Multiple sequence alignment - TraesCS6A01G042300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G042300 chr6A 100.000 6865 0 0 1 6865 22259290 22266154 0.000000e+00 12678.0
1 TraesCS6A01G042300 chr6A 97.192 997 26 2 4443 5438 564667867 564666872 0.000000e+00 1685.0
2 TraesCS6A01G042300 chr6A 93.375 1132 74 1 5430 6560 22348845 22349976 0.000000e+00 1674.0
3 TraesCS6A01G042300 chr6A 99.766 854 2 0 1 854 22256773 22255920 0.000000e+00 1567.0
4 TraesCS6A01G042300 chr6A 90.100 1202 83 20 855 2033 22346253 22347441 0.000000e+00 1528.0
5 TraesCS6A01G042300 chr6A 88.206 1187 119 9 2789 3962 183930202 183931380 0.000000e+00 1397.0
6 TraesCS6A01G042300 chr6A 87.963 1188 118 11 2789 3962 183313795 183312619 0.000000e+00 1378.0
7 TraesCS6A01G042300 chr6A 92.090 885 47 9 4558 5438 592290137 592291002 0.000000e+00 1225.0
8 TraesCS6A01G042300 chr6A 91.403 884 55 11 4558 5438 514566900 514566035 0.000000e+00 1192.0
9 TraesCS6A01G042300 chr6A 90.340 735 33 16 2085 2785 22347628 22348358 0.000000e+00 929.0
10 TraesCS6A01G042300 chr6A 93.103 435 24 4 4008 4439 22348426 22348857 3.490000e-177 632.0
11 TraesCS6A01G042300 chr6A 98.315 178 3 0 6559 6736 22270719 22270896 5.170000e-81 313.0
12 TraesCS6A01G042300 chr6A 84.444 270 38 4 1305 1572 536434469 536434736 5.280000e-66 263.0
13 TraesCS6A01G042300 chr6A 78.917 351 42 19 2450 2773 536435184 536435529 6.980000e-50 209.0
14 TraesCS6A01G042300 chr7A 95.983 1195 32 5 2789 3967 717768592 717767398 0.000000e+00 1927.0
15 TraesCS6A01G042300 chr7A 87.511 1185 126 15 2789 3960 721642931 721641756 0.000000e+00 1349.0
16 TraesCS6A01G042300 chr7A 91.121 856 54 13 1 849 663780760 663781600 0.000000e+00 1140.0
17 TraesCS6A01G042300 chr7A 87.662 308 37 1 6559 6865 20852142 20851835 2.350000e-94 357.0
18 TraesCS6A01G042300 chr1B 95.696 1185 40 2 2789 3962 145445818 145444634 0.000000e+00 1895.0
19 TraesCS6A01G042300 chr1B 93.973 813 39 7 4447 5255 307477976 307478782 0.000000e+00 1221.0
20 TraesCS6A01G042300 chr1B 96.970 165 2 2 5275 5438 307478769 307478931 2.440000e-69 274.0
21 TraesCS6A01G042300 chr5A 92.191 1191 72 12 2789 3966 31279226 31280408 0.000000e+00 1664.0
22 TraesCS6A01G042300 chr5A 91.132 857 56 10 1 849 38976729 38977573 0.000000e+00 1144.0
23 TraesCS6A01G042300 chr6B 92.410 1133 82 4 5430 6560 38620929 38622059 0.000000e+00 1613.0
24 TraesCS6A01G042300 chr6B 88.000 925 63 21 886 1782 46651852 46650948 0.000000e+00 1050.0
25 TraesCS6A01G042300 chr6B 86.006 979 72 36 855 1811 38617884 38618819 0.000000e+00 989.0
26 TraesCS6A01G042300 chr6B 90.423 710 66 2 5430 6138 46649181 46648473 0.000000e+00 933.0
27 TraesCS6A01G042300 chr6B 79.282 1197 202 35 2789 3962 715762735 715761562 0.000000e+00 795.0
28 TraesCS6A01G042300 chr6B 93.402 485 24 7 3962 4439 46649652 46649169 0.000000e+00 712.0
29 TraesCS6A01G042300 chr6B 93.119 436 25 2 2094 2524 38619690 38620125 9.710000e-178 634.0
30 TraesCS6A01G042300 chr6B 92.308 442 23 6 4006 4439 38620503 38620941 9.780000e-173 617.0
31 TraesCS6A01G042300 chr6B 82.258 620 83 16 5437 6050 584224177 584223579 1.710000e-140 510.0
32 TraesCS6A01G042300 chr6B 86.117 461 37 12 2088 2524 46650495 46650038 8.060000e-129 472.0
33 TraesCS6A01G042300 chr6B 93.993 283 17 0 6278 6560 46626526 46626244 4.920000e-116 429.0
34 TraesCS6A01G042300 chr6B 95.473 243 6 2 2551 2791 38620208 38620447 3.880000e-102 383.0
35 TraesCS6A01G042300 chr6B 88.026 309 33 4 6559 6865 102066017 102065711 5.060000e-96 363.0
36 TraesCS6A01G042300 chr6B 95.305 213 8 1 1821 2033 46650943 46650733 3.070000e-88 337.0
37 TraesCS6A01G042300 chr6B 90.995 211 18 1 1824 2033 38619154 38619364 4.050000e-72 283.0
38 TraesCS6A01G042300 chr6B 94.180 189 5 3 2523 2708 46650008 46649823 4.050000e-72 283.0
39 TraesCS6A01G042300 chr6B 94.375 160 7 2 6130 6289 46627172 46627015 1.910000e-60 244.0
40 TraesCS6A01G042300 chr6B 87.791 172 21 0 2602 2773 584225205 584225034 1.170000e-47 202.0
41 TraesCS6A01G042300 chr6B 97.701 87 2 0 2705 2791 46649748 46649662 4.290000e-32 150.0
42 TraesCS6A01G042300 chr6B 100.000 34 0 0 1643 1676 134665595 134665562 5.750000e-06 63.9
43 TraesCS6A01G042300 chr6D 92.063 1134 74 6 5430 6560 23739353 23740473 0.000000e+00 1581.0
44 TraesCS6A01G042300 chr6D 90.168 1190 91 17 2789 3962 367879272 367878093 0.000000e+00 1526.0
45 TraesCS6A01G042300 chr6D 92.315 1002 39 14 4441 5438 362241622 362240655 0.000000e+00 1389.0
46 TraesCS6A01G042300 chr6D 86.710 933 83 25 878 1790 23736605 23737516 0.000000e+00 998.0
47 TraesCS6A01G042300 chr6D 89.985 689 29 17 2134 2785 23738175 23738860 0.000000e+00 854.0
48 TraesCS6A01G042300 chr6D 91.196 443 27 6 4006 4439 23738926 23739365 5.930000e-165 592.0
49 TraesCS6A01G042300 chr6D 81.558 629 89 17 5429 6050 389983191 389983799 1.720000e-135 494.0
50 TraesCS6A01G042300 chr6D 91.960 199 16 0 1828 2026 23737771 23737969 5.240000e-71 279.0
51 TraesCS6A01G042300 chr6D 88.398 181 19 1 2594 2772 389982492 389982672 4.170000e-52 217.0
52 TraesCS6A01G042300 chr6D 100.000 34 0 0 855 888 23736280 23736313 5.750000e-06 63.9
53 TraesCS6A01G042300 chr3A 99.063 854 8 0 1 854 696590811 696589958 0.000000e+00 1533.0
54 TraesCS6A01G042300 chr3A 91.121 856 54 13 1 849 8701997 8701157 0.000000e+00 1140.0
55 TraesCS6A01G042300 chr3A 95.652 299 11 2 3666 3962 621497550 621497848 4.820000e-131 479.0
56 TraesCS6A01G042300 chr3B 90.989 1132 94 4 5430 6560 745006095 745007219 0.000000e+00 1519.0
57 TraesCS6A01G042300 chr3B 91.238 856 56 11 1 849 463099047 463098204 0.000000e+00 1147.0
58 TraesCS6A01G042300 chr3B 91.841 478 33 5 2052 2524 744977288 744977764 0.000000e+00 662.0
59 TraesCS6A01G042300 chr3B 93.214 280 11 3 4115 4387 744978074 744978352 8.290000e-109 405.0
60 TraesCS6A01G042300 chr3B 88.818 313 25 6 1435 1742 744976314 744976621 6.500000e-100 375.0
61 TraesCS6A01G042300 chr3B 85.714 287 30 8 1109 1387 744976032 744976315 6.730000e-75 292.0
62 TraesCS6A01G042300 chr3B 89.552 201 12 5 2602 2797 744977869 744978065 5.320000e-61 246.0
63 TraesCS6A01G042300 chr3B 95.775 71 3 0 4373 4443 745006041 745006111 1.560000e-21 115.0
64 TraesCS6A01G042300 chr3B 100.000 31 0 0 1644 1674 8036620 8036590 2.670000e-04 58.4
65 TraesCS6A01G042300 chr5D 89.487 1189 102 17 2789 3962 564670885 564672065 0.000000e+00 1482.0
66 TraesCS6A01G042300 chr5D 100.000 32 0 0 1643 1674 396921709 396921678 7.440000e-05 60.2
67 TraesCS6A01G042300 chr5D 97.059 34 1 0 1643 1676 506228548 506228515 2.670000e-04 58.4
68 TraesCS6A01G042300 chr7D 96.491 855 28 2 1 855 175677706 175676854 0.000000e+00 1411.0
69 TraesCS6A01G042300 chr7D 96.257 855 30 2 1 855 175674437 175673585 0.000000e+00 1400.0
70 TraesCS6A01G042300 chr4D 94.730 816 36 5 4444 5255 381404995 381405807 0.000000e+00 1262.0
71 TraesCS6A01G042300 chr4D 96.364 165 5 1 5275 5438 381405794 381405958 3.160000e-68 270.0
72 TraesCS6A01G042300 chr4A 91.686 878 51 8 4558 5432 227099203 227098345 0.000000e+00 1197.0
73 TraesCS6A01G042300 chr2B 91.005 856 58 11 1 849 249367806 249368649 0.000000e+00 1136.0
74 TraesCS6A01G042300 chr2D 93.478 414 22 3 4444 4855 338223638 338223228 1.640000e-170 610.0
75 TraesCS6A01G042300 chr2D 93.462 413 22 3 4444 4854 338241132 338240723 5.890000e-170 608.0
76 TraesCS6A01G042300 chr2D 92.893 394 25 3 4865 5255 338240665 338240272 2.780000e-158 569.0
77 TraesCS6A01G042300 chr2D 92.132 394 28 3 4865 5255 338223171 338222778 2.800000e-153 553.0
78 TraesCS6A01G042300 chr2D 93.506 308 20 0 6558 6865 596192451 596192144 6.270000e-125 459.0
79 TraesCS6A01G042300 chr2D 85.714 308 43 1 6559 6865 484957076 484957383 2.390000e-84 324.0
80 TraesCS6A01G042300 chr2D 93.258 178 12 0 6559 6736 596187575 596187398 5.280000e-66 263.0
81 TraesCS6A01G042300 chr2D 95.152 165 6 2 5275 5438 338206775 338206612 6.830000e-65 259.0
82 TraesCS6A01G042300 chr2D 77.515 169 31 7 4438 4606 616206019 616206180 2.040000e-15 95.3
83 TraesCS6A01G042300 chr5B 88.710 310 32 3 6558 6865 322128730 322128422 6.500000e-100 375.0
84 TraesCS6A01G042300 chr5B 87.742 310 34 4 6558 6865 99740650 99740343 6.550000e-95 359.0
85 TraesCS6A01G042300 chr5B 95.152 165 7 1 5275 5438 392946500 392946336 6.830000e-65 259.0
86 TraesCS6A01G042300 chr5B 75.862 203 34 10 6608 6802 65711719 65711914 9.480000e-14 89.8
87 TraesCS6A01G042300 chr1D 88.372 301 30 2 6559 6854 9475482 9475182 2.350000e-94 357.0
88 TraesCS6A01G042300 chr7B 96.364 165 5 1 5275 5438 742119922 742120086 3.160000e-68 270.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G042300 chr6A 22259290 22266154 6864 False 12678.000000 12678 100.000000 1 6865 1 chr6A.!!$F1 6864
1 TraesCS6A01G042300 chr6A 564666872 564667867 995 True 1685.000000 1685 97.192000 4443 5438 1 chr6A.!!$R4 995
2 TraesCS6A01G042300 chr6A 22255920 22256773 853 True 1567.000000 1567 99.766000 1 854 1 chr6A.!!$R1 853
3 TraesCS6A01G042300 chr6A 183930202 183931380 1178 False 1397.000000 1397 88.206000 2789 3962 1 chr6A.!!$F3 1173
4 TraesCS6A01G042300 chr6A 183312619 183313795 1176 True 1378.000000 1378 87.963000 2789 3962 1 chr6A.!!$R2 1173
5 TraesCS6A01G042300 chr6A 592290137 592291002 865 False 1225.000000 1225 92.090000 4558 5438 1 chr6A.!!$F4 880
6 TraesCS6A01G042300 chr6A 514566035 514566900 865 True 1192.000000 1192 91.403000 4558 5438 1 chr6A.!!$R3 880
7 TraesCS6A01G042300 chr6A 22346253 22349976 3723 False 1190.750000 1674 91.729500 855 6560 4 chr6A.!!$F5 5705
8 TraesCS6A01G042300 chr6A 536434469 536435529 1060 False 236.000000 263 81.680500 1305 2773 2 chr6A.!!$F6 1468
9 TraesCS6A01G042300 chr7A 717767398 717768592 1194 True 1927.000000 1927 95.983000 2789 3967 1 chr7A.!!$R2 1178
10 TraesCS6A01G042300 chr7A 721641756 721642931 1175 True 1349.000000 1349 87.511000 2789 3960 1 chr7A.!!$R3 1171
11 TraesCS6A01G042300 chr7A 663780760 663781600 840 False 1140.000000 1140 91.121000 1 849 1 chr7A.!!$F1 848
12 TraesCS6A01G042300 chr1B 145444634 145445818 1184 True 1895.000000 1895 95.696000 2789 3962 1 chr1B.!!$R1 1173
13 TraesCS6A01G042300 chr1B 307477976 307478931 955 False 747.500000 1221 95.471500 4447 5438 2 chr1B.!!$F1 991
14 TraesCS6A01G042300 chr5A 31279226 31280408 1182 False 1664.000000 1664 92.191000 2789 3966 1 chr5A.!!$F1 1177
15 TraesCS6A01G042300 chr5A 38976729 38977573 844 False 1144.000000 1144 91.132000 1 849 1 chr5A.!!$F2 848
16 TraesCS6A01G042300 chr6B 715761562 715762735 1173 True 795.000000 795 79.282000 2789 3962 1 chr6B.!!$R3 1173
17 TraesCS6A01G042300 chr6B 38617884 38622059 4175 False 753.166667 1613 91.718500 855 6560 6 chr6B.!!$F1 5705
18 TraesCS6A01G042300 chr6B 46648473 46651852 3379 True 562.428571 1050 92.161143 886 6138 7 chr6B.!!$R5 5252
19 TraesCS6A01G042300 chr6B 584223579 584225205 1626 True 356.000000 510 85.024500 2602 6050 2 chr6B.!!$R6 3448
20 TraesCS6A01G042300 chr6B 46626244 46627172 928 True 336.500000 429 94.184000 6130 6560 2 chr6B.!!$R4 430
21 TraesCS6A01G042300 chr6D 367878093 367879272 1179 True 1526.000000 1526 90.168000 2789 3962 1 chr6D.!!$R2 1173
22 TraesCS6A01G042300 chr6D 362240655 362241622 967 True 1389.000000 1389 92.315000 4441 5438 1 chr6D.!!$R1 997
23 TraesCS6A01G042300 chr6D 23736280 23740473 4193 False 727.983333 1581 91.985667 855 6560 6 chr6D.!!$F1 5705
24 TraesCS6A01G042300 chr6D 389982492 389983799 1307 False 355.500000 494 84.978000 2594 6050 2 chr6D.!!$F2 3456
25 TraesCS6A01G042300 chr3A 696589958 696590811 853 True 1533.000000 1533 99.063000 1 854 1 chr3A.!!$R2 853
26 TraesCS6A01G042300 chr3A 8701157 8701997 840 True 1140.000000 1140 91.121000 1 849 1 chr3A.!!$R1 848
27 TraesCS6A01G042300 chr3B 463098204 463099047 843 True 1147.000000 1147 91.238000 1 849 1 chr3B.!!$R2 848
28 TraesCS6A01G042300 chr3B 745006041 745007219 1178 False 817.000000 1519 93.382000 4373 6560 2 chr3B.!!$F2 2187
29 TraesCS6A01G042300 chr3B 744976032 744978352 2320 False 396.000000 662 89.827800 1109 4387 5 chr3B.!!$F1 3278
30 TraesCS6A01G042300 chr5D 564670885 564672065 1180 False 1482.000000 1482 89.487000 2789 3962 1 chr5D.!!$F1 1173
31 TraesCS6A01G042300 chr7D 175673585 175677706 4121 True 1405.500000 1411 96.374000 1 855 2 chr7D.!!$R1 854
32 TraesCS6A01G042300 chr4D 381404995 381405958 963 False 766.000000 1262 95.547000 4444 5438 2 chr4D.!!$F1 994
33 TraesCS6A01G042300 chr4A 227098345 227099203 858 True 1197.000000 1197 91.686000 4558 5432 1 chr4A.!!$R1 874
34 TraesCS6A01G042300 chr2B 249367806 249368649 843 False 1136.000000 1136 91.005000 1 849 1 chr2B.!!$F1 848
35 TraesCS6A01G042300 chr2D 338240272 338241132 860 True 588.500000 608 93.177500 4444 5255 2 chr2D.!!$R5 811
36 TraesCS6A01G042300 chr2D 338222778 338223638 860 True 581.500000 610 92.805000 4444 5255 2 chr2D.!!$R4 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 4588 0.465097 CACACCTCATCTCCATGGCC 60.465 60.000 6.96 0.0 0.00 5.36 F
1152 4750 0.179100 CGTGGATCATTGACGAGGCT 60.179 55.000 0.00 0.0 35.05 4.58 F
2213 6918 0.107214 GAATGGCCGACAATGGAGGA 60.107 55.000 0.00 0.0 0.00 3.71 F
3077 7985 1.885887 GCTGGGTGTAACTGCAAATGA 59.114 47.619 0.00 0.0 36.74 2.57 F
4339 9637 1.134946 ACACAGGTTTGCAGTTGAAGC 59.865 47.619 0.00 0.0 0.00 3.86 F
5261 10627 0.112412 ATTTTTGGAGCGACCTGGGT 59.888 50.000 0.00 0.0 39.86 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 6918 0.246635 GTGAGGCCTATGTCACGTGT 59.753 55.000 16.51 0.0 34.16 4.49 R
2282 6987 1.605058 GCTCGTCCAGCTCCAAGGTA 61.605 60.000 0.00 0.0 45.83 3.08 R
3531 8442 1.483827 CCTCAGCATCTTAGCTCCACA 59.516 52.381 0.00 0.0 44.54 4.17 R
4428 9743 2.158842 GCCTCTGCCTTCATACATGAGT 60.159 50.000 0.00 0.0 38.19 3.41 R
5440 10835 0.620556 GATGCCTCAAGTCCCCTTCA 59.379 55.000 0.00 0.0 0.00 3.02 R
6731 12630 0.108186 TGGTCGCTGATACCAAGCTG 60.108 55.000 0.00 0.0 43.99 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
996 4588 0.465097 CACACCTCATCTCCATGGCC 60.465 60.000 6.96 0.00 0.00 5.36
1143 4741 2.099921 CGACTCCTTCTCGTGGATCATT 59.900 50.000 0.00 0.00 32.56 2.57
1152 4750 0.179100 CGTGGATCATTGACGAGGCT 60.179 55.000 0.00 0.00 35.05 4.58
1240 4868 5.611374 ACAATCCGGTCCATAGTTTCATAG 58.389 41.667 0.00 0.00 0.00 2.23
1241 4869 5.365605 ACAATCCGGTCCATAGTTTCATAGA 59.634 40.000 0.00 0.00 0.00 1.98
1242 4870 6.043243 ACAATCCGGTCCATAGTTTCATAGAT 59.957 38.462 0.00 0.00 0.00 1.98
1243 4871 5.723672 TCCGGTCCATAGTTTCATAGATC 57.276 43.478 0.00 0.00 0.00 2.75
1244 4872 5.144832 TCCGGTCCATAGTTTCATAGATCA 58.855 41.667 0.00 0.00 0.00 2.92
1245 4873 5.780282 TCCGGTCCATAGTTTCATAGATCAT 59.220 40.000 0.00 0.00 0.00 2.45
1246 4874 6.951778 TCCGGTCCATAGTTTCATAGATCATA 59.048 38.462 0.00 0.00 0.00 2.15
1248 4876 7.761704 CCGGTCCATAGTTTCATAGATCATAAG 59.238 40.741 0.00 0.00 0.00 1.73
1249 4877 8.523658 CGGTCCATAGTTTCATAGATCATAAGA 58.476 37.037 0.00 0.00 0.00 2.10
1250 4878 9.646427 GGTCCATAGTTTCATAGATCATAAGAC 57.354 37.037 0.00 0.00 0.00 3.01
1285 4927 3.092403 CGGCGTGACATGACATGG 58.908 61.111 19.39 7.07 33.60 3.66
1462 5105 4.162690 GGGTTCAGGCCGATCGCT 62.163 66.667 10.32 0.00 37.74 4.93
1634 5284 7.299246 ACTTCTGGAGTAGTAGCTGTTTTTA 57.701 36.000 0.00 0.00 36.65 1.52
1639 5289 8.594550 TCTGGAGTAGTAGCTGTTTTTATCTTT 58.405 33.333 0.00 0.00 0.00 2.52
1647 5300 9.569122 AGTAGCTGTTTTTATCTTTAGGTTTGA 57.431 29.630 0.00 0.00 0.00 2.69
1665 5318 5.757808 GGTTTGAATTGCTTACCACATGTTT 59.242 36.000 0.00 0.00 0.00 2.83
1740 5401 9.665719 TGTAGTTATCATTTTGCAGTATCTTGA 57.334 29.630 0.00 0.00 0.00 3.02
1755 5416 7.794349 GCAGTATCTTGATACAATCTTTAACGC 59.206 37.037 19.15 5.73 0.00 4.84
1769 5431 9.743057 CAATCTTTAACGCCCAAAAATATATGA 57.257 29.630 0.00 0.00 0.00 2.15
1802 5519 9.674068 TCGTATGTTGCTATCTATCTATTCTCT 57.326 33.333 0.00 0.00 0.00 3.10
1889 5886 1.524621 CACCCGCTCATCCATGTCC 60.525 63.158 0.00 0.00 0.00 4.02
1893 5890 0.395686 CCGCTCATCCATGTCCATCT 59.604 55.000 0.00 0.00 0.00 2.90
2213 6918 0.107214 GAATGGCCGACAATGGAGGA 60.107 55.000 0.00 0.00 0.00 3.71
2215 6920 2.220586 TGGCCGACAATGGAGGACA 61.221 57.895 0.00 0.68 41.51 4.02
2282 6987 8.814235 CGAAAGGATTTATGAGTGTAAATACGT 58.186 33.333 0.00 0.00 39.27 3.57
2287 6992 9.538508 GGATTTATGAGTGTAAATACGTACCTT 57.461 33.333 0.00 0.00 35.12 3.50
2363 7083 4.516359 CGTCGATTTCGGTAAACAAAACA 58.484 39.130 0.00 0.00 40.29 2.83
2549 7333 8.034215 CCTCCATTCTAGAATTAGCTACATCAG 58.966 40.741 15.49 0.18 0.00 2.90
2562 7375 4.281941 AGCTACATCAGAATTGGCGATCTA 59.718 41.667 0.00 0.00 0.00 1.98
2811 7706 4.545208 TTGTATCGATGGTGAAACTCCA 57.455 40.909 8.54 0.00 39.41 3.86
3070 7978 1.981256 AACTTGGCTGGGTGTAACTG 58.019 50.000 0.00 0.00 36.74 3.16
3077 7985 1.885887 GCTGGGTGTAACTGCAAATGA 59.114 47.619 0.00 0.00 36.74 2.57
3223 8133 3.381590 TGTGATAACAGAGAGACATCCCG 59.618 47.826 0.00 0.00 0.00 5.14
3531 8442 3.265791 GAAGATCGTGAAGCAATGGAGT 58.734 45.455 0.00 0.00 0.00 3.85
3737 8652 2.093500 TGGTATTCAGCTCTTGCGTGAT 60.093 45.455 0.00 0.00 45.42 3.06
3762 8679 6.642131 TCATAAAACTTTGATCAGCTTGTTGC 59.358 34.615 0.00 0.00 43.29 4.17
3917 8837 6.915843 GGGTAGTTGTTGAACTGTTGTATTTG 59.084 38.462 0.00 0.00 42.66 2.32
4075 9357 1.942657 GCTGCTGCGAATAAGATTGGA 59.057 47.619 0.00 0.00 0.00 3.53
4150 9432 1.350684 TGGCTTACTGATGCAGGTGAA 59.649 47.619 0.00 0.00 35.51 3.18
4233 9526 3.052455 TGTGCATCGGTGTGACTAATT 57.948 42.857 0.00 0.00 0.00 1.40
4339 9637 1.134946 ACACAGGTTTGCAGTTGAAGC 59.865 47.619 0.00 0.00 0.00 3.86
4371 9677 2.080654 TCCAAGTTGGAACCCAAAGG 57.919 50.000 22.59 3.86 45.00 3.11
4428 9743 3.448093 TGGTCAATGGCTAAATCACCA 57.552 42.857 0.00 0.00 41.06 4.17
4439 9754 5.104569 TGGCTAAATCACCACTCATGTATGA 60.105 40.000 0.00 0.00 35.16 2.15
4523 9838 7.716799 AATGCCAAATATCACAACCTAAAGA 57.283 32.000 0.00 0.00 0.00 2.52
4923 10288 7.075741 ACAAAGAACGACGGAATAAAATTGAG 58.924 34.615 0.00 0.00 0.00 3.02
5255 10621 0.179189 CTGGCGATTTTTGGAGCGAC 60.179 55.000 0.00 0.00 0.00 5.19
5261 10627 0.112412 ATTTTTGGAGCGACCTGGGT 59.888 50.000 0.00 0.00 39.86 4.51
5439 10834 3.006728 CCCAGTTCCGCCCCTGTA 61.007 66.667 0.00 0.00 0.00 2.74
5440 10835 2.375345 CCCAGTTCCGCCCCTGTAT 61.375 63.158 0.00 0.00 0.00 2.29
5441 10836 1.153168 CCAGTTCCGCCCCTGTATG 60.153 63.158 0.00 0.00 0.00 2.39
5442 10837 1.622607 CCAGTTCCGCCCCTGTATGA 61.623 60.000 0.00 0.00 0.00 2.15
5461 10856 3.111265 AGGGGACTTGAGGCATCTT 57.889 52.632 0.00 0.00 37.44 2.40
5562 10960 8.265764 GGTGAACTAAATATTAGTTGGAGTCCT 58.734 37.037 17.56 0.00 37.83 3.85
5581 10979 1.738350 CTGAGATTCCTGCTGCAACAG 59.262 52.381 10.25 10.25 37.42 3.16
5744 11142 0.973632 TTGGTCTCGGTACATGCAGT 59.026 50.000 0.00 0.00 0.00 4.40
5749 11147 3.551046 GGTCTCGGTACATGCAGTGATAG 60.551 52.174 0.00 0.00 0.00 2.08
5813 11211 3.563390 GCAGAAGCTATGGAATCCAGAAC 59.437 47.826 8.40 0.00 35.60 3.01
5822 11220 0.810648 GAATCCAGAACGGCAATGCA 59.189 50.000 7.79 0.00 33.14 3.96
5828 11226 2.456989 CAGAACGGCAATGCATCATTC 58.543 47.619 7.79 4.83 31.05 2.67
5843 11241 4.473199 CATCATTCTGCATATCCAAAGCG 58.527 43.478 0.00 0.00 0.00 4.68
5852 11250 4.142622 TGCATATCCAAAGCGAAACTTCTG 60.143 41.667 0.00 0.00 37.75 3.02
5870 11268 0.958382 TGCCAACATCGTAAGTGCCC 60.958 55.000 0.00 0.00 39.48 5.36
5871 11269 0.958382 GCCAACATCGTAAGTGCCCA 60.958 55.000 0.00 0.00 39.48 5.36
5880 11278 0.517316 GTAAGTGCCCAGCGACAAAG 59.483 55.000 0.00 0.00 0.00 2.77
5881 11279 0.107831 TAAGTGCCCAGCGACAAAGT 59.892 50.000 0.00 0.00 0.00 2.66
5894 11292 6.373779 CAGCGACAAAGTAATTCATGAAAGT 58.626 36.000 13.09 6.24 0.00 2.66
5951 11350 8.929487 TGACCCACACATATTATGTTATACAGA 58.071 33.333 6.58 0.00 42.70 3.41
5983 11382 1.064166 CATGAGCAATGGGGAAGACCT 60.064 52.381 0.00 0.00 40.03 3.85
5997 11396 4.767409 GGGAAGACCTAGCAAAGTTTCATT 59.233 41.667 0.00 0.00 35.85 2.57
6021 11420 4.411869 TGGCAGGTATTGACAATGAGGATA 59.588 41.667 11.05 0.00 43.52 2.59
6022 11421 5.104151 TGGCAGGTATTGACAATGAGGATAA 60.104 40.000 11.05 0.00 43.52 1.75
6064 11463 1.651240 CCATGGCGAACAAGCTCAGG 61.651 60.000 0.00 0.00 37.29 3.86
6560 12459 1.621814 AGCATGCTTCTTTGCCAATGT 59.378 42.857 16.30 0.00 39.72 2.71
6561 12460 2.038033 AGCATGCTTCTTTGCCAATGTT 59.962 40.909 16.30 0.00 39.72 2.71
6562 12461 3.258872 AGCATGCTTCTTTGCCAATGTTA 59.741 39.130 16.30 0.00 39.72 2.41
6563 12462 3.995705 GCATGCTTCTTTGCCAATGTTAA 59.004 39.130 11.37 0.00 32.66 2.01
6564 12463 4.143052 GCATGCTTCTTTGCCAATGTTAAC 60.143 41.667 11.37 0.00 32.66 2.01
6565 12464 4.662468 TGCTTCTTTGCCAATGTTAACA 57.338 36.364 11.41 11.41 0.00 2.41
6566 12465 4.367450 TGCTTCTTTGCCAATGTTAACAC 58.633 39.130 11.22 0.00 0.00 3.32
6567 12466 3.425193 GCTTCTTTGCCAATGTTAACACG 59.575 43.478 11.22 5.15 0.00 4.49
6568 12467 4.606961 CTTCTTTGCCAATGTTAACACGT 58.393 39.130 11.22 0.00 0.00 4.49
6569 12468 4.640789 TCTTTGCCAATGTTAACACGTT 57.359 36.364 11.22 0.00 31.78 3.99
6570 12469 4.355437 TCTTTGCCAATGTTAACACGTTG 58.645 39.130 11.22 12.26 45.97 4.10
6571 12470 3.784701 TTGCCAATGTTAACACGTTGT 57.215 38.095 11.22 0.00 45.24 3.32
6572 12471 4.895224 TTGCCAATGTTAACACGTTGTA 57.105 36.364 11.22 1.83 45.24 2.41
6573 12472 5.440234 TTGCCAATGTTAACACGTTGTAT 57.560 34.783 11.22 0.00 45.24 2.29
6574 12473 6.555812 TTGCCAATGTTAACACGTTGTATA 57.444 33.333 11.22 0.00 45.24 1.47
6575 12474 5.929278 TGCCAATGTTAACACGTTGTATAC 58.071 37.500 11.22 0.00 45.24 1.47
6576 12475 5.106634 TGCCAATGTTAACACGTTGTATACC 60.107 40.000 11.22 0.18 45.24 2.73
6577 12476 5.122711 GCCAATGTTAACACGTTGTATACCT 59.877 40.000 11.22 0.00 45.24 3.08
6578 12477 6.539324 CCAATGTTAACACGTTGTATACCTG 58.461 40.000 11.22 0.00 45.24 4.00
6579 12478 6.148150 CCAATGTTAACACGTTGTATACCTGT 59.852 38.462 11.22 0.00 45.24 4.00
6580 12479 6.715344 ATGTTAACACGTTGTATACCTGTG 57.285 37.500 11.22 14.23 36.64 3.66
6581 12480 5.599732 TGTTAACACGTTGTATACCTGTGT 58.400 37.500 15.22 15.22 45.01 3.72
6582 12481 6.743110 TGTTAACACGTTGTATACCTGTGTA 58.257 36.000 19.08 7.58 42.50 2.90
6583 12482 7.377398 TGTTAACACGTTGTATACCTGTGTAT 58.623 34.615 19.08 13.74 42.50 2.29
6584 12483 7.328982 TGTTAACACGTTGTATACCTGTGTATG 59.671 37.037 19.08 5.19 42.50 2.39
6585 12484 5.395682 ACACGTTGTATACCTGTGTATGT 57.604 39.130 17.96 4.85 41.61 2.29
6586 12485 6.513806 ACACGTTGTATACCTGTGTATGTA 57.486 37.500 17.96 0.00 41.61 2.29
6587 12486 6.324819 ACACGTTGTATACCTGTGTATGTAC 58.675 40.000 17.96 0.00 41.61 2.90
6588 12487 6.072008 ACACGTTGTATACCTGTGTATGTACA 60.072 38.462 17.96 0.00 41.61 2.90
6589 12488 6.976349 CACGTTGTATACCTGTGTATGTACAT 59.024 38.462 13.93 13.93 38.17 2.29
6590 12489 6.976349 ACGTTGTATACCTGTGTATGTACATG 59.024 38.462 18.81 2.87 38.17 3.21
6591 12490 6.976349 CGTTGTATACCTGTGTATGTACATGT 59.024 38.462 18.81 2.69 38.17 3.21
6592 12491 8.130469 CGTTGTATACCTGTGTATGTACATGTA 58.870 37.037 18.81 10.74 38.17 2.29
6593 12492 9.976511 GTTGTATACCTGTGTATGTACATGTAT 57.023 33.333 18.81 16.41 41.78 2.29
6600 12499 9.899661 ACCTGTGTATGTACATGTATTTGTATT 57.100 29.630 18.81 0.00 38.63 1.89
6621 12520 9.392506 TGTATTCCTAAAGAATAGGATCATGGA 57.607 33.333 5.12 0.00 45.93 3.41
6624 12523 8.510358 TTCCTAAAGAATAGGATCATGGATCA 57.490 34.615 5.12 0.00 42.74 2.92
6625 12524 7.911651 TCCTAAAGAATAGGATCATGGATCAC 58.088 38.462 8.35 0.00 40.50 3.06
6626 12525 6.815641 CCTAAAGAATAGGATCATGGATCACG 59.184 42.308 8.35 0.00 40.50 4.35
6627 12526 4.199432 AGAATAGGATCATGGATCACGC 57.801 45.455 8.35 0.00 40.50 5.34
6628 12527 3.055530 AGAATAGGATCATGGATCACGCC 60.056 47.826 8.35 0.00 40.50 5.68
6629 12528 0.976641 TAGGATCATGGATCACGCCC 59.023 55.000 8.35 0.00 40.50 6.13
6630 12529 1.669115 GGATCATGGATCACGCCCG 60.669 63.158 8.35 0.00 40.50 6.13
6631 12530 1.669115 GATCATGGATCACGCCCGG 60.669 63.158 0.00 0.00 38.77 5.73
6632 12531 3.182590 ATCATGGATCACGCCCGGG 62.183 63.158 19.09 19.09 0.00 5.73
6650 12549 2.360350 CCTGCGTGCCACTTCCAT 60.360 61.111 0.00 0.00 0.00 3.41
6651 12550 2.401766 CCTGCGTGCCACTTCCATC 61.402 63.158 0.00 0.00 0.00 3.51
6652 12551 1.672030 CTGCGTGCCACTTCCATCA 60.672 57.895 0.00 0.00 0.00 3.07
6653 12552 1.642037 CTGCGTGCCACTTCCATCAG 61.642 60.000 0.00 0.00 0.00 2.90
6654 12553 2.401766 GCGTGCCACTTCCATCAGG 61.402 63.158 0.00 0.00 0.00 3.86
6657 12556 3.915575 GCCACTTCCATCAGGCTG 58.084 61.111 8.58 8.58 43.70 4.85
6658 12557 1.001641 GCCACTTCCATCAGGCTGT 60.002 57.895 15.27 0.00 43.70 4.40
6659 12558 0.610232 GCCACTTCCATCAGGCTGTT 60.610 55.000 15.27 2.76 43.70 3.16
6660 12559 1.915141 CCACTTCCATCAGGCTGTTT 58.085 50.000 15.27 0.24 33.74 2.83
6661 12560 1.542915 CCACTTCCATCAGGCTGTTTG 59.457 52.381 15.27 13.05 33.74 2.93
6662 12561 2.233271 CACTTCCATCAGGCTGTTTGT 58.767 47.619 15.27 3.76 33.74 2.83
6663 12562 2.624838 CACTTCCATCAGGCTGTTTGTT 59.375 45.455 15.27 0.00 33.74 2.83
6664 12563 2.624838 ACTTCCATCAGGCTGTTTGTTG 59.375 45.455 15.27 5.89 33.74 3.33
6665 12564 2.363306 TCCATCAGGCTGTTTGTTGT 57.637 45.000 15.27 0.00 33.74 3.32
6666 12565 3.500448 TCCATCAGGCTGTTTGTTGTA 57.500 42.857 15.27 0.00 33.74 2.41
6667 12566 3.826524 TCCATCAGGCTGTTTGTTGTAA 58.173 40.909 15.27 0.00 33.74 2.41
6668 12567 3.568007 TCCATCAGGCTGTTTGTTGTAAC 59.432 43.478 15.27 0.00 33.74 2.50
6669 12568 3.569701 CCATCAGGCTGTTTGTTGTAACT 59.430 43.478 15.27 0.00 0.00 2.24
6670 12569 4.037923 CCATCAGGCTGTTTGTTGTAACTT 59.962 41.667 15.27 0.00 0.00 2.66
6671 12570 4.893424 TCAGGCTGTTTGTTGTAACTTC 57.107 40.909 15.27 0.00 0.00 3.01
6672 12571 3.630312 TCAGGCTGTTTGTTGTAACTTCC 59.370 43.478 15.27 0.00 0.00 3.46
6673 12572 2.956333 AGGCTGTTTGTTGTAACTTCCC 59.044 45.455 0.00 0.00 0.00 3.97
6674 12573 2.287368 GGCTGTTTGTTGTAACTTCCCG 60.287 50.000 0.00 0.00 0.00 5.14
6675 12574 2.356695 GCTGTTTGTTGTAACTTCCCGT 59.643 45.455 0.00 0.00 0.00 5.28
6676 12575 3.790789 GCTGTTTGTTGTAACTTCCCGTG 60.791 47.826 0.00 0.00 0.00 4.94
6677 12576 3.345414 TGTTTGTTGTAACTTCCCGTGT 58.655 40.909 0.00 0.00 0.00 4.49
6678 12577 4.511527 TGTTTGTTGTAACTTCCCGTGTA 58.488 39.130 0.00 0.00 0.00 2.90
6679 12578 5.124645 TGTTTGTTGTAACTTCCCGTGTAT 58.875 37.500 0.00 0.00 0.00 2.29
6680 12579 6.286758 TGTTTGTTGTAACTTCCCGTGTATA 58.713 36.000 0.00 0.00 0.00 1.47
6681 12580 6.935771 TGTTTGTTGTAACTTCCCGTGTATAT 59.064 34.615 0.00 0.00 0.00 0.86
6682 12581 7.118101 TGTTTGTTGTAACTTCCCGTGTATATC 59.882 37.037 0.00 0.00 0.00 1.63
6683 12582 6.534475 TGTTGTAACTTCCCGTGTATATCT 57.466 37.500 0.00 0.00 0.00 1.98
6684 12583 6.938507 TGTTGTAACTTCCCGTGTATATCTT 58.061 36.000 0.00 0.00 0.00 2.40
6685 12584 8.065473 TGTTGTAACTTCCCGTGTATATCTTA 57.935 34.615 0.00 0.00 0.00 2.10
6686 12585 8.698210 TGTTGTAACTTCCCGTGTATATCTTAT 58.302 33.333 0.00 0.00 0.00 1.73
6687 12586 8.975439 GTTGTAACTTCCCGTGTATATCTTATG 58.025 37.037 0.00 0.00 0.00 1.90
6688 12587 8.467963 TGTAACTTCCCGTGTATATCTTATGA 57.532 34.615 0.00 0.00 0.00 2.15
6689 12588 8.355169 TGTAACTTCCCGTGTATATCTTATGAC 58.645 37.037 0.00 0.00 0.00 3.06
6690 12589 6.342338 ACTTCCCGTGTATATCTTATGACC 57.658 41.667 0.00 0.00 0.00 4.02
6691 12590 5.048224 ACTTCCCGTGTATATCTTATGACCG 60.048 44.000 0.00 0.00 0.00 4.79
6692 12591 4.401022 TCCCGTGTATATCTTATGACCGT 58.599 43.478 0.00 0.00 0.00 4.83
6693 12592 4.216902 TCCCGTGTATATCTTATGACCGTG 59.783 45.833 0.00 0.00 0.00 4.94
6694 12593 4.022589 CCCGTGTATATCTTATGACCGTGT 60.023 45.833 0.00 0.00 0.00 4.49
6695 12594 4.915667 CCGTGTATATCTTATGACCGTGTG 59.084 45.833 0.00 0.00 0.00 3.82
6696 12595 4.915667 CGTGTATATCTTATGACCGTGTGG 59.084 45.833 0.00 0.00 42.84 4.17
6697 12596 5.227908 GTGTATATCTTATGACCGTGTGGG 58.772 45.833 0.00 0.00 40.75 4.61
6708 12607 1.604604 CCGTGTGGGTGAATGAAACT 58.395 50.000 0.00 0.00 0.00 2.66
6709 12608 1.535462 CCGTGTGGGTGAATGAAACTC 59.465 52.381 0.00 0.00 0.00 3.01
6710 12609 2.217750 CGTGTGGGTGAATGAAACTCA 58.782 47.619 0.00 0.00 0.00 3.41
6711 12610 2.813754 CGTGTGGGTGAATGAAACTCAT 59.186 45.455 0.00 0.00 39.09 2.90
6712 12611 4.000325 CGTGTGGGTGAATGAAACTCATA 59.000 43.478 0.00 0.00 35.76 2.15
6713 12612 4.142902 CGTGTGGGTGAATGAAACTCATAC 60.143 45.833 0.00 0.00 35.76 2.39
6714 12613 4.759693 GTGTGGGTGAATGAAACTCATACA 59.240 41.667 0.00 0.00 35.76 2.29
6715 12614 5.003160 TGTGGGTGAATGAAACTCATACAG 58.997 41.667 0.00 0.00 35.76 2.74
6716 12615 5.003804 GTGGGTGAATGAAACTCATACAGT 58.996 41.667 0.00 0.00 35.76 3.55
6717 12616 5.003160 TGGGTGAATGAAACTCATACAGTG 58.997 41.667 0.00 0.00 35.76 3.66
6718 12617 4.142600 GGGTGAATGAAACTCATACAGTGC 60.143 45.833 0.00 0.00 35.76 4.40
6719 12618 4.455533 GGTGAATGAAACTCATACAGTGCA 59.544 41.667 0.00 0.00 35.76 4.57
6720 12619 5.391310 GGTGAATGAAACTCATACAGTGCAG 60.391 44.000 0.00 0.00 35.76 4.41
6721 12620 5.180117 GTGAATGAAACTCATACAGTGCAGT 59.820 40.000 0.00 0.00 35.76 4.40
6722 12621 5.764686 TGAATGAAACTCATACAGTGCAGTT 59.235 36.000 0.00 0.00 35.76 3.16
6723 12622 5.869753 ATGAAACTCATACAGTGCAGTTC 57.130 39.130 0.00 0.00 34.88 3.01
6724 12623 4.960938 TGAAACTCATACAGTGCAGTTCT 58.039 39.130 0.00 0.00 34.56 3.01
6725 12624 6.096673 TGAAACTCATACAGTGCAGTTCTA 57.903 37.500 0.00 0.00 34.56 2.10
6726 12625 6.701340 TGAAACTCATACAGTGCAGTTCTAT 58.299 36.000 0.00 0.00 34.56 1.98
6727 12626 6.813649 TGAAACTCATACAGTGCAGTTCTATC 59.186 38.462 0.00 0.00 34.56 2.08
6728 12627 4.926244 ACTCATACAGTGCAGTTCTATCG 58.074 43.478 0.00 0.00 32.26 2.92
6729 12628 4.399618 ACTCATACAGTGCAGTTCTATCGT 59.600 41.667 0.00 0.00 32.26 3.73
6730 12629 4.921547 TCATACAGTGCAGTTCTATCGTC 58.078 43.478 0.00 0.00 0.00 4.20
6731 12630 2.656560 ACAGTGCAGTTCTATCGTCC 57.343 50.000 0.00 0.00 0.00 4.79
6732 12631 1.893137 ACAGTGCAGTTCTATCGTCCA 59.107 47.619 0.00 0.00 0.00 4.02
6733 12632 2.094494 ACAGTGCAGTTCTATCGTCCAG 60.094 50.000 0.00 0.00 0.00 3.86
6734 12633 1.134965 AGTGCAGTTCTATCGTCCAGC 60.135 52.381 0.00 0.00 0.00 4.85
6735 12634 1.134965 GTGCAGTTCTATCGTCCAGCT 60.135 52.381 0.00 0.00 0.00 4.24
6736 12635 1.550524 TGCAGTTCTATCGTCCAGCTT 59.449 47.619 0.00 0.00 0.00 3.74
6737 12636 1.929836 GCAGTTCTATCGTCCAGCTTG 59.070 52.381 0.00 0.00 0.00 4.01
6738 12637 2.544685 CAGTTCTATCGTCCAGCTTGG 58.455 52.381 0.00 0.00 39.43 3.61
6739 12638 2.093973 CAGTTCTATCGTCCAGCTTGGT 60.094 50.000 0.00 0.00 39.03 3.67
6740 12639 3.130516 CAGTTCTATCGTCCAGCTTGGTA 59.869 47.826 0.00 0.00 39.03 3.25
6741 12640 3.961408 AGTTCTATCGTCCAGCTTGGTAT 59.039 43.478 0.00 0.00 39.03 2.73
6742 12641 4.038162 AGTTCTATCGTCCAGCTTGGTATC 59.962 45.833 0.00 0.00 39.03 2.24
6743 12642 3.562182 TCTATCGTCCAGCTTGGTATCA 58.438 45.455 0.00 0.00 39.03 2.15
6744 12643 2.898729 ATCGTCCAGCTTGGTATCAG 57.101 50.000 0.00 0.00 39.03 2.90
6745 12644 0.175760 TCGTCCAGCTTGGTATCAGC 59.824 55.000 0.00 0.00 39.03 4.26
6746 12645 1.148157 CGTCCAGCTTGGTATCAGCG 61.148 60.000 0.00 0.00 39.03 5.18
6747 12646 0.175760 GTCCAGCTTGGTATCAGCGA 59.824 55.000 0.00 0.00 39.03 4.93
6748 12647 0.175760 TCCAGCTTGGTATCAGCGAC 59.824 55.000 0.00 0.00 39.03 5.19
6749 12648 0.811616 CCAGCTTGGTATCAGCGACC 60.812 60.000 0.00 0.00 37.49 4.79
6750 12649 0.108186 CAGCTTGGTATCAGCGACCA 60.108 55.000 0.00 0.00 45.38 4.02
6753 12652 4.453454 TGGTATCAGCGACCAGGT 57.547 55.556 0.00 0.00 42.15 4.00
6754 12653 2.199117 TGGTATCAGCGACCAGGTC 58.801 57.895 9.92 9.92 42.15 3.85
6755 12654 1.327690 TGGTATCAGCGACCAGGTCC 61.328 60.000 14.46 6.97 42.15 4.46
6756 12655 1.442148 GTATCAGCGACCAGGTCCC 59.558 63.158 14.46 4.91 0.00 4.46
6757 12656 1.043673 GTATCAGCGACCAGGTCCCT 61.044 60.000 14.46 7.56 0.00 4.20
6758 12657 0.325296 TATCAGCGACCAGGTCCCTT 60.325 55.000 14.46 0.00 0.00 3.95
6759 12658 1.617947 ATCAGCGACCAGGTCCCTTC 61.618 60.000 14.46 1.14 0.00 3.46
6760 12659 3.003763 AGCGACCAGGTCCCTTCC 61.004 66.667 14.46 0.00 0.00 3.46
6761 12660 3.319198 GCGACCAGGTCCCTTCCA 61.319 66.667 14.46 0.00 0.00 3.53
6762 12661 2.670148 GCGACCAGGTCCCTTCCAT 61.670 63.158 14.46 0.00 0.00 3.41
6763 12662 1.221840 CGACCAGGTCCCTTCCATG 59.778 63.158 14.46 0.00 0.00 3.66
6764 12663 1.609783 GACCAGGTCCCTTCCATGG 59.390 63.158 8.65 4.97 34.38 3.66
6765 12664 2.276740 CCAGGTCCCTTCCATGGC 59.723 66.667 6.96 0.00 0.00 4.40
6766 12665 2.311854 CCAGGTCCCTTCCATGGCT 61.312 63.158 6.96 0.00 0.00 4.75
6767 12666 1.225704 CAGGTCCCTTCCATGGCTC 59.774 63.158 6.96 0.00 0.00 4.70
6768 12667 2.003548 AGGTCCCTTCCATGGCTCC 61.004 63.158 6.96 2.93 0.00 4.70
6769 12668 2.190578 GTCCCTTCCATGGCTCCG 59.809 66.667 6.96 0.00 0.00 4.63
6770 12669 3.089874 TCCCTTCCATGGCTCCGG 61.090 66.667 6.96 0.00 0.00 5.14
6771 12670 3.089874 CCCTTCCATGGCTCCGGA 61.090 66.667 6.96 2.93 0.00 5.14
6772 12671 2.190578 CCTTCCATGGCTCCGGAC 59.809 66.667 6.96 0.00 0.00 4.79
6773 12672 2.370445 CCTTCCATGGCTCCGGACT 61.370 63.158 6.96 0.00 0.00 3.85
6774 12673 1.144936 CTTCCATGGCTCCGGACTC 59.855 63.158 6.96 0.00 0.00 3.36
6775 12674 2.317149 CTTCCATGGCTCCGGACTCC 62.317 65.000 6.96 5.42 0.00 3.85
6776 12675 3.083349 CCATGGCTCCGGACTCCA 61.083 66.667 19.72 19.72 0.00 3.86
6777 12676 2.187946 CATGGCTCCGGACTCCAC 59.812 66.667 19.81 1.66 31.94 4.02
6778 12677 3.083997 ATGGCTCCGGACTCCACC 61.084 66.667 19.81 8.85 31.94 4.61
6779 12678 3.625632 ATGGCTCCGGACTCCACCT 62.626 63.158 19.81 5.73 31.94 4.00
6780 12679 3.462678 GGCTCCGGACTCCACCTC 61.463 72.222 0.00 0.00 0.00 3.85
6781 12680 3.462678 GCTCCGGACTCCACCTCC 61.463 72.222 0.00 0.00 0.00 4.30
6782 12681 2.360980 CTCCGGACTCCACCTCCT 59.639 66.667 0.00 0.00 0.00 3.69
6783 12682 1.755008 CTCCGGACTCCACCTCCTC 60.755 68.421 0.00 0.00 0.00 3.71
6784 12683 2.760385 CCGGACTCCACCTCCTCC 60.760 72.222 0.00 0.00 0.00 4.30
6785 12684 3.141488 CGGACTCCACCTCCTCCG 61.141 72.222 0.00 0.00 39.78 4.63
6786 12685 3.462678 GGACTCCACCTCCTCCGC 61.463 72.222 0.00 0.00 0.00 5.54
6787 12686 3.462678 GACTCCACCTCCTCCGCC 61.463 72.222 0.00 0.00 0.00 6.13
6788 12687 4.316823 ACTCCACCTCCTCCGCCA 62.317 66.667 0.00 0.00 0.00 5.69
6789 12688 3.775654 CTCCACCTCCTCCGCCAC 61.776 72.222 0.00 0.00 0.00 5.01
6790 12689 4.316823 TCCACCTCCTCCGCCACT 62.317 66.667 0.00 0.00 0.00 4.00
6791 12690 3.322466 CCACCTCCTCCGCCACTT 61.322 66.667 0.00 0.00 0.00 3.16
6792 12691 2.266055 CACCTCCTCCGCCACTTC 59.734 66.667 0.00 0.00 0.00 3.01
6793 12692 2.120718 ACCTCCTCCGCCACTTCT 59.879 61.111 0.00 0.00 0.00 2.85
6794 12693 1.985116 ACCTCCTCCGCCACTTCTC 60.985 63.158 0.00 0.00 0.00 2.87
6795 12694 2.726351 CCTCCTCCGCCACTTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
6796 12695 3.068691 TCCTCCGCCACTTCTCCG 61.069 66.667 0.00 0.00 0.00 4.63
6797 12696 4.148825 CCTCCGCCACTTCTCCGG 62.149 72.222 0.00 0.00 43.21 5.14
6798 12697 4.821589 CTCCGCCACTTCTCCGGC 62.822 72.222 0.00 0.00 45.28 6.13
6803 12702 3.322466 CCACTTCTCCGGCCACCT 61.322 66.667 2.24 0.00 0.00 4.00
6804 12703 2.266055 CACTTCTCCGGCCACCTC 59.734 66.667 2.24 0.00 0.00 3.85
6805 12704 3.382832 ACTTCTCCGGCCACCTCG 61.383 66.667 2.24 0.00 0.00 4.63
6806 12705 4.821589 CTTCTCCGGCCACCTCGC 62.822 72.222 2.24 0.00 0.00 5.03
6819 12718 4.840005 CTCGCCGGGCTCCCTTTC 62.840 72.222 18.34 0.00 0.00 2.62
6822 12721 4.491409 GCCGGGCTCCCTTTCCTC 62.491 72.222 12.87 0.00 0.00 3.71
6823 12722 4.162690 CCGGGCTCCCTTTCCTCG 62.163 72.222 3.11 0.00 0.00 4.63
6824 12723 3.075005 CGGGCTCCCTTTCCTCGA 61.075 66.667 3.11 0.00 0.00 4.04
6825 12724 2.585153 GGGCTCCCTTTCCTCGAC 59.415 66.667 0.00 0.00 0.00 4.20
6826 12725 2.585153 GGCTCCCTTTCCTCGACC 59.415 66.667 0.00 0.00 0.00 4.79
6827 12726 2.291043 GGCTCCCTTTCCTCGACCA 61.291 63.158 0.00 0.00 0.00 4.02
6828 12727 1.079057 GCTCCCTTTCCTCGACCAC 60.079 63.158 0.00 0.00 0.00 4.16
6829 12728 1.597461 CTCCCTTTCCTCGACCACC 59.403 63.158 0.00 0.00 0.00 4.61
6830 12729 1.152204 TCCCTTTCCTCGACCACCA 60.152 57.895 0.00 0.00 0.00 4.17
6831 12730 1.192146 TCCCTTTCCTCGACCACCAG 61.192 60.000 0.00 0.00 0.00 4.00
6832 12731 1.376037 CCTTTCCTCGACCACCAGC 60.376 63.158 0.00 0.00 0.00 4.85
6833 12732 1.376037 CTTTCCTCGACCACCAGCC 60.376 63.158 0.00 0.00 0.00 4.85
6834 12733 1.831652 CTTTCCTCGACCACCAGCCT 61.832 60.000 0.00 0.00 0.00 4.58
6835 12734 2.111999 TTTCCTCGACCACCAGCCTG 62.112 60.000 0.00 0.00 0.00 4.85
6836 12735 4.087892 CCTCGACCACCAGCCTGG 62.088 72.222 9.83 9.83 45.02 4.45
6837 12736 4.767255 CTCGACCACCAGCCTGGC 62.767 72.222 11.63 11.65 42.67 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1018 4610 0.457851 CAGATCAGGGACGTGAGGAC 59.542 60.000 0.00 0.00 0.00 3.85
1143 4741 3.282745 GAGGAACGCAGCCTCGTCA 62.283 63.158 1.23 0.00 42.22 4.35
1257 4896 1.227409 TCACGCCGCAACAGAGAAA 60.227 52.632 0.00 0.00 0.00 2.52
1259 4898 2.355837 GTCACGCCGCAACAGAGA 60.356 61.111 0.00 0.00 0.00 3.10
1260 4899 2.029288 ATGTCACGCCGCAACAGAG 61.029 57.895 0.00 0.00 0.00 3.35
1265 4904 1.670730 ATGTCATGTCACGCCGCAA 60.671 52.632 0.00 0.00 0.00 4.85
1303 4946 1.747709 AGTCTATCACCGCGTACTGT 58.252 50.000 4.92 0.00 0.00 3.55
1492 5135 1.410507 CCATTCATGAGGTGGATGCCA 60.411 52.381 19.32 0.00 41.73 4.92
1557 5200 2.754658 AGAGGAGTACCGTGCGGG 60.755 66.667 15.44 0.00 41.83 6.13
1614 5263 8.779354 AAAGATAAAAACAGCTACTACTCCAG 57.221 34.615 0.00 0.00 0.00 3.86
1634 5284 7.232534 TGTGGTAAGCAATTCAAACCTAAAGAT 59.767 33.333 0.00 0.00 0.00 2.40
1639 5289 5.772672 ACATGTGGTAAGCAATTCAAACCTA 59.227 36.000 0.00 0.00 0.00 3.08
1647 5300 4.037446 ACGTGAAACATGTGGTAAGCAATT 59.963 37.500 0.00 0.00 35.74 2.32
1648 5301 3.568007 ACGTGAAACATGTGGTAAGCAAT 59.432 39.130 0.00 0.00 35.74 3.56
1665 5318 2.094182 GCTATTCCAGAAGACCACGTGA 60.094 50.000 19.30 0.00 0.00 4.35
1736 5397 5.811399 TGGGCGTTAAAGATTGTATCAAG 57.189 39.130 0.00 0.00 0.00 3.02
2042 6371 6.358558 CGATGCTCGATCTTACTTTCTAAGAC 59.641 42.308 0.00 0.00 43.74 3.01
2072 6618 9.593134 ACTACTACTGTCATGATGAGAAATTTC 57.407 33.333 10.33 10.33 0.00 2.17
2174 6879 6.043243 CCATTCTCTACATAGGCTTTTCCCTA 59.957 42.308 0.00 0.00 41.48 3.53
2213 6918 0.246635 GTGAGGCCTATGTCACGTGT 59.753 55.000 16.51 0.00 34.16 4.49
2215 6920 1.614241 GGGTGAGGCCTATGTCACGT 61.614 60.000 4.42 0.00 43.45 4.49
2282 6987 1.605058 GCTCGTCCAGCTCCAAGGTA 61.605 60.000 0.00 0.00 45.83 3.08
2575 7388 4.947388 ACGCAATGTGTAGTATTTCCCATT 59.053 37.500 0.00 0.00 0.00 3.16
2811 7706 3.612479 GCTCAGGAAATTTGACACGCAAT 60.612 43.478 0.00 0.00 36.15 3.56
3070 7978 2.152830 TGGCTTGCCAAATTCATTTGC 58.847 42.857 12.40 3.97 44.32 3.68
3077 7985 2.794103 GGGATTTTGGCTTGCCAAATT 58.206 42.857 31.98 28.39 39.08 1.82
3223 8133 2.941720 GGGCATGTGAAGAAGAGATGTC 59.058 50.000 0.00 0.00 0.00 3.06
3290 8200 3.895232 ATGTTATTCGGACAGCAGTCT 57.105 42.857 9.29 0.00 44.36 3.24
3531 8442 1.483827 CCTCAGCATCTTAGCTCCACA 59.516 52.381 0.00 0.00 44.54 4.17
3587 8498 2.127065 TTGCATCCTCCCCCTGGA 59.873 61.111 0.00 0.00 38.75 3.86
3737 8652 6.642131 GCAACAAGCTGATCAAAGTTTTATGA 59.358 34.615 0.00 0.00 41.15 2.15
3756 8673 3.428746 ACACGCACATAAAAGCAACAA 57.571 38.095 0.00 0.00 0.00 2.83
3762 8679 4.742438 AACCACTACACGCACATAAAAG 57.258 40.909 0.00 0.00 0.00 2.27
3917 8837 5.449999 CCCCTTTCCATTACTTTCATAACGC 60.450 44.000 0.00 0.00 0.00 4.84
4024 8965 8.798975 ATCTATGTATTATATGATCCGGGGTT 57.201 34.615 0.00 0.00 0.00 4.11
4150 9432 4.997395 GCCACGAAGTTATGATATGGATGT 59.003 41.667 0.00 0.00 41.61 3.06
4233 9526 6.205464 AGAGAAAGATCAAACATTTTCGAGCA 59.795 34.615 0.00 0.00 35.32 4.26
4332 9625 5.167845 TGGAAACAAAGAAGTTGCTTCAAC 58.832 37.500 10.91 1.71 41.96 3.18
4371 9677 3.733443 AATGTGTCCAAAGGTTTCAGC 57.267 42.857 0.00 0.00 0.00 4.26
4384 9690 5.376854 AGTACCATCTGCAAAAATGTGTC 57.623 39.130 0.00 0.00 0.00 3.67
4428 9743 2.158842 GCCTCTGCCTTCATACATGAGT 60.159 50.000 0.00 0.00 38.19 3.41
4531 9847 5.357257 CATTGGTACGTAGAGTATTTGGCT 58.643 41.667 0.00 0.00 37.69 4.75
4923 10288 9.632807 TTGGTGATGTTAAATTGTATTGCTTAC 57.367 29.630 0.00 0.00 0.00 2.34
5194 10560 0.863538 CGATCCTCACGCTTCGTCTG 60.864 60.000 0.00 0.00 38.32 3.51
5261 10627 3.085533 TCCAAAAATTGCTAGCGCCTTA 58.914 40.909 10.77 0.00 34.43 2.69
5438 10833 1.965414 TGCCTCAAGTCCCCTTCATA 58.035 50.000 0.00 0.00 0.00 2.15
5439 10834 1.213926 GATGCCTCAAGTCCCCTTCAT 59.786 52.381 0.00 0.00 0.00 2.57
5440 10835 0.620556 GATGCCTCAAGTCCCCTTCA 59.379 55.000 0.00 0.00 0.00 3.02
5441 10836 0.915364 AGATGCCTCAAGTCCCCTTC 59.085 55.000 0.00 0.00 0.00 3.46
5442 10837 1.005215 CAAGATGCCTCAAGTCCCCTT 59.995 52.381 0.00 0.00 0.00 3.95
5461 10856 7.500720 AATTAGATTGAATGTGCGATCATCA 57.499 32.000 0.00 0.00 32.19 3.07
5562 10960 1.348696 TCTGTTGCAGCAGGAATCTCA 59.651 47.619 27.53 6.26 37.12 3.27
5581 10979 4.563184 CAGGTTAGCTCGTTGTTCAGTATC 59.437 45.833 0.00 0.00 0.00 2.24
5744 11142 0.760567 ATCCACTGGCGCTCCTATCA 60.761 55.000 7.64 0.00 0.00 2.15
5772 11170 6.829229 TCTGCAAATGTGATCTTTTGAGAT 57.171 33.333 15.80 0.00 39.49 2.75
5773 11171 6.638096 TTCTGCAAATGTGATCTTTTGAGA 57.362 33.333 15.80 12.81 39.49 3.27
5813 11211 2.881441 GCAGAATGATGCATTGCCG 58.119 52.632 8.79 0.00 45.77 5.69
5822 11220 4.392047 TCGCTTTGGATATGCAGAATGAT 58.608 39.130 0.00 0.00 39.69 2.45
5828 11226 4.095483 AGAAGTTTCGCTTTGGATATGCAG 59.905 41.667 0.00 0.00 37.59 4.41
5843 11241 4.213482 ACTTACGATGTTGGCAGAAGTTTC 59.787 41.667 0.00 0.00 0.00 2.78
5852 11250 0.958382 TGGGCACTTACGATGTTGGC 60.958 55.000 0.00 0.00 0.00 4.52
5870 11268 6.373779 ACTTTCATGAATTACTTTGTCGCTG 58.626 36.000 9.40 0.00 0.00 5.18
5871 11269 6.560253 ACTTTCATGAATTACTTTGTCGCT 57.440 33.333 9.40 0.00 0.00 4.93
5894 11292 8.671384 ACAAGTCAAAACATTAGTACTGCTTA 57.329 30.769 5.39 0.00 0.00 3.09
5908 11306 6.205853 TGTGGGTCATACATACAAGTCAAAAC 59.794 38.462 0.00 0.00 0.00 2.43
5971 11370 2.279173 ACTTTGCTAGGTCTTCCCCAT 58.721 47.619 0.00 0.00 0.00 4.00
5983 11382 3.640967 ACCTGCCAAATGAAACTTTGCTA 59.359 39.130 0.00 0.00 35.28 3.49
5997 11396 3.010027 TCCTCATTGTCAATACCTGCCAA 59.990 43.478 0.00 0.00 0.00 4.52
6013 11412 4.476297 TGCATCCAAGCAATTATCCTCAT 58.524 39.130 0.00 0.00 42.46 2.90
6014 11413 3.900971 TGCATCCAAGCAATTATCCTCA 58.099 40.909 0.00 0.00 42.46 3.86
6564 12463 6.324042 TGTACATACACAGGTATACAACGTG 58.676 40.000 13.83 13.83 46.98 4.49
6565 12464 6.513806 TGTACATACACAGGTATACAACGT 57.486 37.500 5.01 0.00 38.14 3.99
6566 12465 6.976349 ACATGTACATACACAGGTATACAACG 59.024 38.462 8.32 0.00 41.31 4.10
6574 12473 9.899661 AATACAAATACATGTACATACACAGGT 57.100 29.630 7.96 3.80 44.81 4.00
6595 12494 9.392506 TCCATGATCCTATTCTTTAGGAATACA 57.607 33.333 5.52 7.08 45.83 2.29
6598 12497 9.120658 TGATCCATGATCCTATTCTTTAGGAAT 57.879 33.333 5.52 0.00 45.83 3.01
6599 12498 8.378565 GTGATCCATGATCCTATTCTTTAGGAA 58.621 37.037 5.52 0.00 45.83 3.36
6600 12499 7.310052 CGTGATCCATGATCCTATTCTTTAGGA 60.310 40.741 3.95 3.95 46.65 2.94
6601 12500 6.815641 CGTGATCCATGATCCTATTCTTTAGG 59.184 42.308 0.00 0.00 38.20 2.69
6602 12501 6.312426 GCGTGATCCATGATCCTATTCTTTAG 59.688 42.308 0.00 0.00 38.20 1.85
6603 12502 6.166279 GCGTGATCCATGATCCTATTCTTTA 58.834 40.000 0.00 0.00 38.20 1.85
6604 12503 4.999950 GCGTGATCCATGATCCTATTCTTT 59.000 41.667 0.00 0.00 38.20 2.52
6605 12504 4.564406 GGCGTGATCCATGATCCTATTCTT 60.564 45.833 0.00 0.00 38.20 2.52
6606 12505 3.055530 GGCGTGATCCATGATCCTATTCT 60.056 47.826 0.00 0.00 38.20 2.40
6607 12506 3.265791 GGCGTGATCCATGATCCTATTC 58.734 50.000 0.00 0.00 38.20 1.75
6608 12507 2.026822 GGGCGTGATCCATGATCCTATT 60.027 50.000 0.00 0.00 38.20 1.73
6609 12508 1.556911 GGGCGTGATCCATGATCCTAT 59.443 52.381 0.00 0.00 38.20 2.57
6610 12509 0.976641 GGGCGTGATCCATGATCCTA 59.023 55.000 0.00 0.00 38.20 2.94
6611 12510 1.757306 GGGCGTGATCCATGATCCT 59.243 57.895 0.00 0.00 38.20 3.24
6612 12511 1.669115 CGGGCGTGATCCATGATCC 60.669 63.158 0.00 0.00 38.20 3.36
6613 12512 1.669115 CCGGGCGTGATCCATGATC 60.669 63.158 0.00 0.00 39.31 2.92
6614 12513 2.427320 CCGGGCGTGATCCATGAT 59.573 61.111 0.00 0.00 0.00 2.45
6615 12514 3.860605 CCCGGGCGTGATCCATGA 61.861 66.667 8.08 0.00 0.00 3.07
6633 12532 2.360350 ATGGAAGTGGCACGCAGG 60.360 61.111 12.71 0.00 44.14 4.85
6634 12533 1.642037 CTGATGGAAGTGGCACGCAG 61.642 60.000 12.71 10.00 44.14 5.18
6635 12534 1.672030 CTGATGGAAGTGGCACGCA 60.672 57.895 12.71 4.35 44.14 5.24
6636 12535 2.401766 CCTGATGGAAGTGGCACGC 61.402 63.158 12.71 8.48 35.19 5.34
6637 12536 2.401766 GCCTGATGGAAGTGGCACG 61.402 63.158 12.71 0.00 44.34 5.34
6638 12537 3.595819 GCCTGATGGAAGTGGCAC 58.404 61.111 10.29 10.29 44.34 5.01
6640 12539 0.610232 AACAGCCTGATGGAAGTGGC 60.610 55.000 0.00 0.00 45.21 5.01
6641 12540 1.542915 CAAACAGCCTGATGGAAGTGG 59.457 52.381 0.00 0.00 34.57 4.00
6642 12541 2.233271 ACAAACAGCCTGATGGAAGTG 58.767 47.619 0.00 0.00 34.57 3.16
6643 12542 2.624838 CAACAAACAGCCTGATGGAAGT 59.375 45.455 0.00 0.00 34.57 3.01
6644 12543 2.624838 ACAACAAACAGCCTGATGGAAG 59.375 45.455 0.00 0.00 34.57 3.46
6645 12544 2.665165 ACAACAAACAGCCTGATGGAA 58.335 42.857 0.00 0.00 34.57 3.53
6646 12545 2.363306 ACAACAAACAGCCTGATGGA 57.637 45.000 0.00 0.00 34.57 3.41
6647 12546 3.569701 AGTTACAACAAACAGCCTGATGG 59.430 43.478 0.00 0.00 0.00 3.51
6648 12547 4.836125 AGTTACAACAAACAGCCTGATG 57.164 40.909 0.00 0.00 0.00 3.07
6649 12548 4.278419 GGAAGTTACAACAAACAGCCTGAT 59.722 41.667 0.00 0.00 0.00 2.90
6650 12549 3.630312 GGAAGTTACAACAAACAGCCTGA 59.370 43.478 0.00 0.00 0.00 3.86
6651 12550 3.243401 GGGAAGTTACAACAAACAGCCTG 60.243 47.826 0.00 0.00 0.00 4.85
6652 12551 2.956333 GGGAAGTTACAACAAACAGCCT 59.044 45.455 0.00 0.00 0.00 4.58
6653 12552 2.287368 CGGGAAGTTACAACAAACAGCC 60.287 50.000 0.00 0.00 0.00 4.85
6654 12553 2.356695 ACGGGAAGTTACAACAAACAGC 59.643 45.455 0.00 0.00 0.00 4.40
6655 12554 3.375922 ACACGGGAAGTTACAACAAACAG 59.624 43.478 0.00 0.00 0.00 3.16
6656 12555 3.345414 ACACGGGAAGTTACAACAAACA 58.655 40.909 0.00 0.00 0.00 2.83
6657 12556 5.678132 ATACACGGGAAGTTACAACAAAC 57.322 39.130 0.00 0.00 0.00 2.93
6658 12557 7.388437 AGATATACACGGGAAGTTACAACAAA 58.612 34.615 0.00 0.00 0.00 2.83
6659 12558 6.938507 AGATATACACGGGAAGTTACAACAA 58.061 36.000 0.00 0.00 0.00 2.83
6660 12559 6.534475 AGATATACACGGGAAGTTACAACA 57.466 37.500 0.00 0.00 0.00 3.33
6661 12560 8.975439 CATAAGATATACACGGGAAGTTACAAC 58.025 37.037 0.00 0.00 0.00 3.32
6662 12561 8.916062 TCATAAGATATACACGGGAAGTTACAA 58.084 33.333 0.00 0.00 0.00 2.41
6663 12562 8.355169 GTCATAAGATATACACGGGAAGTTACA 58.645 37.037 0.00 0.00 0.00 2.41
6664 12563 7.811713 GGTCATAAGATATACACGGGAAGTTAC 59.188 40.741 0.00 0.00 0.00 2.50
6665 12564 7.308770 CGGTCATAAGATATACACGGGAAGTTA 60.309 40.741 0.00 0.00 0.00 2.24
6666 12565 6.516194 CGGTCATAAGATATACACGGGAAGTT 60.516 42.308 0.00 0.00 0.00 2.66
6667 12566 5.048224 CGGTCATAAGATATACACGGGAAGT 60.048 44.000 0.00 0.00 0.00 3.01
6668 12567 5.048224 ACGGTCATAAGATATACACGGGAAG 60.048 44.000 0.00 0.00 0.00 3.46
6669 12568 4.828939 ACGGTCATAAGATATACACGGGAA 59.171 41.667 0.00 0.00 0.00 3.97
6670 12569 4.216902 CACGGTCATAAGATATACACGGGA 59.783 45.833 0.00 0.00 0.00 5.14
6671 12570 4.022589 ACACGGTCATAAGATATACACGGG 60.023 45.833 0.00 0.00 0.00 5.28
6672 12571 4.915667 CACACGGTCATAAGATATACACGG 59.084 45.833 0.00 0.00 0.00 4.94
6673 12572 4.915667 CCACACGGTCATAAGATATACACG 59.084 45.833 0.00 0.00 0.00 4.49
6674 12573 5.221382 ACCCACACGGTCATAAGATATACAC 60.221 44.000 0.00 0.00 43.58 2.90
6675 12574 4.897076 ACCCACACGGTCATAAGATATACA 59.103 41.667 0.00 0.00 43.58 2.29
6676 12575 5.010314 TCACCCACACGGTCATAAGATATAC 59.990 44.000 0.00 0.00 43.58 1.47
6677 12576 5.141910 TCACCCACACGGTCATAAGATATA 58.858 41.667 0.00 0.00 43.58 0.86
6678 12577 3.964688 TCACCCACACGGTCATAAGATAT 59.035 43.478 0.00 0.00 43.58 1.63
6679 12578 3.367321 TCACCCACACGGTCATAAGATA 58.633 45.455 0.00 0.00 43.58 1.98
6680 12579 2.184533 TCACCCACACGGTCATAAGAT 58.815 47.619 0.00 0.00 43.58 2.40
6681 12580 1.634960 TCACCCACACGGTCATAAGA 58.365 50.000 0.00 0.00 43.58 2.10
6682 12581 2.465860 TTCACCCACACGGTCATAAG 57.534 50.000 0.00 0.00 43.58 1.73
6683 12582 2.303311 TCATTCACCCACACGGTCATAA 59.697 45.455 0.00 0.00 43.58 1.90
6684 12583 1.903183 TCATTCACCCACACGGTCATA 59.097 47.619 0.00 0.00 43.58 2.15
6685 12584 0.690192 TCATTCACCCACACGGTCAT 59.310 50.000 0.00 0.00 43.58 3.06
6686 12585 0.470341 TTCATTCACCCACACGGTCA 59.530 50.000 0.00 0.00 43.58 4.02
6687 12586 1.265905 GTTTCATTCACCCACACGGTC 59.734 52.381 0.00 0.00 43.58 4.79
6688 12587 6.805215 ATGAGTTTCATTCACCCACACGGT 62.805 45.833 0.00 0.00 38.78 4.83
6689 12588 1.535462 GAGTTTCATTCACCCACACGG 59.465 52.381 0.00 0.00 37.81 4.94
6690 12589 2.217750 TGAGTTTCATTCACCCACACG 58.782 47.619 0.00 0.00 0.00 4.49
6691 12590 4.759693 TGTATGAGTTTCATTCACCCACAC 59.240 41.667 0.00 0.00 38.26 3.82
6692 12591 4.979335 TGTATGAGTTTCATTCACCCACA 58.021 39.130 0.00 0.00 38.26 4.17
6693 12592 5.003804 ACTGTATGAGTTTCATTCACCCAC 58.996 41.667 0.00 0.00 38.26 4.61
6694 12593 5.003160 CACTGTATGAGTTTCATTCACCCA 58.997 41.667 0.00 0.00 38.26 4.51
6695 12594 4.142600 GCACTGTATGAGTTTCATTCACCC 60.143 45.833 0.00 0.00 38.26 4.61
6696 12595 4.455533 TGCACTGTATGAGTTTCATTCACC 59.544 41.667 0.00 0.00 38.26 4.02
6697 12596 5.180117 ACTGCACTGTATGAGTTTCATTCAC 59.820 40.000 0.00 0.00 38.26 3.18
6698 12597 5.308014 ACTGCACTGTATGAGTTTCATTCA 58.692 37.500 0.00 0.00 38.26 2.57
6699 12598 5.869753 ACTGCACTGTATGAGTTTCATTC 57.130 39.130 0.00 0.00 38.26 2.67
6700 12599 6.000219 AGAACTGCACTGTATGAGTTTCATT 59.000 36.000 0.00 0.00 38.26 2.57
6701 12600 5.555017 AGAACTGCACTGTATGAGTTTCAT 58.445 37.500 0.00 0.00 40.72 2.57
6702 12601 4.960938 AGAACTGCACTGTATGAGTTTCA 58.039 39.130 0.00 0.00 32.32 2.69
6703 12602 6.020281 CGATAGAACTGCACTGTATGAGTTTC 60.020 42.308 0.00 0.00 32.32 2.78
6704 12603 5.807520 CGATAGAACTGCACTGTATGAGTTT 59.192 40.000 0.00 0.00 32.32 2.66
6705 12604 5.105716 ACGATAGAACTGCACTGTATGAGTT 60.106 40.000 0.00 0.00 41.38 3.01
6706 12605 4.399618 ACGATAGAACTGCACTGTATGAGT 59.600 41.667 0.00 0.00 41.38 3.41
6707 12606 4.926244 ACGATAGAACTGCACTGTATGAG 58.074 43.478 0.00 0.00 41.38 2.90
6708 12607 4.202020 GGACGATAGAACTGCACTGTATGA 60.202 45.833 0.00 0.00 41.38 2.15
6709 12608 4.045104 GGACGATAGAACTGCACTGTATG 58.955 47.826 0.00 0.00 41.38 2.39
6710 12609 3.699538 TGGACGATAGAACTGCACTGTAT 59.300 43.478 0.00 0.00 41.38 2.29
6711 12610 3.086282 TGGACGATAGAACTGCACTGTA 58.914 45.455 0.00 0.00 41.38 2.74
6712 12611 1.893137 TGGACGATAGAACTGCACTGT 59.107 47.619 0.00 0.00 41.38 3.55
6713 12612 2.534298 CTGGACGATAGAACTGCACTG 58.466 52.381 0.00 0.00 41.38 3.66
6714 12613 1.134965 GCTGGACGATAGAACTGCACT 60.135 52.381 0.00 0.00 38.89 4.40
6715 12614 1.134965 AGCTGGACGATAGAACTGCAC 60.135 52.381 0.00 0.00 40.38 4.57
6716 12615 1.186200 AGCTGGACGATAGAACTGCA 58.814 50.000 0.00 0.00 40.38 4.41
6717 12616 1.929836 CAAGCTGGACGATAGAACTGC 59.070 52.381 0.00 0.00 39.15 4.40
6718 12617 2.093973 ACCAAGCTGGACGATAGAACTG 60.094 50.000 8.91 0.00 40.96 3.16
6719 12618 2.180276 ACCAAGCTGGACGATAGAACT 58.820 47.619 8.91 0.00 40.96 3.01
6720 12619 2.674796 ACCAAGCTGGACGATAGAAC 57.325 50.000 8.91 0.00 40.96 3.01
6721 12620 3.958147 TGATACCAAGCTGGACGATAGAA 59.042 43.478 8.91 0.00 40.96 2.10
6722 12621 3.562182 TGATACCAAGCTGGACGATAGA 58.438 45.455 8.91 0.00 40.96 1.98
6723 12622 3.858877 GCTGATACCAAGCTGGACGATAG 60.859 52.174 8.91 0.00 40.96 2.08
6724 12623 2.035961 GCTGATACCAAGCTGGACGATA 59.964 50.000 8.91 0.00 40.96 2.92
6725 12624 1.202580 GCTGATACCAAGCTGGACGAT 60.203 52.381 8.91 0.63 40.96 3.73
6726 12625 0.175760 GCTGATACCAAGCTGGACGA 59.824 55.000 8.91 0.00 40.96 4.20
6727 12626 1.148157 CGCTGATACCAAGCTGGACG 61.148 60.000 8.91 0.00 40.96 4.79
6728 12627 0.175760 TCGCTGATACCAAGCTGGAC 59.824 55.000 8.91 2.09 40.96 4.02
6729 12628 0.175760 GTCGCTGATACCAAGCTGGA 59.824 55.000 8.91 0.00 40.96 3.86
6730 12629 0.811616 GGTCGCTGATACCAAGCTGG 60.812 60.000 0.00 0.00 45.02 4.85
6731 12630 0.108186 TGGTCGCTGATACCAAGCTG 60.108 55.000 0.00 0.00 43.99 4.24
6732 12631 0.176680 CTGGTCGCTGATACCAAGCT 59.823 55.000 0.00 0.00 46.14 3.74
6733 12632 0.811616 CCTGGTCGCTGATACCAAGC 60.812 60.000 0.00 0.00 46.14 4.01
6734 12633 0.537188 ACCTGGTCGCTGATACCAAG 59.463 55.000 0.00 0.00 46.14 3.61
6735 12634 0.535335 GACCTGGTCGCTGATACCAA 59.465 55.000 11.71 0.00 46.14 3.67
6736 12635 1.327690 GGACCTGGTCGCTGATACCA 61.328 60.000 19.98 0.00 44.75 3.25
6737 12636 1.442148 GGACCTGGTCGCTGATACC 59.558 63.158 19.98 0.88 37.53 2.73
6738 12637 1.442148 GGGACCTGGTCGCTGATAC 59.558 63.158 30.19 11.66 41.34 2.24
6739 12638 3.950232 GGGACCTGGTCGCTGATA 58.050 61.111 30.19 0.00 41.34 2.15
6744 12643 2.670148 ATGGAAGGGACCTGGTCGC 61.670 63.158 30.30 30.30 44.21 5.19
6745 12644 1.221840 CATGGAAGGGACCTGGTCG 59.778 63.158 19.98 0.38 32.65 4.79
6746 12645 1.609783 CCATGGAAGGGACCTGGTC 59.390 63.158 18.65 18.65 43.46 4.02
6747 12646 2.616458 GCCATGGAAGGGACCTGGT 61.616 63.158 18.40 0.00 43.46 4.00
6748 12647 2.276309 GAGCCATGGAAGGGACCTGG 62.276 65.000 18.40 0.00 43.46 4.45
6749 12648 1.225704 GAGCCATGGAAGGGACCTG 59.774 63.158 18.40 0.00 43.46 4.00
6750 12649 2.003548 GGAGCCATGGAAGGGACCT 61.004 63.158 18.40 0.00 43.46 3.85
6751 12650 2.597903 GGAGCCATGGAAGGGACC 59.402 66.667 18.40 4.79 43.46 4.46
6752 12651 2.190578 CGGAGCCATGGAAGGGAC 59.809 66.667 18.40 0.00 43.46 4.46
6753 12652 3.089874 CCGGAGCCATGGAAGGGA 61.090 66.667 18.40 0.00 43.46 4.20
6754 12653 3.089874 TCCGGAGCCATGGAAGGG 61.090 66.667 18.40 10.55 43.76 3.95
6755 12654 2.190578 GTCCGGAGCCATGGAAGG 59.809 66.667 18.40 12.23 35.67 3.46
6756 12655 1.144936 GAGTCCGGAGCCATGGAAG 59.855 63.158 18.40 2.36 35.67 3.46
6757 12656 2.367202 GGAGTCCGGAGCCATGGAA 61.367 63.158 18.40 0.00 35.67 3.53
6758 12657 2.764128 GGAGTCCGGAGCCATGGA 60.764 66.667 18.40 0.00 0.00 3.41
6759 12658 3.083349 TGGAGTCCGGAGCCATGG 61.083 66.667 19.44 7.63 0.00 3.66
6760 12659 2.187946 GTGGAGTCCGGAGCCATG 59.812 66.667 24.44 0.00 33.66 3.66
6761 12660 3.083997 GGTGGAGTCCGGAGCCAT 61.084 66.667 24.44 3.82 33.66 4.40
6762 12661 4.316823 AGGTGGAGTCCGGAGCCA 62.317 66.667 19.44 19.44 0.00 4.75
6763 12662 3.462678 GAGGTGGAGTCCGGAGCC 61.463 72.222 3.06 10.81 0.00 4.70
6764 12663 3.462678 GGAGGTGGAGTCCGGAGC 61.463 72.222 3.06 0.00 0.00 4.70
6765 12664 1.755008 GAGGAGGTGGAGTCCGGAG 60.755 68.421 3.06 0.00 39.30 4.63
6766 12665 2.359404 GAGGAGGTGGAGTCCGGA 59.641 66.667 0.00 0.00 39.30 5.14
6767 12666 2.760385 GGAGGAGGTGGAGTCCGG 60.760 72.222 4.30 0.00 39.30 5.14
6768 12667 3.141488 CGGAGGAGGTGGAGTCCG 61.141 72.222 4.30 0.00 45.48 4.79
6769 12668 3.462678 GCGGAGGAGGTGGAGTCC 61.463 72.222 0.73 0.73 0.00 3.85
6770 12669 3.462678 GGCGGAGGAGGTGGAGTC 61.463 72.222 0.00 0.00 0.00 3.36
6771 12670 4.316823 TGGCGGAGGAGGTGGAGT 62.317 66.667 0.00 0.00 0.00 3.85
6772 12671 3.775654 GTGGCGGAGGAGGTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
6773 12672 3.846405 AAGTGGCGGAGGAGGTGGA 62.846 63.158 0.00 0.00 0.00 4.02
6774 12673 3.316573 GAAGTGGCGGAGGAGGTGG 62.317 68.421 0.00 0.00 0.00 4.61
6775 12674 2.232298 GAGAAGTGGCGGAGGAGGTG 62.232 65.000 0.00 0.00 0.00 4.00
6776 12675 1.985116 GAGAAGTGGCGGAGGAGGT 60.985 63.158 0.00 0.00 0.00 3.85
6777 12676 2.726351 GGAGAAGTGGCGGAGGAGG 61.726 68.421 0.00 0.00 0.00 4.30
6778 12677 2.896443 GGAGAAGTGGCGGAGGAG 59.104 66.667 0.00 0.00 0.00 3.69
6779 12678 3.068691 CGGAGAAGTGGCGGAGGA 61.069 66.667 0.00 0.00 0.00 3.71
6780 12679 4.148825 CCGGAGAAGTGGCGGAGG 62.149 72.222 0.00 0.00 0.00 4.30
6781 12680 4.821589 GCCGGAGAAGTGGCGGAG 62.822 72.222 5.05 0.00 42.22 4.63
6786 12685 3.316573 GAGGTGGCCGGAGAAGTGG 62.317 68.421 5.05 0.00 0.00 4.00
6787 12686 2.266055 GAGGTGGCCGGAGAAGTG 59.734 66.667 5.05 0.00 0.00 3.16
6788 12687 3.382832 CGAGGTGGCCGGAGAAGT 61.383 66.667 5.05 0.00 0.00 3.01
6789 12688 4.821589 GCGAGGTGGCCGGAGAAG 62.822 72.222 5.05 0.00 0.00 2.85
6802 12701 4.840005 GAAAGGGAGCCCGGCGAG 62.840 72.222 9.30 0.00 41.95 5.03
6805 12704 4.491409 GAGGAAAGGGAGCCCGGC 62.491 72.222 0.00 0.00 41.95 6.13
6806 12705 4.162690 CGAGGAAAGGGAGCCCGG 62.163 72.222 0.00 0.00 41.95 5.73
6807 12706 3.075005 TCGAGGAAAGGGAGCCCG 61.075 66.667 0.00 0.00 41.95 6.13
6808 12707 2.585153 GTCGAGGAAAGGGAGCCC 59.415 66.667 0.00 0.00 0.00 5.19
6809 12708 2.291043 TGGTCGAGGAAAGGGAGCC 61.291 63.158 0.00 0.00 0.00 4.70
6810 12709 1.079057 GTGGTCGAGGAAAGGGAGC 60.079 63.158 0.00 0.00 0.00 4.70
6811 12710 1.192146 TGGTGGTCGAGGAAAGGGAG 61.192 60.000 0.00 0.00 0.00 4.30
6812 12711 1.152204 TGGTGGTCGAGGAAAGGGA 60.152 57.895 0.00 0.00 0.00 4.20
6813 12712 1.296715 CTGGTGGTCGAGGAAAGGG 59.703 63.158 0.00 0.00 0.00 3.95
6814 12713 1.376037 GCTGGTGGTCGAGGAAAGG 60.376 63.158 0.00 0.00 0.00 3.11
6815 12714 1.376037 GGCTGGTGGTCGAGGAAAG 60.376 63.158 0.00 0.00 0.00 2.62
6816 12715 1.841556 AGGCTGGTGGTCGAGGAAA 60.842 57.895 0.00 0.00 0.00 3.13
6817 12716 2.203788 AGGCTGGTGGTCGAGGAA 60.204 61.111 0.00 0.00 0.00 3.36
6818 12717 2.997315 CAGGCTGGTGGTCGAGGA 60.997 66.667 6.61 0.00 0.00 3.71
6819 12718 4.087892 CCAGGCTGGTGGTCGAGG 62.088 72.222 25.74 0.00 31.35 4.63
6820 12719 4.767255 GCCAGGCTGGTGGTCGAG 62.767 72.222 32.80 7.08 40.46 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.