Multiple sequence alignment - TraesCS6A01G040300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G040300 chr6A 100.000 3713 0 0 1 3713 20901702 20905414 0.000000e+00 6857
1 TraesCS6A01G040300 chr6A 80.288 1390 238 25 993 2355 21151187 21149807 0.000000e+00 1016
2 TraesCS6A01G040300 chr6A 83.669 845 107 22 2552 3379 21060841 21061671 0.000000e+00 767
3 TraesCS6A01G040300 chr6D 92.730 2696 159 22 916 3588 20792625 20795306 0.000000e+00 3858
4 TraesCS6A01G040300 chr6D 88.318 428 40 6 1 418 20790834 20791261 4.280000e-139 505
5 TraesCS6A01G040300 chr6D 89.474 114 10 2 786 899 20791612 20791723 3.870000e-30 143
6 TraesCS6A01G040300 chr6B 91.449 1988 130 21 1606 3567 35660980 35659007 0.000000e+00 2693
7 TraesCS6A01G040300 chr6B 88.101 395 30 9 2550 2935 35640162 35639776 1.570000e-123 453
8 TraesCS6A01G040300 chr6B 91.892 74 6 0 1502 1575 35661054 35660981 1.820000e-18 104
9 TraesCS6A01G040300 chr5B 75.381 788 167 22 1019 1788 586530603 586531381 4.560000e-94 355
10 TraesCS6A01G040300 chr5A 74.809 786 175 20 1019 1788 597748323 597747545 2.140000e-87 333
11 TraesCS6A01G040300 chr5D 77.033 492 88 19 1019 1501 478703454 478702979 3.680000e-65 259
12 TraesCS6A01G040300 chr5D 75.210 476 101 16 1913 2381 478702536 478702071 3.760000e-50 209
13 TraesCS6A01G040300 chr1A 74.612 516 112 15 1280 1787 427040794 427040290 3.760000e-50 209
14 TraesCS6A01G040300 chr1D 74.468 517 111 16 1280 1787 329795307 329794803 1.750000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G040300 chr6A 20901702 20905414 3712 False 6857.0 6857 100.0000 1 3713 1 chr6A.!!$F1 3712
1 TraesCS6A01G040300 chr6A 21149807 21151187 1380 True 1016.0 1016 80.2880 993 2355 1 chr6A.!!$R1 1362
2 TraesCS6A01G040300 chr6A 21060841 21061671 830 False 767.0 767 83.6690 2552 3379 1 chr6A.!!$F2 827
3 TraesCS6A01G040300 chr6D 20790834 20795306 4472 False 1502.0 3858 90.1740 1 3588 3 chr6D.!!$F1 3587
4 TraesCS6A01G040300 chr6B 35659007 35661054 2047 True 1398.5 2693 91.6705 1502 3567 2 chr6B.!!$R2 2065
5 TraesCS6A01G040300 chr5B 586530603 586531381 778 False 355.0 355 75.3810 1019 1788 1 chr5B.!!$F1 769
6 TraesCS6A01G040300 chr5A 597747545 597748323 778 True 333.0 333 74.8090 1019 1788 1 chr5A.!!$R1 769
7 TraesCS6A01G040300 chr5D 478702071 478703454 1383 True 234.0 259 76.1215 1019 2381 2 chr5D.!!$R1 1362
8 TraesCS6A01G040300 chr1A 427040290 427040794 504 True 209.0 209 74.6120 1280 1787 1 chr1A.!!$R1 507
9 TraesCS6A01G040300 chr1D 329794803 329795307 504 True 204.0 204 74.4680 1280 1787 1 chr1D.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 1863 0.962489 ACCCACACTCTCTCTCAACG 59.038 55.0 0.00 0.0 0.0 4.10 F
999 1895 0.546598 ATAGGAAAACCCCCTCTGCG 59.453 55.0 0.00 0.0 35.3 5.18 F
2473 3435 0.324614 AGACATCGTGGCCATCAACA 59.675 50.0 9.72 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 3411 0.107508 ATGGCCACGATGTCTTCAGG 60.108 55.000 8.16 0.0 0.0 3.86 R
2511 3473 2.751436 AAATGCATCGCGGCCACT 60.751 55.556 6.13 0.0 0.0 4.00 R
3452 4442 0.039180 TAGACTCGAGGGACCAAGCA 59.961 55.000 18.41 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.906611 TTGTCGTACATGCAATTTATTATGC 57.093 32.000 0.00 0.00 42.86 3.14
52 53 8.715998 CACCATTTACTTAGTATGATGAGATGC 58.284 37.037 14.03 0.00 0.00 3.91
59 60 6.649973 ACTTAGTATGATGAGATGCTTGATGC 59.350 38.462 0.00 0.00 43.25 3.91
64 65 1.089112 TGAGATGCTTGATGCCAACG 58.911 50.000 0.00 0.00 42.00 4.10
65 66 1.089920 GAGATGCTTGATGCCAACGT 58.910 50.000 0.00 0.00 42.00 3.99
70 71 2.009051 TGCTTGATGCCAACGTATCAG 58.991 47.619 0.00 0.00 41.40 2.90
290 301 9.787532 AATGAACGTCAAATTTATATGTGGAAG 57.212 29.630 0.00 0.00 0.00 3.46
294 305 7.758495 ACGTCAAATTTATATGTGGAAGGAAC 58.242 34.615 0.00 0.00 0.00 3.62
382 393 9.490379 AACGATGGGTTATCTTATAATCAAGAC 57.510 33.333 0.00 0.00 37.37 3.01
406 417 7.256399 ACCATGAGTAGGATGGGATATCTTTA 58.744 38.462 2.05 0.00 44.22 1.85
506 517 9.631257 AAATGGGTGAAATTTGAAGAAAAATCT 57.369 25.926 0.00 0.00 0.00 2.40
556 567 6.963049 ATTTTCTTAGTTAGTACCACGCTG 57.037 37.500 0.00 0.00 0.00 5.18
557 568 5.458041 TTTCTTAGTTAGTACCACGCTGT 57.542 39.130 0.00 0.00 0.00 4.40
558 569 6.573664 TTTCTTAGTTAGTACCACGCTGTA 57.426 37.500 0.00 0.00 0.00 2.74
559 570 6.573664 TTCTTAGTTAGTACCACGCTGTAA 57.426 37.500 0.00 0.00 0.00 2.41
560 571 6.764308 TCTTAGTTAGTACCACGCTGTAAT 57.236 37.500 0.00 0.00 0.00 1.89
561 572 6.558009 TCTTAGTTAGTACCACGCTGTAATG 58.442 40.000 0.00 0.00 0.00 1.90
562 573 6.375174 TCTTAGTTAGTACCACGCTGTAATGA 59.625 38.462 0.00 0.00 0.00 2.57
563 574 5.593679 AGTTAGTACCACGCTGTAATGAT 57.406 39.130 0.00 0.00 0.00 2.45
564 575 6.704289 AGTTAGTACCACGCTGTAATGATA 57.296 37.500 0.00 0.00 0.00 2.15
565 576 7.104043 AGTTAGTACCACGCTGTAATGATAA 57.896 36.000 0.00 0.00 0.00 1.75
566 577 7.723324 AGTTAGTACCACGCTGTAATGATAAT 58.277 34.615 0.00 0.00 0.00 1.28
567 578 8.202137 AGTTAGTACCACGCTGTAATGATAATT 58.798 33.333 0.00 0.00 0.00 1.40
568 579 8.823818 GTTAGTACCACGCTGTAATGATAATTT 58.176 33.333 0.00 0.00 0.00 1.82
571 582 9.555727 AGTACCACGCTGTAATGATAATTTATT 57.444 29.630 0.00 0.00 0.00 1.40
716 727 9.793259 TTATCTTCAAATTTCACTCACTTAGGT 57.207 29.630 0.00 0.00 0.00 3.08
717 728 8.697507 ATCTTCAAATTTCACTCACTTAGGTT 57.302 30.769 0.00 0.00 0.00 3.50
718 729 8.519799 TCTTCAAATTTCACTCACTTAGGTTT 57.480 30.769 0.00 0.00 0.00 3.27
719 730 8.966868 TCTTCAAATTTCACTCACTTAGGTTTT 58.033 29.630 0.00 0.00 0.00 2.43
814 825 8.443953 AAACTTTGAAGATATCTCATGCTACC 57.556 34.615 5.51 0.00 0.00 3.18
861 872 9.758021 ATCCCATCATTGCTATTGATTATTGTA 57.242 29.630 0.00 0.00 31.50 2.41
890 901 8.922931 TGATTATATTTCTTCTAGCATTGCCA 57.077 30.769 4.70 0.00 0.00 4.92
891 902 9.524496 TGATTATATTTCTTCTAGCATTGCCAT 57.476 29.630 4.70 0.00 0.00 4.40
956 1850 3.188903 TGGCAATCCCCACCCACA 61.189 61.111 0.00 0.00 0.00 4.17
969 1863 0.962489 ACCCACACTCTCTCTCAACG 59.038 55.000 0.00 0.00 0.00 4.10
981 1875 3.815401 CTCTCTCAACGAAACCAAACCAT 59.185 43.478 0.00 0.00 0.00 3.55
989 1883 5.190992 ACGAAACCAAACCATAGGAAAAC 57.809 39.130 0.00 0.00 0.00 2.43
999 1895 0.546598 ATAGGAAAACCCCCTCTGCG 59.453 55.000 0.00 0.00 35.30 5.18
1005 1901 1.201429 AAACCCCCTCTGCGATGTCT 61.201 55.000 0.00 0.00 0.00 3.41
1014 1910 1.400846 TCTGCGATGTCTAACGAGGAC 59.599 52.381 0.00 0.00 0.00 3.85
1058 1954 2.126071 CACGAACATCTCCGGCGT 60.126 61.111 6.01 0.00 35.33 5.68
1105 2001 1.690985 GCCTACTTCCTCCTGCCCT 60.691 63.158 0.00 0.00 0.00 5.19
1220 2116 1.671901 CCCTCCTCCTCGAAGCTGTC 61.672 65.000 0.00 0.00 0.00 3.51
1306 2208 1.296392 CTCTCAACCACATGGCGGA 59.704 57.895 10.20 0.00 39.32 5.54
1377 2279 0.597637 AGACCAGCACGTTCGTCTTG 60.598 55.000 0.00 0.00 31.58 3.02
1379 2281 2.243957 CCAGCACGTTCGTCTTGCA 61.244 57.895 12.14 0.00 42.63 4.08
1563 2465 5.677852 GCCAAATTATTCCTCGTGGGTAAAC 60.678 44.000 3.23 0.00 36.25 2.01
1576 2478 3.509184 GTGGGTAAACTACTTCCTCGAGT 59.491 47.826 12.31 0.00 0.00 4.18
1578 2480 3.509184 GGGTAAACTACTTCCTCGAGTGT 59.491 47.826 12.31 9.64 0.00 3.55
1589 2491 1.337260 CCTCGAGTGTCCACCAGAAAG 60.337 57.143 12.31 0.00 0.00 2.62
1848 2795 1.460255 CCAGCTTTGGGTCTGGGAA 59.540 57.895 0.51 0.00 44.64 3.97
1911 2867 2.983030 GACAATGGTGTGCCGGCA 60.983 61.111 29.03 29.03 38.41 5.69
1958 2914 2.358737 GGTGCTCGAACCCAGGTG 60.359 66.667 0.00 0.00 33.79 4.00
2020 2982 1.751544 CCTTATGGCAGCAGCAGCA 60.752 57.895 12.41 0.00 45.49 4.41
2021 2983 1.725557 CCTTATGGCAGCAGCAGCAG 61.726 60.000 12.41 0.00 45.49 4.24
2110 3072 3.748083 CTGCTATCCATGGCACTATGTT 58.252 45.455 6.96 0.00 39.44 2.71
2112 3074 5.303259 TGCTATCCATGGCACTATGTTTA 57.697 39.130 6.96 0.00 39.44 2.01
2127 3089 1.235724 GTTTACACCCTTGCGAGCTT 58.764 50.000 0.00 0.00 0.00 3.74
2130 3092 0.970640 TACACCCTTGCGAGCTTGTA 59.029 50.000 2.14 8.23 0.00 2.41
2134 3096 2.456119 CCTTGCGAGCTTGTAGGCG 61.456 63.158 10.27 0.00 37.29 5.52
2286 3248 5.048852 GGCTAGATCCTTTGCATTCATCTTC 60.049 44.000 0.00 0.00 0.00 2.87
2385 3347 2.827322 TGCTAATGCTGCAAGGACAAAT 59.173 40.909 6.36 0.00 36.81 2.32
2386 3348 3.184541 GCTAATGCTGCAAGGACAAATG 58.815 45.455 6.36 0.00 36.81 2.32
2391 3353 2.086869 GCTGCAAGGACAAATGAGCTA 58.913 47.619 0.00 0.00 0.00 3.32
2406 3368 4.902443 TGAGCTAGTTCATCCGAGTAAG 57.098 45.455 5.01 0.00 0.00 2.34
2411 3373 5.652891 AGCTAGTTCATCCGAGTAAGAGAAA 59.347 40.000 0.00 0.00 0.00 2.52
2425 3387 3.910568 AGAGAAAGATGGAAGGAGCTG 57.089 47.619 0.00 0.00 0.00 4.24
2426 3388 3.180507 AGAGAAAGATGGAAGGAGCTGT 58.819 45.455 0.00 0.00 0.00 4.40
2430 3392 4.287067 AGAAAGATGGAAGGAGCTGTTGTA 59.713 41.667 0.00 0.00 0.00 2.41
2437 3399 4.530553 TGGAAGGAGCTGTTGTAGTTGATA 59.469 41.667 0.00 0.00 0.00 2.15
2473 3435 0.324614 AGACATCGTGGCCATCAACA 59.675 50.000 9.72 0.00 0.00 3.33
2481 3443 3.627123 TCGTGGCCATCAACAATAATGAG 59.373 43.478 9.72 0.00 0.00 2.90
2488 3450 4.512944 CCATCAACAATAATGAGTCCCTCG 59.487 45.833 0.00 0.00 32.35 4.63
2511 3473 6.710295 TCGAAGAATCTGAAAAGGATGTTGAA 59.290 34.615 0.00 0.00 0.00 2.69
2527 3489 2.751436 AAGTGGCCGCGATGCATT 60.751 55.556 8.23 0.00 0.00 3.56
2536 3498 1.847999 CCGCGATGCATTTGAAATCAC 59.152 47.619 8.23 0.00 0.00 3.06
2744 3706 1.037030 AGCTCGAGAGGCTGAGAAGG 61.037 60.000 18.75 0.00 36.50 3.46
2794 3756 4.335416 TGAAGAAACAGATTTGGGGCTAG 58.665 43.478 0.00 0.00 0.00 3.42
2795 3757 4.202567 TGAAGAAACAGATTTGGGGCTAGT 60.203 41.667 0.00 0.00 0.00 2.57
2799 3761 4.322057 AACAGATTTGGGGCTAGTTCAT 57.678 40.909 0.00 0.00 0.00 2.57
2819 3781 8.567948 AGTTCATGTTTTCGACTTTGTCATAAT 58.432 29.630 0.00 0.00 32.09 1.28
2820 3782 9.820229 GTTCATGTTTTCGACTTTGTCATAATA 57.180 29.630 0.00 0.00 32.09 0.98
2846 3808 8.655935 ATTTGTTCTTTATTCCAGGAATGTCT 57.344 30.769 23.31 1.51 33.95 3.41
2852 3823 6.886459 TCTTTATTCCAGGAATGTCTTGAAGG 59.114 38.462 23.31 9.80 33.95 3.46
2878 3849 6.648192 AGCAGATAGGATGTTATCATTAGGC 58.352 40.000 0.00 0.00 34.06 3.93
2997 3971 3.450578 GCTCTCTCTGATTTGCTCTGAG 58.549 50.000 0.00 0.00 46.16 3.35
3034 4011 4.820897 ACACTATCTTCACATGCGAAAGA 58.179 39.130 7.29 7.29 0.00 2.52
3090 4067 7.475771 TTTCAATTTGTTGAACTGCAATACC 57.524 32.000 3.29 0.00 40.29 2.73
3139 4126 0.764890 TTAAGCTGGCTGACCTGTGT 59.235 50.000 0.00 0.00 37.23 3.72
3158 4145 6.812160 CCTGTGTAGTACTGTGATTTCTTACC 59.188 42.308 5.39 0.00 0.00 2.85
3176 4163 0.250513 CCACCAGTCCTAAGCTGACC 59.749 60.000 0.00 0.00 36.12 4.02
3191 4178 6.412362 AAGCTGACCGATCTATCTTATGTT 57.588 37.500 0.00 0.00 0.00 2.71
3469 4459 0.179097 GATGCTTGGTCCCTCGAGTC 60.179 60.000 12.31 1.38 0.00 3.36
3501 4491 4.830600 GGGTAAGTTTCATCCAAAACCTGA 59.169 41.667 0.00 0.00 39.46 3.86
3568 4558 0.107703 TTGTCACATCGGATGGGCTC 60.108 55.000 21.19 13.79 32.41 4.70
3579 4569 2.460669 GGATGGGCTCTTTGGTCAAAT 58.539 47.619 0.00 0.00 0.00 2.32
3588 4578 4.081406 CTCTTTGGTCAAATCCATCACCA 58.919 43.478 0.00 0.00 37.33 4.17
3589 4579 4.478203 TCTTTGGTCAAATCCATCACCAA 58.522 39.130 0.00 0.00 45.27 3.67
3590 4580 4.280677 TCTTTGGTCAAATCCATCACCAAC 59.719 41.667 1.83 0.00 46.32 3.77
3591 4581 2.524306 TGGTCAAATCCATCACCAACC 58.476 47.619 0.00 0.00 35.93 3.77
3592 4582 1.824852 GGTCAAATCCATCACCAACCC 59.175 52.381 0.00 0.00 0.00 4.11
3593 4583 1.472480 GTCAAATCCATCACCAACCCG 59.528 52.381 0.00 0.00 0.00 5.28
3594 4584 1.352687 TCAAATCCATCACCAACCCGA 59.647 47.619 0.00 0.00 0.00 5.14
3595 4585 1.472480 CAAATCCATCACCAACCCGAC 59.528 52.381 0.00 0.00 0.00 4.79
3596 4586 0.695924 AATCCATCACCAACCCGACA 59.304 50.000 0.00 0.00 0.00 4.35
3597 4587 0.918983 ATCCATCACCAACCCGACAT 59.081 50.000 0.00 0.00 0.00 3.06
3598 4588 1.574263 TCCATCACCAACCCGACATA 58.426 50.000 0.00 0.00 0.00 2.29
3599 4589 1.909986 TCCATCACCAACCCGACATAA 59.090 47.619 0.00 0.00 0.00 1.90
3600 4590 2.093181 TCCATCACCAACCCGACATAAG 60.093 50.000 0.00 0.00 0.00 1.73
3601 4591 2.355716 CCATCACCAACCCGACATAAGT 60.356 50.000 0.00 0.00 0.00 2.24
3602 4592 2.465860 TCACCAACCCGACATAAGTG 57.534 50.000 0.00 0.00 0.00 3.16
3603 4593 1.695242 TCACCAACCCGACATAAGTGT 59.305 47.619 0.00 0.00 42.49 3.55
3604 4594 2.898612 TCACCAACCCGACATAAGTGTA 59.101 45.455 0.00 0.00 39.09 2.90
3605 4595 2.997986 CACCAACCCGACATAAGTGTAC 59.002 50.000 0.00 0.00 39.09 2.90
3606 4596 2.901839 ACCAACCCGACATAAGTGTACT 59.098 45.455 0.00 0.00 39.09 2.73
3607 4597 3.325716 ACCAACCCGACATAAGTGTACTT 59.674 43.478 2.51 2.51 39.09 2.24
3608 4598 4.202388 ACCAACCCGACATAAGTGTACTTT 60.202 41.667 2.20 0.00 39.09 2.66
3609 4599 4.758165 CCAACCCGACATAAGTGTACTTTT 59.242 41.667 2.20 0.00 39.09 2.27
3610 4600 5.106830 CCAACCCGACATAAGTGTACTTTTC 60.107 44.000 2.20 0.00 39.09 2.29
3611 4601 5.479124 ACCCGACATAAGTGTACTTTTCT 57.521 39.130 2.20 0.00 39.09 2.52
3612 4602 5.476614 ACCCGACATAAGTGTACTTTTCTC 58.523 41.667 2.20 0.00 39.09 2.87
3613 4603 5.245526 ACCCGACATAAGTGTACTTTTCTCT 59.754 40.000 2.20 0.00 39.09 3.10
3614 4604 6.164176 CCCGACATAAGTGTACTTTTCTCTT 58.836 40.000 2.20 0.00 39.09 2.85
3615 4605 6.090898 CCCGACATAAGTGTACTTTTCTCTTG 59.909 42.308 2.20 0.00 39.09 3.02
3616 4606 6.866770 CCGACATAAGTGTACTTTTCTCTTGA 59.133 38.462 2.20 0.00 39.09 3.02
3617 4607 7.148787 CCGACATAAGTGTACTTTTCTCTTGAC 60.149 40.741 2.20 0.00 39.09 3.18
3618 4608 7.595502 CGACATAAGTGTACTTTTCTCTTGACT 59.404 37.037 2.20 0.00 39.09 3.41
3619 4609 9.262358 GACATAAGTGTACTTTTCTCTTGACTT 57.738 33.333 2.20 0.00 39.09 3.01
3620 4610 9.046296 ACATAAGTGTACTTTTCTCTTGACTTG 57.954 33.333 2.20 0.00 36.63 3.16
3621 4611 9.261180 CATAAGTGTACTTTTCTCTTGACTTGA 57.739 33.333 2.20 0.00 37.40 3.02
3622 4612 7.778470 AAGTGTACTTTTCTCTTGACTTGAG 57.222 36.000 0.00 0.00 30.82 3.02
3623 4613 6.284459 AGTGTACTTTTCTCTTGACTTGAGG 58.716 40.000 0.00 0.00 32.78 3.86
3624 4614 5.467063 GTGTACTTTTCTCTTGACTTGAGGG 59.533 44.000 0.00 0.00 32.78 4.30
3625 4615 5.365605 TGTACTTTTCTCTTGACTTGAGGGA 59.634 40.000 0.00 0.00 32.78 4.20
3626 4616 4.709250 ACTTTTCTCTTGACTTGAGGGAC 58.291 43.478 0.00 0.00 32.78 4.46
3649 4639 2.203153 AGCGCACCGGTGTTCTTT 60.203 55.556 33.92 13.97 35.85 2.52
3650 4640 2.251371 GCGCACCGGTGTTCTTTC 59.749 61.111 33.92 16.25 0.00 2.62
3651 4641 2.943653 CGCACCGGTGTTCTTTCC 59.056 61.111 33.92 15.52 0.00 3.13
3652 4642 2.613506 CGCACCGGTGTTCTTTCCC 61.614 63.158 33.92 14.79 0.00 3.97
3653 4643 2.265904 GCACCGGTGTTCTTTCCCC 61.266 63.158 33.92 11.69 0.00 4.81
3654 4644 1.454539 CACCGGTGTTCTTTCCCCT 59.545 57.895 26.95 0.00 0.00 4.79
3655 4645 0.179001 CACCGGTGTTCTTTCCCCTT 60.179 55.000 26.95 0.00 0.00 3.95
3656 4646 0.179001 ACCGGTGTTCTTTCCCCTTG 60.179 55.000 6.12 0.00 0.00 3.61
3657 4647 0.109723 CCGGTGTTCTTTCCCCTTGA 59.890 55.000 0.00 0.00 0.00 3.02
3658 4648 1.235724 CGGTGTTCTTTCCCCTTGAC 58.764 55.000 0.00 0.00 0.00 3.18
3659 4649 1.202770 CGGTGTTCTTTCCCCTTGACT 60.203 52.381 0.00 0.00 0.00 3.41
3660 4650 2.748465 CGGTGTTCTTTCCCCTTGACTT 60.748 50.000 0.00 0.00 0.00 3.01
3661 4651 2.623416 GGTGTTCTTTCCCCTTGACTTG 59.377 50.000 0.00 0.00 0.00 3.16
3662 4652 3.551846 GTGTTCTTTCCCCTTGACTTGA 58.448 45.455 0.00 0.00 0.00 3.02
3663 4653 3.565902 GTGTTCTTTCCCCTTGACTTGAG 59.434 47.826 0.00 0.00 0.00 3.02
3664 4654 3.149981 GTTCTTTCCCCTTGACTTGAGG 58.850 50.000 0.00 0.00 0.00 3.86
3671 4661 2.656947 CCTTGACTTGAGGGACCAAA 57.343 50.000 0.00 0.00 0.00 3.28
3672 4662 3.160679 CCTTGACTTGAGGGACCAAAT 57.839 47.619 0.00 0.00 0.00 2.32
3673 4663 2.821969 CCTTGACTTGAGGGACCAAATG 59.178 50.000 0.00 0.00 0.00 2.32
3674 4664 3.490348 CTTGACTTGAGGGACCAAATGT 58.510 45.455 0.00 0.00 0.00 2.71
3675 4665 3.140325 TGACTTGAGGGACCAAATGTC 57.860 47.619 0.00 0.00 43.67 3.06
3676 4666 2.441375 TGACTTGAGGGACCAAATGTCA 59.559 45.455 0.00 0.00 46.38 3.58
3681 4671 3.448469 GGGACCAAATGTCACCCAA 57.552 52.632 0.00 0.00 46.38 4.12
3682 4672 1.710816 GGGACCAAATGTCACCCAAA 58.289 50.000 0.00 0.00 46.38 3.28
3683 4673 2.043227 GGGACCAAATGTCACCCAAAA 58.957 47.619 0.00 0.00 46.38 2.44
3684 4674 2.436173 GGGACCAAATGTCACCCAAAAA 59.564 45.455 0.00 0.00 46.38 1.94
3700 4690 2.702270 AAAAATCTTGAGGGGCCACT 57.298 45.000 7.63 7.63 0.00 4.00
3701 4691 2.702270 AAAATCTTGAGGGGCCACTT 57.298 45.000 10.15 0.00 0.00 3.16
3702 4692 2.702270 AAATCTTGAGGGGCCACTTT 57.298 45.000 10.15 0.00 0.00 2.66
3703 4693 2.702270 AATCTTGAGGGGCCACTTTT 57.298 45.000 10.15 0.00 0.00 2.27
3704 4694 3.825908 AATCTTGAGGGGCCACTTTTA 57.174 42.857 10.15 0.00 0.00 1.52
3705 4695 4.337264 AATCTTGAGGGGCCACTTTTAT 57.663 40.909 10.15 0.00 0.00 1.40
3706 4696 3.825908 TCTTGAGGGGCCACTTTTATT 57.174 42.857 10.15 0.00 0.00 1.40
3707 4697 3.697166 TCTTGAGGGGCCACTTTTATTC 58.303 45.455 10.15 0.00 0.00 1.75
3708 4698 3.333680 TCTTGAGGGGCCACTTTTATTCT 59.666 43.478 10.15 0.00 0.00 2.40
3709 4699 3.825908 TGAGGGGCCACTTTTATTCTT 57.174 42.857 10.15 0.00 0.00 2.52
3710 4700 4.126520 TGAGGGGCCACTTTTATTCTTT 57.873 40.909 10.15 0.00 0.00 2.52
3711 4701 4.488770 TGAGGGGCCACTTTTATTCTTTT 58.511 39.130 10.15 0.00 0.00 2.27
3712 4702 4.283212 TGAGGGGCCACTTTTATTCTTTTG 59.717 41.667 10.15 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.710900 CTCATCATACTAAGTAAATGGTGCATA 57.289 33.333 0.00 0.00 32.82 3.14
26 27 8.715998 GCATCTCATCATACTAAGTAAATGGTG 58.284 37.037 0.00 0.00 33.84 4.17
35 36 7.062906 GCATCAAGCATCTCATCATACTAAG 57.937 40.000 0.00 0.00 44.79 2.18
52 53 5.292765 AGATACTGATACGTTGGCATCAAG 58.707 41.667 0.00 0.00 32.92 3.02
59 60 5.902681 TCAAAGGAGATACTGATACGTTGG 58.097 41.667 0.00 0.00 0.00 3.77
64 65 7.976135 ATTGCATCAAAGGAGATACTGATAC 57.024 36.000 0.00 0.00 0.00 2.24
65 66 8.316946 CCTATTGCATCAAAGGAGATACTGATA 58.683 37.037 0.00 0.00 0.00 2.15
70 71 6.203723 GTCACCTATTGCATCAAAGGAGATAC 59.796 42.308 10.19 1.55 31.07 2.24
253 263 9.842444 AAATTTGACGTTCATTTTAAACAATCG 57.158 25.926 0.00 0.00 0.00 3.34
339 350 7.041372 ACCCATCGTTGCTATTGATTATTGTAC 60.041 37.037 0.00 0.00 0.00 2.90
358 369 8.094548 TGGTCTTGATTATAAGATAACCCATCG 58.905 37.037 0.00 0.00 38.79 3.84
382 393 6.633325 AAAGATATCCCATCCTACTCATGG 57.367 41.667 0.00 0.00 40.67 3.66
480 491 9.631257 AGATTTTTCTTCAAATTTCACCCATTT 57.369 25.926 0.00 0.00 0.00 2.32
530 541 9.740239 CAGCGTGGTACTAACTAAGAAAATATA 57.260 33.333 0.00 0.00 0.00 0.86
531 542 8.255905 ACAGCGTGGTACTAACTAAGAAAATAT 58.744 33.333 0.00 0.00 0.00 1.28
532 543 7.605449 ACAGCGTGGTACTAACTAAGAAAATA 58.395 34.615 0.00 0.00 0.00 1.40
533 544 6.461640 ACAGCGTGGTACTAACTAAGAAAAT 58.538 36.000 0.00 0.00 0.00 1.82
534 545 5.846203 ACAGCGTGGTACTAACTAAGAAAA 58.154 37.500 0.00 0.00 0.00 2.29
535 546 5.458041 ACAGCGTGGTACTAACTAAGAAA 57.542 39.130 0.00 0.00 0.00 2.52
536 547 6.573664 TTACAGCGTGGTACTAACTAAGAA 57.426 37.500 0.00 0.00 0.00 2.52
537 548 6.375174 TCATTACAGCGTGGTACTAACTAAGA 59.625 38.462 0.00 0.00 0.00 2.10
538 549 6.558009 TCATTACAGCGTGGTACTAACTAAG 58.442 40.000 0.00 0.00 0.00 2.18
539 550 6.513806 TCATTACAGCGTGGTACTAACTAA 57.486 37.500 0.00 0.00 0.00 2.24
540 551 6.704289 ATCATTACAGCGTGGTACTAACTA 57.296 37.500 0.00 0.00 0.00 2.24
541 552 5.593679 ATCATTACAGCGTGGTACTAACT 57.406 39.130 0.00 0.00 0.00 2.24
542 553 7.941795 ATTATCATTACAGCGTGGTACTAAC 57.058 36.000 0.00 0.00 0.00 2.34
543 554 8.951787 AAATTATCATTACAGCGTGGTACTAA 57.048 30.769 0.00 0.00 0.00 2.24
545 556 9.555727 AATAAATTATCATTACAGCGTGGTACT 57.444 29.630 0.00 0.00 0.00 2.73
690 701 9.793259 ACCTAAGTGAGTGAAATTTGAAGATAA 57.207 29.630 0.00 0.00 0.00 1.75
691 702 9.793259 AACCTAAGTGAGTGAAATTTGAAGATA 57.207 29.630 0.00 0.00 0.00 1.98
692 703 8.697507 AACCTAAGTGAGTGAAATTTGAAGAT 57.302 30.769 0.00 0.00 0.00 2.40
693 704 8.519799 AAACCTAAGTGAGTGAAATTTGAAGA 57.480 30.769 0.00 0.00 0.00 2.87
774 785 9.391006 TCTTCAAAGTTTAGTCACTTATGTTGT 57.609 29.630 0.00 0.00 35.87 3.32
784 795 9.102757 GCATGAGATATCTTCAAAGTTTAGTCA 57.897 33.333 6.70 0.00 0.00 3.41
805 816 1.839354 TCAAGAGCATGGGTAGCATGA 59.161 47.619 0.00 0.00 32.09 3.07
809 820 6.467677 TCTTATAATCAAGAGCATGGGTAGC 58.532 40.000 0.00 0.00 31.01 3.58
812 823 8.270744 GGATATCTTATAATCAAGAGCATGGGT 58.729 37.037 2.05 0.00 37.93 4.51
814 825 8.270030 TGGGATATCTTATAATCAAGAGCATGG 58.730 37.037 2.05 0.00 37.93 3.66
934 1828 2.438434 GTGGGGATTGCCACGGAG 60.438 66.667 0.00 0.00 42.06 4.63
937 1831 4.358841 TGGGTGGGGATTGCCACG 62.359 66.667 0.00 0.00 42.06 4.94
941 1835 1.678970 GAGTGTGGGTGGGGATTGC 60.679 63.158 0.00 0.00 0.00 3.56
952 1846 3.053455 GTTTCGTTGAGAGAGAGTGTGG 58.947 50.000 0.00 0.00 0.00 4.17
954 1848 2.693591 TGGTTTCGTTGAGAGAGAGTGT 59.306 45.455 0.00 0.00 0.00 3.55
956 1850 4.120589 GTTTGGTTTCGTTGAGAGAGAGT 58.879 43.478 0.00 0.00 0.00 3.24
969 1863 4.262721 GGGGTTTTCCTATGGTTTGGTTTC 60.263 45.833 0.00 0.00 40.46 2.78
981 1875 0.545787 TCGCAGAGGGGGTTTTCCTA 60.546 55.000 0.00 0.00 40.46 2.94
989 1883 0.105039 GTTAGACATCGCAGAGGGGG 59.895 60.000 0.00 0.00 45.68 5.40
999 1895 1.671845 AGCTCGTCCTCGTTAGACATC 59.328 52.381 0.00 0.00 38.33 3.06
1084 1980 3.095347 GCAGGAGGAAGTAGGCCGG 62.095 68.421 0.00 0.00 0.00 6.13
1197 2093 2.683933 TTCGAGGAGGAGGGCCAC 60.684 66.667 6.18 0.00 36.29 5.01
1306 2208 0.456221 AGATCTTCGTCACGCCGAAT 59.544 50.000 0.00 0.00 44.93 3.34
1545 2447 6.351286 GGAAGTAGTTTACCCACGAGGAATAA 60.351 42.308 0.00 0.00 39.89 1.40
1563 2465 1.473278 GGTGGACACTCGAGGAAGTAG 59.527 57.143 18.41 1.76 0.00 2.57
1576 2478 1.142667 TGCATCACTTTCTGGTGGACA 59.857 47.619 0.00 0.00 37.75 4.02
1578 2480 1.271543 CCTGCATCACTTTCTGGTGGA 60.272 52.381 0.00 0.00 37.75 4.02
1611 2513 4.778143 AATCCAGCGGCCGTGTCC 62.778 66.667 28.70 10.05 0.00 4.02
1857 2804 1.592223 CTTCTCCGGGCGAAGTTCT 59.408 57.895 16.79 0.00 34.58 3.01
1860 2807 2.603776 ACCTTCTCCGGGCGAAGT 60.604 61.111 21.72 10.01 36.91 3.01
1911 2867 2.123338 TGCCACTTTGCAGCCCTT 60.123 55.556 0.00 0.00 36.04 3.95
2110 3072 0.107831 ACAAGCTCGCAAGGGTGTAA 59.892 50.000 0.00 0.00 42.80 2.41
2112 3074 0.320771 CTACAAGCTCGCAAGGGTGT 60.321 55.000 0.00 0.00 42.80 4.16
2127 3089 2.971997 GATGCAATCGACGCCTACA 58.028 52.632 6.22 0.00 31.13 2.74
2385 3347 4.524053 TCTTACTCGGATGAACTAGCTCA 58.476 43.478 0.00 0.00 0.00 4.26
2386 3348 4.817464 TCTCTTACTCGGATGAACTAGCTC 59.183 45.833 0.00 0.00 0.00 4.09
2391 3353 6.406400 CCATCTTTCTCTTACTCGGATGAACT 60.406 42.308 0.00 0.00 33.25 3.01
2406 3368 3.625649 ACAGCTCCTTCCATCTTTCTC 57.374 47.619 0.00 0.00 0.00 2.87
2411 3373 3.177228 ACTACAACAGCTCCTTCCATCT 58.823 45.455 0.00 0.00 0.00 2.90
2437 3399 3.489355 TGTCTTCAGGTGTTGATTGCAT 58.511 40.909 0.00 0.00 35.27 3.96
2449 3411 0.107508 ATGGCCACGATGTCTTCAGG 60.108 55.000 8.16 0.00 0.00 3.86
2481 3443 3.935828 CCTTTTCAGATTCTTCGAGGGAC 59.064 47.826 0.00 0.00 0.00 4.46
2488 3450 7.806960 CACTTCAACATCCTTTTCAGATTCTTC 59.193 37.037 0.00 0.00 0.00 2.87
2511 3473 2.751436 AAATGCATCGCGGCCACT 60.751 55.556 6.13 0.00 0.00 4.00
2527 3489 2.935505 CCGGTTCGGGTGATTTCAA 58.064 52.632 0.00 0.00 44.15 2.69
2768 3730 3.189287 CCCCAAATCTGTTTCTTCAGACG 59.811 47.826 0.00 0.00 45.40 4.18
2794 3756 8.728088 ATTATGACAAAGTCGAAAACATGAAC 57.272 30.769 0.00 0.00 34.95 3.18
2820 3782 9.093458 AGACATTCCTGGAATAAAGAACAAATT 57.907 29.630 20.95 0.00 30.44 1.82
2821 3783 8.655935 AGACATTCCTGGAATAAAGAACAAAT 57.344 30.769 20.95 0.00 30.44 2.32
2822 3784 8.359642 CAAGACATTCCTGGAATAAAGAACAAA 58.640 33.333 20.95 0.00 30.44 2.83
2846 3808 5.441718 AACATCCTATCTGCTTCCTTCAA 57.558 39.130 0.00 0.00 0.00 2.69
2852 3823 7.279758 GCCTAATGATAACATCCTATCTGCTTC 59.720 40.741 0.00 0.00 35.50 3.86
2878 3849 8.877779 CATGTAGAGATAGTTTCTTTTGACCAG 58.122 37.037 0.00 0.00 33.74 4.00
2940 3912 3.217681 TGGGGTTAAGGTGAAGTTCAC 57.782 47.619 25.00 25.00 46.23 3.18
2997 3971 8.023128 TGAAGATAGTGTTTTTCAAGCATAAGC 58.977 33.333 0.00 0.00 42.56 3.09
3006 3980 5.468409 TCGCATGTGAAGATAGTGTTTTTCA 59.532 36.000 6.47 0.00 0.00 2.69
3090 4067 8.377681 ACACACACTAATTAATACGAAATCACG 58.622 33.333 0.00 0.00 39.31 4.35
3139 4126 6.495872 ACTGGTGGTAAGAAATCACAGTACTA 59.504 38.462 0.00 0.00 33.45 1.82
3158 4145 0.108615 CGGTCAGCTTAGGACTGGTG 60.109 60.000 4.01 0.00 37.87 4.17
3191 4178 6.631971 TGTTGCAAAACATGAACTATGAGA 57.368 33.333 0.00 0.00 39.21 3.27
3387 4377 9.758651 GGTAAACTTGAGGAACAAAAACATATT 57.241 29.630 0.00 0.00 38.08 1.28
3388 4378 8.919145 TGGTAAACTTGAGGAACAAAAACATAT 58.081 29.630 0.00 0.00 38.08 1.78
3389 4379 8.294954 TGGTAAACTTGAGGAACAAAAACATA 57.705 30.769 0.00 0.00 38.08 2.29
3390 4380 7.176589 TGGTAAACTTGAGGAACAAAAACAT 57.823 32.000 0.00 0.00 38.08 2.71
3391 4381 6.591750 TGGTAAACTTGAGGAACAAAAACA 57.408 33.333 0.00 0.00 38.08 2.83
3392 4382 7.892778 TTTGGTAAACTTGAGGAACAAAAAC 57.107 32.000 0.00 0.00 38.08 2.43
3397 4387 9.059260 GTATACTTTTGGTAAACTTGAGGAACA 57.941 33.333 0.00 0.00 33.74 3.18
3400 4390 9.059260 GTTGTATACTTTTGGTAAACTTGAGGA 57.941 33.333 4.17 0.00 33.74 3.71
3443 4433 0.541764 GGGACCAAGCATCACCCAAA 60.542 55.000 0.00 0.00 40.20 3.28
3452 4442 0.039180 TAGACTCGAGGGACCAAGCA 59.961 55.000 18.41 0.00 0.00 3.91
3453 4443 0.741915 CTAGACTCGAGGGACCAAGC 59.258 60.000 18.41 0.00 0.00 4.01
3454 4444 2.421751 TCTAGACTCGAGGGACCAAG 57.578 55.000 18.41 5.37 0.00 3.61
3501 4491 0.898326 GGCCGGTTTCCCACTGAAAT 60.898 55.000 1.90 0.00 44.44 2.17
3568 4558 4.870123 TTGGTGATGGATTTGACCAAAG 57.130 40.909 0.00 0.00 43.80 2.77
3579 4569 1.574263 TATGTCGGGTTGGTGATGGA 58.426 50.000 0.00 0.00 0.00 3.41
3588 4578 5.861727 AGAAAAGTACACTTATGTCGGGTT 58.138 37.500 0.00 0.00 40.48 4.11
3589 4579 5.245526 AGAGAAAAGTACACTTATGTCGGGT 59.754 40.000 0.00 0.00 40.48 5.28
3590 4580 5.721232 AGAGAAAAGTACACTTATGTCGGG 58.279 41.667 0.00 0.00 40.48 5.14
3591 4581 6.866770 TCAAGAGAAAAGTACACTTATGTCGG 59.133 38.462 0.00 0.00 40.48 4.79
3592 4582 7.595502 AGTCAAGAGAAAAGTACACTTATGTCG 59.404 37.037 0.00 0.00 40.48 4.35
3593 4583 8.819643 AGTCAAGAGAAAAGTACACTTATGTC 57.180 34.615 0.00 0.00 40.48 3.06
3594 4584 9.046296 CAAGTCAAGAGAAAAGTACACTTATGT 57.954 33.333 0.00 0.00 43.30 2.29
3595 4585 9.261180 TCAAGTCAAGAGAAAAGTACACTTATG 57.739 33.333 0.00 0.00 34.61 1.90
3596 4586 9.482627 CTCAAGTCAAGAGAAAAGTACACTTAT 57.517 33.333 0.00 0.00 33.36 1.73
3597 4587 7.926555 CCTCAAGTCAAGAGAAAAGTACACTTA 59.073 37.037 0.00 0.00 33.36 2.24
3598 4588 6.763610 CCTCAAGTCAAGAGAAAAGTACACTT 59.236 38.462 0.00 0.00 34.87 3.16
3599 4589 6.284459 CCTCAAGTCAAGAGAAAAGTACACT 58.716 40.000 0.00 0.00 35.09 3.55
3600 4590 5.467063 CCCTCAAGTCAAGAGAAAAGTACAC 59.533 44.000 0.00 0.00 35.09 2.90
3601 4591 5.365605 TCCCTCAAGTCAAGAGAAAAGTACA 59.634 40.000 0.00 0.00 35.09 2.90
3602 4592 5.697178 GTCCCTCAAGTCAAGAGAAAAGTAC 59.303 44.000 0.00 0.00 35.09 2.73
3603 4593 5.602978 AGTCCCTCAAGTCAAGAGAAAAGTA 59.397 40.000 0.00 0.00 35.09 2.24
3604 4594 4.410555 AGTCCCTCAAGTCAAGAGAAAAGT 59.589 41.667 0.00 0.00 35.09 2.66
3605 4595 4.967036 AGTCCCTCAAGTCAAGAGAAAAG 58.033 43.478 0.00 0.00 35.09 2.27
3606 4596 4.501571 CGAGTCCCTCAAGTCAAGAGAAAA 60.502 45.833 0.00 0.00 35.09 2.29
3607 4597 3.005897 CGAGTCCCTCAAGTCAAGAGAAA 59.994 47.826 0.00 0.00 35.09 2.52
3608 4598 2.558795 CGAGTCCCTCAAGTCAAGAGAA 59.441 50.000 0.00 0.00 35.09 2.87
3609 4599 2.163509 CGAGTCCCTCAAGTCAAGAGA 58.836 52.381 0.00 0.00 35.09 3.10
3610 4600 1.203523 CCGAGTCCCTCAAGTCAAGAG 59.796 57.143 0.00 0.00 0.00 2.85
3611 4601 1.257743 CCGAGTCCCTCAAGTCAAGA 58.742 55.000 0.00 0.00 0.00 3.02
3612 4602 0.390472 GCCGAGTCCCTCAAGTCAAG 60.390 60.000 0.00 0.00 0.00 3.02
3613 4603 1.118965 TGCCGAGTCCCTCAAGTCAA 61.119 55.000 0.00 0.00 0.00 3.18
3614 4604 1.533033 TGCCGAGTCCCTCAAGTCA 60.533 57.895 0.00 0.00 0.00 3.41
3615 4605 1.216710 CTGCCGAGTCCCTCAAGTC 59.783 63.158 0.00 0.00 0.00 3.01
3616 4606 2.948720 GCTGCCGAGTCCCTCAAGT 61.949 63.158 0.00 0.00 0.00 3.16
3617 4607 2.125350 GCTGCCGAGTCCCTCAAG 60.125 66.667 0.00 0.00 0.00 3.02
3618 4608 4.069232 CGCTGCCGAGTCCCTCAA 62.069 66.667 0.00 0.00 36.29 3.02
3631 4621 2.443957 GAAAGAACACCGGTGCGCTG 62.444 60.000 34.26 11.31 0.00 5.18
3632 4622 2.203153 AAAGAACACCGGTGCGCT 60.203 55.556 34.26 26.68 0.00 5.92
3633 4623 2.251371 GAAAGAACACCGGTGCGC 59.749 61.111 34.26 24.88 0.00 6.09
3634 4624 2.613506 GGGAAAGAACACCGGTGCG 61.614 63.158 34.26 12.93 0.00 5.34
3635 4625 2.265904 GGGGAAAGAACACCGGTGC 61.266 63.158 34.26 19.04 0.00 5.01
3636 4626 0.179001 AAGGGGAAAGAACACCGGTG 60.179 55.000 32.83 32.83 38.55 4.94
3637 4627 0.179001 CAAGGGGAAAGAACACCGGT 60.179 55.000 0.00 0.00 38.55 5.28
3638 4628 0.109723 TCAAGGGGAAAGAACACCGG 59.890 55.000 0.00 0.00 38.55 5.28
3639 4629 1.202770 AGTCAAGGGGAAAGAACACCG 60.203 52.381 0.00 0.00 38.55 4.94
3640 4630 2.623416 CAAGTCAAGGGGAAAGAACACC 59.377 50.000 0.00 0.00 0.00 4.16
3641 4631 3.551846 TCAAGTCAAGGGGAAAGAACAC 58.448 45.455 0.00 0.00 0.00 3.32
3642 4632 3.435026 CCTCAAGTCAAGGGGAAAGAACA 60.435 47.826 0.00 0.00 0.00 3.18
3643 4633 3.149981 CCTCAAGTCAAGGGGAAAGAAC 58.850 50.000 0.00 0.00 0.00 3.01
3644 4634 3.508845 CCTCAAGTCAAGGGGAAAGAA 57.491 47.619 0.00 0.00 0.00 2.52
3652 4642 2.656947 TTTGGTCCCTCAAGTCAAGG 57.343 50.000 0.00 0.00 0.00 3.61
3653 4643 3.490348 ACATTTGGTCCCTCAAGTCAAG 58.510 45.455 0.00 0.00 0.00 3.02
3654 4644 3.117701 TGACATTTGGTCCCTCAAGTCAA 60.118 43.478 0.00 0.00 46.38 3.18
3655 4645 2.441375 TGACATTTGGTCCCTCAAGTCA 59.559 45.455 0.00 0.00 46.38 3.41
3656 4646 2.814336 GTGACATTTGGTCCCTCAAGTC 59.186 50.000 0.00 0.00 46.38 3.01
3657 4647 2.489073 GGTGACATTTGGTCCCTCAAGT 60.489 50.000 0.00 0.00 46.38 3.16
3658 4648 2.162681 GGTGACATTTGGTCCCTCAAG 58.837 52.381 0.00 0.00 46.38 3.02
3659 4649 1.203001 GGGTGACATTTGGTCCCTCAA 60.203 52.381 0.00 0.00 46.38 3.02
3660 4650 0.404040 GGGTGACATTTGGTCCCTCA 59.596 55.000 0.00 0.00 46.38 3.86
3661 4651 0.404040 TGGGTGACATTTGGTCCCTC 59.596 55.000 0.00 0.00 46.38 4.30
3662 4652 0.856982 TTGGGTGACATTTGGTCCCT 59.143 50.000 0.00 0.00 46.38 4.20
3663 4653 1.710816 TTTGGGTGACATTTGGTCCC 58.289 50.000 0.00 0.00 46.38 4.46
3664 4654 3.828875 TTTTTGGGTGACATTTGGTCC 57.171 42.857 0.00 0.00 46.38 4.46
3681 4671 2.702270 AGTGGCCCCTCAAGATTTTT 57.298 45.000 0.00 0.00 0.00 1.94
3682 4672 2.702270 AAGTGGCCCCTCAAGATTTT 57.298 45.000 0.00 0.00 0.00 1.82
3683 4673 2.702270 AAAGTGGCCCCTCAAGATTT 57.298 45.000 0.00 0.00 0.00 2.17
3684 4674 2.702270 AAAAGTGGCCCCTCAAGATT 57.298 45.000 0.00 0.00 0.00 2.40
3685 4675 4.017130 AGAATAAAAGTGGCCCCTCAAGAT 60.017 41.667 0.00 0.00 0.00 2.40
3686 4676 3.333680 AGAATAAAAGTGGCCCCTCAAGA 59.666 43.478 0.00 0.00 0.00 3.02
3687 4677 3.701664 AGAATAAAAGTGGCCCCTCAAG 58.298 45.455 0.00 0.00 0.00 3.02
3688 4678 3.825908 AGAATAAAAGTGGCCCCTCAA 57.174 42.857 0.00 0.00 0.00 3.02
3689 4679 3.825908 AAGAATAAAAGTGGCCCCTCA 57.174 42.857 0.00 0.00 0.00 3.86
3690 4680 4.820897 CAAAAGAATAAAAGTGGCCCCTC 58.179 43.478 0.00 0.00 0.00 4.30
3691 4681 4.890158 CAAAAGAATAAAAGTGGCCCCT 57.110 40.909 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.