Multiple sequence alignment - TraesCS6A01G041500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G041500 chr6A 100.000 2618 0 0 1 2618 21708106 21705489 0.000000e+00 4835
1 TraesCS6A01G041500 chr6A 95.332 407 19 0 2212 2618 124890610 124891016 0.000000e+00 647
2 TraesCS6A01G041500 chr6D 88.934 1952 129 33 300 2211 22269472 22267568 0.000000e+00 2327
3 TraesCS6A01G041500 chr6D 91.503 306 26 0 1 306 22270300 22269995 3.120000e-114 422
4 TraesCS6A01G041500 chr6D 85.995 407 30 10 2212 2618 201583701 201583322 6.740000e-111 411
5 TraesCS6A01G041500 chr3A 96.069 407 16 0 2212 2618 684763416 684763822 0.000000e+00 664
6 TraesCS6A01G041500 chr7B 92.383 407 28 1 2212 2618 630560074 630559671 6.280000e-161 577
7 TraesCS6A01G041500 chr5B 92.138 407 29 1 2212 2618 527030529 527030126 2.920000e-159 571
8 TraesCS6A01G041500 chr5B 80.556 108 11 4 1247 1344 612983916 612983809 1.000000e-09 75
9 TraesCS6A01G041500 chr4B 93.906 361 22 0 2258 2618 4204252 4204612 1.770000e-151 545
10 TraesCS6A01G041500 chr3D 90.909 407 28 1 2212 2618 568370704 568371101 2.960000e-149 538
11 TraesCS6A01G041500 chr3D 86.423 383 50 2 1 382 523397924 523398305 4.030000e-113 418
12 TraesCS6A01G041500 chr7A 87.224 407 52 0 2212 2618 401937506 401937912 5.100000e-127 464
13 TraesCS6A01G041500 chr7A 86.777 363 45 3 19 380 646109122 646108762 4.060000e-108 401
14 TraesCS6A01G041500 chr7A 85.340 382 51 4 1 380 140771410 140771788 8.790000e-105 390
15 TraesCS6A01G041500 chr2D 88.482 382 44 0 1 382 78009528 78009147 1.840000e-126 462
16 TraesCS6A01G041500 chr2B 87.368 380 47 1 1 380 211994081 211993703 4.000000e-118 435
17 TraesCS6A01G041500 chr6B 91.640 311 26 0 2308 2618 230624791 230625101 5.180000e-117 431
18 TraesCS6A01G041500 chr6B 97.115 104 3 0 2212 2315 230612723 230612826 2.680000e-40 176
19 TraesCS6A01G041500 chr7D 85.864 382 48 5 1 379 490340282 490339904 4.060000e-108 401
20 TraesCS6A01G041500 chr4A 85.039 381 55 2 1 380 588591670 588592049 1.140000e-103 387
21 TraesCS6A01G041500 chr3B 84.375 384 56 3 1 382 611137763 611137382 8.850000e-100 374
22 TraesCS6A01G041500 chr5A 78.248 331 70 2 1010 1339 619754637 619754308 7.340000e-51 211
23 TraesCS6A01G041500 chr5A 87.000 100 11 1 1247 1344 619722034 619721935 7.660000e-21 111
24 TraesCS6A01G041500 chr5D 78.182 330 70 2 1010 1338 495785113 495784785 2.640000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G041500 chr6A 21705489 21708106 2617 True 4835.0 4835 100.0000 1 2618 1 chr6A.!!$R1 2617
1 TraesCS6A01G041500 chr6D 22267568 22270300 2732 True 1374.5 2327 90.2185 1 2211 2 chr6D.!!$R2 2210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 1021 0.032815 TTGTCGCTTCGGACATCACA 59.967 50.0 0.0 0.0 45.62 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2870 0.028505 GCGTGCACATGATTAGCAGG 59.971 55.0 18.64 10.58 44.38 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.090588 GTGGGTCGCCGGGATTCA 62.091 66.667 2.18 0.00 0.00 2.57
53 54 2.104331 CCGGGATTCACCTCGTCG 59.896 66.667 0.00 0.00 38.98 5.12
147 148 0.405973 GAAAGGGAGGGAAAGTGGCT 59.594 55.000 0.00 0.00 0.00 4.75
155 156 2.647297 GAAAGTGGCTGCCTGTGC 59.353 61.111 21.03 7.55 38.26 4.57
219 220 4.961511 TCCGCGCGCTGTCTGTTT 62.962 61.111 30.48 0.00 0.00 2.83
232 233 1.370414 CTGTTTGGCCGCAAACTCG 60.370 57.895 17.01 7.05 43.36 4.18
265 266 1.376683 CGGGAATGGGTCGAAAGCA 60.377 57.895 0.00 0.00 0.00 3.91
269 270 1.339151 GGAATGGGTCGAAAGCAGACT 60.339 52.381 0.00 0.00 38.58 3.24
280 281 4.146961 TCGAAAGCAGACTAAAAACGTACG 59.853 41.667 15.01 15.01 0.00 3.67
288 289 2.034053 ACTAAAAACGTACGACGGTCCA 59.966 45.455 24.41 0.00 42.91 4.02
321 851 0.600057 CTTGGAAGGCCTGCTTTGTC 59.400 55.000 11.64 0.11 34.31 3.18
382 912 0.802494 CGCGTTGAAGTTGGCCTTAT 59.198 50.000 3.32 0.00 32.03 1.73
383 913 2.004017 CGCGTTGAAGTTGGCCTTATA 58.996 47.619 3.32 0.00 32.03 0.98
384 914 2.612212 CGCGTTGAAGTTGGCCTTATAT 59.388 45.455 3.32 0.00 32.03 0.86
388 918 5.468746 GCGTTGAAGTTGGCCTTATATCATA 59.531 40.000 3.32 0.00 32.03 2.15
419 949 1.300697 GTCGTGTCCTTCGCTTGGT 60.301 57.895 0.00 0.00 0.00 3.67
435 965 0.620556 TGGTTTCATCTCCTCCCTGC 59.379 55.000 0.00 0.00 0.00 4.85
465 995 0.468226 TCTTGACGTGGTGCTTTCCT 59.532 50.000 0.00 0.00 0.00 3.36
466 996 1.134220 TCTTGACGTGGTGCTTTCCTT 60.134 47.619 0.00 0.00 0.00 3.36
467 997 1.264288 CTTGACGTGGTGCTTTCCTTC 59.736 52.381 0.00 0.00 0.00 3.46
468 998 0.179234 TGACGTGGTGCTTTCCTTCA 59.821 50.000 0.00 0.00 0.00 3.02
469 999 0.586802 GACGTGGTGCTTTCCTTCAC 59.413 55.000 0.00 0.00 0.00 3.18
470 1000 1.569493 CGTGGTGCTTTCCTTCACG 59.431 57.895 0.00 0.00 43.58 4.35
471 1001 1.841663 CGTGGTGCTTTCCTTCACGG 61.842 60.000 0.00 0.00 44.79 4.94
472 1002 0.818040 GTGGTGCTTTCCTTCACGGT 60.818 55.000 0.00 0.00 34.20 4.83
473 1003 0.106918 TGGTGCTTTCCTTCACGGTT 60.107 50.000 0.00 0.00 34.20 4.44
474 1004 0.310854 GGTGCTTTCCTTCACGGTTG 59.689 55.000 0.00 0.00 34.20 3.77
475 1005 1.021968 GTGCTTTCCTTCACGGTTGT 58.978 50.000 0.00 0.00 0.00 3.32
476 1006 1.002792 GTGCTTTCCTTCACGGTTGTC 60.003 52.381 0.00 0.00 0.00 3.18
477 1007 0.234884 GCTTTCCTTCACGGTTGTCG 59.765 55.000 0.00 0.00 45.88 4.35
478 1008 0.234884 CTTTCCTTCACGGTTGTCGC 59.765 55.000 0.00 0.00 43.89 5.19
479 1009 0.179067 TTTCCTTCACGGTTGTCGCT 60.179 50.000 0.00 0.00 43.89 4.93
480 1010 0.179067 TTCCTTCACGGTTGTCGCTT 60.179 50.000 0.00 0.00 43.89 4.68
481 1011 0.599204 TCCTTCACGGTTGTCGCTTC 60.599 55.000 0.00 0.00 43.89 3.86
482 1012 1.487231 CTTCACGGTTGTCGCTTCG 59.513 57.895 0.00 0.00 43.89 3.79
483 1013 1.886861 CTTCACGGTTGTCGCTTCGG 61.887 60.000 0.00 0.00 43.89 4.30
484 1014 2.352704 TTCACGGTTGTCGCTTCGGA 62.353 55.000 0.00 0.00 43.89 4.55
485 1015 2.355481 ACGGTTGTCGCTTCGGAC 60.355 61.111 0.00 0.00 43.89 4.79
486 1016 2.355363 CGGTTGTCGCTTCGGACA 60.355 61.111 0.00 0.00 44.74 4.02
487 1017 1.736645 CGGTTGTCGCTTCGGACAT 60.737 57.895 0.00 0.00 45.62 3.06
488 1018 1.683790 CGGTTGTCGCTTCGGACATC 61.684 60.000 0.00 0.00 45.62 3.06
489 1019 0.669318 GGTTGTCGCTTCGGACATCA 60.669 55.000 0.00 0.00 45.62 3.07
490 1020 0.438830 GTTGTCGCTTCGGACATCAC 59.561 55.000 0.00 0.00 45.62 3.06
491 1021 0.032815 TTGTCGCTTCGGACATCACA 59.967 50.000 0.00 0.00 45.62 3.58
492 1022 0.388520 TGTCGCTTCGGACATCACAG 60.389 55.000 0.00 0.00 41.76 3.66
493 1023 1.446099 TCGCTTCGGACATCACAGC 60.446 57.895 0.00 0.00 0.00 4.40
494 1024 2.456119 CGCTTCGGACATCACAGCC 61.456 63.158 0.00 0.00 0.00 4.85
548 1078 1.004560 TTCGCTCCTTCTGCCACTG 60.005 57.895 0.00 0.00 0.00 3.66
581 1111 4.937620 TCAATTTCTTCGATAAGCAGTGCT 59.062 37.500 13.14 13.14 42.56 4.40
586 1116 5.324784 TCTTCGATAAGCAGTGCTAAAGA 57.675 39.130 20.09 17.69 38.25 2.52
728 1258 4.206200 GCGTATTGTTGACTTTTTGTGGTG 59.794 41.667 0.00 0.00 0.00 4.17
743 1275 0.324614 TGGTGCCTCGTGATGACAAT 59.675 50.000 0.00 0.00 0.00 2.71
744 1276 1.009829 GGTGCCTCGTGATGACAATC 58.990 55.000 0.00 0.00 0.00 2.67
746 1278 2.283298 GTGCCTCGTGATGACAATCAT 58.717 47.619 0.00 0.00 44.54 2.45
747 1279 3.457234 GTGCCTCGTGATGACAATCATA 58.543 45.455 0.00 0.00 44.54 2.15
823 1364 6.949352 ACTCCCTTCACAATAATGCAATAG 57.051 37.500 0.00 0.00 0.00 1.73
827 1368 7.059788 TCCCTTCACAATAATGCAATAGCTTA 58.940 34.615 0.00 0.00 42.74 3.09
874 1416 7.227049 TCAATACCTTGCGATGACATAGATA 57.773 36.000 0.00 0.00 32.11 1.98
882 1424 6.013842 TGCGATGACATAGATAAGTACAGG 57.986 41.667 0.00 0.00 0.00 4.00
914 1459 6.825944 AAGAAGAAATAGCTGGTTTCCTTC 57.174 37.500 17.65 17.90 36.48 3.46
932 1477 1.864669 TCCATTTTCCTTGGGCCATC 58.135 50.000 7.26 0.00 34.85 3.51
947 1492 0.036164 CCATCCCCGTTGTGAACTGA 59.964 55.000 0.00 0.00 0.00 3.41
948 1493 1.442769 CATCCCCGTTGTGAACTGAG 58.557 55.000 0.00 0.00 0.00 3.35
953 1498 1.299541 CCGTTGTGAACTGAGCTTGT 58.700 50.000 0.00 0.00 0.00 3.16
959 1504 6.071463 CGTTGTGAACTGAGCTTGTATAAAC 58.929 40.000 0.00 0.00 0.00 2.01
969 1514 7.171678 ACTGAGCTTGTATAAACAGAGAACAAC 59.828 37.037 0.00 0.00 36.83 3.32
970 1515 6.145534 TGAGCTTGTATAAACAGAGAACAACG 59.854 38.462 0.00 0.00 36.83 4.10
972 1517 6.145696 AGCTTGTATAAACAGAGAACAACGAC 59.854 38.462 0.00 0.00 36.83 4.34
973 1518 6.617953 GCTTGTATAAACAGAGAACAACGACC 60.618 42.308 0.00 0.00 36.83 4.79
1000 1545 0.767375 AGGCCAAGCAACTCAAGAGA 59.233 50.000 5.01 0.00 0.00 3.10
1065 1610 2.614983 GGTGATCTACTCTCTCACCGTC 59.385 54.545 5.29 0.00 46.74 4.79
1225 1770 0.036010 GCTTAACTGGCTGGAGCTCA 60.036 55.000 17.19 0.61 41.70 4.26
1248 1793 2.176546 CAATGGCCGCTCAACGTG 59.823 61.111 0.00 0.00 41.42 4.49
1317 1862 4.899239 CTGATGGCCGGCGTCTCC 62.899 72.222 22.54 6.51 0.00 3.71
1347 1892 3.455910 CCTCCATGGTAACTCATCTTCCA 59.544 47.826 12.58 0.00 37.61 3.53
1350 1895 4.103153 TCCATGGTAACTCATCTTCCATCC 59.897 45.833 12.58 0.00 36.86 3.51
1352 1897 2.434336 TGGTAACTCATCTTCCATCCCG 59.566 50.000 0.00 0.00 37.61 5.14
1353 1898 2.484889 GTAACTCATCTTCCATCCCGC 58.515 52.381 0.00 0.00 0.00 6.13
1355 1900 1.330655 ACTCATCTTCCATCCCGCGT 61.331 55.000 4.92 0.00 0.00 6.01
1358 1903 0.179073 CATCTTCCATCCCGCGTTCT 60.179 55.000 4.92 0.00 0.00 3.01
1378 1943 1.144093 TCCTTGGCTTTTCTCCGGAAA 59.856 47.619 5.23 0.00 39.38 3.13
1386 1951 4.062991 GCTTTTCTCCGGAAAACACTAGA 58.937 43.478 5.23 0.00 43.76 2.43
1388 1953 5.560375 GCTTTTCTCCGGAAAACACTAGAAC 60.560 44.000 5.23 0.00 43.76 3.01
1391 1956 5.223449 TCTCCGGAAAACACTAGAACAAT 57.777 39.130 5.23 0.00 0.00 2.71
1392 1957 5.235516 TCTCCGGAAAACACTAGAACAATC 58.764 41.667 5.23 0.00 0.00 2.67
1399 1967 6.922957 GGAAAACACTAGAACAATCAAATGCA 59.077 34.615 0.00 0.00 0.00 3.96
1402 1970 6.246420 ACACTAGAACAATCAAATGCACTC 57.754 37.500 0.00 0.00 0.00 3.51
1404 1972 4.997395 ACTAGAACAATCAAATGCACTCGT 59.003 37.500 0.00 0.00 0.00 4.18
1407 1975 3.988379 ACAATCAAATGCACTCGTGTT 57.012 38.095 0.00 0.00 0.00 3.32
1409 1977 3.236816 CAATCAAATGCACTCGTGTTCC 58.763 45.455 0.00 0.00 0.00 3.62
1422 1990 5.512082 CACTCGTGTTCCTCTAATTTCTACG 59.488 44.000 0.00 0.00 0.00 3.51
1434 2002 4.483476 AATTTCTACGCTTTGTGGTCAC 57.517 40.909 0.00 0.00 0.00 3.67
1438 2006 3.128349 TCTACGCTTTGTGGTCACTTTC 58.872 45.455 2.66 0.00 0.00 2.62
1439 2007 1.745232 ACGCTTTGTGGTCACTTTCA 58.255 45.000 2.66 0.00 0.00 2.69
1440 2008 1.400494 ACGCTTTGTGGTCACTTTCAC 59.600 47.619 2.66 0.00 34.71 3.18
1441 2009 1.670811 CGCTTTGTGGTCACTTTCACT 59.329 47.619 2.66 0.00 35.15 3.41
1442 2010 2.097466 CGCTTTGTGGTCACTTTCACTT 59.903 45.455 2.66 0.00 35.15 3.16
1443 2011 3.427503 CGCTTTGTGGTCACTTTCACTTT 60.428 43.478 2.66 0.00 35.15 2.66
1444 2012 4.105486 GCTTTGTGGTCACTTTCACTTTC 58.895 43.478 2.66 0.00 35.15 2.62
1452 2020 1.000938 CACTTTCACTTTCAGGCTGCC 60.001 52.381 11.65 11.65 0.00 4.85
1485 2053 0.043183 TTCTGGGATCAGGGAGAGCA 59.957 55.000 0.00 0.00 41.23 4.26
1518 2086 4.298626 TGCTTCTGGTCTATGTCCCTTAT 58.701 43.478 0.00 0.00 0.00 1.73
1534 2102 0.440758 TTATGTTGCTTTCGCCGTCG 59.559 50.000 0.00 0.00 34.43 5.12
1555 2123 4.910956 CGATTCTTCGTGGGCTCA 57.089 55.556 0.00 0.00 40.53 4.26
1567 2135 2.583520 GGCTCACCTCAGGCTCAG 59.416 66.667 0.00 0.00 36.04 3.35
1569 2137 3.028921 GCTCACCTCAGGCTCAGGG 62.029 68.421 9.99 2.23 35.01 4.45
1570 2138 1.305633 CTCACCTCAGGCTCAGGGA 60.306 63.158 9.99 2.27 35.01 4.20
1574 2142 1.305633 CCTCAGGCTCAGGGACTCA 60.306 63.158 0.00 0.00 34.60 3.41
1596 2164 1.666189 GCGGGTTCTCTTGCATCTTAC 59.334 52.381 0.00 0.00 0.00 2.34
1662 2230 1.777878 ACCCACAACCATGTAACCAGA 59.222 47.619 0.00 0.00 37.82 3.86
1665 2233 3.308402 CCCACAACCATGTAACCAGAGAT 60.308 47.826 0.00 0.00 37.82 2.75
1676 2244 3.305398 AACCAGAGATGAGTTCGTGAC 57.695 47.619 0.00 0.00 0.00 3.67
1680 2248 3.368843 CCAGAGATGAGTTCGTGACCATT 60.369 47.826 0.00 0.00 0.00 3.16
1681 2249 3.615937 CAGAGATGAGTTCGTGACCATTG 59.384 47.826 0.00 0.00 0.00 2.82
1689 2257 3.569701 AGTTCGTGACCATTGCAATCTTT 59.430 39.130 9.53 0.00 0.00 2.52
1718 2286 9.440773 TGTACAATGGATTAGAGCATTATCATC 57.559 33.333 0.00 0.00 0.00 2.92
1741 2309 5.523916 TCTTTCTCTTTACATATCCGCTTGC 59.476 40.000 0.00 0.00 0.00 4.01
1752 2320 5.120519 ACATATCCGCTTGCAAAATTGTTTG 59.879 36.000 0.00 0.00 45.88 2.93
1755 2323 1.263752 CGCTTGCAAAATTGTTTGGGG 59.736 47.619 0.00 0.00 43.73 4.96
1757 2325 2.033174 GCTTGCAAAATTGTTTGGGGTG 59.967 45.455 0.00 0.00 43.73 4.61
1794 2362 2.046217 GGACGGGTTCCTTGAGGC 60.046 66.667 0.00 0.00 41.95 4.70
1815 2383 0.323629 TACAGGCTACACCAGTTGGC 59.676 55.000 0.00 0.00 44.22 4.52
1823 2391 2.280592 ACCAGTTGGCGTCGTTCC 60.281 61.111 0.00 0.00 39.32 3.62
1829 2397 0.947180 GTTGGCGTCGTTCCTTGCTA 60.947 55.000 0.00 0.00 0.00 3.49
1830 2398 0.947180 TTGGCGTCGTTCCTTGCTAC 60.947 55.000 0.00 0.00 0.00 3.58
1842 2410 0.734889 CTTGCTACGCCAAGGGATTG 59.265 55.000 3.83 0.00 38.78 2.67
1863 2431 7.917505 GGATTGACATTATGTGAAATCCTTGTC 59.082 37.037 26.29 10.77 43.50 3.18
1871 2439 2.480419 GTGAAATCCTTGTCTCACACCG 59.520 50.000 0.00 0.00 38.43 4.94
1898 2466 8.391075 TCATATCTCCACTTCGTTTTTCTTTT 57.609 30.769 0.00 0.00 0.00 2.27
1899 2467 8.289618 TCATATCTCCACTTCGTTTTTCTTTTG 58.710 33.333 0.00 0.00 0.00 2.44
1900 2468 4.668289 TCTCCACTTCGTTTTTCTTTTGC 58.332 39.130 0.00 0.00 0.00 3.68
1941 2509 2.005451 CGTCAATGAAGCTTGGGAGAG 58.995 52.381 2.10 0.00 0.00 3.20
1957 2525 7.525360 GCTTGGGAGAGAAACCATTTATCAAAA 60.525 37.037 0.00 0.00 36.48 2.44
1962 2530 8.246871 GGAGAGAAACCATTTATCAAAAGAAGG 58.753 37.037 0.00 0.00 33.48 3.46
1981 2550 6.830912 AGAAGGTAAATATAGCAGCACATGA 58.169 36.000 0.00 0.00 31.82 3.07
1994 2563 5.185828 AGCAGCACATGAATAGATCCGTATA 59.814 40.000 0.00 0.00 0.00 1.47
1995 2564 5.518128 GCAGCACATGAATAGATCCGTATAG 59.482 44.000 0.00 0.00 0.00 1.31
1996 2565 6.625362 CAGCACATGAATAGATCCGTATAGT 58.375 40.000 0.00 0.00 0.00 2.12
1997 2566 6.749578 CAGCACATGAATAGATCCGTATAGTC 59.250 42.308 0.00 0.00 0.00 2.59
1998 2567 6.434340 AGCACATGAATAGATCCGTATAGTCA 59.566 38.462 0.00 0.00 31.69 3.41
1999 2568 6.528423 GCACATGAATAGATCCGTATAGTCAC 59.472 42.308 0.00 0.00 30.15 3.67
2033 2603 1.286501 GCATGCATGTTGATGGCTTG 58.713 50.000 26.79 0.00 36.22 4.01
2096 2666 3.094484 AGACAGTGCTAGCCTCTACTT 57.906 47.619 13.29 0.37 0.00 2.24
2097 2667 2.757868 AGACAGTGCTAGCCTCTACTTG 59.242 50.000 13.29 6.55 0.00 3.16
2103 2673 3.107601 TGCTAGCCTCTACTTGTCCATT 58.892 45.455 13.29 0.00 0.00 3.16
2106 2676 1.482593 AGCCTCTACTTGTCCATTCCG 59.517 52.381 0.00 0.00 0.00 4.30
2121 2691 1.622607 TTCCGCCATCTTCCACCGAT 61.623 55.000 0.00 0.00 0.00 4.18
2122 2692 1.595382 CCGCCATCTTCCACCGATC 60.595 63.158 0.00 0.00 0.00 3.69
2123 2693 1.951130 CGCCATCTTCCACCGATCG 60.951 63.158 8.51 8.51 0.00 3.69
2124 2694 1.441729 GCCATCTTCCACCGATCGA 59.558 57.895 18.66 0.00 0.00 3.59
2187 2757 1.890876 TGCTGGTTTGTCGCAGTTAT 58.109 45.000 0.00 0.00 0.00 1.89
2200 2770 5.576774 TGTCGCAGTTATCAATTGTCTACAG 59.423 40.000 5.13 0.82 0.00 2.74
2206 2776 7.278646 GCAGTTATCAATTGTCTACAGATCACA 59.721 37.037 5.13 0.00 0.00 3.58
2213 2783 9.755804 TCAATTGTCTACAGATCACATATTCTC 57.244 33.333 5.13 0.00 0.00 2.87
2214 2784 8.986847 CAATTGTCTACAGATCACATATTCTCC 58.013 37.037 0.00 0.00 0.00 3.71
2215 2785 7.904558 TTGTCTACAGATCACATATTCTCCT 57.095 36.000 0.00 0.00 0.00 3.69
2216 2786 8.996651 TTGTCTACAGATCACATATTCTCCTA 57.003 34.615 0.00 0.00 0.00 2.94
2217 2787 9.593565 TTGTCTACAGATCACATATTCTCCTAT 57.406 33.333 0.00 0.00 0.00 2.57
2218 2788 9.018582 TGTCTACAGATCACATATTCTCCTATG 57.981 37.037 0.00 0.00 35.61 2.23
2219 2789 8.465999 GTCTACAGATCACATATTCTCCTATGG 58.534 40.741 0.00 0.00 34.11 2.74
2220 2790 6.047511 ACAGATCACATATTCTCCTATGGC 57.952 41.667 0.00 0.00 34.11 4.40
2221 2791 5.107824 CAGATCACATATTCTCCTATGGCG 58.892 45.833 0.00 0.00 34.11 5.69
2222 2792 3.319137 TCACATATTCTCCTATGGCGC 57.681 47.619 0.00 0.00 34.11 6.53
2223 2793 2.028112 TCACATATTCTCCTATGGCGCC 60.028 50.000 22.73 22.73 34.11 6.53
2224 2794 1.279271 ACATATTCTCCTATGGCGCCC 59.721 52.381 26.77 6.44 34.11 6.13
2225 2795 0.537188 ATATTCTCCTATGGCGCCCG 59.463 55.000 26.77 12.45 0.00 6.13
2226 2796 1.541310 TATTCTCCTATGGCGCCCGG 61.541 60.000 26.77 21.43 0.00 5.73
2227 2797 3.906400 TATTCTCCTATGGCGCCCGGA 62.906 57.143 26.77 24.37 0.00 5.14
2228 2798 4.301027 CTCCTATGGCGCCCGGAC 62.301 72.222 26.77 0.00 0.00 4.79
2230 2800 4.609018 CCTATGGCGCCCGGACAG 62.609 72.222 26.77 13.08 36.82 3.51
2241 2811 4.680237 CGGACAGCAAGCCGTGGA 62.680 66.667 0.00 0.00 42.49 4.02
2242 2812 2.045926 GGACAGCAAGCCGTGGAT 60.046 61.111 0.00 0.00 0.00 3.41
2243 2813 1.220749 GGACAGCAAGCCGTGGATA 59.779 57.895 0.00 0.00 0.00 2.59
2244 2814 0.811616 GGACAGCAAGCCGTGGATAG 60.812 60.000 0.00 0.00 0.00 2.08
2245 2815 0.811616 GACAGCAAGCCGTGGATAGG 60.812 60.000 0.00 0.00 0.00 2.57
2246 2816 1.524621 CAGCAAGCCGTGGATAGGG 60.525 63.158 0.00 0.00 34.94 3.53
2252 2822 2.109799 CCGTGGATAGGGCTGCTG 59.890 66.667 0.00 0.00 0.00 4.41
2253 2823 2.590007 CGTGGATAGGGCTGCTGC 60.590 66.667 7.10 7.10 38.76 5.25
2254 2824 2.590007 GTGGATAGGGCTGCTGCG 60.590 66.667 9.65 0.00 40.82 5.18
2255 2825 3.865383 TGGATAGGGCTGCTGCGG 61.865 66.667 9.65 3.55 40.82 5.69
2256 2826 4.632974 GGATAGGGCTGCTGCGGG 62.633 72.222 10.99 0.00 40.82 6.13
2257 2827 4.632974 GATAGGGCTGCTGCGGGG 62.633 72.222 10.99 0.00 40.82 5.73
2284 2854 2.260434 GCATGTGCACCCAAGCAG 59.740 61.111 15.69 0.00 46.69 4.24
2285 2855 2.567497 GCATGTGCACCCAAGCAGT 61.567 57.895 15.69 0.00 46.69 4.40
2286 2856 1.582968 CATGTGCACCCAAGCAGTC 59.417 57.895 15.69 0.00 46.69 3.51
2287 2857 0.892358 CATGTGCACCCAAGCAGTCT 60.892 55.000 15.69 0.00 46.69 3.24
2288 2858 0.178981 ATGTGCACCCAAGCAGTCTT 60.179 50.000 15.69 0.00 46.69 3.01
2289 2859 0.472044 TGTGCACCCAAGCAGTCTTA 59.528 50.000 15.69 0.00 46.69 2.10
2290 2860 1.073763 TGTGCACCCAAGCAGTCTTAT 59.926 47.619 15.69 0.00 46.69 1.73
2291 2861 1.470098 GTGCACCCAAGCAGTCTTATG 59.530 52.381 5.22 0.00 46.69 1.90
2292 2862 0.453390 GCACCCAAGCAGTCTTATGC 59.547 55.000 0.00 0.00 46.88 3.14
2299 2869 3.776616 GCAGTCTTATGCAGAGGCT 57.223 52.632 1.41 1.41 45.77 4.58
2300 2870 1.580815 GCAGTCTTATGCAGAGGCTC 58.419 55.000 6.34 6.34 45.77 4.70
2301 2871 1.809651 GCAGTCTTATGCAGAGGCTCC 60.810 57.143 11.71 0.00 45.77 4.70
2302 2872 1.761784 CAGTCTTATGCAGAGGCTCCT 59.238 52.381 11.71 0.00 41.91 3.69
2303 2873 1.761784 AGTCTTATGCAGAGGCTCCTG 59.238 52.381 11.71 10.01 41.91 3.86
2312 2882 2.768698 CAGAGGCTCCTGCTAATCATG 58.231 52.381 11.71 0.00 39.59 3.07
2313 2883 2.104451 CAGAGGCTCCTGCTAATCATGT 59.896 50.000 11.71 0.00 39.59 3.21
2314 2884 2.104451 AGAGGCTCCTGCTAATCATGTG 59.896 50.000 11.71 0.00 39.59 3.21
2315 2885 0.950116 GGCTCCTGCTAATCATGTGC 59.050 55.000 0.00 0.00 39.59 4.57
2316 2886 1.671979 GCTCCTGCTAATCATGTGCA 58.328 50.000 0.00 0.00 32.51 4.57
2317 2887 1.332997 GCTCCTGCTAATCATGTGCAC 59.667 52.381 10.75 10.75 32.51 4.57
2318 2888 1.596260 CTCCTGCTAATCATGTGCACG 59.404 52.381 13.13 0.00 32.91 5.34
2319 2889 0.028505 CCTGCTAATCATGTGCACGC 59.971 55.000 13.13 8.02 32.91 5.34
2320 2890 0.028505 CTGCTAATCATGTGCACGCC 59.971 55.000 13.13 0.00 32.91 5.68
2321 2891 0.392863 TGCTAATCATGTGCACGCCT 60.393 50.000 13.13 0.00 0.00 5.52
2322 2892 0.305922 GCTAATCATGTGCACGCCTC 59.694 55.000 13.13 0.00 0.00 4.70
2323 2893 1.655484 CTAATCATGTGCACGCCTCA 58.345 50.000 13.13 0.00 0.00 3.86
2324 2894 1.328680 CTAATCATGTGCACGCCTCAC 59.671 52.381 13.13 0.00 35.14 3.51
2325 2895 1.308069 AATCATGTGCACGCCTCACC 61.308 55.000 13.13 0.00 33.71 4.02
2326 2896 2.189191 ATCATGTGCACGCCTCACCT 62.189 55.000 13.13 0.00 33.71 4.00
2327 2897 2.359107 ATGTGCACGCCTCACCTG 60.359 61.111 13.13 0.00 33.71 4.00
2328 2898 3.182590 ATGTGCACGCCTCACCTGT 62.183 57.895 13.13 0.00 33.71 4.00
2329 2899 3.349006 GTGCACGCCTCACCTGTG 61.349 66.667 0.00 0.00 36.70 3.66
2332 2902 3.349006 CACGCCTCACCTGTGCAC 61.349 66.667 10.75 10.75 0.00 4.57
2333 2903 4.626081 ACGCCTCACCTGTGCACC 62.626 66.667 15.69 0.00 0.00 5.01
2334 2904 4.624364 CGCCTCACCTGTGCACCA 62.624 66.667 15.69 1.31 0.00 4.17
2335 2905 2.034687 GCCTCACCTGTGCACCAT 59.965 61.111 15.69 0.00 0.00 3.55
2336 2906 2.338015 GCCTCACCTGTGCACCATG 61.338 63.158 15.69 9.99 0.00 3.66
2337 2907 2.338015 CCTCACCTGTGCACCATGC 61.338 63.158 15.69 0.00 45.29 4.06
2338 2908 2.282391 TCACCTGTGCACCATGCC 60.282 61.111 15.69 0.00 44.23 4.40
2339 2909 3.740397 CACCTGTGCACCATGCCG 61.740 66.667 15.69 0.00 44.23 5.69
2340 2910 4.269523 ACCTGTGCACCATGCCGT 62.270 61.111 15.69 0.00 44.23 5.68
2341 2911 3.740397 CCTGTGCACCATGCCGTG 61.740 66.667 15.69 0.00 44.23 4.94
2349 2919 4.802051 CCATGCCGTGGGAGGTGG 62.802 72.222 0.00 0.00 44.79 4.61
2350 2920 4.802051 CATGCCGTGGGAGGTGGG 62.802 72.222 0.00 0.00 0.00 4.61
2354 2924 3.396570 CCGTGGGAGGTGGGGTAC 61.397 72.222 0.00 0.00 0.00 3.34
2355 2925 2.284405 CGTGGGAGGTGGGGTACT 60.284 66.667 0.00 0.00 0.00 2.73
2356 2926 2.656069 CGTGGGAGGTGGGGTACTG 61.656 68.421 0.00 0.00 0.00 2.74
2357 2927 2.609610 TGGGAGGTGGGGTACTGC 60.610 66.667 0.00 0.00 0.00 4.40
2358 2928 2.609610 GGGAGGTGGGGTACTGCA 60.610 66.667 0.00 0.00 0.00 4.41
2359 2929 2.001269 GGGAGGTGGGGTACTGCAT 61.001 63.158 0.00 0.00 0.00 3.96
2360 2930 1.224592 GGAGGTGGGGTACTGCATG 59.775 63.158 0.00 0.00 0.00 4.06
2361 2931 1.452108 GAGGTGGGGTACTGCATGC 60.452 63.158 11.82 11.82 0.00 4.06
2362 2932 1.915078 GAGGTGGGGTACTGCATGCT 61.915 60.000 20.33 1.26 0.00 3.79
2363 2933 1.750399 GGTGGGGTACTGCATGCTG 60.750 63.158 21.60 21.60 0.00 4.41
2364 2934 1.002134 GTGGGGTACTGCATGCTGT 60.002 57.895 29.56 29.56 0.00 4.40
2365 2935 1.002257 TGGGGTACTGCATGCTGTG 60.002 57.895 32.92 19.18 0.00 3.66
2378 2948 4.175489 CTGTGCATGCGGCTGCTC 62.175 66.667 20.27 17.29 45.15 4.26
2392 2962 4.400961 GCTCCTGCCTCGGTGCTT 62.401 66.667 0.00 0.00 39.73 3.91
2393 2963 2.435586 CTCCTGCCTCGGTGCTTG 60.436 66.667 0.00 0.00 0.00 4.01
2394 2964 3.241530 TCCTGCCTCGGTGCTTGT 61.242 61.111 0.00 0.00 0.00 3.16
2395 2965 3.052082 CCTGCCTCGGTGCTTGTG 61.052 66.667 0.00 0.00 0.00 3.33
2396 2966 3.730761 CTGCCTCGGTGCTTGTGC 61.731 66.667 0.00 0.00 40.20 4.57
2438 3008 4.063967 CGTCACCCGTGCAGGCTA 62.064 66.667 0.00 0.00 39.21 3.93
2439 3009 2.434359 GTCACCCGTGCAGGCTAC 60.434 66.667 0.00 0.00 39.21 3.58
2440 3010 2.920384 TCACCCGTGCAGGCTACA 60.920 61.111 0.00 0.00 39.21 2.74
2441 3011 2.434884 CACCCGTGCAGGCTACAG 60.435 66.667 0.00 0.00 39.21 2.74
2442 3012 4.394712 ACCCGTGCAGGCTACAGC 62.395 66.667 0.00 0.00 39.21 4.40
2443 3013 4.087892 CCCGTGCAGGCTACAGCT 62.088 66.667 0.00 0.00 41.70 4.24
2444 3014 2.816958 CCGTGCAGGCTACAGCTG 60.817 66.667 13.48 13.48 41.70 4.24
2445 3015 3.494336 CGTGCAGGCTACAGCTGC 61.494 66.667 15.27 14.70 41.86 5.25
2446 3016 2.046507 GTGCAGGCTACAGCTGCT 60.047 61.111 15.27 0.00 41.95 4.24
2447 3017 2.046604 TGCAGGCTACAGCTGCTG 60.047 61.111 27.02 27.02 41.95 4.41
2448 3018 3.507009 GCAGGCTACAGCTGCTGC 61.507 66.667 28.39 22.65 44.53 5.25
2458 3028 4.208632 GCTGCTGCTTCGGTGTAT 57.791 55.556 8.53 0.00 36.03 2.29
2459 3029 1.717937 GCTGCTGCTTCGGTGTATG 59.282 57.895 8.53 0.00 36.03 2.39
2460 3030 1.717937 CTGCTGCTTCGGTGTATGC 59.282 57.895 0.00 0.00 0.00 3.14
2461 3031 2.028766 CTGCTGCTTCGGTGTATGCG 62.029 60.000 0.00 0.00 0.00 4.73
2462 3032 2.703409 CTGCTTCGGTGTATGCGC 59.297 61.111 0.00 0.00 0.00 6.09
2463 3033 2.047750 TGCTTCGGTGTATGCGCA 60.048 55.556 14.96 14.96 0.00 6.09
2464 3034 1.634757 CTGCTTCGGTGTATGCGCAA 61.635 55.000 17.11 0.11 0.00 4.85
2465 3035 1.024046 TGCTTCGGTGTATGCGCAAT 61.024 50.000 17.11 5.81 0.00 3.56
2466 3036 0.589729 GCTTCGGTGTATGCGCAATG 60.590 55.000 17.11 0.00 0.00 2.82
2467 3037 0.726827 CTTCGGTGTATGCGCAATGT 59.273 50.000 17.11 0.00 0.00 2.71
2468 3038 1.130373 CTTCGGTGTATGCGCAATGTT 59.870 47.619 17.11 0.00 0.00 2.71
2469 3039 0.724549 TCGGTGTATGCGCAATGTTC 59.275 50.000 17.11 3.56 0.00 3.18
2470 3040 0.445829 CGGTGTATGCGCAATGTTCA 59.554 50.000 17.11 6.72 0.00 3.18
2471 3041 1.135831 CGGTGTATGCGCAATGTTCAA 60.136 47.619 17.11 0.00 0.00 2.69
2472 3042 2.250188 GGTGTATGCGCAATGTTCAAC 58.750 47.619 17.11 8.54 0.00 3.18
2473 3043 1.904412 GTGTATGCGCAATGTTCAACG 59.096 47.619 17.11 0.00 0.00 4.10
2474 3044 1.801178 TGTATGCGCAATGTTCAACGA 59.199 42.857 17.11 0.00 0.00 3.85
2475 3045 2.166007 GTATGCGCAATGTTCAACGAC 58.834 47.619 17.11 0.00 0.00 4.34
2476 3046 0.452618 ATGCGCAATGTTCAACGACG 60.453 50.000 17.11 0.00 0.00 5.12
2477 3047 2.417553 GCGCAATGTTCAACGACGC 61.418 57.895 0.30 1.36 37.93 5.19
2478 3048 1.792057 CGCAATGTTCAACGACGCC 60.792 57.895 0.00 0.00 0.00 5.68
2479 3049 1.281353 GCAATGTTCAACGACGCCA 59.719 52.632 0.00 0.00 0.00 5.69
2480 3050 0.109781 GCAATGTTCAACGACGCCAT 60.110 50.000 0.00 0.00 0.00 4.40
2481 3051 1.129624 GCAATGTTCAACGACGCCATA 59.870 47.619 0.00 0.00 0.00 2.74
2482 3052 2.769376 CAATGTTCAACGACGCCATAC 58.231 47.619 0.00 0.00 0.00 2.39
2483 3053 2.087501 ATGTTCAACGACGCCATACA 57.912 45.000 0.00 0.00 0.00 2.29
2484 3054 2.087501 TGTTCAACGACGCCATACAT 57.912 45.000 0.00 0.00 0.00 2.29
2485 3055 1.996898 TGTTCAACGACGCCATACATC 59.003 47.619 0.00 0.00 0.00 3.06
2486 3056 1.326548 GTTCAACGACGCCATACATCC 59.673 52.381 0.00 0.00 0.00 3.51
2487 3057 0.533032 TCAACGACGCCATACATCCA 59.467 50.000 0.00 0.00 0.00 3.41
2488 3058 0.930310 CAACGACGCCATACATCCAG 59.070 55.000 0.00 0.00 0.00 3.86
2489 3059 0.821517 AACGACGCCATACATCCAGA 59.178 50.000 0.00 0.00 0.00 3.86
2490 3060 0.102481 ACGACGCCATACATCCAGAC 59.898 55.000 0.00 0.00 0.00 3.51
2491 3061 0.385751 CGACGCCATACATCCAGACT 59.614 55.000 0.00 0.00 0.00 3.24
2492 3062 1.202417 CGACGCCATACATCCAGACTT 60.202 52.381 0.00 0.00 0.00 3.01
2493 3063 2.474816 GACGCCATACATCCAGACTTC 58.525 52.381 0.00 0.00 0.00 3.01
2494 3064 2.101582 GACGCCATACATCCAGACTTCT 59.898 50.000 0.00 0.00 0.00 2.85
2495 3065 2.501723 ACGCCATACATCCAGACTTCTT 59.498 45.455 0.00 0.00 0.00 2.52
2496 3066 3.126831 CGCCATACATCCAGACTTCTTC 58.873 50.000 0.00 0.00 0.00 2.87
2497 3067 3.430790 CGCCATACATCCAGACTTCTTCA 60.431 47.826 0.00 0.00 0.00 3.02
2498 3068 4.125703 GCCATACATCCAGACTTCTTCAG 58.874 47.826 0.00 0.00 0.00 3.02
2499 3069 4.125703 CCATACATCCAGACTTCTTCAGC 58.874 47.826 0.00 0.00 0.00 4.26
2500 3070 4.141756 CCATACATCCAGACTTCTTCAGCT 60.142 45.833 0.00 0.00 0.00 4.24
2501 3071 3.608316 ACATCCAGACTTCTTCAGCTC 57.392 47.619 0.00 0.00 0.00 4.09
2502 3072 2.902486 ACATCCAGACTTCTTCAGCTCA 59.098 45.455 0.00 0.00 0.00 4.26
2503 3073 3.518705 ACATCCAGACTTCTTCAGCTCAT 59.481 43.478 0.00 0.00 0.00 2.90
2504 3074 3.606595 TCCAGACTTCTTCAGCTCATG 57.393 47.619 0.00 0.00 0.00 3.07
2505 3075 2.008329 CCAGACTTCTTCAGCTCATGC 58.992 52.381 0.00 0.00 40.05 4.06
2515 3085 3.869272 GCTCATGCTCCGGTTGCG 61.869 66.667 15.08 4.78 36.03 4.85
2516 3086 3.197790 CTCATGCTCCGGTTGCGG 61.198 66.667 15.08 10.89 0.00 5.69
2517 3087 3.958147 CTCATGCTCCGGTTGCGGT 62.958 63.158 15.08 6.07 0.00 5.68
2518 3088 3.803082 CATGCTCCGGTTGCGGTG 61.803 66.667 15.08 12.70 0.00 4.94
2527 3097 4.280019 GTTGCGGTGGTCCCCCTT 62.280 66.667 0.00 0.00 0.00 3.95
2528 3098 4.278513 TTGCGGTGGTCCCCCTTG 62.279 66.667 0.00 0.00 0.00 3.61
2533 3103 2.612746 GTGGTCCCCCTTGGCCTA 60.613 66.667 3.32 0.00 33.06 3.93
2534 3104 2.286121 TGGTCCCCCTTGGCCTAG 60.286 66.667 7.29 7.29 33.06 3.02
2535 3105 3.810188 GGTCCCCCTTGGCCTAGC 61.810 72.222 8.91 0.00 0.00 3.42
2536 3106 2.692741 GTCCCCCTTGGCCTAGCT 60.693 66.667 8.91 0.00 0.00 3.32
2537 3107 2.692368 TCCCCCTTGGCCTAGCTG 60.692 66.667 8.91 1.97 0.00 4.24
2538 3108 4.512914 CCCCCTTGGCCTAGCTGC 62.513 72.222 8.91 0.00 0.00 5.25
2539 3109 4.864334 CCCCTTGGCCTAGCTGCG 62.864 72.222 8.91 0.00 0.00 5.18
2540 3110 4.864334 CCCTTGGCCTAGCTGCGG 62.864 72.222 8.91 0.64 0.00 5.69
2541 3111 3.785859 CCTTGGCCTAGCTGCGGA 61.786 66.667 8.91 0.00 0.00 5.54
2542 3112 2.507944 CTTGGCCTAGCTGCGGAT 59.492 61.111 3.32 0.00 0.00 4.18
2543 3113 1.596477 CTTGGCCTAGCTGCGGATC 60.596 63.158 3.32 0.00 0.00 3.36
2544 3114 3.445518 TTGGCCTAGCTGCGGATCG 62.446 63.158 3.32 0.00 0.00 3.69
2545 3115 3.917760 GGCCTAGCTGCGGATCGT 61.918 66.667 7.97 0.00 0.00 3.73
2546 3116 2.355244 GCCTAGCTGCGGATCGTC 60.355 66.667 7.97 0.00 0.00 4.20
2547 3117 2.336809 CCTAGCTGCGGATCGTCC 59.663 66.667 0.00 0.00 0.00 4.79
2568 3138 3.791640 TGGATCAGCCACGACACT 58.208 55.556 0.00 0.00 43.33 3.55
2569 3139 1.591703 TGGATCAGCCACGACACTC 59.408 57.895 0.00 0.00 43.33 3.51
2570 3140 1.153549 GGATCAGCCACGACACTCC 60.154 63.158 0.00 0.00 36.34 3.85
2571 3141 1.608717 GGATCAGCCACGACACTCCT 61.609 60.000 0.00 0.00 36.34 3.69
2572 3142 0.247736 GATCAGCCACGACACTCCTT 59.752 55.000 0.00 0.00 0.00 3.36
2573 3143 0.036952 ATCAGCCACGACACTCCTTG 60.037 55.000 0.00 0.00 0.00 3.61
2574 3144 2.031163 AGCCACGACACTCCTTGC 59.969 61.111 0.00 0.00 0.00 4.01
2575 3145 3.414700 GCCACGACACTCCTTGCG 61.415 66.667 0.00 0.00 0.00 4.85
2576 3146 2.738521 CCACGACACTCCTTGCGG 60.739 66.667 0.00 0.00 0.00 5.69
2577 3147 3.414700 CACGACACTCCTTGCGGC 61.415 66.667 0.00 0.00 0.00 6.53
2578 3148 4.681978 ACGACACTCCTTGCGGCC 62.682 66.667 0.00 0.00 0.00 6.13
2580 3150 4.681978 GACACTCCTTGCGGCCGT 62.682 66.667 28.70 2.08 0.00 5.68
2581 3151 4.250305 ACACTCCTTGCGGCCGTT 62.250 61.111 28.70 0.00 0.00 4.44
2582 3152 2.978010 CACTCCTTGCGGCCGTTT 60.978 61.111 28.70 0.00 0.00 3.60
2583 3153 2.668550 ACTCCTTGCGGCCGTTTC 60.669 61.111 28.70 11.04 0.00 2.78
2584 3154 2.668212 CTCCTTGCGGCCGTTTCA 60.668 61.111 28.70 13.99 0.00 2.69
2585 3155 2.668212 TCCTTGCGGCCGTTTCAG 60.668 61.111 28.70 16.55 0.00 3.02
2586 3156 2.978010 CCTTGCGGCCGTTTCAGT 60.978 61.111 28.70 0.00 0.00 3.41
2587 3157 2.252260 CTTGCGGCCGTTTCAGTG 59.748 61.111 28.70 9.18 0.00 3.66
2588 3158 3.254014 CTTGCGGCCGTTTCAGTGG 62.254 63.158 28.70 6.76 0.00 4.00
2591 3161 3.047877 CGGCCGTTTCAGTGGGAC 61.048 66.667 19.50 0.00 0.00 4.46
2592 3162 2.112297 GGCCGTTTCAGTGGGACA 59.888 61.111 0.00 0.00 0.00 4.02
2593 3163 1.303317 GGCCGTTTCAGTGGGACAT 60.303 57.895 0.00 0.00 44.52 3.06
2594 3164 1.586154 GGCCGTTTCAGTGGGACATG 61.586 60.000 0.00 0.00 44.52 3.21
2595 3165 1.875963 CCGTTTCAGTGGGACATGC 59.124 57.895 0.00 0.00 44.52 4.06
2596 3166 1.497278 CGTTTCAGTGGGACATGCG 59.503 57.895 0.00 0.00 44.52 4.73
2597 3167 1.875963 GTTTCAGTGGGACATGCGG 59.124 57.895 0.00 0.00 44.52 5.69
2598 3168 1.971167 TTTCAGTGGGACATGCGGC 60.971 57.895 0.00 0.00 44.52 6.53
2599 3169 4.758251 TCAGTGGGACATGCGGCG 62.758 66.667 0.51 0.51 44.52 6.46
2610 3180 4.838152 TGCGGCGCATCCCTCTTC 62.838 66.667 33.07 0.00 31.71 2.87
2611 3181 4.838152 GCGGCGCATCCCTCTTCA 62.838 66.667 29.21 0.00 0.00 3.02
2612 3182 2.892425 CGGCGCATCCCTCTTCAC 60.892 66.667 10.83 0.00 0.00 3.18
2613 3183 2.514824 GGCGCATCCCTCTTCACC 60.515 66.667 10.83 0.00 0.00 4.02
2614 3184 2.892425 GCGCATCCCTCTTCACCG 60.892 66.667 0.30 0.00 0.00 4.94
2615 3185 2.892640 CGCATCCCTCTTCACCGA 59.107 61.111 0.00 0.00 0.00 4.69
2616 3186 1.519455 CGCATCCCTCTTCACCGAC 60.519 63.158 0.00 0.00 0.00 4.79
2617 3187 1.153349 GCATCCCTCTTCACCGACC 60.153 63.158 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.082523 CACCATGGCCGACGAGGT 62.083 66.667 13.04 0.00 43.70 3.85
107 108 4.383602 CAAAACGCTCCCGCACCG 62.384 66.667 0.00 0.00 38.22 4.94
110 111 2.668212 CTCCAAAACGCTCCCGCA 60.668 61.111 0.00 0.00 38.22 5.69
167 168 3.732849 CTTGTCCTCCCCTGGCCC 61.733 72.222 0.00 0.00 0.00 5.80
202 203 4.961511 AAACAGACAGCGCGCGGA 62.962 61.111 36.82 0.00 0.00 5.54
206 207 4.389576 GGCCAAACAGACAGCGCG 62.390 66.667 0.00 0.00 0.00 6.86
237 238 2.052104 CCATTCCCGGCCCAAGTTC 61.052 63.158 0.00 0.00 0.00 3.01
265 266 3.555518 GACCGTCGTACGTTTTTAGTCT 58.444 45.455 16.05 0.00 40.58 3.24
269 270 2.783828 TGGACCGTCGTACGTTTTTA 57.216 45.000 16.05 0.00 40.58 1.52
280 281 2.877691 GGCTGCAAATGGACCGTC 59.122 61.111 0.50 0.00 0.00 4.79
288 289 4.424566 CAAGGCGCGGCTGCAAAT 62.425 61.111 36.94 17.72 42.97 2.32
302 303 0.600057 GACAAAGCAGGCCTTCCAAG 59.400 55.000 0.00 0.00 31.99 3.61
339 869 2.887568 CATCCTGTCTGTCCGCGC 60.888 66.667 0.00 0.00 0.00 6.86
340 870 2.202797 CCATCCTGTCTGTCCGCG 60.203 66.667 0.00 0.00 0.00 6.46
347 877 3.461773 CGCGACCCCATCCTGTCT 61.462 66.667 0.00 0.00 0.00 3.41
370 900 8.782137 AAAACCATATGATATAAGGCCAACTT 57.218 30.769 5.01 0.00 43.28 2.66
382 912 6.876789 ACACGACACAAGAAAACCATATGATA 59.123 34.615 3.65 0.00 0.00 2.15
383 913 5.705441 ACACGACACAAGAAAACCATATGAT 59.295 36.000 3.65 0.00 0.00 2.45
384 914 5.060506 ACACGACACAAGAAAACCATATGA 58.939 37.500 3.65 0.00 0.00 2.15
388 918 2.616842 GGACACGACACAAGAAAACCAT 59.383 45.455 0.00 0.00 0.00 3.55
419 949 1.207791 GAGGCAGGGAGGAGATGAAA 58.792 55.000 0.00 0.00 0.00 2.69
435 965 2.290641 CCACGTCAAGAACAAAAGGAGG 59.709 50.000 0.00 0.00 0.00 4.30
465 995 1.952133 CCGAAGCGACAACCGTGAA 60.952 57.895 0.00 0.00 41.15 3.18
466 996 2.355363 CCGAAGCGACAACCGTGA 60.355 61.111 0.00 0.00 41.15 4.35
467 997 2.355363 TCCGAAGCGACAACCGTG 60.355 61.111 0.00 0.00 41.15 4.94
468 998 2.355481 GTCCGAAGCGACAACCGT 60.355 61.111 0.00 0.00 41.15 4.83
469 999 1.683790 GATGTCCGAAGCGACAACCG 61.684 60.000 0.00 0.00 45.49 4.44
470 1000 0.669318 TGATGTCCGAAGCGACAACC 60.669 55.000 0.00 0.00 45.49 3.77
471 1001 0.438830 GTGATGTCCGAAGCGACAAC 59.561 55.000 0.00 0.00 45.49 3.32
472 1002 0.032815 TGTGATGTCCGAAGCGACAA 59.967 50.000 0.00 0.00 45.49 3.18
473 1003 0.388520 CTGTGATGTCCGAAGCGACA 60.389 55.000 0.00 0.00 46.36 4.35
474 1004 1.687494 GCTGTGATGTCCGAAGCGAC 61.687 60.000 0.00 0.00 0.00 5.19
475 1005 1.446099 GCTGTGATGTCCGAAGCGA 60.446 57.895 0.00 0.00 0.00 4.93
476 1006 2.456119 GGCTGTGATGTCCGAAGCG 61.456 63.158 0.00 0.00 34.66 4.68
477 1007 1.078848 AGGCTGTGATGTCCGAAGC 60.079 57.895 0.00 0.00 0.00 3.86
478 1008 1.364626 GCAGGCTGTGATGTCCGAAG 61.365 60.000 17.16 0.00 0.00 3.79
479 1009 1.375908 GCAGGCTGTGATGTCCGAA 60.376 57.895 17.16 0.00 0.00 4.30
480 1010 1.830587 AAGCAGGCTGTGATGTCCGA 61.831 55.000 17.16 0.00 0.00 4.55
481 1011 1.376424 AAGCAGGCTGTGATGTCCG 60.376 57.895 17.16 0.00 0.00 4.79
482 1012 1.930908 GCAAGCAGGCTGTGATGTCC 61.931 60.000 17.16 0.00 0.00 4.02
483 1013 0.959372 AGCAAGCAGGCTGTGATGTC 60.959 55.000 17.16 8.88 43.89 3.06
484 1014 0.538977 AAGCAAGCAGGCTGTGATGT 60.539 50.000 17.16 0.00 45.07 3.06
485 1015 0.601558 AAAGCAAGCAGGCTGTGATG 59.398 50.000 17.16 13.28 45.07 3.07
486 1016 1.271656 GAAAAGCAAGCAGGCTGTGAT 59.728 47.619 17.16 2.87 45.07 3.06
487 1017 0.670162 GAAAAGCAAGCAGGCTGTGA 59.330 50.000 17.16 0.00 45.07 3.58
488 1018 0.672342 AGAAAAGCAAGCAGGCTGTG 59.328 50.000 17.16 8.59 45.07 3.66
489 1019 1.068127 CAAGAAAAGCAAGCAGGCTGT 59.932 47.619 17.16 0.00 45.07 4.40
490 1020 1.338973 TCAAGAAAAGCAAGCAGGCTG 59.661 47.619 10.94 10.94 45.07 4.85
492 1022 1.603931 GGTCAAGAAAAGCAAGCAGGC 60.604 52.381 0.00 0.00 0.00 4.85
493 1023 1.335324 CGGTCAAGAAAAGCAAGCAGG 60.335 52.381 0.00 0.00 0.00 4.85
494 1024 1.927710 GCGGTCAAGAAAAGCAAGCAG 60.928 52.381 0.00 0.00 0.00 4.24
548 1078 3.436704 TCGAAGAAATTGATGTGCAGTCC 59.563 43.478 0.00 0.00 0.00 3.85
581 1111 6.544197 TCAACAAACAGTTAGCACCATCTTTA 59.456 34.615 0.00 0.00 38.74 1.85
586 1116 6.127647 CCATATCAACAAACAGTTAGCACCAT 60.128 38.462 0.00 0.00 38.74 3.55
696 1226 0.447801 CAACAATACGCCTGCTGTCC 59.552 55.000 0.00 0.00 0.00 4.02
707 1237 4.506288 GGCACCACAAAAAGTCAACAATAC 59.494 41.667 0.00 0.00 0.00 1.89
728 1258 3.982475 TCTATGATTGTCATCACGAGGC 58.018 45.455 0.00 0.00 42.46 4.70
743 1275 5.835280 TGCCATCTTCTGTACTCATCTATGA 59.165 40.000 0.00 0.00 35.16 2.15
744 1276 6.094193 TGCCATCTTCTGTACTCATCTATG 57.906 41.667 0.00 0.00 0.00 2.23
746 1278 5.422012 TGTTGCCATCTTCTGTACTCATCTA 59.578 40.000 0.00 0.00 0.00 1.98
747 1279 4.223700 TGTTGCCATCTTCTGTACTCATCT 59.776 41.667 0.00 0.00 0.00 2.90
799 1338 6.183360 GCTATTGCATTATTGTGAAGGGAGTT 60.183 38.462 0.00 0.00 39.41 3.01
802 1341 5.448654 AGCTATTGCATTATTGTGAAGGGA 58.551 37.500 1.12 0.00 42.74 4.20
882 1424 8.512966 ACCAGCTATTTCTTCTTTCTTAATCC 57.487 34.615 0.00 0.00 0.00 3.01
888 1430 6.547402 AGGAAACCAGCTATTTCTTCTTTCT 58.453 36.000 17.62 6.74 36.49 2.52
896 1441 5.921962 AATGGAAGGAAACCAGCTATTTC 57.078 39.130 12.25 12.25 40.89 2.17
914 1459 0.832626 GGATGGCCCAAGGAAAATGG 59.167 55.000 0.00 0.00 37.71 3.16
932 1477 0.535102 AAGCTCAGTTCACAACGGGG 60.535 55.000 0.00 0.00 36.23 5.73
939 1484 6.868864 TCTCTGTTTATACAAGCTCAGTTCAC 59.131 38.462 0.00 0.00 32.92 3.18
947 1492 6.145696 GTCGTTGTTCTCTGTTTATACAAGCT 59.854 38.462 0.00 0.00 32.92 3.74
948 1493 6.297353 GTCGTTGTTCTCTGTTTATACAAGC 58.703 40.000 0.00 0.00 32.92 4.01
953 1498 5.471556 TGGGTCGTTGTTCTCTGTTTATA 57.528 39.130 0.00 0.00 0.00 0.98
959 1504 1.726791 CGATTGGGTCGTTGTTCTCTG 59.273 52.381 0.00 0.00 45.19 3.35
970 1515 1.657751 GCTTGGCCTTCGATTGGGTC 61.658 60.000 3.32 2.78 0.00 4.46
972 1517 1.250154 TTGCTTGGCCTTCGATTGGG 61.250 55.000 3.32 1.86 0.00 4.12
973 1518 0.109132 GTTGCTTGGCCTTCGATTGG 60.109 55.000 3.32 1.06 0.00 3.16
979 1524 1.538950 CTCTTGAGTTGCTTGGCCTTC 59.461 52.381 3.32 0.00 0.00 3.46
984 1529 3.120408 CGTTCATCTCTTGAGTTGCTTGG 60.120 47.826 4.35 0.00 35.27 3.61
985 1530 3.666374 GCGTTCATCTCTTGAGTTGCTTG 60.666 47.826 4.35 0.00 35.27 4.01
1131 1676 2.249309 CACAGCTTGAACGCCACG 59.751 61.111 0.00 0.00 0.00 4.94
1137 1682 1.491563 CGCGTACCACAGCTTGAAC 59.508 57.895 0.00 0.00 0.00 3.18
1157 1702 1.538512 TGAGGTAGTCGTCGAACTTGG 59.461 52.381 0.00 0.00 0.00 3.61
1158 1703 2.582687 GTGAGGTAGTCGTCGAACTTG 58.417 52.381 0.00 0.00 0.00 3.16
1192 1737 0.322322 TTAAGCCCGCGGAAGAAAGA 59.678 50.000 30.73 2.79 0.00 2.52
1225 1770 0.034186 TTGAGCGGCCATTGGAAGAT 60.034 50.000 6.95 0.00 0.00 2.40
1336 1881 1.330655 ACGCGGGATGGAAGATGAGT 61.331 55.000 12.47 0.00 0.00 3.41
1347 1892 2.584608 CCAAGGAGAACGCGGGAT 59.415 61.111 12.47 0.00 0.00 3.85
1350 1895 1.515521 AAAAGCCAAGGAGAACGCGG 61.516 55.000 12.47 0.00 0.00 6.46
1352 1897 1.197949 GAGAAAAGCCAAGGAGAACGC 59.802 52.381 0.00 0.00 0.00 4.84
1353 1898 1.807142 GGAGAAAAGCCAAGGAGAACG 59.193 52.381 0.00 0.00 0.00 3.95
1355 1900 1.271379 CCGGAGAAAAGCCAAGGAGAA 60.271 52.381 0.00 0.00 0.00 2.87
1358 1903 0.768622 TTCCGGAGAAAAGCCAAGGA 59.231 50.000 3.34 0.00 0.00 3.36
1378 1943 6.566564 CGAGTGCATTTGATTGTTCTAGTGTT 60.567 38.462 0.00 0.00 0.00 3.32
1386 1951 3.988379 ACACGAGTGCATTTGATTGTT 57.012 38.095 3.02 0.00 0.00 2.83
1388 1953 3.058016 AGGAACACGAGTGCATTTGATTG 60.058 43.478 3.02 0.00 0.00 2.67
1391 1956 2.143122 GAGGAACACGAGTGCATTTGA 58.857 47.619 3.02 0.00 0.00 2.69
1392 1957 2.146342 AGAGGAACACGAGTGCATTTG 58.854 47.619 2.76 0.00 0.00 2.32
1399 1967 5.638783 CGTAGAAATTAGAGGAACACGAGT 58.361 41.667 0.00 0.00 0.00 4.18
1402 1970 4.421948 AGCGTAGAAATTAGAGGAACACG 58.578 43.478 0.00 0.00 0.00 4.49
1404 1972 6.147164 CACAAAGCGTAGAAATTAGAGGAACA 59.853 38.462 0.00 0.00 0.00 3.18
1407 1975 5.175859 CCACAAAGCGTAGAAATTAGAGGA 58.824 41.667 0.00 0.00 0.00 3.71
1409 1977 5.637810 TGACCACAAAGCGTAGAAATTAGAG 59.362 40.000 0.00 0.00 0.00 2.43
1422 1990 3.782889 AAGTGAAAGTGACCACAAAGC 57.217 42.857 2.78 0.00 35.84 3.51
1434 2002 1.321474 TGGCAGCCTGAAAGTGAAAG 58.679 50.000 14.15 0.00 0.00 2.62
1438 2006 2.119801 AGTATGGCAGCCTGAAAGTG 57.880 50.000 14.15 0.00 0.00 3.16
1439 2007 2.440409 CAAGTATGGCAGCCTGAAAGT 58.560 47.619 14.15 0.00 0.00 2.66
1440 2008 1.747355 CCAAGTATGGCAGCCTGAAAG 59.253 52.381 14.15 0.00 40.58 2.62
1441 2009 1.838112 CCAAGTATGGCAGCCTGAAA 58.162 50.000 14.15 0.00 40.58 2.69
1442 2010 3.575506 CCAAGTATGGCAGCCTGAA 57.424 52.632 14.15 0.00 40.58 3.02
1452 2020 4.760530 TCCCAGAATGTCTCCAAGTATG 57.239 45.455 0.00 0.00 0.00 2.39
1555 2123 1.305718 GAGTCCCTGAGCCTGAGGT 60.306 63.158 0.00 0.00 0.00 3.85
1567 2135 1.079057 GAGAACCCGCTTGAGTCCC 60.079 63.158 0.00 0.00 0.00 4.46
1569 2137 3.917072 AAGAGAACCCGCTTGAGTC 57.083 52.632 0.00 0.00 31.12 3.36
1574 2142 0.326264 AGATGCAAGAGAACCCGCTT 59.674 50.000 0.00 0.00 32.51 4.68
1596 2164 6.758886 AGTACTAGATGATTTTCTTCCAAGCG 59.241 38.462 0.00 0.00 0.00 4.68
1638 2206 3.117625 TGGTTACATGGTTGTGGGTACAA 60.118 43.478 0.00 0.00 44.17 2.41
1662 2230 2.289631 TGCAATGGTCACGAACTCATCT 60.290 45.455 0.00 0.00 0.00 2.90
1665 2233 1.960417 TTGCAATGGTCACGAACTCA 58.040 45.000 0.00 0.00 0.00 3.41
1676 2244 6.311935 CCATTGTACAAGAAAGATTGCAATGG 59.688 38.462 18.59 15.49 44.74 3.16
1680 2248 6.839124 ATCCATTGTACAAGAAAGATTGCA 57.161 33.333 14.65 0.00 33.28 4.08
1681 2249 8.677300 TCTAATCCATTGTACAAGAAAGATTGC 58.323 33.333 22.56 0.00 33.28 3.56
1689 2257 9.494271 GATAATGCTCTAATCCATTGTACAAGA 57.506 33.333 14.65 7.21 33.93 3.02
1718 2286 5.294306 TGCAAGCGGATATGTAAAGAGAAAG 59.706 40.000 0.00 0.00 0.00 2.62
1741 2309 1.946081 GCCACACCCCAAACAATTTTG 59.054 47.619 0.00 0.00 41.71 2.44
1752 2320 2.571548 CTGATTTCAGCCACACCCC 58.428 57.895 0.00 0.00 37.15 4.95
1794 2362 1.066143 CCAACTGGTGTAGCCTGTAGG 60.066 57.143 0.00 0.00 46.85 3.18
1806 2374 2.280592 GGAACGACGCCAACTGGT 60.281 61.111 0.00 0.00 37.57 4.00
1829 2397 2.799126 TAATGTCAATCCCTTGGCGT 57.201 45.000 0.00 0.00 39.94 5.68
1830 2398 2.951642 ACATAATGTCAATCCCTTGGCG 59.048 45.455 0.00 0.00 39.94 5.69
1842 2410 7.119699 TGTGAGACAAGGATTTCACATAATGTC 59.880 37.037 2.33 0.00 43.43 3.06
1863 2431 3.131223 AGTGGAGATATGAACGGTGTGAG 59.869 47.826 0.00 0.00 0.00 3.51
1871 2439 7.365840 AGAAAAACGAAGTGGAGATATGAAC 57.634 36.000 0.00 0.00 45.00 3.18
1898 2466 5.694910 CGAAACTCTTACAAGAACTAAGGCA 59.305 40.000 0.00 0.00 34.03 4.75
1899 2467 5.695363 ACGAAACTCTTACAAGAACTAAGGC 59.305 40.000 0.00 0.00 34.03 4.35
1900 2468 6.921857 TGACGAAACTCTTACAAGAACTAAGG 59.078 38.462 0.00 0.00 34.03 2.69
1957 2525 6.830912 TCATGTGCTGCTATATTTACCTTCT 58.169 36.000 0.00 0.00 0.00 2.85
1966 2534 6.127225 ACGGATCTATTCATGTGCTGCTATAT 60.127 38.462 0.00 0.00 0.00 0.86
1967 2535 5.185828 ACGGATCTATTCATGTGCTGCTATA 59.814 40.000 0.00 0.00 0.00 1.31
1981 2550 3.126514 CGCGGTGACTATACGGATCTATT 59.873 47.826 0.00 0.00 0.00 1.73
1994 2563 4.664677 GTGGCTCACGCGGTGACT 62.665 66.667 12.47 0.00 37.67 3.41
1995 2564 4.961511 TGTGGCTCACGCGGTGAC 62.962 66.667 12.47 2.03 37.67 3.67
1996 2565 4.002506 ATGTGGCTCACGCGGTGA 62.003 61.111 12.47 11.08 40.50 4.02
1997 2566 3.792047 CATGTGGCTCACGCGGTG 61.792 66.667 12.47 6.71 37.14 4.94
2017 2587 4.804868 AATTACAAGCCATCAACATGCA 57.195 36.364 0.00 0.00 0.00 3.96
2024 2594 4.563168 CCCAAGCAAAATTACAAGCCATCA 60.563 41.667 0.00 0.00 0.00 3.07
2083 2653 3.493524 GGAATGGACAAGTAGAGGCTAGC 60.494 52.174 6.04 6.04 0.00 3.42
2086 2656 1.482593 CGGAATGGACAAGTAGAGGCT 59.517 52.381 0.00 0.00 0.00 4.58
2087 2657 1.941325 CGGAATGGACAAGTAGAGGC 58.059 55.000 0.00 0.00 0.00 4.70
2096 2666 0.107214 GGAAGATGGCGGAATGGACA 60.107 55.000 0.00 0.00 0.00 4.02
2097 2667 0.107214 TGGAAGATGGCGGAATGGAC 60.107 55.000 0.00 0.00 0.00 4.02
2103 2673 2.028125 GATCGGTGGAAGATGGCGGA 62.028 60.000 0.00 0.00 0.00 5.54
2106 2676 0.876342 GTCGATCGGTGGAAGATGGC 60.876 60.000 16.41 0.00 0.00 4.40
2121 2691 7.907045 GTCTTATAAACGTCTACTTGATGTCGA 59.093 37.037 0.00 0.00 43.56 4.20
2122 2692 7.695201 TGTCTTATAAACGTCTACTTGATGTCG 59.305 37.037 0.00 0.00 43.56 4.35
2123 2693 8.906636 TGTCTTATAAACGTCTACTTGATGTC 57.093 34.615 0.00 0.00 43.56 3.06
2124 2694 9.302345 CATGTCTTATAAACGTCTACTTGATGT 57.698 33.333 0.00 0.00 46.06 3.06
2187 2757 9.755804 GAGAATATGTGATCTGTAGACAATTGA 57.244 33.333 13.59 0.00 0.00 2.57
2200 2770 3.868077 GCGCCATAGGAGAATATGTGATC 59.132 47.826 0.00 0.00 32.27 2.92
2206 2776 0.537188 CGGGCGCCATAGGAGAATAT 59.463 55.000 30.85 0.00 0.00 1.28
2211 2781 4.301027 GTCCGGGCGCCATAGGAG 62.301 72.222 29.83 14.10 32.82 3.69
2213 2783 4.609018 CTGTCCGGGCGCCATAGG 62.609 72.222 30.85 26.67 0.00 2.57
2225 2795 0.811616 CTATCCACGGCTTGCTGTCC 60.812 60.000 3.85 0.00 0.00 4.02
2226 2796 0.811616 CCTATCCACGGCTTGCTGTC 60.812 60.000 3.85 0.00 0.00 3.51
2227 2797 1.221840 CCTATCCACGGCTTGCTGT 59.778 57.895 0.63 0.63 0.00 4.40
2228 2798 1.524621 CCCTATCCACGGCTTGCTG 60.525 63.158 0.00 0.00 0.00 4.41
2229 2799 2.911143 CCCTATCCACGGCTTGCT 59.089 61.111 0.00 0.00 0.00 3.91
2230 2800 2.902343 GCCCTATCCACGGCTTGC 60.902 66.667 0.00 0.00 42.21 4.01
2234 2804 3.866582 AGCAGCCCTATCCACGGC 61.867 66.667 0.00 0.00 46.09 5.68
2235 2805 2.109799 CAGCAGCCCTATCCACGG 59.890 66.667 0.00 0.00 0.00 4.94
2236 2806 2.590007 GCAGCAGCCCTATCCACG 60.590 66.667 0.00 0.00 33.58 4.94
2237 2807 2.590007 CGCAGCAGCCCTATCCAC 60.590 66.667 0.00 0.00 37.52 4.02
2238 2808 3.865383 CCGCAGCAGCCCTATCCA 61.865 66.667 0.00 0.00 37.52 3.41
2239 2809 4.632974 CCCGCAGCAGCCCTATCC 62.633 72.222 0.00 0.00 37.52 2.59
2240 2810 4.632974 CCCCGCAGCAGCCCTATC 62.633 72.222 0.00 0.00 37.52 2.08
2267 2837 2.260434 CTGCTTGGGTGCACATGC 59.740 61.111 20.43 16.08 40.67 4.06
2268 2838 0.892358 AGACTGCTTGGGTGCACATG 60.892 55.000 20.43 6.23 38.12 3.21
2269 2839 0.178981 AAGACTGCTTGGGTGCACAT 60.179 50.000 20.43 0.00 38.12 3.21
2270 2840 0.472044 TAAGACTGCTTGGGTGCACA 59.528 50.000 20.43 0.00 38.12 4.57
2271 2841 1.470098 CATAAGACTGCTTGGGTGCAC 59.530 52.381 8.80 8.80 38.12 4.57
2272 2842 1.825090 CATAAGACTGCTTGGGTGCA 58.175 50.000 0.00 0.00 41.05 4.57
2273 2843 0.453390 GCATAAGACTGCTTGGGTGC 59.547 55.000 0.00 0.00 39.12 5.01
2274 2844 1.741706 CTGCATAAGACTGCTTGGGTG 59.258 52.381 0.00 0.00 42.75 4.61
2275 2845 1.630369 TCTGCATAAGACTGCTTGGGT 59.370 47.619 0.00 0.00 42.75 4.51
2276 2846 2.286872 CTCTGCATAAGACTGCTTGGG 58.713 52.381 0.00 0.00 42.75 4.12
2277 2847 2.286872 CCTCTGCATAAGACTGCTTGG 58.713 52.381 0.00 0.00 42.75 3.61
2278 2848 1.669779 GCCTCTGCATAAGACTGCTTG 59.330 52.381 0.00 0.00 42.75 4.01
2279 2849 1.558756 AGCCTCTGCATAAGACTGCTT 59.441 47.619 0.00 0.00 42.75 3.91
2280 2850 1.138661 GAGCCTCTGCATAAGACTGCT 59.861 52.381 0.00 0.00 42.75 4.24
2281 2851 1.580815 GAGCCTCTGCATAAGACTGC 58.419 55.000 0.00 0.00 42.62 4.40
2282 2852 1.761784 AGGAGCCTCTGCATAAGACTG 59.238 52.381 0.00 0.00 41.13 3.51
2283 2853 1.761784 CAGGAGCCTCTGCATAAGACT 59.238 52.381 0.00 0.00 41.13 3.24
2284 2854 2.237393 CAGGAGCCTCTGCATAAGAC 57.763 55.000 0.00 0.00 41.13 3.01
2292 2862 2.104451 ACATGATTAGCAGGAGCCTCTG 59.896 50.000 0.00 0.02 43.56 3.35
2293 2863 2.104451 CACATGATTAGCAGGAGCCTCT 59.896 50.000 0.00 0.00 43.56 3.69
2294 2864 2.492012 CACATGATTAGCAGGAGCCTC 58.508 52.381 0.00 0.00 43.56 4.70
2295 2865 1.476471 GCACATGATTAGCAGGAGCCT 60.476 52.381 0.00 0.00 43.56 4.58
2296 2866 0.950116 GCACATGATTAGCAGGAGCC 59.050 55.000 0.00 0.00 43.56 4.70
2297 2867 1.332997 GTGCACATGATTAGCAGGAGC 59.667 52.381 13.17 0.00 43.60 4.70
2298 2868 1.596260 CGTGCACATGATTAGCAGGAG 59.404 52.381 18.64 0.00 44.34 3.69
2299 2869 1.655484 CGTGCACATGATTAGCAGGA 58.345 50.000 18.64 0.00 44.34 3.86
2300 2870 0.028505 GCGTGCACATGATTAGCAGG 59.971 55.000 18.64 10.58 44.38 4.85
2301 2871 0.028505 GGCGTGCACATGATTAGCAG 59.971 55.000 18.64 0.00 39.21 4.24
2302 2872 0.392863 AGGCGTGCACATGATTAGCA 60.393 50.000 18.64 0.91 35.63 3.49
2303 2873 0.305922 GAGGCGTGCACATGATTAGC 59.694 55.000 18.64 9.86 0.00 3.09
2304 2874 1.328680 GTGAGGCGTGCACATGATTAG 59.671 52.381 18.64 0.00 36.31 1.73
2305 2875 1.368641 GTGAGGCGTGCACATGATTA 58.631 50.000 18.64 0.00 36.31 1.75
2306 2876 1.308069 GGTGAGGCGTGCACATGATT 61.308 55.000 18.64 0.00 37.99 2.57
2307 2877 1.746615 GGTGAGGCGTGCACATGAT 60.747 57.895 18.64 0.00 37.99 2.45
2308 2878 2.358615 GGTGAGGCGTGCACATGA 60.359 61.111 18.64 0.00 37.99 3.07
2309 2879 2.359107 AGGTGAGGCGTGCACATG 60.359 61.111 18.64 2.05 37.99 3.21
2310 2880 2.359107 CAGGTGAGGCGTGCACAT 60.359 61.111 18.64 1.16 37.99 3.21
2311 2881 3.860605 ACAGGTGAGGCGTGCACA 61.861 61.111 18.64 0.00 37.99 4.57
2312 2882 3.349006 CACAGGTGAGGCGTGCAC 61.349 66.667 6.82 6.82 36.51 4.57
2315 2885 3.349006 GTGCACAGGTGAGGCGTG 61.349 66.667 13.17 0.00 38.79 5.34
2316 2886 4.626081 GGTGCACAGGTGAGGCGT 62.626 66.667 20.43 0.00 0.00 5.68
2317 2887 3.907260 ATGGTGCACAGGTGAGGCG 62.907 63.158 20.43 0.00 0.00 5.52
2318 2888 2.034687 ATGGTGCACAGGTGAGGC 59.965 61.111 20.43 0.00 0.00 4.70
2319 2889 2.338015 GCATGGTGCACAGGTGAGG 61.338 63.158 20.43 1.45 44.26 3.86
2320 2890 3.271014 GCATGGTGCACAGGTGAG 58.729 61.111 20.43 2.96 44.26 3.51
2333 2903 4.802051 CCCACCTCCCACGGCATG 62.802 72.222 0.00 0.00 0.00 4.06
2337 2907 3.396570 GTACCCCACCTCCCACGG 61.397 72.222 0.00 0.00 0.00 4.94
2338 2908 2.284405 AGTACCCCACCTCCCACG 60.284 66.667 0.00 0.00 0.00 4.94
2339 2909 2.967946 GCAGTACCCCACCTCCCAC 61.968 68.421 0.00 0.00 0.00 4.61
2340 2910 2.609610 GCAGTACCCCACCTCCCA 60.610 66.667 0.00 0.00 0.00 4.37
2341 2911 2.001269 ATGCAGTACCCCACCTCCC 61.001 63.158 0.00 0.00 0.00 4.30
2342 2912 1.224592 CATGCAGTACCCCACCTCC 59.775 63.158 0.00 0.00 0.00 4.30
2343 2913 1.452108 GCATGCAGTACCCCACCTC 60.452 63.158 14.21 0.00 0.00 3.85
2344 2914 1.925455 AGCATGCAGTACCCCACCT 60.925 57.895 21.98 0.00 0.00 4.00
2345 2915 1.750399 CAGCATGCAGTACCCCACC 60.750 63.158 21.98 0.00 0.00 4.61
2346 2916 1.002134 ACAGCATGCAGTACCCCAC 60.002 57.895 21.98 0.00 42.53 4.61
2347 2917 1.002257 CACAGCATGCAGTACCCCA 60.002 57.895 21.98 0.00 42.53 4.96
2348 2918 3.909662 CACAGCATGCAGTACCCC 58.090 61.111 21.98 0.00 42.53 4.95
2375 2945 4.400961 AAGCACCGAGGCAGGAGC 62.401 66.667 12.07 12.07 46.17 4.70
2376 2946 2.435586 CAAGCACCGAGGCAGGAG 60.436 66.667 6.03 0.00 35.83 3.69
2377 2947 3.241530 ACAAGCACCGAGGCAGGA 61.242 61.111 6.03 0.00 35.83 3.86
2378 2948 3.052082 CACAAGCACCGAGGCAGG 61.052 66.667 1.23 0.00 35.83 4.85
2379 2949 3.730761 GCACAAGCACCGAGGCAG 61.731 66.667 1.23 0.00 41.58 4.85
2421 2991 4.063967 TAGCCTGCACGGGTGACG 62.064 66.667 14.66 0.00 44.90 4.35
2422 2992 2.434359 GTAGCCTGCACGGGTGAC 60.434 66.667 14.66 7.34 44.90 3.67
2423 2993 2.920384 TGTAGCCTGCACGGGTGA 60.920 61.111 14.66 1.97 44.90 4.02
2424 2994 2.434884 CTGTAGCCTGCACGGGTG 60.435 66.667 14.66 0.00 44.90 4.61
2426 2996 4.087892 AGCTGTAGCCTGCACGGG 62.088 66.667 0.00 0.00 43.38 5.28
2427 2997 2.816958 CAGCTGTAGCCTGCACGG 60.817 66.667 5.25 0.00 43.38 4.94
2428 2998 3.494336 GCAGCTGTAGCCTGCACG 61.494 66.667 16.64 0.00 41.46 5.34
2429 2999 2.046507 AGCAGCTGTAGCCTGCAC 60.047 61.111 16.64 0.00 43.00 4.57
2430 3000 2.046604 CAGCAGCTGTAGCCTGCA 60.047 61.111 16.64 0.00 43.00 4.41
2431 3001 3.507009 GCAGCAGCTGTAGCCTGC 61.507 66.667 23.60 22.65 44.53 4.85
2441 3011 1.717937 CATACACCGAAGCAGCAGC 59.282 57.895 0.00 0.00 42.56 5.25
2442 3012 1.717937 GCATACACCGAAGCAGCAG 59.282 57.895 0.00 0.00 0.00 4.24
2443 3013 2.100031 CGCATACACCGAAGCAGCA 61.100 57.895 0.00 0.00 0.00 4.41
2444 3014 2.703409 CGCATACACCGAAGCAGC 59.297 61.111 0.00 0.00 0.00 5.25
2445 3015 1.634757 TTGCGCATACACCGAAGCAG 61.635 55.000 12.75 0.00 35.95 4.24
2446 3016 1.024046 ATTGCGCATACACCGAAGCA 61.024 50.000 12.75 0.00 0.00 3.91
2447 3017 0.589729 CATTGCGCATACACCGAAGC 60.590 55.000 12.75 0.00 0.00 3.86
2448 3018 0.726827 ACATTGCGCATACACCGAAG 59.273 50.000 12.75 0.00 0.00 3.79
2449 3019 1.129624 GAACATTGCGCATACACCGAA 59.870 47.619 12.75 0.00 0.00 4.30
2450 3020 0.724549 GAACATTGCGCATACACCGA 59.275 50.000 12.75 0.00 0.00 4.69
2451 3021 0.445829 TGAACATTGCGCATACACCG 59.554 50.000 12.75 0.00 0.00 4.94
2452 3022 2.250188 GTTGAACATTGCGCATACACC 58.750 47.619 12.75 1.36 0.00 4.16
2453 3023 1.904412 CGTTGAACATTGCGCATACAC 59.096 47.619 12.75 2.89 0.00 2.90
2454 3024 1.801178 TCGTTGAACATTGCGCATACA 59.199 42.857 12.75 4.61 0.00 2.29
2455 3025 2.166007 GTCGTTGAACATTGCGCATAC 58.834 47.619 12.75 1.71 0.00 2.39
2456 3026 1.201866 CGTCGTTGAACATTGCGCATA 60.202 47.619 12.75 2.21 0.00 3.14
2457 3027 0.452618 CGTCGTTGAACATTGCGCAT 60.453 50.000 12.75 0.00 0.00 4.73
2458 3028 1.083080 CGTCGTTGAACATTGCGCA 60.083 52.632 5.66 5.66 0.00 6.09
2459 3029 2.417553 GCGTCGTTGAACATTGCGC 61.418 57.895 0.00 0.00 36.75 6.09
2460 3030 1.792057 GGCGTCGTTGAACATTGCG 60.792 57.895 0.00 0.00 0.00 4.85
2461 3031 0.109781 ATGGCGTCGTTGAACATTGC 60.110 50.000 0.00 0.00 0.00 3.56
2462 3032 2.158645 TGTATGGCGTCGTTGAACATTG 59.841 45.455 0.00 0.00 0.00 2.82
2463 3033 2.418692 TGTATGGCGTCGTTGAACATT 58.581 42.857 0.00 0.00 0.00 2.71
2464 3034 2.087501 TGTATGGCGTCGTTGAACAT 57.912 45.000 0.00 0.00 0.00 2.71
2465 3035 1.996898 GATGTATGGCGTCGTTGAACA 59.003 47.619 0.00 0.00 0.00 3.18
2466 3036 1.326548 GGATGTATGGCGTCGTTGAAC 59.673 52.381 0.00 0.00 33.98 3.18
2467 3037 1.066787 TGGATGTATGGCGTCGTTGAA 60.067 47.619 0.00 0.00 33.98 2.69
2468 3038 0.533032 TGGATGTATGGCGTCGTTGA 59.467 50.000 0.00 0.00 33.98 3.18
2469 3039 0.930310 CTGGATGTATGGCGTCGTTG 59.070 55.000 0.00 0.00 33.98 4.10
2470 3040 0.821517 TCTGGATGTATGGCGTCGTT 59.178 50.000 0.00 0.00 33.98 3.85
2471 3041 0.102481 GTCTGGATGTATGGCGTCGT 59.898 55.000 0.00 0.00 33.98 4.34
2472 3042 0.385751 AGTCTGGATGTATGGCGTCG 59.614 55.000 0.00 0.00 33.98 5.12
2473 3043 2.101582 AGAAGTCTGGATGTATGGCGTC 59.898 50.000 0.00 0.00 0.00 5.19
2474 3044 2.111384 AGAAGTCTGGATGTATGGCGT 58.889 47.619 0.00 0.00 0.00 5.68
2475 3045 2.898729 AGAAGTCTGGATGTATGGCG 57.101 50.000 0.00 0.00 0.00 5.69
2476 3046 4.125703 CTGAAGAAGTCTGGATGTATGGC 58.874 47.826 0.00 0.00 0.00 4.40
2477 3047 4.125703 GCTGAAGAAGTCTGGATGTATGG 58.874 47.826 0.00 0.00 0.00 2.74
2478 3048 5.021033 AGCTGAAGAAGTCTGGATGTATG 57.979 43.478 0.00 0.00 0.00 2.39
2479 3049 4.713814 TGAGCTGAAGAAGTCTGGATGTAT 59.286 41.667 0.00 0.00 0.00 2.29
2480 3050 4.089361 TGAGCTGAAGAAGTCTGGATGTA 58.911 43.478 0.00 0.00 0.00 2.29
2481 3051 2.902486 TGAGCTGAAGAAGTCTGGATGT 59.098 45.455 0.00 0.00 0.00 3.06
2482 3052 3.606595 TGAGCTGAAGAAGTCTGGATG 57.393 47.619 0.00 0.00 0.00 3.51
2483 3053 3.682155 GCATGAGCTGAAGAAGTCTGGAT 60.682 47.826 0.00 0.00 37.91 3.41
2484 3054 2.354503 GCATGAGCTGAAGAAGTCTGGA 60.355 50.000 0.00 0.00 37.91 3.86
2485 3055 2.008329 GCATGAGCTGAAGAAGTCTGG 58.992 52.381 0.00 0.00 37.91 3.86
2498 3068 3.869272 CGCAACCGGAGCATGAGC 61.869 66.667 9.46 0.00 42.56 4.26
2520 3090 2.692368 CAGCTAGGCCAAGGGGGA 60.692 66.667 5.01 0.00 40.01 4.81
2521 3091 4.512914 GCAGCTAGGCCAAGGGGG 62.513 72.222 5.01 0.00 40.85 5.40
2522 3092 4.864334 CGCAGCTAGGCCAAGGGG 62.864 72.222 5.01 0.00 37.18 4.79
2523 3093 4.864334 CCGCAGCTAGGCCAAGGG 62.864 72.222 5.01 0.00 0.00 3.95
2524 3094 3.112205 ATCCGCAGCTAGGCCAAGG 62.112 63.158 5.01 0.00 0.00 3.61
2525 3095 1.596477 GATCCGCAGCTAGGCCAAG 60.596 63.158 5.01 0.00 0.00 3.61
2526 3096 2.505982 GATCCGCAGCTAGGCCAA 59.494 61.111 5.01 0.00 0.00 4.52
2527 3097 3.916544 CGATCCGCAGCTAGGCCA 61.917 66.667 5.01 0.00 0.00 5.36
2528 3098 3.850095 GACGATCCGCAGCTAGGCC 62.850 68.421 0.00 0.00 0.00 5.19
2529 3099 2.355244 GACGATCCGCAGCTAGGC 60.355 66.667 2.68 0.00 0.00 3.93
2530 3100 2.336809 GGACGATCCGCAGCTAGG 59.663 66.667 1.16 1.16 0.00 3.02
2539 3109 0.312416 CTGATCCACTCGGACGATCC 59.688 60.000 0.00 0.00 46.79 3.36
2540 3110 0.318275 GCTGATCCACTCGGACGATC 60.318 60.000 0.00 0.00 46.79 3.69
2541 3111 1.736586 GCTGATCCACTCGGACGAT 59.263 57.895 0.00 0.00 46.79 3.73
2542 3112 2.415608 GGCTGATCCACTCGGACGA 61.416 63.158 0.00 0.00 46.79 4.20
2543 3113 2.105128 GGCTGATCCACTCGGACG 59.895 66.667 0.00 0.00 46.79 4.79
2544 3114 3.298958 TGGCTGATCCACTCGGAC 58.701 61.111 0.00 0.00 46.79 4.79
2551 3121 1.591703 GAGTGTCGTGGCTGATCCA 59.408 57.895 0.00 0.00 44.18 3.41
2552 3122 1.153549 GGAGTGTCGTGGCTGATCC 60.154 63.158 0.00 0.00 0.00 3.36
2553 3123 0.247736 AAGGAGTGTCGTGGCTGATC 59.752 55.000 0.00 0.00 0.00 2.92
2554 3124 0.036952 CAAGGAGTGTCGTGGCTGAT 60.037 55.000 0.00 0.00 0.00 2.90
2555 3125 1.367471 CAAGGAGTGTCGTGGCTGA 59.633 57.895 0.00 0.00 0.00 4.26
2556 3126 2.320587 GCAAGGAGTGTCGTGGCTG 61.321 63.158 0.00 0.00 29.08 4.85
2557 3127 2.031163 GCAAGGAGTGTCGTGGCT 59.969 61.111 0.00 0.00 29.08 4.75
2558 3128 3.414700 CGCAAGGAGTGTCGTGGC 61.415 66.667 0.00 0.00 0.00 5.01
2570 3140 2.252260 CACTGAAACGGCCGCAAG 59.748 61.111 28.58 19.51 0.00 4.01
2571 3141 3.283684 CCACTGAAACGGCCGCAA 61.284 61.111 28.58 7.33 0.00 4.85
2574 3144 3.047877 GTCCCACTGAAACGGCCG 61.048 66.667 26.86 26.86 0.00 6.13
2575 3145 1.303317 ATGTCCCACTGAAACGGCC 60.303 57.895 0.00 0.00 0.00 6.13
2576 3146 1.875963 CATGTCCCACTGAAACGGC 59.124 57.895 0.00 0.00 0.00 5.68
2577 3147 1.875963 GCATGTCCCACTGAAACGG 59.124 57.895 0.00 0.00 0.00 4.44
2578 3148 1.497278 CGCATGTCCCACTGAAACG 59.503 57.895 0.00 0.00 0.00 3.60
2579 3149 1.875963 CCGCATGTCCCACTGAAAC 59.124 57.895 0.00 0.00 0.00 2.78
2580 3150 1.971167 GCCGCATGTCCCACTGAAA 60.971 57.895 0.00 0.00 0.00 2.69
2581 3151 2.359850 GCCGCATGTCCCACTGAA 60.360 61.111 0.00 0.00 0.00 3.02
2582 3152 4.758251 CGCCGCATGTCCCACTGA 62.758 66.667 0.00 0.00 0.00 3.41
2593 3163 4.838152 GAAGAGGGATGCGCCGCA 62.838 66.667 16.69 16.69 44.86 5.69
2594 3164 4.838152 TGAAGAGGGATGCGCCGC 62.838 66.667 4.18 0.00 37.63 6.53
2595 3165 2.892425 GTGAAGAGGGATGCGCCG 60.892 66.667 4.18 0.00 37.63 6.46
2596 3166 2.514824 GGTGAAGAGGGATGCGCC 60.515 66.667 4.18 0.00 0.00 6.53
2597 3167 2.892425 CGGTGAAGAGGGATGCGC 60.892 66.667 0.00 0.00 0.00 6.09
2598 3168 1.519455 GTCGGTGAAGAGGGATGCG 60.519 63.158 0.00 0.00 0.00 4.73
2599 3169 1.153349 GGTCGGTGAAGAGGGATGC 60.153 63.158 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.