA 59.073 52.381 0.00 0.00 43.80 1.82
274 275 0.723981 GAGCTACGTTCGGTCGTACT 59.276 55.000 0.00 10.16 43.80 2.73
275 276 0.723981 AGAGCTACGTTCGGTCGTAC 59.276 55.000 0.00 6.78 43.80 3.67
276 277 1.129251 CAAGAGCTACGTTCGGTCGTA 59.871 52.381 0.00 11.12 43.80 3.43
277 278 0.109873 CAAGAGCTACGTTCGGTCGT 60.110 55.000 0.00 10.13 45.97 4.34
278 279 0.109873 ACAAGAGCTACGTTCGGTCG 60.110 55.000 0.00 0.00 34.29 4.79
279 280 2.907910 TACAAGAGCTACGTTCGGTC 57.092 50.000 0.00 0.27 0.00 4.79
280 281 3.863142 AATACAAGAGCTACGTTCGGT 57.137 42.857 0.00 0.00 0.00 4.69
281 282 4.918037 AGTAATACAAGAGCTACGTTCGG 58.082 43.478 0.00 0.00 0.00 4.30
282 283 5.566623 TGAGTAATACAAGAGCTACGTTCG 58.433 41.667 0.00 0.00 0.00 3.95
283 284 9.680315 AATATGAGTAATACAAGAGCTACGTTC 57.320 33.333 0.00 0.00 0.00 3.95
285 286 9.464714 CAAATATGAGTAATACAAGAGCTACGT 57.535 33.333 0.00 0.00 0.00 3.57
286 287 9.678941 TCAAATATGAGTAATACAAGAGCTACG 57.321 33.333 0.00 0.00 0.00 3.51
326 327 9.949174 GAAAATTTGCCAAAACATGACTTAAAT 57.051 25.926 0.00 0.00 0.00 1.40
327 328 8.119226 CGAAAATTTGCCAAAACATGACTTAAA 58.881 29.630 0.00 0.00 0.00 1.52
328 329 7.492669 TCGAAAATTTGCCAAAACATGACTTAA 59.507 29.630 0.00 0.00 0.00 1.85
329 330 6.980978 TCGAAAATTTGCCAAAACATGACTTA 59.019 30.769 0.00 0.00 0.00 2.24
330 331 5.814705 TCGAAAATTTGCCAAAACATGACTT 59.185 32.000 0.00 0.00 0.00 3.01
331 332 5.355596 TCGAAAATTTGCCAAAACATGACT 58.644 33.333 0.00 0.00 0.00 3.41
332 333 5.649602 TCGAAAATTTGCCAAAACATGAC 57.350 34.783 0.00 0.00 0.00 3.06
333 334 5.236047 CCTTCGAAAATTTGCCAAAACATGA 59.764 36.000 0.00 0.00 0.00 3.07
334 335 5.236047 TCCTTCGAAAATTTGCCAAAACATG 59.764 36.000 0.00 0.00 0.00 3.21
335 336 5.236263 GTCCTTCGAAAATTTGCCAAAACAT 59.764 36.000 0.00 0.00 0.00 2.71
336 337 4.568760 GTCCTTCGAAAATTTGCCAAAACA 59.431 37.500 0.00 0.00 0.00 2.83
337 338 4.808895 AGTCCTTCGAAAATTTGCCAAAAC 59.191 37.500 0.00 0.00 0.00 2.43
338 339 5.017294 AGTCCTTCGAAAATTTGCCAAAA 57.983 34.783 0.00 0.00 0.00 2.44
339 340 4.098654 TGAGTCCTTCGAAAATTTGCCAAA 59.901 37.500 0.00 0.00 0.00 3.28
340 341 3.634448 TGAGTCCTTCGAAAATTTGCCAA 59.366 39.130 0.00 0.00 0.00 4.52
341 342 3.218453 TGAGTCCTTCGAAAATTTGCCA 58.782 40.909 0.00 0.00 0.00 4.92
342 343 3.915437 TGAGTCCTTCGAAAATTTGCC 57.085 42.857 0.00 0.00 0.00 4.52
343 344 4.229876 CCTTGAGTCCTTCGAAAATTTGC 58.770 43.478 0.00 0.00 0.00 3.68
344 345 4.229876 GCCTTGAGTCCTTCGAAAATTTG 58.770 43.478 0.00 0.00 0.00 2.32
345 346 3.255888 GGCCTTGAGTCCTTCGAAAATTT 59.744 43.478 0.00 0.00 0.00 1.82
346 347 2.820197 GGCCTTGAGTCCTTCGAAAATT 59.180 45.455 0.00 0.00 0.00 1.82
347 348 2.437413 GGCCTTGAGTCCTTCGAAAAT 58.563 47.619 0.00 0.00 0.00 1.82
348 349 1.876416 CGGCCTTGAGTCCTTCGAAAA 60.876 52.381 0.00 0.00 0.00 2.29
349 350 0.320421 CGGCCTTGAGTCCTTCGAAA 60.320 55.000 0.00 0.00 0.00 3.46
350 351 1.183030 TCGGCCTTGAGTCCTTCGAA 61.183 55.000 0.00 0.00 0.00 3.71
351 352 1.183030 TTCGGCCTTGAGTCCTTCGA 61.183 55.000 0.00 0.00 0.00 3.71
352 353 1.014564 GTTCGGCCTTGAGTCCTTCG 61.015 60.000 0.00 0.00 0.00 3.79
353 354 0.321996 AGTTCGGCCTTGAGTCCTTC 59.678 55.000 0.00 0.00 0.00 3.46
354 355 0.321996 GAGTTCGGCCTTGAGTCCTT 59.678 55.000 0.00 0.00 0.00 3.36
355 356 0.543174 AGAGTTCGGCCTTGAGTCCT 60.543 55.000 0.00 0.00 0.00 3.85
356 357 0.321996 AAGAGTTCGGCCTTGAGTCC 59.678 55.000 0.00 0.00 0.00 3.85
357 358 1.270358 ACAAGAGTTCGGCCTTGAGTC 60.270 52.381 0.00 0.00 41.56 3.36
358 359 0.759346 ACAAGAGTTCGGCCTTGAGT 59.241 50.000 0.00 0.00 41.56 3.41
359 360 2.743636 TACAAGAGTTCGGCCTTGAG 57.256 50.000 0.00 0.00 41.56 3.02
360 361 2.354704 CCATACAAGAGTTCGGCCTTGA 60.355 50.000 0.00 0.00 41.56 3.02
361 362 2.009774 CCATACAAGAGTTCGGCCTTG 58.990 52.381 0.00 0.00 43.84 3.61
362 363 1.679032 GCCATACAAGAGTTCGGCCTT 60.679 52.381 0.00 0.00 37.70 4.35
363 364 0.107654 GCCATACAAGAGTTCGGCCT 60.108 55.000 0.00 0.00 37.70 5.19
364 365 0.107654 AGCCATACAAGAGTTCGGCC 60.108 55.000 0.00 0.00 42.02 6.13
365 366 1.398390 CAAGCCATACAAGAGTTCGGC 59.602 52.381 0.00 0.00 41.62 5.54
366 367 2.009774 CCAAGCCATACAAGAGTTCGG 58.990 52.381 0.00 0.00 0.00 4.30
367 368 2.009774 CCCAAGCCATACAAGAGTTCG 58.990 52.381 0.00 0.00 0.00 3.95
368 369 3.010420 GACCCAAGCCATACAAGAGTTC 58.990 50.000 0.00 0.00 0.00 3.01
369 370 2.615493 CGACCCAAGCCATACAAGAGTT 60.615 50.000 0.00 0.00 0.00 3.01
370 371 1.066143 CGACCCAAGCCATACAAGAGT 60.066 52.381 0.00 0.00 0.00 3.24
371 372 1.656652 CGACCCAAGCCATACAAGAG 58.343 55.000 0.00 0.00 0.00 2.85
372 373 0.251916 CCGACCCAAGCCATACAAGA 59.748 55.000 0.00 0.00 0.00 3.02
373 374 0.748005 CCCGACCCAAGCCATACAAG 60.748 60.000 0.00 0.00 0.00 3.16
374 375 1.202099 TCCCGACCCAAGCCATACAA 61.202 55.000 0.00 0.00 0.00 2.41
375 376 1.613928 TCCCGACCCAAGCCATACA 60.614 57.895 0.00 0.00 0.00 2.29
376 377 1.153229 GTCCCGACCCAAGCCATAC 60.153 63.158 0.00 0.00 0.00 2.39
377 378 2.372074 GGTCCCGACCCAAGCCATA 61.372 63.158 2.16 0.00 45.68 2.74
378 379 3.728373 GGTCCCGACCCAAGCCAT 61.728 66.667 2.16 0.00 45.68 4.40
393 394 1.589803 CGTTCAAAAAGACCTCCGGT 58.410 50.000 0.00 0.00 39.44 5.28
394 395 0.237498 GCGTTCAAAAAGACCTCCGG 59.763 55.000 0.00 0.00 0.00 5.14
395 396 1.069906 CAGCGTTCAAAAAGACCTCCG 60.070 52.381 0.00 0.00 0.00 4.63
396 397 1.947456 ACAGCGTTCAAAAAGACCTCC 59.053 47.619 0.00 0.00 0.00 4.30
397 398 3.692791 AACAGCGTTCAAAAAGACCTC 57.307 42.857 0.00 0.00 0.00 3.85
398 399 4.638865 ACTTAACAGCGTTCAAAAAGACCT 59.361 37.500 7.94 0.00 0.00 3.85
399 400 4.916870 ACTTAACAGCGTTCAAAAAGACC 58.083 39.130 7.94 0.00 0.00 3.85
400 401 5.798434 ACAACTTAACAGCGTTCAAAAAGAC 59.202 36.000 7.94 0.00 0.00 3.01
401 402 5.797934 CACAACTTAACAGCGTTCAAAAAGA 59.202 36.000 7.94 0.00 0.00 2.52
402 403 5.571357 ACACAACTTAACAGCGTTCAAAAAG 59.429 36.000 0.00 0.30 0.00 2.27
403 404 5.462405 ACACAACTTAACAGCGTTCAAAAA 58.538 33.333 0.00 0.00 0.00 1.94
404 405 5.049398 ACACAACTTAACAGCGTTCAAAA 57.951 34.783 0.00 0.00 0.00 2.44
405 406 4.688511 ACACAACTTAACAGCGTTCAAA 57.311 36.364 0.00 0.00 0.00 2.69
406 407 4.688511 AACACAACTTAACAGCGTTCAA 57.311 36.364 0.00 0.00 0.00 2.69
407 408 4.688511 AAACACAACTTAACAGCGTTCA 57.311 36.364 0.00 0.00 0.00 3.18
408 409 5.090083 TCAAAACACAACTTAACAGCGTTC 58.910 37.500 0.00 0.00 0.00 3.95
409 410 5.049398 TCAAAACACAACTTAACAGCGTT 57.951 34.783 0.02 0.02 0.00 4.84
410 411 4.688511 TCAAAACACAACTTAACAGCGT 57.311 36.364 0.00 0.00 0.00 5.07
411 412 5.741510 TCAATCAAAACACAACTTAACAGCG 59.258 36.000 0.00 0.00 0.00 5.18
412 413 6.751888 AGTCAATCAAAACACAACTTAACAGC 59.248 34.615 0.00 0.00 0.00 4.40
413 414 9.781834 TTAGTCAATCAAAACACAACTTAACAG 57.218 29.630 0.00 0.00 0.00 3.16
419 420 9.950680 CTTGTATTAGTCAATCAAAACACAACT 57.049 29.630 0.00 0.00 0.00 3.16
420 421 9.944663 TCTTGTATTAGTCAATCAAAACACAAC 57.055 29.630 0.00 0.00 0.00 3.32
429 430 9.098355 CGGAAGAATTCTTGTATTAGTCAATCA 57.902 33.333 25.12 0.00 46.56 2.57
430 431 8.064814 GCGGAAGAATTCTTGTATTAGTCAATC 58.935 37.037 25.12 5.96 46.56 2.67
431 432 7.552687 TGCGGAAGAATTCTTGTATTAGTCAAT 59.447 33.333 25.12 0.00 46.56 2.57
432 433 6.876789 TGCGGAAGAATTCTTGTATTAGTCAA 59.123 34.615 25.12 0.00 46.56 3.18
433 434 6.403049 TGCGGAAGAATTCTTGTATTAGTCA 58.597 36.000 25.12 8.43 46.56 3.41
434 435 6.903883 TGCGGAAGAATTCTTGTATTAGTC 57.096 37.500 25.12 8.10 46.56 2.59
435 436 7.681939 TTTGCGGAAGAATTCTTGTATTAGT 57.318 32.000 25.12 0.00 46.56 2.24
436 437 8.964420 TTTTTGCGGAAGAATTCTTGTATTAG 57.036 30.769 25.12 10.22 46.56 1.73
441 442 9.573133 CTTATATTTTTGCGGAAGAATTCTTGT 57.427 29.630 25.12 1.87 46.56 3.16
442 443 9.787532 TCTTATATTTTTGCGGAAGAATTCTTG 57.212 29.630 25.12 12.71 46.56 3.02
444 445 9.396022 TCTCTTATATTTTTGCGGAAGAATTCT 57.604 29.630 10.60 0.88 46.56 2.40
448 449 9.840427 CTTTTCTCTTATATTTTTGCGGAAGAA 57.160 29.630 0.00 0.00 0.00 2.52
449 450 9.226606 TCTTTTCTCTTATATTTTTGCGGAAGA 57.773 29.630 0.00 0.00 0.00 2.87
450 451 9.840427 TTCTTTTCTCTTATATTTTTGCGGAAG 57.160 29.630 0.00 0.00 0.00 3.46
477 478 8.825667 TTTCTTCTGCAGTTTAGTTTGTTTTT 57.174 26.923 14.67 0.00 0.00 1.94
478 479 7.063426 GCTTTCTTCTGCAGTTTAGTTTGTTTT 59.937 33.333 14.67 0.00 0.00 2.43
479 480 6.531594 GCTTTCTTCTGCAGTTTAGTTTGTTT 59.468 34.615 14.67 0.00 0.00 2.83
480 481 6.036470 GCTTTCTTCTGCAGTTTAGTTTGTT 58.964 36.000 14.67 0.00 0.00 2.83
481 482 5.358160 AGCTTTCTTCTGCAGTTTAGTTTGT 59.642 36.000 14.67 0.00 0.00 2.83
482 483 5.825507 AGCTTTCTTCTGCAGTTTAGTTTG 58.174 37.500 14.67 0.26 0.00 2.93
483 484 5.590259 TGAGCTTTCTTCTGCAGTTTAGTTT 59.410 36.000 14.67 0.00 0.00 2.66
484 485 5.126067 TGAGCTTTCTTCTGCAGTTTAGTT 58.874 37.500 14.67 3.64 0.00 2.24
485 486 4.708177 TGAGCTTTCTTCTGCAGTTTAGT 58.292 39.130 14.67 0.00 0.00 2.24
486 487 4.754114 ACTGAGCTTTCTTCTGCAGTTTAG 59.246 41.667 14.67 9.95 33.19 1.85
487 488 4.708177 ACTGAGCTTTCTTCTGCAGTTTA 58.292 39.130 14.67 0.00 33.19 2.01
488 489 3.549794 ACTGAGCTTTCTTCTGCAGTTT 58.450 40.909 14.67 0.00 33.19 2.66
489 490 3.137533 GACTGAGCTTTCTTCTGCAGTT 58.862 45.455 14.67 0.00 36.79 3.16
527 528 0.890683 GCCATTCTGGGTTGGAGTTG 59.109 55.000 0.00 0.00 38.19 3.16
546 547 4.778415 CGTCCGTCGCTGTCCCAG 62.778 72.222 0.00 0.00 34.12 4.45
620 621 8.717821 TGATACTCTTGACGGAAAATTAACAAG 58.282 33.333 0.00 0.00 36.91 3.16
647 648 1.896660 GCACAAGGCCAACTCGGAA 60.897 57.895 5.01 0.00 36.56 4.30
648 649 2.281484 GCACAAGGCCAACTCGGA 60.281 61.111 5.01 0.00 36.56 4.55
685 691 1.080025 GTGAACCCCCGAGAAGACG 60.080 63.158 0.00 0.00 0.00 4.18
1497 1686 6.072119 ACTCCTTCCGTTCCAAATTAATTGTC 60.072 38.462 0.39 0.00 37.32 3.18
1498 1687 5.773176 ACTCCTTCCGTTCCAAATTAATTGT 59.227 36.000 0.39 0.00 37.32 2.71
1499 1688 6.267496 ACTCCTTCCGTTCCAAATTAATTG 57.733 37.500 0.39 0.00 38.84 2.32
1500 1689 8.053355 AGATACTCCTTCCGTTCCAAATTAATT 58.947 33.333 0.00 0.00 0.00 1.40
1501 1690 7.574607 AGATACTCCTTCCGTTCCAAATTAAT 58.425 34.615 0.00 0.00 0.00 1.40
1502 1691 6.954232 AGATACTCCTTCCGTTCCAAATTAA 58.046 36.000 0.00 0.00 0.00 1.40
1503 1692 6.555463 AGATACTCCTTCCGTTCCAAATTA 57.445 37.500 0.00 0.00 0.00 1.40
1504 1693 5.437191 AGATACTCCTTCCGTTCCAAATT 57.563 39.130 0.00 0.00 0.00 1.82
1505 1694 5.437191 AAGATACTCCTTCCGTTCCAAAT 57.563 39.130 0.00 0.00 0.00 2.32
1506 1695 4.903045 AAGATACTCCTTCCGTTCCAAA 57.097 40.909 0.00 0.00 0.00 3.28
1507 1696 4.903045 AAAGATACTCCTTCCGTTCCAA 57.097 40.909 0.00 0.00 0.00 3.53
1508 1697 4.903045 AAAAGATACTCCTTCCGTTCCA 57.097 40.909 0.00 0.00 0.00 3.53
1509 1698 4.809958 GCTAAAAGATACTCCTTCCGTTCC 59.190 45.833 0.00 0.00 0.00 3.62
1510 1699 4.809958 GGCTAAAAGATACTCCTTCCGTTC 59.190 45.833 0.00 0.00 0.00 3.95
1511 1700 4.224370 TGGCTAAAAGATACTCCTTCCGTT 59.776 41.667 0.00 0.00 0.00 4.44
1512 1701 3.773119 TGGCTAAAAGATACTCCTTCCGT 59.227 43.478 0.00 0.00 0.00 4.69
1513 1702 4.372656 CTGGCTAAAAGATACTCCTTCCG 58.627 47.826 0.00 0.00 0.00 4.30
1514 1703 4.709250 CCTGGCTAAAAGATACTCCTTCC 58.291 47.826 0.00 0.00 0.00 3.46
1515 1704 4.130857 GCCTGGCTAAAAGATACTCCTTC 58.869 47.826 12.43 0.00 0.00 3.46
1516 1705 3.117851 GGCCTGGCTAAAAGATACTCCTT 60.118 47.826 19.68 0.00 0.00 3.36
1517 1706 2.439880 GGCCTGGCTAAAAGATACTCCT 59.560 50.000 19.68 0.00 0.00 3.69
1518 1707 2.439880 AGGCCTGGCTAAAAGATACTCC 59.560 50.000 19.68 0.00 0.00 3.85
1519 1708 3.847671 AGGCCTGGCTAAAAGATACTC 57.152 47.619 19.68 0.00 0.00 2.59
1520 1709 3.891049 CAAGGCCTGGCTAAAAGATACT 58.109 45.455 19.68 0.12 0.00 2.12
1521 1710 2.359214 GCAAGGCCTGGCTAAAAGATAC 59.641 50.000 25.97 0.00 0.00 2.24
1522 1711 2.242196 AGCAAGGCCTGGCTAAAAGATA 59.758 45.455 34.29 0.00 38.90 1.98
1546 1735 8.536340 ACTACATACCTAGTAAAAGCTTAGCT 57.464 34.615 0.00 0.00 42.56 3.32
1581 1770 6.261381 GCAAAATAATTATACAGACGACCCCA 59.739 38.462 0.00 0.00 0.00 4.96
1583 1772 7.130269 GTGCAAAATAATTATACAGACGACCC 58.870 38.462 0.00 0.00 0.00 4.46
1606 1795 3.127589 TGTGGATTCAGTACAACGTGTG 58.872 45.455 0.00 0.00 0.00 3.82
1657 1848 7.705214 GCTAACTAGCTACGTAGGCAATATAT 58.295 38.462 23.47 2.85 45.62 0.86
1679 1870 5.794726 TCACAAACTACTGTACCAAGCTA 57.205 39.130 0.00 0.00 0.00 3.32
1680 1871 4.682778 TCACAAACTACTGTACCAAGCT 57.317 40.909 0.00 0.00 0.00 3.74
1930 2124 8.427902 ACACCTCTAAGATAGCATCATCATTA 57.572 34.615 0.00 0.00 0.00 1.90
1935 2129 5.600069 TGTGACACCTCTAAGATAGCATCAT 59.400 40.000 2.45 0.00 0.00 2.45
1938 2132 7.603180 TTATGTGACACCTCTAAGATAGCAT 57.397 36.000 2.45 0.00 0.00 3.79
2032 2231 9.502145 AAAAACGTGATAATACATATTGTGCTG 57.498 29.630 0.00 0.00 0.00 4.41
2045 2244 8.747538 AGCCTTATTCCTAAAAACGTGATAAT 57.252 30.769 0.00 0.00 0.00 1.28
2049 2248 7.388437 TCTTAGCCTTATTCCTAAAAACGTGA 58.612 34.615 0.00 0.00 0.00 4.35
2116 5700 9.243105 TGAAAGGATAAGGGCATATAAAATAGC 57.757 33.333 0.00 0.00 0.00 2.97
2125 5709 8.608185 AAAAGAATTGAAAGGATAAGGGCATA 57.392 30.769 0.00 0.00 0.00 3.14
2228 5812 6.696042 AAATAAACCCAGGGCAAATAAACT 57.304 33.333 4.91 0.00 0.00 2.66
2254 5838 5.621329 CGGAACTGAAACTCCAAAACAAACT 60.621 40.000 0.00 0.00 0.00 2.66
2273 5857 2.046217 GGCTTGGAGGGTCGGAAC 60.046 66.667 0.00 0.00 0.00 3.62
2287 5878 2.149383 TGCAGGTGACTCCAAGGCT 61.149 57.895 0.00 0.00 40.21 4.58
2306 5897 2.431771 TGGTCGTCGTGCGGAATG 60.432 61.111 0.00 0.00 41.72 2.67
2319 5910 0.745845 AAGATGGCGCTCATGTGGTC 60.746 55.000 14.84 2.94 35.97 4.02
2353 5965 2.471815 ACCATTCCCGATAGTCCAGA 57.528 50.000 0.00 0.00 0.00 3.86
2374 5986 4.159377 TCGGTTCAAAATTTGCAGCTAG 57.841 40.909 0.00 0.00 0.00 3.42
2394 6006 1.337071 TCGCCCGTTGATCTAGTGATC 59.663 52.381 0.00 0.00 46.89 2.92
2431 6043 1.000843 TCATCACGTGGACTTGAGGTG 59.999 52.381 17.00 0.00 29.73 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.