Multiple sequence alignment - TraesCS6A01G042400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G042400 chr6A 100.000 5360 0 0 503 5862 22345886 22351245 0.000000e+00 9899.0
1 TraesCS6A01G042400 chr6A 93.375 1132 74 1 3462 4593 22264719 22265849 0.000000e+00 1674.0
2 TraesCS6A01G042400 chr6A 90.092 1201 85 20 870 2058 22260144 22261322 0.000000e+00 1528.0
3 TraesCS6A01G042400 chr6A 80.013 1511 206 60 2620 4083 536435188 536436649 0.000000e+00 1029.0
4 TraesCS6A01G042400 chr6A 90.340 735 33 16 2245 2975 22261374 22262074 0.000000e+00 929.0
5 TraesCS6A01G042400 chr6A 94.643 448 23 1 4586 5033 22270896 22271342 0.000000e+00 693.0
6 TraesCS6A01G042400 chr6A 93.103 435 24 4 3043 3474 22263297 22263728 2.980000e-177 632.0
7 TraesCS6A01G042400 chr6A 93.410 349 15 4 503 844 22276090 22275743 1.460000e-140 510.0
8 TraesCS6A01G042400 chr6A 84.685 333 27 6 503 835 22254547 22254855 1.590000e-80 311.0
9 TraesCS6A01G042400 chr6A 86.691 278 33 4 1326 1601 536434461 536434736 7.380000e-79 305.0
10 TraesCS6A01G042400 chr6A 82.991 341 40 14 5537 5862 22173097 22172760 5.750000e-75 292.0
11 TraesCS6A01G042400 chr6A 82.201 309 46 7 5549 5848 22199706 22200014 2.100000e-64 257.0
12 TraesCS6A01G042400 chr6A 100.000 92 0 0 1 92 22345384 22345475 2.810000e-38 171.0
13 TraesCS6A01G042400 chr6A 97.101 69 1 1 1 68 22276591 22276523 1.330000e-21 115.0
14 TraesCS6A01G042400 chr6A 95.312 64 0 1 29 92 22254154 22254214 1.340000e-16 99.0
15 TraesCS6A01G042400 chr6D 94.055 2910 124 21 2291 5167 23738172 23741065 0.000000e+00 4370.0
16 TraesCS6A01G042400 chr6D 80.386 1346 180 52 2784 4083 389982492 389983799 0.000000e+00 946.0
17 TraesCS6A01G042400 chr6D 93.916 526 29 3 5339 5862 23747463 23747987 0.000000e+00 791.0
18 TraesCS6A01G042400 chr6D 93.776 482 24 5 1331 1807 23737028 23737508 0.000000e+00 719.0
19 TraesCS6A01G042400 chr6D 90.026 391 29 5 517 903 23735929 23736313 1.130000e-136 497.0
20 TraesCS6A01G042400 chr6D 88.728 346 26 3 893 1225 23736605 23736950 1.520000e-110 411.0
21 TraesCS6A01G042400 chr6D 89.007 282 18 2 1853 2121 23737771 23738052 2.620000e-88 337.0
22 TraesCS6A01G042400 chr6D 87.313 268 30 4 1333 1598 389981448 389981713 2.650000e-78 303.0
23 TraesCS6A01G042400 chr6D 94.690 113 4 2 5173 5285 23746414 23746304 2.170000e-39 174.0
24 TraesCS6A01G042400 chr6B 93.575 2459 121 9 2742 5171 38620206 38622656 0.000000e+00 3631.0
25 TraesCS6A01G042400 chr6B 92.618 1287 74 12 2895 4171 46649748 46648473 0.000000e+00 1831.0
26 TraesCS6A01G042400 chr6B 87.361 1353 88 36 517 1839 38617521 38618820 0.000000e+00 1474.0
27 TraesCS6A01G042400 chr6B 87.916 1291 85 39 551 1809 46652199 46650948 0.000000e+00 1454.0
28 TraesCS6A01G042400 chr6B 84.806 1132 82 34 1846 2898 46650943 46649823 0.000000e+00 1055.0
29 TraesCS6A01G042400 chr6B 93.010 701 49 0 4311 5011 46626526 46625826 0.000000e+00 1024.0
30 TraesCS6A01G042400 chr6B 82.575 1033 131 31 3073 4083 584224584 584223579 0.000000e+00 865.0
31 TraesCS6A01G042400 chr6B 83.194 958 121 22 4108 5031 584223585 584222634 0.000000e+00 841.0
32 TraesCS6A01G042400 chr6B 93.905 525 25 5 5343 5862 38624285 38624807 0.000000e+00 785.0
33 TraesCS6A01G042400 chr6B 91.535 508 34 8 2254 2757 38619690 38620192 0.000000e+00 691.0
34 TraesCS6A01G042400 chr6B 85.047 321 33 11 1326 1633 584226005 584225687 4.410000e-81 313.0
35 TraesCS6A01G042400 chr6B 84.290 331 24 13 1849 2151 38619154 38619484 1.230000e-76 298.0
36 TraesCS6A01G042400 chr6B 81.481 324 49 9 5549 5862 37651691 37652013 7.540000e-64 255.0
37 TraesCS6A01G042400 chr6B 81.306 337 43 14 5539 5862 38540172 38540501 7.540000e-64 255.0
38 TraesCS6A01G042400 chr6B 80.447 358 50 14 2620 2963 584225385 584225034 7.540000e-64 255.0
39 TraesCS6A01G042400 chr6B 93.125 160 9 2 4163 4322 46627172 46627015 3.530000e-57 233.0
40 TraesCS6A01G042400 chr6B 80.435 322 43 12 5539 5848 37643705 37644018 1.640000e-55 228.0
41 TraesCS6A01G042400 chr6B 79.878 328 50 10 5549 5862 38564367 38564692 5.910000e-55 226.0
42 TraesCS6A01G042400 chr6B 79.573 328 51 10 5549 5862 46655248 46654923 2.750000e-53 220.0
43 TraesCS6A01G042400 chr6B 93.805 113 5 1 5173 5285 38623283 38623173 1.010000e-37 169.0
44 TraesCS6A01G042400 chr6B 96.875 96 2 1 5072 5167 46622323 46622229 6.080000e-35 159.0
45 TraesCS6A01G042400 chr6B 96.226 53 2 0 5288 5340 38624166 38624218 2.910000e-13 87.9
46 TraesCS6A01G042400 chr3B 93.362 1416 87 2 3406 4821 745006039 745007447 0.000000e+00 2087.0
47 TraesCS6A01G042400 chr3B 89.906 743 54 14 2245 2976 744977321 744978053 0.000000e+00 937.0
48 TraesCS6A01G042400 chr3B 91.205 307 20 4 1464 1765 744976314 744976618 1.520000e-110 411.0
49 TraesCS6A01G042400 chr3B 92.364 275 17 1 3147 3417 744978074 744978348 7.120000e-104 388.0
50 TraesCS6A01G042400 chr3B 83.882 304 21 14 1121 1416 744976032 744976315 1.250000e-66 265.0
51 TraesCS6A01G042400 chr3B 84.817 191 14 5 2014 2191 744976886 744977074 1.680000e-40 178.0
52 TraesCS6A01G042400 chr5D 81.564 358 47 15 5519 5862 520342269 520342621 1.610000e-70 278.0
53 TraesCS6A01G042400 chr5B 80.793 328 53 5 5543 5862 655284840 655284515 1.260000e-61 248.0
54 TraesCS6A01G042400 chr1A 80.503 318 54 7 5549 5862 486695858 486696171 2.730000e-58 237.0
55 TraesCS6A01G042400 chr1B 80.189 318 55 7 5549 5862 520361109 520361422 1.270000e-56 231.0
56 TraesCS6A01G042400 chr1D 87.079 178 21 2 5686 5862 386936166 386936342 3.580000e-47 200.0
57 TraesCS6A01G042400 chrUn 79.286 280 29 17 5537 5793 80173671 80173398 1.010000e-37 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G042400 chr6A 22345384 22351245 5861 False 5035.00 9899 100.000000 1 5862 2 chr6A.!!$F5 5861
1 TraesCS6A01G042400 chr6A 22260144 22265849 5705 False 1190.75 1674 91.727500 870 4593 4 chr6A.!!$F4 3723
2 TraesCS6A01G042400 chr6A 536434461 536436649 2188 False 667.00 1029 83.352000 1326 4083 2 chr6A.!!$F6 2757
3 TraesCS6A01G042400 chr6A 22275743 22276591 848 True 312.50 510 95.255500 1 844 2 chr6A.!!$R2 843
4 TraesCS6A01G042400 chr6A 22254154 22254855 701 False 205.00 311 89.998500 29 835 2 chr6A.!!$F3 806
5 TraesCS6A01G042400 chr6D 23735929 23741065 5136 False 1266.80 4370 91.118400 517 5167 5 chr6D.!!$F2 4650
6 TraesCS6A01G042400 chr6D 23747463 23747987 524 False 791.00 791 93.916000 5339 5862 1 chr6D.!!$F1 523
7 TraesCS6A01G042400 chr6D 389981448 389983799 2351 False 624.50 946 83.849500 1333 4083 2 chr6D.!!$F3 2750
8 TraesCS6A01G042400 chr6B 38617521 38624807 7286 False 1161.15 3631 91.148667 517 5862 6 chr6B.!!$F5 5345
9 TraesCS6A01G042400 chr6B 46648473 46655248 6775 True 1140.00 1831 86.228250 551 5862 4 chr6B.!!$R3 5311
10 TraesCS6A01G042400 chr6B 584222634 584226005 3371 True 568.50 865 82.815750 1326 5031 4 chr6B.!!$R4 3705
11 TraesCS6A01G042400 chr6B 46622229 46627172 4943 True 472.00 1024 94.336667 4163 5167 3 chr6B.!!$R2 1004
12 TraesCS6A01G042400 chr3B 745006039 745007447 1408 False 2087.00 2087 93.362000 3406 4821 1 chr3B.!!$F1 1415
13 TraesCS6A01G042400 chr3B 744976032 744978348 2316 False 435.80 937 88.434800 1121 3417 5 chr3B.!!$F2 2296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 3903 0.105964 TCGCTATAATTGCCTGCCGT 59.894 50.000 0.00 0.0 0.00 5.68 F
1240 4211 0.328258 GGTATCACACACCAAGCCCT 59.672 55.000 0.00 0.0 36.01 5.19 F
1243 4214 0.478072 ATCACACACCAAGCCCTTCA 59.522 50.000 0.00 0.0 0.00 3.02 F
1248 4219 1.004745 CACACCAAGCCCTTCATAGGT 59.995 52.381 0.00 0.0 40.19 3.08 F
1308 4302 1.206849 TCTCTGTTGCGGCATGACATA 59.793 47.619 2.28 0.0 0.00 2.29 F
2859 6988 1.296715 GGAACCGCTGTCACTCCAT 59.703 57.895 0.00 0.0 0.00 3.41 F
4613 11891 0.796312 ACACTTGGCGAATAAGCGTG 59.204 50.000 0.00 0.0 38.18 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2662 6631 0.744874 TCTCCTTCGGGCTGTAATCG 59.255 55.000 0.00 0.0 34.44 3.34 R
2766 6887 3.378112 ACGCAATGTGTATTTCCCATGAG 59.622 43.478 0.00 0.0 0.00 2.90 R
3041 8417 6.241385 CGCGGTGAAAAAGAAGATAAAGTAG 58.759 40.000 0.00 0.0 0.00 2.57 R
3311 9048 0.977395 GGCTAGTGGTTCTGTGAGGT 59.023 55.000 0.00 0.0 0.00 3.85 R
3399 9146 4.035909 TGTTCAAAGGTTTAAGACTTCGGC 59.964 41.667 0.00 0.0 0.00 5.54 R
4758 12046 0.034616 ACTCCAGACTTCTGTGCAGC 59.965 55.000 5.53 0.0 42.27 5.25 R
5648 17868 0.192566 ACTAGTGTGGGTCCAAGGGA 59.807 55.000 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 3.565482 CGGTATGTGAATGCCTATGCTTT 59.435 43.478 0.00 0.00 37.54 3.51
69 71 4.036734 CGGTATGTGAATGCCTATGCTTTT 59.963 41.667 0.00 0.00 35.23 2.27
70 72 5.523369 GGTATGTGAATGCCTATGCTTTTC 58.477 41.667 0.00 0.00 35.23 2.29
71 73 5.300286 GGTATGTGAATGCCTATGCTTTTCT 59.700 40.000 7.40 0.00 35.23 2.52
72 74 6.486657 GGTATGTGAATGCCTATGCTTTTCTA 59.513 38.462 7.40 0.46 35.23 2.10
73 75 7.013274 GGTATGTGAATGCCTATGCTTTTCTAA 59.987 37.037 7.40 0.00 35.23 2.10
75 77 7.225784 TGTGAATGCCTATGCTTTTCTAAAA 57.774 32.000 7.40 0.00 35.23 1.52
76 78 7.665690 TGTGAATGCCTATGCTTTTCTAAAAA 58.334 30.769 7.40 0.00 35.23 1.94
710 3338 9.649167 ACTATTACTAAGTACAAAAGATTGCGT 57.351 29.630 0.00 0.00 40.34 5.24
802 3451 1.154672 CACGTTGGACAATGCGTCG 60.155 57.895 4.26 0.00 46.42 5.12
860 3510 1.304381 GCATCCCTCCAAACCTGCA 60.304 57.895 0.00 0.00 0.00 4.41
865 3515 1.973281 CCTCCAAACCTGCATGCGT 60.973 57.895 14.09 2.34 0.00 5.24
866 3516 1.210931 CTCCAAACCTGCATGCGTG 59.789 57.895 14.09 9.02 0.00 5.34
944 3903 0.105964 TCGCTATAATTGCCTGCCGT 59.894 50.000 0.00 0.00 0.00 5.68
1225 4196 1.516704 TCCCCCATGGATACCAGGTAT 59.483 52.381 15.22 12.36 38.61 2.73
1226 4197 1.916181 CCCCCATGGATACCAGGTATC 59.084 57.143 26.39 26.39 42.75 2.24
1227 4198 2.631384 CCCCATGGATACCAGGTATCA 58.369 52.381 32.28 21.76 44.58 2.15
1228 4199 2.305927 CCCCATGGATACCAGGTATCAC 59.694 54.545 32.28 23.68 44.58 3.06
1232 4203 4.380531 CATGGATACCAGGTATCACACAC 58.619 47.826 32.28 19.26 44.58 3.82
1233 4204 2.769663 TGGATACCAGGTATCACACACC 59.230 50.000 32.28 19.59 44.58 4.16
1235 4206 3.199071 GGATACCAGGTATCACACACCAA 59.801 47.826 32.28 0.00 44.58 3.67
1236 4207 2.859165 ACCAGGTATCACACACCAAG 57.141 50.000 0.00 0.00 38.62 3.61
1238 4209 1.453155 CAGGTATCACACACCAAGCC 58.547 55.000 0.00 0.00 38.62 4.35
1240 4211 0.328258 GGTATCACACACCAAGCCCT 59.672 55.000 0.00 0.00 36.01 5.19
1241 4212 1.271926 GGTATCACACACCAAGCCCTT 60.272 52.381 0.00 0.00 36.01 3.95
1242 4213 2.084546 GTATCACACACCAAGCCCTTC 58.915 52.381 0.00 0.00 0.00 3.46
1243 4214 0.478072 ATCACACACCAAGCCCTTCA 59.522 50.000 0.00 0.00 0.00 3.02
1245 4216 1.702401 TCACACACCAAGCCCTTCATA 59.298 47.619 0.00 0.00 0.00 2.15
1246 4217 2.086869 CACACACCAAGCCCTTCATAG 58.913 52.381 0.00 0.00 0.00 2.23
1248 4219 1.004745 CACACCAAGCCCTTCATAGGT 59.995 52.381 0.00 0.00 40.19 3.08
1249 4220 1.710809 ACACCAAGCCCTTCATAGGTT 59.289 47.619 0.00 0.00 40.19 3.50
1294 4282 4.471904 TCATACCGCATTTCTTCTCTGT 57.528 40.909 0.00 0.00 0.00 3.41
1301 4289 1.536766 CATTTCTTCTCTGTTGCGGCA 59.463 47.619 0.00 0.00 0.00 5.69
1308 4302 1.206849 TCTCTGTTGCGGCATGACATA 59.793 47.619 2.28 0.00 0.00 2.29
1313 4307 2.491298 TGTTGCGGCATGACATAACATT 59.509 40.909 12.25 0.00 0.00 2.71
1571 4566 3.361977 GGCCGTCAACGCCAACAT 61.362 61.111 9.95 0.00 38.18 2.71
1656 4682 5.790593 TGTTACTTTTGGAGTAGTAGCTGG 58.209 41.667 0.00 0.00 41.68 4.85
1771 4808 8.794406 GTTATCATTTTGCAGTATTTTGGTACG 58.206 33.333 0.00 0.00 0.00 3.67
1795 4833 9.537192 ACGATCTTTCACGTCCAAAAATATATA 57.463 29.630 0.00 0.00 38.34 0.86
1921 5296 2.083774 GCTCATCCACGTCAATCCAAA 58.916 47.619 0.00 0.00 0.00 3.28
2123 5714 8.677300 CAAACAGCACATAATCTTGTTATACCT 58.323 33.333 0.00 0.00 0.00 3.08
2170 5772 8.839310 ATATACACAACAGCTAGGATCAAATC 57.161 34.615 0.00 0.00 0.00 2.17
2180 5800 5.598830 AGCTAGGATCAAATCGTCCTCTTAA 59.401 40.000 0.00 0.00 43.63 1.85
2193 6033 7.388460 TCGTCCTCTTAACTAGAAAGTAAGG 57.612 40.000 0.00 4.22 33.75 2.69
2195 6035 7.449704 TCGTCCTCTTAACTAGAAAGTAAGGTT 59.550 37.037 0.00 0.00 33.75 3.50
2198 6038 6.594547 CCTCTTAACTAGAAAGTAAGGTTGGC 59.405 42.308 0.00 0.00 33.75 4.52
2222 6074 6.481644 GCCTTTCTCATCATGAAAGTAGTAGG 59.518 42.308 0.00 3.26 45.13 3.18
2223 6075 6.989169 CCTTTCTCATCATGAAAGTAGTAGGG 59.011 42.308 0.00 0.00 45.13 3.53
2224 6076 7.365117 CCTTTCTCATCATGAAAGTAGTAGGGT 60.365 40.741 0.00 0.00 45.13 4.34
2225 6077 7.496346 TTCTCATCATGAAAGTAGTAGGGTT 57.504 36.000 0.00 0.00 0.00 4.11
2264 6176 3.372206 GGCATGACAGTAGTAGTTGCTTG 59.628 47.826 0.00 0.00 31.42 4.01
2662 6631 1.869767 CTAGATTGCATCTTCGGCACC 59.130 52.381 4.35 0.00 41.75 5.01
2859 6988 1.296715 GGAACCGCTGTCACTCCAT 59.703 57.895 0.00 0.00 0.00 3.41
2976 7183 4.163458 TCGCCAGGTAGATTCCATTTAAGT 59.837 41.667 0.00 0.00 0.00 2.24
3001 8372 5.489792 AAGCTCCTCACACAATTCTAGAA 57.510 39.130 7.82 7.82 0.00 2.10
3003 8374 5.241662 AGCTCCTCACACAATTCTAGAAAC 58.758 41.667 9.71 0.00 0.00 2.78
3041 8417 5.682943 TGTAGTTTGCAGTACAACCAATC 57.317 39.130 0.00 0.00 38.23 2.67
3311 9048 3.643320 CTCATACAGGTGCTAATCAGGGA 59.357 47.826 0.00 0.00 0.00 4.20
3341 9078 5.352569 CAGAACCACTAGCCTTACATTTGAG 59.647 44.000 0.00 0.00 0.00 3.02
3489 10248 1.622607 TATGGTGGGGACTTGAGGCG 61.623 60.000 0.00 0.00 0.00 5.52
3703 10465 2.749076 CAAAGCCAGATGAACAATCCGA 59.251 45.455 0.00 0.00 35.72 4.55
3706 10468 2.437281 AGCCAGATGAACAATCCGATCT 59.563 45.455 0.00 0.00 35.72 2.75
3707 10469 3.118112 AGCCAGATGAACAATCCGATCTT 60.118 43.478 0.00 0.00 35.72 2.40
3749 10511 1.673920 GACGTGACAAACAATGGTGGT 59.326 47.619 0.00 0.00 0.00 4.16
3918 10680 1.474478 TGGCGTGTGACAAAACAATGT 59.526 42.857 0.00 0.00 35.90 2.71
4017 10779 1.153667 GAGCAGCGAGGAAGACCAG 60.154 63.158 0.00 0.00 38.94 4.00
4037 10799 1.888512 GGCAAAGTTTCATCTGGCAGA 59.111 47.619 21.19 21.19 34.67 4.26
4074 10836 1.135199 GGTTGCTTGGATGCATCTGTG 60.135 52.381 25.28 15.68 42.96 3.66
4231 10995 3.954200 TGCAGAAATCTGTGGAGCATTA 58.046 40.909 11.77 0.00 45.45 1.90
4441 11718 4.536489 AGCAAGGAAGGAGGTACAAGTTAT 59.464 41.667 0.00 0.00 0.00 1.89
4493 11771 9.143631 TCGCTATTTTTACCTAAGTAACACTTC 57.856 33.333 0.00 0.00 39.51 3.01
4504 11782 2.538449 AGTAACACTTCTGTTTGACGCG 59.462 45.455 3.53 3.53 41.15 6.01
4613 11891 0.796312 ACACTTGGCGAATAAGCGTG 59.204 50.000 0.00 0.00 38.18 5.34
4663 11942 3.261390 GCATGGAAGCAGGAGAGATCTAT 59.739 47.826 0.00 0.00 0.00 1.98
4736 12015 3.532542 CCGGATCTAGAAAAGGTTGTCC 58.467 50.000 0.00 0.00 0.00 4.02
4854 12142 3.244976 GCTCCATGTTGTTTGAAATCCG 58.755 45.455 0.00 0.00 0.00 4.18
4913 12205 5.759059 ACTTGGAAGCATAGAATGATTGGA 58.241 37.500 0.00 0.00 39.27 3.53
5076 15839 3.005155 GCTGAAAATCTACCCATGGATGC 59.995 47.826 15.22 0.00 0.00 3.91
5122 15885 6.839124 ATTGTCATATGAACCTTGAAAGCA 57.161 33.333 7.07 0.00 0.00 3.91
5171 15934 7.814264 ATTTCAGGTCAAAGCAATATAGAGG 57.186 36.000 0.00 0.00 0.00 3.69
5172 15935 4.708177 TCAGGTCAAAGCAATATAGAGGC 58.292 43.478 0.00 0.00 0.00 4.70
5174 15937 4.883585 CAGGTCAAAGCAATATAGAGGCAA 59.116 41.667 0.00 0.00 0.00 4.52
5175 15938 5.008415 CAGGTCAAAGCAATATAGAGGCAAG 59.992 44.000 0.00 0.00 0.00 4.01
5176 15939 5.104360 AGGTCAAAGCAATATAGAGGCAAGA 60.104 40.000 0.00 0.00 0.00 3.02
5177 15940 5.767168 GGTCAAAGCAATATAGAGGCAAGAT 59.233 40.000 0.00 0.00 0.00 2.40
5178 15941 6.936900 GGTCAAAGCAATATAGAGGCAAGATA 59.063 38.462 0.00 0.00 0.00 1.98
5182 16779 5.097234 AGCAATATAGAGGCAAGATACCCT 58.903 41.667 0.00 0.00 0.00 4.34
5186 16783 7.308830 GCAATATAGAGGCAAGATACCCTTTTG 60.309 40.741 0.00 0.00 31.42 2.44
5188 16785 4.388577 AGAGGCAAGATACCCTTTTGTT 57.611 40.909 0.00 0.00 31.42 2.83
5189 16786 4.740902 AGAGGCAAGATACCCTTTTGTTT 58.259 39.130 0.00 0.00 31.42 2.83
5190 16787 5.147767 AGAGGCAAGATACCCTTTTGTTTT 58.852 37.500 0.00 0.00 31.42 2.43
5213 16810 0.469494 CTTTGGCAAGGGGTTGCTTT 59.531 50.000 9.79 0.00 46.56 3.51
5214 16811 0.915364 TTTGGCAAGGGGTTGCTTTT 59.085 45.000 9.79 0.00 46.56 2.27
5218 16815 2.708325 TGGCAAGGGGTTGCTTTTAAAT 59.292 40.909 9.79 0.00 46.56 1.40
5221 16818 4.215399 GGCAAGGGGTTGCTTTTAAATTTC 59.785 41.667 9.79 0.00 46.56 2.17
5222 16819 4.819088 GCAAGGGGTTGCTTTTAAATTTCA 59.181 37.500 0.00 0.00 44.15 2.69
5223 16820 5.473162 GCAAGGGGTTGCTTTTAAATTTCAT 59.527 36.000 0.00 0.00 44.15 2.57
5228 16825 8.601546 AGGGGTTGCTTTTAAATTTCATATTGA 58.398 29.630 0.00 0.00 0.00 2.57
5229 16826 9.394767 GGGGTTGCTTTTAAATTTCATATTGAT 57.605 29.630 0.00 0.00 0.00 2.57
5261 16858 9.612066 AAAATCACAGTACCATTTTTGTTTCAT 57.388 25.926 0.00 0.00 0.00 2.57
5263 16860 6.434596 TCACAGTACCATTTTTGTTTCATCG 58.565 36.000 0.00 0.00 0.00 3.84
5265 16862 5.300792 ACAGTACCATTTTTGTTTCATCGGT 59.699 36.000 0.00 0.00 0.00 4.69
5266 16863 6.487331 ACAGTACCATTTTTGTTTCATCGGTA 59.513 34.615 0.00 0.00 0.00 4.02
5267 16864 7.013464 ACAGTACCATTTTTGTTTCATCGGTAA 59.987 33.333 0.00 0.00 30.00 2.85
5268 16865 7.863375 CAGTACCATTTTTGTTTCATCGGTAAA 59.137 33.333 0.00 0.00 30.00 2.01
5270 16867 6.811954 ACCATTTTTGTTTCATCGGTAAACT 58.188 32.000 0.00 0.00 37.64 2.66
5271 16868 7.269316 ACCATTTTTGTTTCATCGGTAAACTT 58.731 30.769 0.00 0.00 37.64 2.66
5272 16869 7.223777 ACCATTTTTGTTTCATCGGTAAACTTG 59.776 33.333 0.00 0.00 37.64 3.16
5273 16870 6.576551 TTTTTGTTTCATCGGTAAACTTGC 57.423 33.333 0.00 0.00 37.64 4.01
5274 16871 5.508200 TTTGTTTCATCGGTAAACTTGCT 57.492 34.783 0.00 0.00 37.64 3.91
5276 16873 6.811253 TTGTTTCATCGGTAAACTTGCTAT 57.189 33.333 0.00 0.00 37.64 2.97
5277 16874 7.908827 TTGTTTCATCGGTAAACTTGCTATA 57.091 32.000 0.00 0.00 37.64 1.31
5278 16875 7.298507 TGTTTCATCGGTAAACTTGCTATAC 57.701 36.000 0.00 0.00 37.64 1.47
5279 16876 6.314400 TGTTTCATCGGTAAACTTGCTATACC 59.686 38.462 0.00 0.00 37.64 2.73
5280 16877 5.864418 TCATCGGTAAACTTGCTATACCT 57.136 39.130 0.00 0.00 37.52 3.08
5281 16878 6.229936 TCATCGGTAAACTTGCTATACCTT 57.770 37.500 0.00 0.00 37.52 3.50
5282 16879 6.646267 TCATCGGTAAACTTGCTATACCTTT 58.354 36.000 0.00 0.00 37.52 3.11
5284 16881 8.259411 TCATCGGTAAACTTGCTATACCTTTTA 58.741 33.333 0.00 0.00 37.52 1.52
5285 16882 7.832503 TCGGTAAACTTGCTATACCTTTTAC 57.167 36.000 0.00 0.00 37.52 2.01
5286 16883 6.818142 TCGGTAAACTTGCTATACCTTTTACC 59.182 38.462 9.93 9.93 42.42 2.85
5287 16884 6.820152 CGGTAAACTTGCTATACCTTTTACCT 59.180 38.462 15.50 0.00 43.13 3.08
5288 16885 7.201582 CGGTAAACTTGCTATACCTTTTACCTG 60.202 40.741 15.50 8.20 43.13 4.00
5289 16886 7.825761 GGTAAACTTGCTATACCTTTTACCTGA 59.174 37.037 11.95 0.00 42.50 3.86
5292 16889 5.045869 ACTTGCTATACCTTTTACCTGAGCA 60.046 40.000 0.00 0.00 36.93 4.26
5293 16890 5.023533 TGCTATACCTTTTACCTGAGCAG 57.976 43.478 0.00 0.00 33.95 4.24
5294 16891 4.714802 TGCTATACCTTTTACCTGAGCAGA 59.285 41.667 0.00 0.00 33.95 4.26
5297 16894 6.768381 GCTATACCTTTTACCTGAGCAGAAAT 59.232 38.462 0.00 0.00 0.00 2.17
5298 16895 7.931948 GCTATACCTTTTACCTGAGCAGAAATA 59.068 37.037 0.00 0.00 0.00 1.40
5351 17507 5.796424 ATTGCACATGGAGTCTTTTTCTT 57.204 34.783 0.00 0.00 0.00 2.52
5452 17671 5.298276 TGGTTCAGAAAGCTAAACGAAACAT 59.702 36.000 3.28 0.00 33.95 2.71
5493 17712 4.794003 GCCCAGTTGAGAAACAATGTTCAG 60.794 45.833 0.00 0.00 40.76 3.02
5499 17718 7.967854 CAGTTGAGAAACAATGTTCAGTTGTTA 59.032 33.333 0.00 0.00 46.01 2.41
5524 17744 6.531503 TTCAACAACCAAAGTATTCCACAA 57.468 33.333 0.00 0.00 0.00 3.33
5551 17771 9.758651 TTTATAGAATAATTCAGTTAGCGAGCA 57.241 29.630 0.00 0.00 0.00 4.26
5552 17772 9.758651 TTATAGAATAATTCAGTTAGCGAGCAA 57.241 29.630 0.00 0.00 0.00 3.91
5578 17798 4.536765 GATTAACCACATGACCCAGGAAT 58.463 43.478 0.00 0.00 0.00 3.01
5608 17828 1.694150 CTTGTCCTCTCCTCAACCACA 59.306 52.381 0.00 0.00 0.00 4.17
5614 17834 1.876156 CTCTCCTCAACCACAGCAAAC 59.124 52.381 0.00 0.00 0.00 2.93
5648 17868 1.545582 CCGCCACAAAATCCATCAGTT 59.454 47.619 0.00 0.00 0.00 3.16
5684 17907 5.889853 ACACTAGTAGTCCCAATTACGATGA 59.110 40.000 0.00 0.00 0.00 2.92
5725 17948 2.052690 GCCTAGCTCGTCCACCTCA 61.053 63.158 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 2.102588 AGGCATTCACATACCGGTAGAC 59.897 50.000 20.91 6.48 0.00 2.59
513 515 2.542907 CGCCCAACATGGATACCGC 61.543 63.158 0.00 0.00 40.96 5.68
514 516 1.153249 ACGCCCAACATGGATACCG 60.153 57.895 0.00 0.00 40.96 4.02
615 3238 6.451393 AGCATGGTTTAATTGCGTTTTAAGA 58.549 32.000 0.00 0.00 41.22 2.10
802 3451 2.595754 GGAATCCATCTGGCCGCC 60.596 66.667 1.04 1.04 34.44 6.13
1020 3987 1.679305 GGACGTGAGGAGGAGAGCA 60.679 63.158 0.00 0.00 0.00 4.26
1023 3990 1.000771 CAGGGACGTGAGGAGGAGA 60.001 63.158 0.00 0.00 0.00 3.71
1225 4196 0.478072 ATGAAGGGCTTGGTGTGTGA 59.522 50.000 0.00 0.00 0.00 3.58
1226 4197 2.086869 CTATGAAGGGCTTGGTGTGTG 58.913 52.381 0.00 0.00 0.00 3.82
1227 4198 1.004745 CCTATGAAGGGCTTGGTGTGT 59.995 52.381 0.00 0.00 39.48 3.72
1228 4199 1.755179 CCTATGAAGGGCTTGGTGTG 58.245 55.000 0.00 0.00 39.48 3.82
1253 4224 9.288576 GGTATGATCATCCATACTTGAATGAAA 57.711 33.333 12.53 0.00 44.98 2.69
1256 4227 6.183360 GCGGTATGATCATCCATACTTGAATG 60.183 42.308 12.53 0.00 44.98 2.67
1257 4228 5.877012 GCGGTATGATCATCCATACTTGAAT 59.123 40.000 12.53 0.00 44.98 2.57
1258 4229 5.221621 TGCGGTATGATCATCCATACTTGAA 60.222 40.000 12.53 0.00 44.98 2.69
1259 4230 4.283212 TGCGGTATGATCATCCATACTTGA 59.717 41.667 12.53 0.00 44.98 3.02
1260 4231 4.568956 TGCGGTATGATCATCCATACTTG 58.431 43.478 12.53 3.55 44.98 3.16
1261 4232 4.890158 TGCGGTATGATCATCCATACTT 57.110 40.909 12.53 0.00 44.98 2.24
1264 4243 6.053632 AGAAATGCGGTATGATCATCCATA 57.946 37.500 12.53 5.80 0.00 2.74
1294 4282 4.195416 TCTAATGTTATGTCATGCCGCAA 58.805 39.130 0.00 0.00 0.00 4.85
1301 4289 6.148315 CGGTGCATCATCTAATGTTATGTCAT 59.852 38.462 0.00 0.00 0.00 3.06
1308 4302 2.355756 GCACGGTGCATCATCTAATGTT 59.644 45.455 27.10 0.00 44.26 2.71
1341 4336 4.024670 GGTACCACAGGAAGTCTATCACT 58.975 47.826 7.15 0.00 36.64 3.41
1571 4566 3.458163 GGACGTCGAGGATGGGCA 61.458 66.667 12.85 0.00 0.00 5.36
1634 4657 5.791666 ACCAGCTACTACTCCAAAAGTAAC 58.208 41.667 0.00 0.00 39.98 2.50
1641 4664 4.347000 AGACAAAACCAGCTACTACTCCAA 59.653 41.667 0.00 0.00 0.00 3.53
1656 4682 4.180817 CAACCCAAACCTGAAGACAAAAC 58.819 43.478 0.00 0.00 0.00 2.43
1895 5270 4.082523 ACGTGGATGAGCGGGTGG 62.083 66.667 0.00 0.00 0.00 4.61
1921 5296 9.912634 CACTAAACATCAAATCAACATAGGTTT 57.087 29.630 0.00 0.00 34.21 3.27
2133 5724 8.528643 AGCTGTTGTGTATATACTTGTCTACAA 58.471 33.333 13.89 11.18 0.00 2.41
2151 5742 4.184629 GACGATTTGATCCTAGCTGTTGT 58.815 43.478 0.00 0.00 0.00 3.32
2170 5772 7.155655 ACCTTACTTTCTAGTTAAGAGGACG 57.844 40.000 15.47 0.00 35.05 4.79
2193 6033 4.741342 CTTTCATGATGAGAAAGGCCAAC 58.259 43.478 5.01 0.00 45.06 3.77
2238 6090 2.834113 ACTACTACTGTCATGCCCCTT 58.166 47.619 0.00 0.00 0.00 3.95
2567 6517 3.582647 TCAGTTCTAAGGACTGCAATCCA 59.417 43.478 17.91 0.00 41.73 3.41
2662 6631 0.744874 TCTCCTTCGGGCTGTAATCG 59.255 55.000 0.00 0.00 34.44 3.34
2766 6887 3.378112 ACGCAATGTGTATTTCCCATGAG 59.622 43.478 0.00 0.00 0.00 2.90
2859 6988 7.330262 TGTTGTGTGATATTCTCAGCTAATGA 58.670 34.615 0.00 0.00 33.51 2.57
2976 7183 7.898014 TCTAGAATTGTGTGAGGAGCTTATA 57.102 36.000 0.00 0.00 0.00 0.98
3041 8417 6.241385 CGCGGTGAAAAAGAAGATAAAGTAG 58.759 40.000 0.00 0.00 0.00 2.57
3311 9048 0.977395 GGCTAGTGGTTCTGTGAGGT 59.023 55.000 0.00 0.00 0.00 3.85
3399 9146 4.035909 TGTTCAAAGGTTTAAGACTTCGGC 59.964 41.667 0.00 0.00 0.00 5.54
3402 9149 8.926715 AAATGTGTTCAAAGGTTTAAGACTTC 57.073 30.769 0.00 0.00 0.00 3.01
3489 10248 0.840729 GAATGTGCGATCGTCGAGAC 59.159 55.000 17.81 6.69 43.74 3.36
3703 10465 3.809905 GGATAGCCGGACTTTGAAAGAT 58.190 45.455 12.53 0.00 0.00 2.40
3749 10511 5.626809 GCATGTACTGAGACCAAGAACCATA 60.627 44.000 0.00 0.00 0.00 2.74
3788 10550 1.906574 GAGGAACTGTACCATCCACCA 59.093 52.381 10.29 0.00 41.55 4.17
4017 10779 1.888512 TCTGCCAGATGAAACTTTGCC 59.111 47.619 0.00 0.00 0.00 4.52
4037 10799 3.565482 GCAACCATCATCGGTGTCAATAT 59.435 43.478 0.00 0.00 39.95 1.28
4074 10836 0.674895 AGCTTGTTCGCCATGGACTC 60.675 55.000 18.40 2.74 0.00 3.36
4219 10983 4.193865 TCATGACACATAATGCTCCACAG 58.806 43.478 0.00 0.00 0.00 3.66
4441 11718 9.621629 ATTAATTTATGGTGAATCGGTGTAGAA 57.378 29.630 0.00 0.00 0.00 2.10
4493 11771 1.487482 TTCTCTGTCGCGTCAAACAG 58.513 50.000 17.01 17.01 43.41 3.16
4504 11782 4.425520 CTCCGGTAGTTTCATTCTCTGTC 58.574 47.826 0.00 0.00 0.00 3.51
4663 11942 0.321564 CGAGGTTGAAGATGGCCACA 60.322 55.000 8.16 0.00 0.00 4.17
4736 12015 0.593128 CACCTTGCCAACTTTCTCCG 59.407 55.000 0.00 0.00 0.00 4.63
4758 12046 0.034616 ACTCCAGACTTCTGTGCAGC 59.965 55.000 5.53 0.00 42.27 5.25
4783 12071 2.240667 CCCCTTCATCACACTCCATCTT 59.759 50.000 0.00 0.00 0.00 2.40
4854 12142 6.879400 ACATTATTAGAGAGACCTCAACACC 58.121 40.000 0.00 0.00 41.87 4.16
4913 12205 7.924412 TCGACAAACAACTAGAGAATTTACACT 59.076 33.333 0.00 0.00 0.00 3.55
5055 15818 4.209538 TGCATCCATGGGTAGATTTTCAG 58.790 43.478 13.02 0.00 0.00 3.02
5076 15839 7.678194 ATTCGTTTTGTTTATCAGTGTGTTG 57.322 32.000 0.00 0.00 0.00 3.33
5122 15885 6.428295 TGAAGGATGGATATTTTACGGGTTT 58.572 36.000 0.00 0.00 0.00 3.27
5188 16785 3.682999 GCAACCCCTTGCCAAAGTAAAAA 60.683 43.478 0.00 0.00 46.27 1.94
5189 16786 2.158885 GCAACCCCTTGCCAAAGTAAAA 60.159 45.455 0.00 0.00 46.27 1.52
5190 16787 1.414550 GCAACCCCTTGCCAAAGTAAA 59.585 47.619 0.00 0.00 46.27 2.01
5193 16790 3.549730 GCAACCCCTTGCCAAAGT 58.450 55.556 0.00 0.00 46.27 2.66
5200 16797 8.791327 ATATGAAATTTAAAAGCAACCCCTTG 57.209 30.769 0.00 0.00 0.00 3.61
5201 16798 9.230122 CAATATGAAATTTAAAAGCAACCCCTT 57.770 29.630 0.00 0.00 0.00 3.95
5202 16799 8.601546 TCAATATGAAATTTAAAAGCAACCCCT 58.398 29.630 0.00 0.00 0.00 4.79
5203 16800 8.785329 TCAATATGAAATTTAAAAGCAACCCC 57.215 30.769 0.00 0.00 0.00 4.95
5235 16832 9.612066 ATGAAACAAAAATGGTACTGTGATTTT 57.388 25.926 0.00 0.00 32.01 1.82
5237 16834 7.594758 CGATGAAACAAAAATGGTACTGTGATT 59.405 33.333 0.00 0.00 0.00 2.57
5238 16835 7.083858 CGATGAAACAAAAATGGTACTGTGAT 58.916 34.615 0.00 0.00 0.00 3.06
5239 16836 6.434596 CGATGAAACAAAAATGGTACTGTGA 58.565 36.000 0.00 0.00 0.00 3.58
5240 16837 5.629020 CCGATGAAACAAAAATGGTACTGTG 59.371 40.000 0.00 0.00 0.00 3.66
5241 16838 5.300792 ACCGATGAAACAAAAATGGTACTGT 59.699 36.000 0.00 0.00 0.00 3.55
5242 16839 5.768317 ACCGATGAAACAAAAATGGTACTG 58.232 37.500 0.00 0.00 0.00 2.74
5243 16840 7.513371 TTACCGATGAAACAAAAATGGTACT 57.487 32.000 0.00 0.00 30.91 2.73
5244 16841 7.863877 AGTTTACCGATGAAACAAAAATGGTAC 59.136 33.333 8.74 0.00 38.91 3.34
5246 16843 6.811954 AGTTTACCGATGAAACAAAAATGGT 58.188 32.000 8.74 0.00 38.91 3.55
5247 16844 7.563270 CAAGTTTACCGATGAAACAAAAATGG 58.437 34.615 8.74 0.00 38.91 3.16
5249 16846 6.983890 AGCAAGTTTACCGATGAAACAAAAAT 59.016 30.769 8.74 0.00 38.91 1.82
5250 16847 6.334202 AGCAAGTTTACCGATGAAACAAAAA 58.666 32.000 8.74 0.00 38.91 1.94
5251 16848 5.897050 AGCAAGTTTACCGATGAAACAAAA 58.103 33.333 8.74 0.00 38.91 2.44
5252 16849 5.508200 AGCAAGTTTACCGATGAAACAAA 57.492 34.783 8.74 0.00 38.91 2.83
5253 16850 6.811253 ATAGCAAGTTTACCGATGAAACAA 57.189 33.333 8.74 0.00 38.91 2.83
5254 16851 6.314400 GGTATAGCAAGTTTACCGATGAAACA 59.686 38.462 0.00 0.00 38.91 2.83
5256 16853 6.646267 AGGTATAGCAAGTTTACCGATGAAA 58.354 36.000 4.48 0.00 40.28 2.69
5257 16854 6.229936 AGGTATAGCAAGTTTACCGATGAA 57.770 37.500 4.48 0.00 40.28 2.57
5258 16855 5.864418 AGGTATAGCAAGTTTACCGATGA 57.136 39.130 4.48 0.00 40.28 2.92
5261 16858 6.818142 GGTAAAAGGTATAGCAAGTTTACCGA 59.182 38.462 24.09 2.67 40.09 4.69
5263 16860 7.825761 TCAGGTAAAAGGTATAGCAAGTTTACC 59.174 37.037 27.25 27.25 45.59 2.85
5265 16862 7.551617 GCTCAGGTAAAAGGTATAGCAAGTTTA 59.448 37.037 4.48 3.55 0.00 2.01
5266 16863 6.374613 GCTCAGGTAAAAGGTATAGCAAGTTT 59.625 38.462 4.48 4.44 0.00 2.66
5267 16864 5.880887 GCTCAGGTAAAAGGTATAGCAAGTT 59.119 40.000 4.48 0.00 0.00 2.66
5268 16865 5.045869 TGCTCAGGTAAAAGGTATAGCAAGT 60.046 40.000 4.48 0.00 35.91 3.16
5270 16867 5.188948 TCTGCTCAGGTAAAAGGTATAGCAA 59.811 40.000 4.48 0.00 38.18 3.91
5271 16868 4.714802 TCTGCTCAGGTAAAAGGTATAGCA 59.285 41.667 4.48 0.00 37.22 3.49
5272 16869 5.277857 TCTGCTCAGGTAAAAGGTATAGC 57.722 43.478 0.00 0.00 0.00 2.97
5278 16875 8.940952 GCTATATATTTCTGCTCAGGTAAAAGG 58.059 37.037 0.00 0.00 0.00 3.11
5279 16876 8.940952 GGCTATATATTTCTGCTCAGGTAAAAG 58.059 37.037 0.00 0.00 0.00 2.27
5280 16877 8.436778 TGGCTATATATTTCTGCTCAGGTAAAA 58.563 33.333 0.00 0.00 0.00 1.52
5281 16878 7.973402 TGGCTATATATTTCTGCTCAGGTAAA 58.027 34.615 0.00 0.00 0.00 2.01
5282 16879 7.553504 TGGCTATATATTTCTGCTCAGGTAA 57.446 36.000 0.00 0.00 0.00 2.85
5284 16881 6.183361 TGTTGGCTATATATTTCTGCTCAGGT 60.183 38.462 0.00 0.00 0.00 4.00
5285 16882 6.233434 TGTTGGCTATATATTTCTGCTCAGG 58.767 40.000 0.00 0.00 0.00 3.86
5286 16883 6.128336 GCTGTTGGCTATATATTTCTGCTCAG 60.128 42.308 0.00 0.00 38.06 3.35
5287 16884 5.702670 GCTGTTGGCTATATATTTCTGCTCA 59.297 40.000 0.00 0.00 38.06 4.26
5288 16885 5.702670 TGCTGTTGGCTATATATTTCTGCTC 59.297 40.000 0.00 0.00 42.39 4.26
5289 16886 5.624159 TGCTGTTGGCTATATATTTCTGCT 58.376 37.500 0.00 0.00 42.39 4.24
5292 16889 6.712547 GGAGTTGCTGTTGGCTATATATTTCT 59.287 38.462 0.00 0.00 42.39 2.52
5293 16890 6.486657 TGGAGTTGCTGTTGGCTATATATTTC 59.513 38.462 0.00 0.00 42.39 2.17
5294 16891 6.263168 GTGGAGTTGCTGTTGGCTATATATTT 59.737 38.462 0.00 0.00 42.39 1.40
5297 16894 4.163268 TGTGGAGTTGCTGTTGGCTATATA 59.837 41.667 0.00 0.00 42.39 0.86
5298 16895 3.054434 TGTGGAGTTGCTGTTGGCTATAT 60.054 43.478 0.00 0.00 42.39 0.86
5299 16896 2.304470 TGTGGAGTTGCTGTTGGCTATA 59.696 45.455 0.00 0.00 42.39 1.31
5300 16897 1.073763 TGTGGAGTTGCTGTTGGCTAT 59.926 47.619 0.00 0.00 42.39 2.97
5357 17576 1.341383 ACCAGATTCATGCCCAGGAAC 60.341 52.381 0.00 0.00 33.72 3.62
5445 17664 9.813080 GCTTAATTAGCTAAAGGATATGTTTCG 57.187 33.333 10.85 0.00 46.77 3.46
5468 17687 3.299503 ACATTGTTTCTCAACTGGGCTT 58.700 40.909 0.00 0.00 38.97 4.35
5499 17718 7.118496 TGTGGAATACTTTGGTTGTTGAATT 57.882 32.000 0.00 0.00 0.00 2.17
5530 17750 6.341316 TCTTGCTCGCTAACTGAATTATTCT 58.659 36.000 6.50 0.00 0.00 2.40
5547 17767 4.333926 GTCATGTGGTTAATCCTCTTGCTC 59.666 45.833 0.00 0.00 35.90 4.26
5548 17768 4.265073 GTCATGTGGTTAATCCTCTTGCT 58.735 43.478 0.00 0.00 35.90 3.91
5549 17769 3.378427 GGTCATGTGGTTAATCCTCTTGC 59.622 47.826 0.00 0.00 35.90 4.01
5550 17770 3.947834 GGGTCATGTGGTTAATCCTCTTG 59.052 47.826 0.00 0.00 36.69 3.02
5551 17771 3.591527 TGGGTCATGTGGTTAATCCTCTT 59.408 43.478 0.00 0.00 37.07 2.85
5552 17772 3.189606 TGGGTCATGTGGTTAATCCTCT 58.810 45.455 0.00 0.00 37.07 3.69
5578 17798 2.037251 GGAGAGGACAAGCACAGTGTTA 59.963 50.000 1.61 0.00 0.00 2.41
5608 17828 0.251341 ATCGGCCCTTCTTGTTTGCT 60.251 50.000 0.00 0.00 0.00 3.91
5614 17834 2.897350 GCGGATCGGCCCTTCTTG 60.897 66.667 13.99 0.00 0.00 3.02
5648 17868 0.192566 ACTAGTGTGGGTCCAAGGGA 59.807 55.000 0.00 0.00 0.00 4.20
5699 17922 4.514577 CGAGCTAGGCACCGTGGG 62.515 72.222 0.00 0.00 0.00 4.61
5725 17948 3.012934 GTGTACCATAAGGCCACCATT 57.987 47.619 5.01 0.00 39.06 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.