Multiple sequence alignment - TraesCS6A01G040100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G040100 chr6A 100.000 3116 0 0 1 3116 20865082 20861967 0.000000e+00 5755
1 TraesCS6A01G040100 chr6A 78.925 1153 210 24 977 2108 35110460 35111600 0.000000e+00 752
2 TraesCS6A01G040100 chr6A 91.549 355 26 4 1 353 580220241 580219889 1.300000e-133 486
3 TraesCS6A01G040100 chr6A 74.051 1133 241 35 998 2106 16531309 16532412 6.220000e-112 414
4 TraesCS6A01G040100 chr6A 89.714 175 12 3 2257 2428 20862663 20862492 5.230000e-53 219
5 TraesCS6A01G040100 chr6A 89.714 175 12 3 2420 2591 20862826 20862655 5.230000e-53 219
6 TraesCS6A01G040100 chr6B 93.302 1702 73 17 907 2591 35596642 35594965 0.000000e+00 2473
7 TraesCS6A01G040100 chr6B 78.646 1152 214 25 977 2108 64318666 64319805 0.000000e+00 736
8 TraesCS6A01G040100 chr6B 91.853 491 27 7 2257 2734 35595145 35594655 0.000000e+00 673
9 TraesCS6A01G040100 chr6B 86.441 413 31 12 481 870 35597052 35596642 2.220000e-116 429
10 TraesCS6A01G040100 chr6B 74.005 1181 241 44 969 2115 27992402 27991254 1.340000e-113 420
11 TraesCS6A01G040100 chr6B 87.671 292 23 6 2825 3116 35594657 35594379 8.330000e-86 327
12 TraesCS6A01G040100 chr6B 90.960 177 9 4 2257 2428 35594973 35594799 6.720000e-57 231
13 TraesCS6A01G040100 chr6B 90.196 153 9 3 2442 2591 35595286 35595137 8.820000e-46 195
14 TraesCS6A01G040100 chr6D 93.420 1231 66 8 1257 2474 20726527 20725299 0.000000e+00 1810
15 TraesCS6A01G040100 chr6D 92.487 386 21 3 849 1229 20726904 20726522 2.110000e-151 545
16 TraesCS6A01G040100 chr6D 91.761 352 28 1 3 353 88532475 88532826 3.610000e-134 488
17 TraesCS6A01G040100 chr6D 73.635 1172 248 39 966 2106 16242940 16244081 2.250000e-106 396
18 TraesCS6A01G040100 chr6D 92.308 169 8 3 2420 2583 20725521 20725353 5.200000e-58 235
19 TraesCS6A01G040100 chr6D 93.220 118 7 1 350 466 312941645 312941528 4.130000e-39 172
20 TraesCS6A01G040100 chr6D 89.024 82 8 1 2234 2314 20725380 20725299 1.980000e-17 100
21 TraesCS6A01G040100 chrUn 79.688 1152 202 22 977 2108 103104232 103105371 0.000000e+00 802
22 TraesCS6A01G040100 chrUn 89.231 130 9 3 351 479 75864896 75864771 1.160000e-34 158
23 TraesCS6A01G040100 chrUn 89.231 130 9 3 351 479 363643002 363642877 1.160000e-34 158
24 TraesCS6A01G040100 chrUn 91.228 114 6 3 2724 2834 305213238 305213126 5.380000e-33 152
25 TraesCS6A01G040100 chr1B 75.236 1167 245 34 970 2113 180549941 180551086 5.960000e-142 514
26 TraesCS6A01G040100 chr5D 92.416 356 23 4 1 353 325480139 325479785 3.590000e-139 505
27 TraesCS6A01G040100 chr5D 89.630 135 11 3 350 481 56039619 56039753 5.340000e-38 169
28 TraesCS6A01G040100 chr2D 91.808 354 26 3 1 353 609507627 609507276 1.000000e-134 490
29 TraesCS6A01G040100 chr2D 92.381 105 6 1 2732 2834 107204177 107204073 6.960000e-32 148
30 TraesCS6A01G040100 chr2D 91.589 107 7 1 2724 2828 593274348 593274242 2.500000e-31 147
31 TraesCS6A01G040100 chr7D 91.549 355 28 2 1 353 463800807 463801161 3.610000e-134 488
32 TraesCS6A01G040100 chr7D 91.954 348 27 1 1 347 426861019 426860672 1.300000e-133 486
33 TraesCS6A01G040100 chr7D 91.525 354 29 1 1 353 481818894 481818541 1.300000e-133 486
34 TraesCS6A01G040100 chr7D 91.525 354 28 2 1 353 481825691 481825339 1.300000e-133 486
35 TraesCS6A01G040100 chr1D 91.525 354 26 4 1 353 203527730 203528080 4.670000e-133 484
36 TraesCS6A01G040100 chr1D 92.593 108 6 1 2730 2835 174151273 174151166 1.500000e-33 154
37 TraesCS6A01G040100 chr1A 74.572 1227 253 41 970 2171 130890525 130891717 1.680000e-132 483
38 TraesCS6A01G040100 chr5A 89.706 136 10 3 350 481 44932641 44932776 1.490000e-38 171
39 TraesCS6A01G040100 chr3A 90.152 132 10 3 350 479 27574457 27574327 5.340000e-38 169
40 TraesCS6A01G040100 chr3A 87.970 133 14 2 357 487 681084160 681084028 4.160000e-34 156
41 TraesCS6A01G040100 chr7A 88.722 133 11 3 350 480 676345273 676345143 3.220000e-35 159
42 TraesCS6A01G040100 chr5B 87.879 132 13 2 350 480 338969957 338969828 5.380000e-33 152
43 TraesCS6A01G040100 chr2A 92.453 106 6 1 2730 2833 604862685 604862790 1.940000e-32 150
44 TraesCS6A01G040100 chr2A 91.589 107 7 1 2723 2827 13287411 13287305 2.500000e-31 147
45 TraesCS6A01G040100 chr2A 90.351 114 5 4 2732 2840 419654384 419654496 9.010000e-31 145
46 TraesCS6A01G040100 chr7B 92.381 105 6 1 2728 2830 244219302 244219406 6.960000e-32 148
47 TraesCS6A01G040100 chr4D 90.909 110 6 3 2721 2827 54412548 54412656 9.010000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G040100 chr6A 20861967 20865082 3115 True 2064.333333 5755 93.142667 1 3116 3 chr6A.!!$R2 3115
1 TraesCS6A01G040100 chr6A 35110460 35111600 1140 False 752.000000 752 78.925000 977 2108 1 chr6A.!!$F2 1131
2 TraesCS6A01G040100 chr6A 16531309 16532412 1103 False 414.000000 414 74.051000 998 2106 1 chr6A.!!$F1 1108
3 TraesCS6A01G040100 chr6B 64318666 64319805 1139 False 736.000000 736 78.646000 977 2108 1 chr6B.!!$F1 1131
4 TraesCS6A01G040100 chr6B 35594379 35597052 2673 True 721.333333 2473 90.070500 481 3116 6 chr6B.!!$R2 2635
5 TraesCS6A01G040100 chr6B 27991254 27992402 1148 True 420.000000 420 74.005000 969 2115 1 chr6B.!!$R1 1146
6 TraesCS6A01G040100 chr6D 20725299 20726904 1605 True 672.500000 1810 91.809750 849 2583 4 chr6D.!!$R2 1734
7 TraesCS6A01G040100 chr6D 16242940 16244081 1141 False 396.000000 396 73.635000 966 2106 1 chr6D.!!$F1 1140
8 TraesCS6A01G040100 chrUn 103104232 103105371 1139 False 802.000000 802 79.688000 977 2108 1 chrUn.!!$F1 1131
9 TraesCS6A01G040100 chr1B 180549941 180551086 1145 False 514.000000 514 75.236000 970 2113 1 chr1B.!!$F1 1143
10 TraesCS6A01G040100 chr1A 130890525 130891717 1192 False 483.000000 483 74.572000 970 2171 1 chr1A.!!$F1 1201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.029035 CGCCTAAGCACTACGACGAT 59.971 55.0 0.00 0.00 39.83 3.73 F
762 784 0.029834 GCATGCATGGTCGATGGTTC 59.970 55.0 27.34 3.43 31.99 3.62 F
874 935 0.107066 ATCCGATTCACCATGCAGCA 60.107 50.0 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 1840 0.322098 CCAACGCCACCACCTCATTA 60.322 55.000 0.0 0.0 0.00 1.90 R
2010 2109 1.483595 CCTTGGGCTGACCTCTCACA 61.484 60.000 0.0 0.0 41.11 3.58 R
2737 3020 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.461300 ATCCAGTTGAGATCGAGGGA 57.539 50.000 0.00 0.00 0.00 4.20
20 21 1.769026 TCCAGTTGAGATCGAGGGAG 58.231 55.000 0.00 0.00 0.00 4.30
21 22 1.285078 TCCAGTTGAGATCGAGGGAGA 59.715 52.381 0.00 0.00 0.00 3.71
22 23 1.680735 CCAGTTGAGATCGAGGGAGAG 59.319 57.143 0.00 0.00 0.00 3.20
23 24 2.374184 CAGTTGAGATCGAGGGAGAGT 58.626 52.381 0.00 0.00 0.00 3.24
24 25 2.757868 CAGTTGAGATCGAGGGAGAGTT 59.242 50.000 0.00 0.00 0.00 3.01
25 26 3.020984 AGTTGAGATCGAGGGAGAGTTC 58.979 50.000 0.00 0.00 0.00 3.01
26 27 2.060050 TGAGATCGAGGGAGAGTTCC 57.940 55.000 0.00 0.00 43.23 3.62
27 28 1.285078 TGAGATCGAGGGAGAGTTCCA 59.715 52.381 0.00 0.00 45.98 3.53
28 29 2.091610 TGAGATCGAGGGAGAGTTCCAT 60.092 50.000 0.00 0.00 45.98 3.41
33 34 3.406442 AGGGAGAGTTCCATCAGCA 57.594 52.632 0.00 0.00 45.98 4.41
34 35 0.908198 AGGGAGAGTTCCATCAGCAC 59.092 55.000 0.00 0.00 45.98 4.40
35 36 0.460987 GGGAGAGTTCCATCAGCACG 60.461 60.000 0.00 0.00 45.98 5.34
36 37 0.532573 GGAGAGTTCCATCAGCACGA 59.467 55.000 0.00 0.00 43.45 4.35
37 38 1.634702 GAGAGTTCCATCAGCACGAC 58.365 55.000 0.00 0.00 0.00 4.34
38 39 0.109086 AGAGTTCCATCAGCACGACG 60.109 55.000 0.00 0.00 0.00 5.12
39 40 1.078759 GAGTTCCATCAGCACGACGG 61.079 60.000 0.00 0.00 0.00 4.79
40 41 2.434185 TTCCATCAGCACGACGGC 60.434 61.111 0.00 0.00 0.00 5.68
41 42 4.794439 TCCATCAGCACGACGGCG 62.794 66.667 10.39 10.39 44.79 6.46
55 56 3.118454 GGCGTGGTGACGGTGATG 61.118 66.667 0.00 0.00 46.20 3.07
56 57 2.048597 GCGTGGTGACGGTGATGA 60.049 61.111 0.00 0.00 46.20 2.92
57 58 1.447838 GCGTGGTGACGGTGATGAT 60.448 57.895 0.00 0.00 46.20 2.45
58 59 1.695893 GCGTGGTGACGGTGATGATG 61.696 60.000 0.00 0.00 46.20 3.07
59 60 0.108851 CGTGGTGACGGTGATGATGA 60.109 55.000 0.00 0.00 42.18 2.92
60 61 1.671556 CGTGGTGACGGTGATGATGAA 60.672 52.381 0.00 0.00 42.18 2.57
61 62 2.002586 GTGGTGACGGTGATGATGAAG 58.997 52.381 0.00 0.00 0.00 3.02
62 63 1.623311 TGGTGACGGTGATGATGAAGT 59.377 47.619 0.00 0.00 0.00 3.01
63 64 2.038426 TGGTGACGGTGATGATGAAGTT 59.962 45.455 0.00 0.00 0.00 2.66
64 65 3.259625 TGGTGACGGTGATGATGAAGTTA 59.740 43.478 0.00 0.00 0.00 2.24
65 66 3.617263 GGTGACGGTGATGATGAAGTTAC 59.383 47.826 0.00 0.00 0.00 2.50
66 67 3.617263 GTGACGGTGATGATGAAGTTACC 59.383 47.826 0.00 0.00 0.00 2.85
68 69 2.201732 CGGTGATGATGAAGTTACCGG 58.798 52.381 0.00 0.00 45.19 5.28
69 70 1.940613 GGTGATGATGAAGTTACCGGC 59.059 52.381 0.00 0.00 0.00 6.13
70 71 1.593006 GTGATGATGAAGTTACCGGCG 59.407 52.381 0.00 0.00 0.00 6.46
71 72 0.582005 GATGATGAAGTTACCGGCGC 59.418 55.000 0.00 0.00 0.00 6.53
72 73 0.107897 ATGATGAAGTTACCGGCGCA 60.108 50.000 10.83 0.00 0.00 6.09
73 74 0.739462 TGATGAAGTTACCGGCGCAG 60.739 55.000 10.83 4.65 0.00 5.18
74 75 1.429148 GATGAAGTTACCGGCGCAGG 61.429 60.000 25.72 25.72 37.30 4.85
75 76 2.818274 GAAGTTACCGGCGCAGGG 60.818 66.667 30.14 22.20 35.02 4.45
79 80 4.770874 TTACCGGCGCAGGGCTTC 62.771 66.667 30.14 0.00 42.94 3.86
95 96 1.546834 CTTCGCCTAAGCACTACGAC 58.453 55.000 0.00 0.00 39.83 4.34
96 97 0.179181 TTCGCCTAAGCACTACGACG 60.179 55.000 0.00 0.00 39.83 5.12
97 98 1.020861 TCGCCTAAGCACTACGACGA 61.021 55.000 0.00 0.00 39.83 4.20
98 99 0.029035 CGCCTAAGCACTACGACGAT 59.971 55.000 0.00 0.00 39.83 3.73
99 100 1.262417 CGCCTAAGCACTACGACGATA 59.738 52.381 0.00 0.00 39.83 2.92
100 101 2.095869 CGCCTAAGCACTACGACGATAT 60.096 50.000 0.00 0.00 39.83 1.63
101 102 3.235195 GCCTAAGCACTACGACGATATG 58.765 50.000 0.00 0.00 39.53 1.78
102 103 3.304525 GCCTAAGCACTACGACGATATGT 60.305 47.826 0.00 0.00 39.53 2.29
103 104 4.465016 CCTAAGCACTACGACGATATGTC 58.535 47.826 0.00 0.00 44.53 3.06
104 105 3.351020 AAGCACTACGACGATATGTCC 57.649 47.619 0.00 0.00 45.23 4.02
105 106 1.263484 AGCACTACGACGATATGTCCG 59.737 52.381 0.00 0.00 45.23 4.79
106 107 1.262417 GCACTACGACGATATGTCCGA 59.738 52.381 0.00 0.00 45.23 4.55
107 108 2.662249 GCACTACGACGATATGTCCGAG 60.662 54.545 0.00 0.00 45.23 4.63
108 109 2.798847 CACTACGACGATATGTCCGAGA 59.201 50.000 0.00 0.00 45.23 4.04
109 110 3.432592 CACTACGACGATATGTCCGAGAT 59.567 47.826 0.00 0.00 45.23 2.75
110 111 2.971430 ACGACGATATGTCCGAGATG 57.029 50.000 0.00 0.00 45.23 2.90
111 112 1.535896 ACGACGATATGTCCGAGATGG 59.464 52.381 0.00 0.00 45.23 3.51
122 123 3.762407 TCCGAGATGGAAAACTGTGAA 57.238 42.857 0.00 0.00 46.38 3.18
123 124 3.664107 TCCGAGATGGAAAACTGTGAAG 58.336 45.455 0.00 0.00 46.38 3.02
124 125 2.744202 CCGAGATGGAAAACTGTGAAGG 59.256 50.000 0.00 0.00 42.00 3.46
125 126 2.744202 CGAGATGGAAAACTGTGAAGGG 59.256 50.000 0.00 0.00 0.00 3.95
126 127 3.084786 GAGATGGAAAACTGTGAAGGGG 58.915 50.000 0.00 0.00 0.00 4.79
127 128 2.171003 GATGGAAAACTGTGAAGGGGG 58.829 52.381 0.00 0.00 0.00 5.40
128 129 1.227249 TGGAAAACTGTGAAGGGGGA 58.773 50.000 0.00 0.00 0.00 4.81
129 130 1.133606 TGGAAAACTGTGAAGGGGGAC 60.134 52.381 0.00 0.00 0.00 4.46
130 131 1.133606 GGAAAACTGTGAAGGGGGACA 60.134 52.381 0.00 0.00 0.00 4.02
131 132 1.954382 GAAAACTGTGAAGGGGGACAC 59.046 52.381 0.00 0.00 37.51 3.67
132 133 0.185175 AAACTGTGAAGGGGGACACC 59.815 55.000 0.00 0.00 36.35 4.16
133 134 2.052047 AACTGTGAAGGGGGACACCG 62.052 60.000 0.00 0.00 41.60 4.94
134 135 2.446994 TGTGAAGGGGGACACCGT 60.447 61.111 0.00 0.00 41.60 4.83
135 136 1.152290 TGTGAAGGGGGACACCGTA 60.152 57.895 0.00 0.00 41.60 4.02
136 137 1.294459 GTGAAGGGGGACACCGTAC 59.706 63.158 0.00 0.00 41.60 3.67
137 138 1.152290 TGAAGGGGGACACCGTACA 60.152 57.895 0.00 0.00 41.60 2.90
138 139 1.294459 GAAGGGGGACACCGTACAC 59.706 63.158 0.00 0.00 41.60 2.90
139 140 2.496828 GAAGGGGGACACCGTACACG 62.497 65.000 0.00 0.00 41.60 4.49
153 154 4.240883 CGTACACGGCTAAGAAATCAAC 57.759 45.455 0.00 0.00 35.37 3.18
154 155 3.924686 CGTACACGGCTAAGAAATCAACT 59.075 43.478 0.00 0.00 35.37 3.16
155 156 4.387862 CGTACACGGCTAAGAAATCAACTT 59.612 41.667 0.00 0.00 35.37 2.66
156 157 4.749245 ACACGGCTAAGAAATCAACTTG 57.251 40.909 0.00 0.00 0.00 3.16
157 158 4.134563 ACACGGCTAAGAAATCAACTTGT 58.865 39.130 0.00 0.00 0.00 3.16
158 159 4.024048 ACACGGCTAAGAAATCAACTTGTG 60.024 41.667 0.00 0.00 0.00 3.33
159 160 4.024048 CACGGCTAAGAAATCAACTTGTGT 60.024 41.667 0.00 0.00 0.00 3.72
160 161 4.024048 ACGGCTAAGAAATCAACTTGTGTG 60.024 41.667 0.00 0.00 0.00 3.82
161 162 4.024048 CGGCTAAGAAATCAACTTGTGTGT 60.024 41.667 0.00 0.00 0.00 3.72
162 163 5.452777 GGCTAAGAAATCAACTTGTGTGTC 58.547 41.667 0.00 0.00 0.00 3.67
163 164 5.239525 GGCTAAGAAATCAACTTGTGTGTCT 59.760 40.000 0.00 0.00 0.00 3.41
164 165 6.238759 GGCTAAGAAATCAACTTGTGTGTCTT 60.239 38.462 0.00 7.22 31.85 3.01
165 166 6.634436 GCTAAGAAATCAACTTGTGTGTCTTG 59.366 38.462 10.26 0.00 30.57 3.02
166 167 6.757897 AAGAAATCAACTTGTGTGTCTTGA 57.242 33.333 0.00 0.00 0.00 3.02
167 168 6.369059 AGAAATCAACTTGTGTGTCTTGAG 57.631 37.500 0.00 0.00 0.00 3.02
168 169 6.115446 AGAAATCAACTTGTGTGTCTTGAGA 58.885 36.000 0.00 0.00 0.00 3.27
169 170 6.769822 AGAAATCAACTTGTGTGTCTTGAGAT 59.230 34.615 0.00 0.00 0.00 2.75
170 171 5.936686 ATCAACTTGTGTGTCTTGAGATG 57.063 39.130 0.00 0.00 0.00 2.90
171 172 3.561310 TCAACTTGTGTGTCTTGAGATGC 59.439 43.478 0.00 0.00 0.00 3.91
172 173 2.498167 ACTTGTGTGTCTTGAGATGCC 58.502 47.619 0.00 0.00 0.00 4.40
173 174 1.808945 CTTGTGTGTCTTGAGATGCCC 59.191 52.381 0.00 0.00 0.00 5.36
174 175 0.036732 TGTGTGTCTTGAGATGCCCC 59.963 55.000 0.00 0.00 0.00 5.80
175 176 0.678048 GTGTGTCTTGAGATGCCCCC 60.678 60.000 0.00 0.00 0.00 5.40
176 177 0.842030 TGTGTCTTGAGATGCCCCCT 60.842 55.000 0.00 0.00 0.00 4.79
177 178 0.329596 GTGTCTTGAGATGCCCCCTT 59.670 55.000 0.00 0.00 0.00 3.95
178 179 0.329261 TGTCTTGAGATGCCCCCTTG 59.671 55.000 0.00 0.00 0.00 3.61
179 180 0.620556 GTCTTGAGATGCCCCCTTGA 59.379 55.000 0.00 0.00 0.00 3.02
180 181 0.620556 TCTTGAGATGCCCCCTTGAC 59.379 55.000 0.00 0.00 0.00 3.18
181 182 0.394899 CTTGAGATGCCCCCTTGACC 60.395 60.000 0.00 0.00 0.00 4.02
182 183 1.139498 TTGAGATGCCCCCTTGACCA 61.139 55.000 0.00 0.00 0.00 4.02
183 184 1.077429 GAGATGCCCCCTTGACCAC 60.077 63.158 0.00 0.00 0.00 4.16
184 185 2.438434 GATGCCCCCTTGACCACG 60.438 66.667 0.00 0.00 0.00 4.94
185 186 3.256960 ATGCCCCCTTGACCACGT 61.257 61.111 0.00 0.00 0.00 4.49
186 187 1.906105 GATGCCCCCTTGACCACGTA 61.906 60.000 0.00 0.00 0.00 3.57
187 188 1.279025 ATGCCCCCTTGACCACGTAT 61.279 55.000 0.00 0.00 0.00 3.06
188 189 0.618107 TGCCCCCTTGACCACGTATA 60.618 55.000 0.00 0.00 0.00 1.47
189 190 0.763035 GCCCCCTTGACCACGTATAT 59.237 55.000 0.00 0.00 0.00 0.86
190 191 1.972795 GCCCCCTTGACCACGTATATA 59.027 52.381 0.00 0.00 0.00 0.86
191 192 2.369532 GCCCCCTTGACCACGTATATAA 59.630 50.000 0.00 0.00 0.00 0.98
192 193 3.181452 GCCCCCTTGACCACGTATATAAA 60.181 47.826 0.00 0.00 0.00 1.40
193 194 4.506095 GCCCCCTTGACCACGTATATAAAT 60.506 45.833 0.00 0.00 0.00 1.40
194 195 5.001232 CCCCCTTGACCACGTATATAAATG 58.999 45.833 0.00 0.00 0.00 2.32
195 196 5.221762 CCCCCTTGACCACGTATATAAATGA 60.222 44.000 0.00 0.00 0.00 2.57
196 197 5.932303 CCCCTTGACCACGTATATAAATGAG 59.068 44.000 0.00 0.00 0.00 2.90
197 198 5.932303 CCCTTGACCACGTATATAAATGAGG 59.068 44.000 0.00 0.00 0.00 3.86
198 199 5.932303 CCTTGACCACGTATATAAATGAGGG 59.068 44.000 0.00 0.00 0.00 4.30
199 200 6.239487 CCTTGACCACGTATATAAATGAGGGA 60.239 42.308 0.00 0.00 0.00 4.20
200 201 6.340962 TGACCACGTATATAAATGAGGGAG 57.659 41.667 0.00 0.00 0.00 4.30
201 202 6.072649 TGACCACGTATATAAATGAGGGAGA 58.927 40.000 0.00 0.00 0.00 3.71
202 203 6.551975 TGACCACGTATATAAATGAGGGAGAA 59.448 38.462 0.00 0.00 0.00 2.87
203 204 6.994221 ACCACGTATATAAATGAGGGAGAAG 58.006 40.000 0.00 0.00 0.00 2.85
204 205 6.014499 ACCACGTATATAAATGAGGGAGAAGG 60.014 42.308 0.00 0.00 0.00 3.46
205 206 6.210784 CCACGTATATAAATGAGGGAGAAGGA 59.789 42.308 0.00 0.00 0.00 3.36
206 207 7.316640 CACGTATATAAATGAGGGAGAAGGAG 58.683 42.308 0.00 0.00 0.00 3.69
207 208 6.437793 ACGTATATAAATGAGGGAGAAGGAGG 59.562 42.308 0.00 0.00 0.00 4.30
208 209 6.663953 CGTATATAAATGAGGGAGAAGGAGGA 59.336 42.308 0.00 0.00 0.00 3.71
209 210 7.147983 CGTATATAAATGAGGGAGAAGGAGGAG 60.148 44.444 0.00 0.00 0.00 3.69
210 211 2.188818 AATGAGGGAGAAGGAGGAGG 57.811 55.000 0.00 0.00 0.00 4.30
211 212 0.399806 ATGAGGGAGAAGGAGGAGGC 60.400 60.000 0.00 0.00 0.00 4.70
212 213 1.764454 GAGGGAGAAGGAGGAGGCC 60.764 68.421 0.00 0.00 0.00 5.19
213 214 3.157949 GGGAGAAGGAGGAGGCCG 61.158 72.222 0.00 0.00 0.00 6.13
214 215 3.157949 GGAGAAGGAGGAGGCCGG 61.158 72.222 0.00 0.00 0.00 6.13
215 216 3.855853 GAGAAGGAGGAGGCCGGC 61.856 72.222 21.18 21.18 0.00 6.13
233 234 2.123425 CTAGGAGGGGCGCACCTA 60.123 66.667 35.69 23.43 42.10 3.08
234 235 1.534235 CTAGGAGGGGCGCACCTAT 60.534 63.158 35.69 26.05 42.10 2.57
235 236 0.251653 CTAGGAGGGGCGCACCTATA 60.252 60.000 35.69 25.75 42.10 1.31
236 237 0.251653 TAGGAGGGGCGCACCTATAG 60.252 60.000 35.69 0.00 42.10 1.31
237 238 2.584391 GGAGGGGCGCACCTATAGG 61.584 68.421 35.69 17.73 42.10 2.57
238 239 2.526873 AGGGGCGCACCTATAGGG 60.527 66.667 34.70 12.53 39.65 3.53
239 240 3.637273 GGGGCGCACCTATAGGGG 61.637 72.222 24.98 20.35 43.01 4.79
240 241 3.637273 GGGCGCACCTATAGGGGG 61.637 72.222 22.80 18.55 39.60 5.40
241 242 2.525877 GGCGCACCTATAGGGGGA 60.526 66.667 22.80 0.00 42.32 4.81
242 243 2.584391 GGCGCACCTATAGGGGGAG 61.584 68.421 22.80 15.96 42.32 4.30
243 244 1.837499 GCGCACCTATAGGGGGAGT 60.837 63.158 22.80 0.00 42.32 3.85
244 245 1.817911 GCGCACCTATAGGGGGAGTC 61.818 65.000 22.80 4.76 42.32 3.36
245 246 1.186267 CGCACCTATAGGGGGAGTCC 61.186 65.000 22.80 0.00 42.32 3.85
246 247 0.105142 GCACCTATAGGGGGAGTCCA 60.105 60.000 22.80 0.00 42.32 4.02
247 248 1.694693 GCACCTATAGGGGGAGTCCAA 60.695 57.143 22.80 0.00 42.32 3.53
248 249 2.047830 CACCTATAGGGGGAGTCCAAC 58.952 57.143 22.91 2.76 42.32 3.77
249 250 1.945317 ACCTATAGGGGGAGTCCAACT 59.055 52.381 22.91 10.66 40.27 3.16
250 251 3.116862 CACCTATAGGGGGAGTCCAACTA 60.117 52.174 22.91 12.58 42.32 2.24
251 252 3.142407 ACCTATAGGGGGAGTCCAACTAG 59.858 52.174 22.91 3.65 40.27 2.57
252 253 2.797285 ATAGGGGGAGTCCAACTAGG 57.203 55.000 12.30 0.00 37.22 3.02
253 254 1.702699 TAGGGGGAGTCCAACTAGGA 58.297 55.000 12.30 0.00 46.75 2.94
275 276 5.612351 GATTCCCAATCCTAGTTGTAGTCC 58.388 45.833 0.00 0.00 31.60 3.85
276 277 3.381335 TCCCAATCCTAGTTGTAGTCCC 58.619 50.000 0.00 0.00 0.00 4.46
277 278 3.013648 TCCCAATCCTAGTTGTAGTCCCT 59.986 47.826 0.00 0.00 0.00 4.20
278 279 3.780850 CCCAATCCTAGTTGTAGTCCCTT 59.219 47.826 0.00 0.00 0.00 3.95
279 280 4.227527 CCCAATCCTAGTTGTAGTCCCTTT 59.772 45.833 0.00 0.00 0.00 3.11
280 281 5.429130 CCAATCCTAGTTGTAGTCCCTTTC 58.571 45.833 0.00 0.00 0.00 2.62
281 282 5.429130 CAATCCTAGTTGTAGTCCCTTTCC 58.571 45.833 0.00 0.00 0.00 3.13
282 283 4.415224 TCCTAGTTGTAGTCCCTTTCCT 57.585 45.455 0.00 0.00 0.00 3.36
283 284 4.759953 TCCTAGTTGTAGTCCCTTTCCTT 58.240 43.478 0.00 0.00 0.00 3.36
284 285 5.160386 TCCTAGTTGTAGTCCCTTTCCTTT 58.840 41.667 0.00 0.00 0.00 3.11
285 286 5.609708 TCCTAGTTGTAGTCCCTTTCCTTTT 59.390 40.000 0.00 0.00 0.00 2.27
286 287 5.938710 CCTAGTTGTAGTCCCTTTCCTTTTC 59.061 44.000 0.00 0.00 0.00 2.29
287 288 4.726583 AGTTGTAGTCCCTTTCCTTTTCC 58.273 43.478 0.00 0.00 0.00 3.13
288 289 4.167307 AGTTGTAGTCCCTTTCCTTTTCCA 59.833 41.667 0.00 0.00 0.00 3.53
289 290 4.799715 TGTAGTCCCTTTCCTTTTCCAA 57.200 40.909 0.00 0.00 0.00 3.53
290 291 4.725490 TGTAGTCCCTTTCCTTTTCCAAG 58.275 43.478 0.00 0.00 0.00 3.61
291 292 4.414182 TGTAGTCCCTTTCCTTTTCCAAGA 59.586 41.667 0.00 0.00 30.57 3.02
292 293 4.105754 AGTCCCTTTCCTTTTCCAAGAG 57.894 45.455 0.00 0.00 30.57 2.85
293 294 3.157881 GTCCCTTTCCTTTTCCAAGAGG 58.842 50.000 0.00 0.00 30.57 3.69
294 295 2.110011 TCCCTTTCCTTTTCCAAGAGGG 59.890 50.000 0.00 0.00 40.76 4.30
295 296 2.529632 CCTTTCCTTTTCCAAGAGGGG 58.470 52.381 0.00 0.00 37.22 4.79
296 297 2.529632 CTTTCCTTTTCCAAGAGGGGG 58.470 52.381 0.00 0.00 37.22 5.40
297 298 1.841334 TTCCTTTTCCAAGAGGGGGA 58.159 50.000 0.00 0.00 37.22 4.81
298 299 1.372501 TCCTTTTCCAAGAGGGGGAG 58.627 55.000 0.00 0.00 35.46 4.30
299 300 1.132201 TCCTTTTCCAAGAGGGGGAGA 60.132 52.381 0.00 0.00 35.46 3.71
300 301 1.283321 CCTTTTCCAAGAGGGGGAGAG 59.717 57.143 0.00 0.00 35.46 3.20
301 302 1.283321 CTTTTCCAAGAGGGGGAGAGG 59.717 57.143 0.00 0.00 35.46 3.69
302 303 0.496382 TTTCCAAGAGGGGGAGAGGA 59.504 55.000 0.00 0.00 35.46 3.71
303 304 0.496382 TTCCAAGAGGGGGAGAGGAA 59.504 55.000 0.00 0.00 35.46 3.36
304 305 0.496382 TCCAAGAGGGGGAGAGGAAA 59.504 55.000 0.00 0.00 37.22 3.13
305 306 0.915364 CCAAGAGGGGGAGAGGAAAG 59.085 60.000 0.00 0.00 0.00 2.62
306 307 0.915364 CAAGAGGGGGAGAGGAAAGG 59.085 60.000 0.00 0.00 0.00 3.11
307 308 0.800239 AAGAGGGGGAGAGGAAAGGA 59.200 55.000 0.00 0.00 0.00 3.36
308 309 0.341609 AGAGGGGGAGAGGAAAGGAG 59.658 60.000 0.00 0.00 0.00 3.69
309 310 0.043485 GAGGGGGAGAGGAAAGGAGT 59.957 60.000 0.00 0.00 0.00 3.85
310 311 1.291335 GAGGGGGAGAGGAAAGGAGTA 59.709 57.143 0.00 0.00 0.00 2.59
311 312 1.292546 AGGGGGAGAGGAAAGGAGTAG 59.707 57.143 0.00 0.00 0.00 2.57
312 313 1.693083 GGGGGAGAGGAAAGGAGTAGG 60.693 61.905 0.00 0.00 0.00 3.18
313 314 1.291335 GGGGAGAGGAAAGGAGTAGGA 59.709 57.143 0.00 0.00 0.00 2.94
314 315 2.673258 GGGAGAGGAAAGGAGTAGGAG 58.327 57.143 0.00 0.00 0.00 3.69
315 316 2.245287 GGGAGAGGAAAGGAGTAGGAGA 59.755 54.545 0.00 0.00 0.00 3.71
316 317 3.562182 GGAGAGGAAAGGAGTAGGAGAG 58.438 54.545 0.00 0.00 0.00 3.20
317 318 3.562182 GAGAGGAAAGGAGTAGGAGAGG 58.438 54.545 0.00 0.00 0.00 3.69
318 319 2.246327 AGAGGAAAGGAGTAGGAGAGGG 59.754 54.545 0.00 0.00 0.00 4.30
319 320 2.245287 GAGGAAAGGAGTAGGAGAGGGA 59.755 54.545 0.00 0.00 0.00 4.20
320 321 2.246327 AGGAAAGGAGTAGGAGAGGGAG 59.754 54.545 0.00 0.00 0.00 4.30
321 322 2.245287 GGAAAGGAGTAGGAGAGGGAGA 59.755 54.545 0.00 0.00 0.00 3.71
322 323 3.309994 GGAAAGGAGTAGGAGAGGGAGAA 60.310 52.174 0.00 0.00 0.00 2.87
323 324 3.680777 AAGGAGTAGGAGAGGGAGAAG 57.319 52.381 0.00 0.00 0.00 2.85
324 325 1.856920 AGGAGTAGGAGAGGGAGAAGG 59.143 57.143 0.00 0.00 0.00 3.46
325 326 1.854280 GGAGTAGGAGAGGGAGAAGGA 59.146 57.143 0.00 0.00 0.00 3.36
326 327 2.245287 GGAGTAGGAGAGGGAGAAGGAA 59.755 54.545 0.00 0.00 0.00 3.36
327 328 3.309994 GGAGTAGGAGAGGGAGAAGGAAA 60.310 52.174 0.00 0.00 0.00 3.13
328 329 3.958147 GAGTAGGAGAGGGAGAAGGAAAG 59.042 52.174 0.00 0.00 0.00 2.62
329 330 3.598782 AGTAGGAGAGGGAGAAGGAAAGA 59.401 47.826 0.00 0.00 0.00 2.52
330 331 3.114643 AGGAGAGGGAGAAGGAAAGAG 57.885 52.381 0.00 0.00 0.00 2.85
331 332 2.657459 AGGAGAGGGAGAAGGAAAGAGA 59.343 50.000 0.00 0.00 0.00 3.10
332 333 3.031013 GGAGAGGGAGAAGGAAAGAGAG 58.969 54.545 0.00 0.00 0.00 3.20
333 334 3.031013 GAGAGGGAGAAGGAAAGAGAGG 58.969 54.545 0.00 0.00 0.00 3.69
334 335 2.115427 GAGGGAGAAGGAAAGAGAGGG 58.885 57.143 0.00 0.00 0.00 4.30
335 336 1.208706 GGGAGAAGGAAAGAGAGGGG 58.791 60.000 0.00 0.00 0.00 4.79
336 337 1.208706 GGAGAAGGAAAGAGAGGGGG 58.791 60.000 0.00 0.00 0.00 5.40
359 360 3.984732 GCCCCCTGCCTCAAGGTT 61.985 66.667 0.00 0.00 35.34 3.50
360 361 2.854076 CCCCCTGCCTCAAGGTTT 59.146 61.111 0.00 0.00 35.34 3.27
361 362 2.083715 CCCCCTGCCTCAAGGTTTA 58.916 57.895 0.00 0.00 35.34 2.01
362 363 0.631212 CCCCCTGCCTCAAGGTTTAT 59.369 55.000 0.00 0.00 35.34 1.40
363 364 1.007118 CCCCCTGCCTCAAGGTTTATT 59.993 52.381 0.00 0.00 35.34 1.40
364 365 2.559705 CCCCCTGCCTCAAGGTTTATTT 60.560 50.000 0.00 0.00 35.34 1.40
365 366 3.173151 CCCCTGCCTCAAGGTTTATTTT 58.827 45.455 0.00 0.00 35.34 1.82
366 367 3.582647 CCCCTGCCTCAAGGTTTATTTTT 59.417 43.478 0.00 0.00 35.34 1.94
367 368 4.322725 CCCCTGCCTCAAGGTTTATTTTTC 60.323 45.833 0.00 0.00 35.34 2.29
368 369 4.485163 CCTGCCTCAAGGTTTATTTTTCG 58.515 43.478 0.00 0.00 37.57 3.46
369 370 3.908213 TGCCTCAAGGTTTATTTTTCGC 58.092 40.909 0.00 0.00 37.57 4.70
370 371 3.572255 TGCCTCAAGGTTTATTTTTCGCT 59.428 39.130 0.00 0.00 37.57 4.93
371 372 4.038642 TGCCTCAAGGTTTATTTTTCGCTT 59.961 37.500 0.00 0.00 37.57 4.68
372 373 4.988540 GCCTCAAGGTTTATTTTTCGCTTT 59.011 37.500 0.00 0.00 37.57 3.51
373 374 5.465390 GCCTCAAGGTTTATTTTTCGCTTTT 59.535 36.000 0.00 0.00 37.57 2.27
374 375 6.018262 GCCTCAAGGTTTATTTTTCGCTTTTT 60.018 34.615 0.00 0.00 37.57 1.94
390 391 1.970092 TTTTTCCGGGTTGATGACGT 58.030 45.000 0.00 0.00 0.00 4.34
391 392 1.970092 TTTTCCGGGTTGATGACGTT 58.030 45.000 0.00 0.00 0.00 3.99
392 393 1.515081 TTTCCGGGTTGATGACGTTC 58.485 50.000 0.00 0.00 0.00 3.95
393 394 0.668096 TTCCGGGTTGATGACGTTCG 60.668 55.000 0.00 0.00 0.00 3.95
394 395 2.098233 CCGGGTTGATGACGTTCGG 61.098 63.158 0.00 0.00 33.26 4.30
395 396 2.736682 CGGGTTGATGACGTTCGGC 61.737 63.158 0.00 0.00 0.00 5.54
396 397 1.375523 GGGTTGATGACGTTCGGCT 60.376 57.895 0.00 0.00 0.00 5.52
397 398 1.635663 GGGTTGATGACGTTCGGCTG 61.636 60.000 0.00 0.00 0.00 4.85
398 399 1.132640 GTTGATGACGTTCGGCTGC 59.867 57.895 0.00 0.00 0.00 5.25
399 400 1.005037 TTGATGACGTTCGGCTGCT 60.005 52.632 0.00 0.00 0.00 4.24
400 401 1.291184 TTGATGACGTTCGGCTGCTG 61.291 55.000 0.95 0.95 0.00 4.41
401 402 2.434884 ATGACGTTCGGCTGCTGG 60.435 61.111 8.89 0.00 0.00 4.85
402 403 2.835701 GATGACGTTCGGCTGCTGGA 62.836 60.000 8.89 0.00 0.00 3.86
403 404 2.125512 GACGTTCGGCTGCTGGAT 60.126 61.111 8.89 0.00 0.00 3.41
404 405 1.741770 GACGTTCGGCTGCTGGATT 60.742 57.895 8.89 0.00 0.00 3.01
405 406 1.298859 GACGTTCGGCTGCTGGATTT 61.299 55.000 8.89 0.00 0.00 2.17
406 407 0.889186 ACGTTCGGCTGCTGGATTTT 60.889 50.000 8.89 0.00 0.00 1.82
407 408 0.454957 CGTTCGGCTGCTGGATTTTG 60.455 55.000 8.89 0.00 0.00 2.44
408 409 0.733909 GTTCGGCTGCTGGATTTTGC 60.734 55.000 8.89 0.00 0.00 3.68
409 410 1.177895 TTCGGCTGCTGGATTTTGCA 61.178 50.000 8.89 0.00 37.63 4.08
410 411 1.444895 CGGCTGCTGGATTTTGCAC 60.445 57.895 0.00 0.00 35.20 4.57
411 412 1.870055 CGGCTGCTGGATTTTGCACT 61.870 55.000 0.00 0.00 35.20 4.40
412 413 1.176527 GGCTGCTGGATTTTGCACTA 58.823 50.000 0.00 0.00 35.20 2.74
413 414 1.753073 GGCTGCTGGATTTTGCACTAT 59.247 47.619 0.00 0.00 35.20 2.12
414 415 2.167075 GGCTGCTGGATTTTGCACTATT 59.833 45.455 0.00 0.00 35.20 1.73
415 416 3.381272 GGCTGCTGGATTTTGCACTATTA 59.619 43.478 0.00 0.00 35.20 0.98
416 417 4.142182 GGCTGCTGGATTTTGCACTATTAA 60.142 41.667 0.00 0.00 35.20 1.40
417 418 5.452356 GGCTGCTGGATTTTGCACTATTAAT 60.452 40.000 0.00 0.00 35.20 1.40
418 419 6.239008 GGCTGCTGGATTTTGCACTATTAATA 60.239 38.462 0.00 0.00 35.20 0.98
419 420 7.202526 GCTGCTGGATTTTGCACTATTAATAA 58.797 34.615 0.00 0.00 35.20 1.40
420 421 7.869429 GCTGCTGGATTTTGCACTATTAATAAT 59.131 33.333 0.00 0.00 35.20 1.28
431 432 9.460019 TTGCACTATTAATAATATATGGCTGCA 57.540 29.630 0.50 0.00 0.00 4.41
432 433 9.631257 TGCACTATTAATAATATATGGCTGCAT 57.369 29.630 0.50 0.00 0.00 3.96
433 434 9.888878 GCACTATTAATAATATATGGCTGCATG 57.111 33.333 0.50 0.00 0.00 4.06
440 441 7.997773 ATAATATATGGCTGCATGATCATCC 57.002 36.000 4.86 4.67 0.00 3.51
441 442 5.648330 ATATATGGCTGCATGATCATCCT 57.352 39.130 4.86 0.00 0.00 3.24
442 443 1.911057 ATGGCTGCATGATCATCCTG 58.089 50.000 4.86 1.72 0.00 3.86
443 444 0.841289 TGGCTGCATGATCATCCTGA 59.159 50.000 4.86 0.00 0.00 3.86
444 445 1.423921 TGGCTGCATGATCATCCTGAT 59.576 47.619 4.86 0.00 40.34 2.90
445 446 1.813178 GGCTGCATGATCATCCTGATG 59.187 52.381 4.86 0.55 37.20 3.07
446 447 1.200252 GCTGCATGATCATCCTGATGC 59.800 52.381 4.86 7.52 37.20 3.91
447 448 2.504367 CTGCATGATCATCCTGATGCA 58.496 47.619 16.30 16.30 37.51 3.96
448 449 2.485814 CTGCATGATCATCCTGATGCAG 59.514 50.000 24.54 24.54 45.53 4.41
449 450 2.105821 TGCATGATCATCCTGATGCAGA 59.894 45.455 13.91 0.00 35.67 4.26
450 451 2.744741 GCATGATCATCCTGATGCAGAG 59.255 50.000 4.86 0.00 37.20 3.35
451 452 3.339141 CATGATCATCCTGATGCAGAGG 58.661 50.000 4.86 8.07 37.20 3.69
452 453 1.071857 TGATCATCCTGATGCAGAGGC 59.928 52.381 9.34 0.00 37.20 4.70
453 454 0.400975 ATCATCCTGATGCAGAGGCC 59.599 55.000 9.34 0.00 35.43 5.19
454 455 1.597302 CATCCTGATGCAGAGGCCG 60.597 63.158 9.34 0.43 40.13 6.13
455 456 2.815945 ATCCTGATGCAGAGGCCGG 61.816 63.158 9.34 0.00 40.13 6.13
456 457 4.559063 CCTGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
457 458 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
461 462 3.792325 ATGCAGAGGCCGGGGGATA 62.792 63.158 2.18 0.00 40.13 2.59
462 463 2.930562 GCAGAGGCCGGGGGATAT 60.931 66.667 2.18 0.00 0.00 1.63
463 464 2.960688 GCAGAGGCCGGGGGATATC 61.961 68.421 2.18 0.00 0.00 1.63
464 465 2.122954 AGAGGCCGGGGGATATCC 59.877 66.667 13.87 13.87 0.00 2.59
465 466 2.122954 GAGGCCGGGGGATATCCT 59.877 66.667 21.18 0.00 35.95 3.24
466 467 1.990614 GAGGCCGGGGGATATCCTC 60.991 68.421 21.18 17.78 36.86 3.71
521 522 6.263842 GCAGGTCAATAGAAATCAATGGATCA 59.736 38.462 0.00 0.00 31.88 2.92
539 540 6.174451 GGATCATGTCCATAACATCGAATG 57.826 41.667 8.84 0.00 45.78 2.67
544 546 4.837972 TGTCCATAACATCGAATGAACCA 58.162 39.130 0.00 0.00 31.20 3.67
637 644 5.643379 AGCATATGTGAAACGAATTTGGT 57.357 34.783 4.29 0.00 42.39 3.67
640 647 5.861251 GCATATGTGAAACGAATTTGGTGAA 59.139 36.000 4.29 0.00 42.39 3.18
642 649 7.253750 GCATATGTGAAACGAATTTGGTGAATC 60.254 37.037 4.29 0.00 42.39 2.52
654 661 7.095523 CGAATTTGGTGAATCATTTGCTTCTTT 60.096 33.333 0.00 0.00 0.00 2.52
656 663 6.847956 TTGGTGAATCATTTGCTTCTTTTG 57.152 33.333 0.00 0.00 0.00 2.44
658 665 6.347696 TGGTGAATCATTTGCTTCTTTTGTT 58.652 32.000 0.00 0.00 0.00 2.83
659 666 6.822676 TGGTGAATCATTTGCTTCTTTTGTTT 59.177 30.769 0.00 0.00 0.00 2.83
660 667 7.011295 TGGTGAATCATTTGCTTCTTTTGTTTC 59.989 33.333 0.00 0.00 0.00 2.78
692 714 4.899502 ACAGATTTTCCAGGTGTGAGTAG 58.100 43.478 0.00 0.00 0.00 2.57
751 773 1.093496 TCTCGAAGGCTGCATGCATG 61.093 55.000 22.97 22.70 45.15 4.06
754 776 1.436336 GAAGGCTGCATGCATGGTC 59.564 57.895 27.34 12.50 45.15 4.02
762 784 0.029834 GCATGCATGGTCGATGGTTC 59.970 55.000 27.34 3.43 31.99 3.62
798 820 4.768130 GATCAGAATCGGTTAGGATCGA 57.232 45.455 6.15 0.00 39.79 3.59
809 833 6.181190 TCGGTTAGGATCGATTGAGATCTAT 58.819 40.000 0.00 0.00 44.71 1.98
870 931 5.470098 ACAATTACTATCCGATTCACCATGC 59.530 40.000 0.00 0.00 0.00 4.06
871 932 4.681074 TTACTATCCGATTCACCATGCA 57.319 40.909 0.00 0.00 0.00 3.96
873 934 1.802960 CTATCCGATTCACCATGCAGC 59.197 52.381 0.00 0.00 0.00 5.25
874 935 0.107066 ATCCGATTCACCATGCAGCA 60.107 50.000 0.00 0.00 0.00 4.41
876 937 1.061411 CGATTCACCATGCAGCACG 59.939 57.895 0.00 0.00 0.00 5.34
877 938 1.360931 CGATTCACCATGCAGCACGA 61.361 55.000 0.00 0.00 0.00 4.35
878 939 1.019673 GATTCACCATGCAGCACGAT 58.980 50.000 0.00 0.00 0.00 3.73
879 940 2.212652 GATTCACCATGCAGCACGATA 58.787 47.619 0.00 0.00 0.00 2.92
880 941 2.330440 TTCACCATGCAGCACGATAT 57.670 45.000 0.00 0.00 0.00 1.63
881 942 2.330440 TCACCATGCAGCACGATATT 57.670 45.000 0.00 0.00 0.00 1.28
882 943 2.642427 TCACCATGCAGCACGATATTT 58.358 42.857 0.00 0.00 0.00 1.40
883 944 3.016031 TCACCATGCAGCACGATATTTT 58.984 40.909 0.00 0.00 0.00 1.82
884 945 3.065233 TCACCATGCAGCACGATATTTTC 59.935 43.478 0.00 0.00 0.00 2.29
885 946 3.016031 ACCATGCAGCACGATATTTTCA 58.984 40.909 0.00 0.00 0.00 2.69
886 947 3.065786 ACCATGCAGCACGATATTTTCAG 59.934 43.478 0.00 0.00 0.00 3.02
887 948 3.065786 CCATGCAGCACGATATTTTCAGT 59.934 43.478 0.00 0.00 0.00 3.41
888 949 3.745332 TGCAGCACGATATTTTCAGTG 57.255 42.857 0.00 0.00 37.63 3.66
889 950 3.333804 TGCAGCACGATATTTTCAGTGA 58.666 40.909 0.00 0.00 36.79 3.41
890 951 3.125146 TGCAGCACGATATTTTCAGTGAC 59.875 43.478 0.00 0.00 36.79 3.67
891 952 3.125146 GCAGCACGATATTTTCAGTGACA 59.875 43.478 0.00 0.00 36.79 3.58
892 953 4.378356 GCAGCACGATATTTTCAGTGACAA 60.378 41.667 0.00 0.00 36.79 3.18
893 954 5.082059 CAGCACGATATTTTCAGTGACAAC 58.918 41.667 0.00 0.00 36.79 3.32
894 955 4.154195 AGCACGATATTTTCAGTGACAACC 59.846 41.667 0.00 0.00 36.79 3.77
895 956 4.154195 GCACGATATTTTCAGTGACAACCT 59.846 41.667 0.00 0.00 36.79 3.50
896 957 5.334879 GCACGATATTTTCAGTGACAACCTT 60.335 40.000 0.00 0.00 36.79 3.50
897 958 6.079763 CACGATATTTTCAGTGACAACCTTG 58.920 40.000 0.00 0.00 36.79 3.61
898 959 5.088739 CGATATTTTCAGTGACAACCTTGC 58.911 41.667 0.00 0.00 0.00 4.01
899 960 3.733443 ATTTTCAGTGACAACCTTGCC 57.267 42.857 0.00 0.00 0.00 4.52
900 961 2.435372 TTTCAGTGACAACCTTGCCT 57.565 45.000 0.00 0.00 0.00 4.75
901 962 3.569194 TTTCAGTGACAACCTTGCCTA 57.431 42.857 0.00 0.00 0.00 3.93
902 963 3.569194 TTCAGTGACAACCTTGCCTAA 57.431 42.857 0.00 0.00 0.00 2.69
903 964 3.569194 TCAGTGACAACCTTGCCTAAA 57.431 42.857 0.00 0.00 0.00 1.85
904 965 4.098914 TCAGTGACAACCTTGCCTAAAT 57.901 40.909 0.00 0.00 0.00 1.40
905 966 3.820467 TCAGTGACAACCTTGCCTAAATG 59.180 43.478 0.00 0.00 0.00 2.32
906 967 3.057315 CAGTGACAACCTTGCCTAAATGG 60.057 47.826 0.00 0.00 39.35 3.16
907 968 2.890945 GTGACAACCTTGCCTAAATGGT 59.109 45.455 0.00 0.00 38.35 3.55
908 969 3.320826 GTGACAACCTTGCCTAAATGGTT 59.679 43.478 0.00 0.00 42.78 3.67
912 973 4.600692 AACCTTGCCTAAATGGTTGTTC 57.399 40.909 0.00 0.00 40.78 3.18
913 974 2.897326 ACCTTGCCTAAATGGTTGTTCC 59.103 45.455 0.00 0.00 38.35 3.62
1059 1131 2.264794 CTGGCCACCACTACGTCC 59.735 66.667 0.00 0.00 0.00 4.79
1356 1429 2.046023 CATCAGCGACAGGGCCAA 60.046 61.111 6.18 0.00 0.00 4.52
1363 1437 1.523154 GCGACAGGGCCAATTCACAA 61.523 55.000 6.18 0.00 0.00 3.33
1413 1502 2.824041 GCATCCGTGGATTGGCGT 60.824 61.111 0.00 0.00 31.62 5.68
1481 1570 3.249189 TTCCTGCTGGGCCTTCGT 61.249 61.111 10.07 0.00 34.39 3.85
1672 1762 1.140252 AGTACCCGTATGTTGGCCATC 59.860 52.381 6.09 6.55 34.86 3.51
2089 2190 7.017850 ACCCAGTGAAATTTAGTAGGAAAGGTA 59.982 37.037 0.00 0.00 0.00 3.08
2163 2267 8.472007 TTTAACATCCCCAAACATATATGGAC 57.528 34.615 16.96 0.00 39.12 4.02
2188 2292 7.990886 ACCCGTTCATGTGTTCTATTATACAAT 59.009 33.333 0.00 0.00 0.00 2.71
2317 2423 7.841915 AAACACAACACCAAATAAGAAAAGG 57.158 32.000 0.00 0.00 0.00 3.11
2472 2590 6.874664 TCGCTATTACACAACACCAAATAAGA 59.125 34.615 0.00 0.00 0.00 2.10
2576 2858 8.600625 CGTACAACATATGCTAGTACAACAAAT 58.399 33.333 22.22 0.00 35.89 2.32
2724 3007 8.540388 TCACTAAATACTTGACTTAGGCATCTT 58.460 33.333 0.00 0.00 0.00 2.40
2731 3014 9.988815 ATACTTGACTTAGGCATCTTTACTATG 57.011 33.333 0.00 0.00 0.00 2.23
2732 3015 7.852263 ACTTGACTTAGGCATCTTTACTATGT 58.148 34.615 0.00 0.00 0.00 2.29
2733 3016 8.978472 ACTTGACTTAGGCATCTTTACTATGTA 58.022 33.333 0.00 0.00 0.00 2.29
2734 3017 9.250624 CTTGACTTAGGCATCTTTACTATGTAC 57.749 37.037 0.00 0.00 0.00 2.90
2735 3018 8.534954 TGACTTAGGCATCTTTACTATGTACT 57.465 34.615 0.00 0.00 0.00 2.73
2736 3019 9.636789 TGACTTAGGCATCTTTACTATGTACTA 57.363 33.333 0.00 0.00 0.00 1.82
2737 3020 9.896263 GACTTAGGCATCTTTACTATGTACTAC 57.104 37.037 0.00 0.00 0.00 2.73
2738 3021 8.858094 ACTTAGGCATCTTTACTATGTACTACC 58.142 37.037 0.00 0.00 0.00 3.18
2739 3022 9.080097 CTTAGGCATCTTTACTATGTACTACCT 57.920 37.037 0.00 0.00 0.00 3.08
2740 3023 7.527568 AGGCATCTTTACTATGTACTACCTC 57.472 40.000 0.00 0.00 0.00 3.85
2741 3024 6.494146 AGGCATCTTTACTATGTACTACCTCC 59.506 42.308 0.00 0.00 0.00 4.30
2742 3025 6.380190 GCATCTTTACTATGTACTACCTCCG 58.620 44.000 0.00 0.00 0.00 4.63
2743 3026 6.016443 GCATCTTTACTATGTACTACCTCCGT 60.016 42.308 0.00 0.00 0.00 4.69
2744 3027 7.469732 GCATCTTTACTATGTACTACCTCCGTT 60.470 40.741 0.00 0.00 0.00 4.44
2745 3028 7.944729 TCTTTACTATGTACTACCTCCGTTT 57.055 36.000 0.00 0.00 0.00 3.60
2746 3029 7.989826 TCTTTACTATGTACTACCTCCGTTTC 58.010 38.462 0.00 0.00 0.00 2.78
2747 3030 7.611467 TCTTTACTATGTACTACCTCCGTTTCA 59.389 37.037 0.00 0.00 0.00 2.69
2748 3031 7.701539 TTACTATGTACTACCTCCGTTTCAA 57.298 36.000 0.00 0.00 0.00 2.69
2749 3032 6.594788 ACTATGTACTACCTCCGTTTCAAA 57.405 37.500 0.00 0.00 0.00 2.69
2750 3033 6.996509 ACTATGTACTACCTCCGTTTCAAAA 58.003 36.000 0.00 0.00 0.00 2.44
2751 3034 7.618137 ACTATGTACTACCTCCGTTTCAAAAT 58.382 34.615 0.00 0.00 0.00 1.82
2752 3035 8.752187 ACTATGTACTACCTCCGTTTCAAAATA 58.248 33.333 0.00 0.00 0.00 1.40
2753 3036 9.245962 CTATGTACTACCTCCGTTTCAAAATAG 57.754 37.037 0.00 0.00 0.00 1.73
2754 3037 7.230849 TGTACTACCTCCGTTTCAAAATAGA 57.769 36.000 0.00 0.00 0.00 1.98
2755 3038 7.844009 TGTACTACCTCCGTTTCAAAATAGAT 58.156 34.615 0.00 0.00 0.00 1.98
2756 3039 7.762615 TGTACTACCTCCGTTTCAAAATAGATG 59.237 37.037 0.00 0.00 0.00 2.90
2757 3040 6.942976 ACTACCTCCGTTTCAAAATAGATGA 58.057 36.000 0.00 0.00 0.00 2.92
2758 3041 6.817140 ACTACCTCCGTTTCAAAATAGATGAC 59.183 38.462 0.00 0.00 0.00 3.06
2759 3042 4.941873 ACCTCCGTTTCAAAATAGATGACC 59.058 41.667 0.00 0.00 0.00 4.02
2760 3043 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
2761 3044 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
2762 3045 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
2763 3046 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
2764 3047 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
2765 3048 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
2766 3049 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
2767 3050 8.293867 CGTTTCAAAATAGATGACCCAACTTTA 58.706 33.333 0.00 0.00 0.00 1.85
2768 3051 9.406828 GTTTCAAAATAGATGACCCAACTTTAC 57.593 33.333 0.00 0.00 0.00 2.01
2769 3052 8.934023 TTCAAAATAGATGACCCAACTTTACT 57.066 30.769 0.00 0.00 0.00 2.24
2776 3059 7.745620 AGATGACCCAACTTTACTAACTTTG 57.254 36.000 0.00 0.00 0.00 2.77
2777 3060 7.287810 AGATGACCCAACTTTACTAACTTTGT 58.712 34.615 0.00 0.00 0.00 2.83
2778 3061 8.434392 AGATGACCCAACTTTACTAACTTTGTA 58.566 33.333 0.00 0.00 0.00 2.41
2779 3062 7.790823 TGACCCAACTTTACTAACTTTGTAC 57.209 36.000 0.00 0.00 0.00 2.90
2780 3063 7.567458 TGACCCAACTTTACTAACTTTGTACT 58.433 34.615 0.00 0.00 0.00 2.73
2781 3064 8.703743 TGACCCAACTTTACTAACTTTGTACTA 58.296 33.333 0.00 0.00 0.00 1.82
2782 3065 9.546428 GACCCAACTTTACTAACTTTGTACTAA 57.454 33.333 0.00 0.00 0.00 2.24
2783 3066 9.904198 ACCCAACTTTACTAACTTTGTACTAAA 57.096 29.630 0.00 0.00 0.00 1.85
2820 3103 9.804758 AGTTAAGTCATCTATTTTAGAACGGAG 57.195 33.333 0.00 0.00 38.50 4.63
2821 3104 9.798994 GTTAAGTCATCTATTTTAGAACGGAGA 57.201 33.333 0.00 0.00 38.50 3.71
2823 3106 7.883391 AGTCATCTATTTTAGAACGGAGAGA 57.117 36.000 0.00 0.00 38.50 3.10
2860 3143 9.542462 TTGTTTCTTGTCATAGTATATAGGTGC 57.458 33.333 0.00 0.00 0.00 5.01
2861 3144 8.700973 TGTTTCTTGTCATAGTATATAGGTGCA 58.299 33.333 0.00 0.00 0.00 4.57
2922 3205 7.280205 CCTCAATGTAGTAAAATGGTCACTACC 59.720 40.741 8.25 0.00 46.98 3.18
3003 3286 2.406616 GCGCCCACCACCTAACATG 61.407 63.158 0.00 0.00 0.00 3.21
3008 3291 2.718563 CCCACCACCTAACATGTTACC 58.281 52.381 14.35 0.00 0.00 2.85
3012 3295 3.751175 CACCACCTAACATGTTACCAGTG 59.249 47.826 21.23 21.23 0.00 3.66
3017 3300 4.766375 CCTAACATGTTACCAGTGGTAGG 58.234 47.826 21.09 14.60 44.32 3.18
3055 3338 1.961180 GACCTATCGCACCTGCCACT 61.961 60.000 0.00 0.00 37.91 4.00
3076 3359 4.903649 ACTGGTAAGTAAGGTACAAGTGGT 59.096 41.667 0.00 0.00 34.95 4.16
3080 3363 6.209391 TGGTAAGTAAGGTACAAGTGGTAGAC 59.791 42.308 0.00 0.00 31.13 2.59
3084 3367 6.073314 AGTAAGGTACAAGTGGTAGACAGAA 58.927 40.000 0.00 0.00 31.13 3.02
3094 3377 1.254954 GTAGACAGAACCGTCCACCT 58.745 55.000 0.00 0.00 36.52 4.00
3103 3386 1.183676 ACCGTCCACCTACCACAGTC 61.184 60.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.091610 TCTCCCTCGATCTCAACTGGAT 60.092 50.000 0.00 0.00 0.00 3.41
1 2 1.285078 TCTCCCTCGATCTCAACTGGA 59.715 52.381 0.00 0.00 0.00 3.86
2 3 1.680735 CTCTCCCTCGATCTCAACTGG 59.319 57.143 0.00 0.00 0.00 4.00
3 4 2.374184 ACTCTCCCTCGATCTCAACTG 58.626 52.381 0.00 0.00 0.00 3.16
4 5 2.818751 ACTCTCCCTCGATCTCAACT 57.181 50.000 0.00 0.00 0.00 3.16
5 6 2.100087 GGAACTCTCCCTCGATCTCAAC 59.900 54.545 0.00 0.00 35.42 3.18
6 7 2.291605 TGGAACTCTCCCTCGATCTCAA 60.292 50.000 0.00 0.00 41.64 3.02
7 8 1.285078 TGGAACTCTCCCTCGATCTCA 59.715 52.381 0.00 0.00 41.64 3.27
8 9 2.060050 TGGAACTCTCCCTCGATCTC 57.940 55.000 0.00 0.00 41.64 2.75
9 10 2.091610 TGATGGAACTCTCCCTCGATCT 60.092 50.000 0.00 0.00 41.64 2.75
10 11 2.295909 CTGATGGAACTCTCCCTCGATC 59.704 54.545 0.00 0.00 41.64 3.69
11 12 2.315176 CTGATGGAACTCTCCCTCGAT 58.685 52.381 0.00 0.00 41.64 3.59
12 13 1.769026 CTGATGGAACTCTCCCTCGA 58.231 55.000 0.00 0.00 41.64 4.04
13 14 0.103937 GCTGATGGAACTCTCCCTCG 59.896 60.000 0.00 0.00 41.64 4.63
14 15 1.134551 GTGCTGATGGAACTCTCCCTC 60.135 57.143 0.00 0.00 41.64 4.30
15 16 0.908198 GTGCTGATGGAACTCTCCCT 59.092 55.000 0.00 0.00 41.64 4.20
16 17 0.460987 CGTGCTGATGGAACTCTCCC 60.461 60.000 0.00 0.00 41.64 4.30
17 18 0.532573 TCGTGCTGATGGAACTCTCC 59.467 55.000 0.00 0.00 42.81 3.71
18 19 1.634702 GTCGTGCTGATGGAACTCTC 58.365 55.000 0.00 0.00 0.00 3.20
19 20 0.109086 CGTCGTGCTGATGGAACTCT 60.109 55.000 0.00 0.00 0.00 3.24
20 21 2.363807 CGTCGTGCTGATGGAACTC 58.636 57.895 0.00 0.00 0.00 3.01
21 22 4.578913 CGTCGTGCTGATGGAACT 57.421 55.556 0.00 0.00 0.00 3.01
37 38 4.735132 ATCACCGTCACCACGCCG 62.735 66.667 0.00 0.00 45.29 6.46
38 39 2.852495 ATCATCACCGTCACCACGCC 62.852 60.000 0.00 0.00 45.29 5.68
39 40 1.447838 ATCATCACCGTCACCACGC 60.448 57.895 0.00 0.00 45.29 5.34
40 41 0.108851 TCATCATCACCGTCACCACG 60.109 55.000 0.00 0.00 46.29 4.94
41 42 2.002586 CTTCATCATCACCGTCACCAC 58.997 52.381 0.00 0.00 0.00 4.16
42 43 1.623311 ACTTCATCATCACCGTCACCA 59.377 47.619 0.00 0.00 0.00 4.17
43 44 2.386661 ACTTCATCATCACCGTCACC 57.613 50.000 0.00 0.00 0.00 4.02
44 45 3.617263 GGTAACTTCATCATCACCGTCAC 59.383 47.826 0.00 0.00 0.00 3.67
45 46 3.674955 CGGTAACTTCATCATCACCGTCA 60.675 47.826 2.91 0.00 42.93 4.35
46 47 2.858344 CGGTAACTTCATCATCACCGTC 59.142 50.000 2.91 0.00 42.93 4.79
47 48 2.418197 CCGGTAACTTCATCATCACCGT 60.418 50.000 9.78 0.00 45.65 4.83
48 49 2.201732 CCGGTAACTTCATCATCACCG 58.798 52.381 4.05 4.05 46.43 4.94
49 50 1.940613 GCCGGTAACTTCATCATCACC 59.059 52.381 1.90 0.00 0.00 4.02
50 51 1.593006 CGCCGGTAACTTCATCATCAC 59.407 52.381 1.90 0.00 0.00 3.06
51 52 1.934589 CGCCGGTAACTTCATCATCA 58.065 50.000 1.90 0.00 0.00 3.07
52 53 0.582005 GCGCCGGTAACTTCATCATC 59.418 55.000 1.90 0.00 0.00 2.92
53 54 0.107897 TGCGCCGGTAACTTCATCAT 60.108 50.000 4.18 0.00 0.00 2.45
54 55 0.739462 CTGCGCCGGTAACTTCATCA 60.739 55.000 4.18 0.00 0.00 3.07
55 56 1.429148 CCTGCGCCGGTAACTTCATC 61.429 60.000 10.08 0.00 0.00 2.92
56 57 1.449601 CCTGCGCCGGTAACTTCAT 60.450 57.895 10.08 0.00 0.00 2.57
57 58 2.047655 CCTGCGCCGGTAACTTCA 60.048 61.111 10.08 0.00 0.00 3.02
58 59 2.818274 CCCTGCGCCGGTAACTTC 60.818 66.667 17.16 0.00 0.00 3.01
62 63 4.770874 GAAGCCCTGCGCCGGTAA 62.771 66.667 17.16 0.00 38.78 2.85
76 77 1.546834 GTCGTAGTGCTTAGGCGAAG 58.453 55.000 2.68 2.68 42.25 3.79
77 78 0.179181 CGTCGTAGTGCTTAGGCGAA 60.179 55.000 0.00 0.00 42.25 4.70
78 79 1.020861 TCGTCGTAGTGCTTAGGCGA 61.021 55.000 0.00 0.70 42.25 5.54
79 80 0.029035 ATCGTCGTAGTGCTTAGGCG 59.971 55.000 0.00 0.00 42.25 5.52
80 81 3.235195 CATATCGTCGTAGTGCTTAGGC 58.765 50.000 0.00 0.00 39.26 3.93
81 82 4.465016 GACATATCGTCGTAGTGCTTAGG 58.535 47.826 0.00 0.00 34.19 2.69
82 83 4.465016 GGACATATCGTCGTAGTGCTTAG 58.535 47.826 0.00 0.00 46.42 2.18
83 84 3.059393 CGGACATATCGTCGTAGTGCTTA 60.059 47.826 0.00 0.00 46.42 3.09
84 85 2.286831 CGGACATATCGTCGTAGTGCTT 60.287 50.000 0.00 0.00 46.42 3.91
85 86 1.263484 CGGACATATCGTCGTAGTGCT 59.737 52.381 0.00 0.00 46.42 4.40
86 87 1.262417 TCGGACATATCGTCGTAGTGC 59.738 52.381 0.00 0.00 46.42 4.40
87 88 2.798847 TCTCGGACATATCGTCGTAGTG 59.201 50.000 0.00 0.00 46.42 2.74
88 89 3.103447 TCTCGGACATATCGTCGTAGT 57.897 47.619 0.00 0.00 46.42 2.73
89 90 3.181519 CCATCTCGGACATATCGTCGTAG 60.182 52.174 0.00 0.00 46.42 3.51
90 91 2.740447 CCATCTCGGACATATCGTCGTA 59.260 50.000 0.00 0.00 46.42 3.43
91 92 1.535896 CCATCTCGGACATATCGTCGT 59.464 52.381 0.00 0.00 46.42 4.34
92 93 1.804748 TCCATCTCGGACATATCGTCG 59.195 52.381 0.00 0.00 46.42 5.12
93 94 3.917329 TTCCATCTCGGACATATCGTC 57.083 47.619 0.00 0.00 46.36 4.20
94 95 4.099573 AGTTTTCCATCTCGGACATATCGT 59.900 41.667 0.00 0.00 46.36 3.73
95 96 4.445718 CAGTTTTCCATCTCGGACATATCG 59.554 45.833 0.00 0.00 46.36 2.92
96 97 5.235186 CACAGTTTTCCATCTCGGACATATC 59.765 44.000 0.00 0.00 46.36 1.63
97 98 5.104941 TCACAGTTTTCCATCTCGGACATAT 60.105 40.000 0.00 0.00 46.36 1.78
98 99 4.221924 TCACAGTTTTCCATCTCGGACATA 59.778 41.667 0.00 0.00 46.36 2.29
99 100 3.007940 TCACAGTTTTCCATCTCGGACAT 59.992 43.478 0.00 0.00 46.36 3.06
100 101 2.367241 TCACAGTTTTCCATCTCGGACA 59.633 45.455 0.00 0.00 46.36 4.02
101 102 3.040147 TCACAGTTTTCCATCTCGGAC 57.960 47.619 0.00 0.00 46.36 4.79
102 103 3.557054 CCTTCACAGTTTTCCATCTCGGA 60.557 47.826 0.00 0.00 44.40 4.55
103 104 2.744202 CCTTCACAGTTTTCCATCTCGG 59.256 50.000 0.00 0.00 0.00 4.63
104 105 2.744202 CCCTTCACAGTTTTCCATCTCG 59.256 50.000 0.00 0.00 0.00 4.04
105 106 3.084786 CCCCTTCACAGTTTTCCATCTC 58.915 50.000 0.00 0.00 0.00 2.75
106 107 2.225117 CCCCCTTCACAGTTTTCCATCT 60.225 50.000 0.00 0.00 0.00 2.90
107 108 2.171003 CCCCCTTCACAGTTTTCCATC 58.829 52.381 0.00 0.00 0.00 3.51
108 109 1.786441 TCCCCCTTCACAGTTTTCCAT 59.214 47.619 0.00 0.00 0.00 3.41
109 110 1.133606 GTCCCCCTTCACAGTTTTCCA 60.134 52.381 0.00 0.00 0.00 3.53
110 111 1.133606 TGTCCCCCTTCACAGTTTTCC 60.134 52.381 0.00 0.00 0.00 3.13
111 112 1.954382 GTGTCCCCCTTCACAGTTTTC 59.046 52.381 0.00 0.00 35.04 2.29
112 113 1.411074 GGTGTCCCCCTTCACAGTTTT 60.411 52.381 0.00 0.00 36.43 2.43
113 114 0.185175 GGTGTCCCCCTTCACAGTTT 59.815 55.000 0.00 0.00 36.43 2.66
114 115 1.844130 GGTGTCCCCCTTCACAGTT 59.156 57.895 0.00 0.00 36.43 3.16
115 116 2.516888 CGGTGTCCCCCTTCACAGT 61.517 63.158 0.00 0.00 36.43 3.55
116 117 1.189524 TACGGTGTCCCCCTTCACAG 61.190 60.000 0.00 0.00 36.43 3.66
117 118 1.152290 TACGGTGTCCCCCTTCACA 60.152 57.895 0.00 0.00 36.43 3.58
118 119 1.294459 GTACGGTGTCCCCCTTCAC 59.706 63.158 0.00 0.00 0.00 3.18
119 120 1.152290 TGTACGGTGTCCCCCTTCA 60.152 57.895 0.00 0.00 0.00 3.02
120 121 1.294459 GTGTACGGTGTCCCCCTTC 59.706 63.158 0.00 0.00 0.00 3.46
121 122 2.576832 CGTGTACGGTGTCCCCCTT 61.577 63.158 0.00 0.00 35.37 3.95
122 123 2.993264 CGTGTACGGTGTCCCCCT 60.993 66.667 0.00 0.00 35.37 4.79
132 133 3.924686 AGTTGATTTCTTAGCCGTGTACG 59.075 43.478 0.00 0.00 39.44 3.67
133 134 5.178809 ACAAGTTGATTTCTTAGCCGTGTAC 59.821 40.000 10.54 0.00 0.00 2.90
134 135 5.178623 CACAAGTTGATTTCTTAGCCGTGTA 59.821 40.000 10.54 0.00 0.00 2.90
135 136 4.024048 CACAAGTTGATTTCTTAGCCGTGT 60.024 41.667 10.54 0.00 0.00 4.49
136 137 4.024048 ACACAAGTTGATTTCTTAGCCGTG 60.024 41.667 10.54 0.00 0.00 4.94
137 138 4.024048 CACACAAGTTGATTTCTTAGCCGT 60.024 41.667 10.54 0.00 0.00 5.68
138 139 4.024048 ACACACAAGTTGATTTCTTAGCCG 60.024 41.667 10.54 0.00 0.00 5.52
139 140 5.239525 AGACACACAAGTTGATTTCTTAGCC 59.760 40.000 10.54 0.00 0.00 3.93
140 141 6.305693 AGACACACAAGTTGATTTCTTAGC 57.694 37.500 10.54 0.00 0.00 3.09
141 142 7.919690 TCAAGACACACAAGTTGATTTCTTAG 58.080 34.615 10.54 6.81 0.00 2.18
142 143 7.768582 TCTCAAGACACACAAGTTGATTTCTTA 59.231 33.333 10.54 0.00 0.00 2.10
143 144 6.599244 TCTCAAGACACACAAGTTGATTTCTT 59.401 34.615 10.54 8.39 0.00 2.52
144 145 6.115446 TCTCAAGACACACAAGTTGATTTCT 58.885 36.000 10.54 2.55 0.00 2.52
145 146 6.363577 TCTCAAGACACACAAGTTGATTTC 57.636 37.500 10.54 0.17 0.00 2.17
146 147 6.732154 CATCTCAAGACACACAAGTTGATTT 58.268 36.000 10.54 0.00 0.00 2.17
147 148 5.278169 GCATCTCAAGACACACAAGTTGATT 60.278 40.000 10.54 0.00 0.00 2.57
148 149 4.214971 GCATCTCAAGACACACAAGTTGAT 59.785 41.667 10.54 0.00 0.00 2.57
149 150 3.561310 GCATCTCAAGACACACAAGTTGA 59.439 43.478 10.54 0.00 0.00 3.18
150 151 3.304257 GGCATCTCAAGACACACAAGTTG 60.304 47.826 0.00 0.00 0.00 3.16
151 152 2.880890 GGCATCTCAAGACACACAAGTT 59.119 45.455 0.00 0.00 0.00 2.66
152 153 2.498167 GGCATCTCAAGACACACAAGT 58.502 47.619 0.00 0.00 0.00 3.16
153 154 1.808945 GGGCATCTCAAGACACACAAG 59.191 52.381 0.00 0.00 0.00 3.16
154 155 1.545428 GGGGCATCTCAAGACACACAA 60.545 52.381 0.00 0.00 0.00 3.33
155 156 0.036732 GGGGCATCTCAAGACACACA 59.963 55.000 0.00 0.00 0.00 3.72
156 157 0.678048 GGGGGCATCTCAAGACACAC 60.678 60.000 0.00 0.00 0.00 3.82
157 158 0.842030 AGGGGGCATCTCAAGACACA 60.842 55.000 0.00 0.00 0.00 3.72
158 159 0.329596 AAGGGGGCATCTCAAGACAC 59.670 55.000 0.00 0.00 0.00 3.67
159 160 0.329261 CAAGGGGGCATCTCAAGACA 59.671 55.000 0.00 0.00 0.00 3.41
160 161 0.620556 TCAAGGGGGCATCTCAAGAC 59.379 55.000 0.00 0.00 0.00 3.01
161 162 0.620556 GTCAAGGGGGCATCTCAAGA 59.379 55.000 0.00 0.00 0.00 3.02
162 163 0.394899 GGTCAAGGGGGCATCTCAAG 60.395 60.000 0.00 0.00 0.00 3.02
163 164 1.139498 TGGTCAAGGGGGCATCTCAA 61.139 55.000 0.00 0.00 0.00 3.02
164 165 1.541118 TGGTCAAGGGGGCATCTCA 60.541 57.895 0.00 0.00 0.00 3.27
165 166 1.077429 GTGGTCAAGGGGGCATCTC 60.077 63.158 0.00 0.00 0.00 2.75
166 167 2.971598 CGTGGTCAAGGGGGCATCT 61.972 63.158 0.00 0.00 0.00 2.90
167 168 1.906105 TACGTGGTCAAGGGGGCATC 61.906 60.000 0.00 0.00 0.00 3.91
168 169 1.279025 ATACGTGGTCAAGGGGGCAT 61.279 55.000 0.00 0.00 0.00 4.40
169 170 0.618107 TATACGTGGTCAAGGGGGCA 60.618 55.000 0.00 0.00 0.00 5.36
170 171 0.763035 ATATACGTGGTCAAGGGGGC 59.237 55.000 0.00 0.00 0.00 5.80
171 172 4.693042 TTTATATACGTGGTCAAGGGGG 57.307 45.455 0.00 0.00 0.00 5.40
172 173 5.860611 TCATTTATATACGTGGTCAAGGGG 58.139 41.667 0.00 0.00 0.00 4.79
173 174 5.932303 CCTCATTTATATACGTGGTCAAGGG 59.068 44.000 0.00 0.00 0.00 3.95
174 175 5.932303 CCCTCATTTATATACGTGGTCAAGG 59.068 44.000 0.00 0.00 0.00 3.61
175 176 6.755206 TCCCTCATTTATATACGTGGTCAAG 58.245 40.000 0.00 0.00 0.00 3.02
176 177 6.551975 TCTCCCTCATTTATATACGTGGTCAA 59.448 38.462 0.00 0.00 0.00 3.18
177 178 6.072649 TCTCCCTCATTTATATACGTGGTCA 58.927 40.000 0.00 0.00 0.00 4.02
178 179 6.585695 TCTCCCTCATTTATATACGTGGTC 57.414 41.667 0.00 0.00 0.00 4.02
179 180 6.014499 CCTTCTCCCTCATTTATATACGTGGT 60.014 42.308 0.00 0.00 0.00 4.16
180 181 6.210784 TCCTTCTCCCTCATTTATATACGTGG 59.789 42.308 0.00 0.00 0.00 4.94
181 182 7.228314 TCCTTCTCCCTCATTTATATACGTG 57.772 40.000 0.00 0.00 0.00 4.49
182 183 6.437793 CCTCCTTCTCCCTCATTTATATACGT 59.562 42.308 0.00 0.00 0.00 3.57
183 184 6.663953 TCCTCCTTCTCCCTCATTTATATACG 59.336 42.308 0.00 0.00 0.00 3.06
184 185 7.125053 CCTCCTCCTTCTCCCTCATTTATATAC 59.875 44.444 0.00 0.00 0.00 1.47
185 186 7.192628 CCTCCTCCTTCTCCCTCATTTATATA 58.807 42.308 0.00 0.00 0.00 0.86
186 187 6.028780 CCTCCTCCTTCTCCCTCATTTATAT 58.971 44.000 0.00 0.00 0.00 0.86
187 188 5.407049 CCTCCTCCTTCTCCCTCATTTATA 58.593 45.833 0.00 0.00 0.00 0.98
188 189 4.238669 CCTCCTCCTTCTCCCTCATTTAT 58.761 47.826 0.00 0.00 0.00 1.40
189 190 3.658725 CCTCCTCCTTCTCCCTCATTTA 58.341 50.000 0.00 0.00 0.00 1.40
190 191 2.486716 CCTCCTCCTTCTCCCTCATTT 58.513 52.381 0.00 0.00 0.00 2.32
191 192 1.974197 GCCTCCTCCTTCTCCCTCATT 60.974 57.143 0.00 0.00 0.00 2.57
192 193 0.399806 GCCTCCTCCTTCTCCCTCAT 60.400 60.000 0.00 0.00 0.00 2.90
193 194 1.002274 GCCTCCTCCTTCTCCCTCA 59.998 63.158 0.00 0.00 0.00 3.86
194 195 1.764454 GGCCTCCTCCTTCTCCCTC 60.764 68.421 0.00 0.00 0.00 4.30
195 196 2.370633 GGCCTCCTCCTTCTCCCT 59.629 66.667 0.00 0.00 0.00 4.20
196 197 3.157949 CGGCCTCCTCCTTCTCCC 61.158 72.222 0.00 0.00 0.00 4.30
197 198 3.157949 CCGGCCTCCTCCTTCTCC 61.158 72.222 0.00 0.00 0.00 3.71
198 199 3.855853 GCCGGCCTCCTCCTTCTC 61.856 72.222 18.11 0.00 0.00 2.87
215 216 3.637803 TATAGGTGCGCCCCTCCTAGG 62.638 61.905 16.98 0.82 41.57 3.02
216 217 0.251653 TATAGGTGCGCCCCTCCTAG 60.252 60.000 16.98 0.00 41.57 3.02
217 218 0.251653 CTATAGGTGCGCCCCTCCTA 60.252 60.000 16.98 16.36 42.25 2.94
218 219 1.534235 CTATAGGTGCGCCCCTCCT 60.534 63.158 16.98 14.66 40.43 3.69
219 220 2.584391 CCTATAGGTGCGCCCCTCC 61.584 68.421 16.98 7.33 35.97 4.30
220 221 2.584391 CCCTATAGGTGCGCCCCTC 61.584 68.421 16.98 0.00 35.97 4.30
221 222 2.526873 CCCTATAGGTGCGCCCCT 60.527 66.667 17.70 17.70 38.70 4.79
222 223 3.637273 CCCCTATAGGTGCGCCCC 61.637 72.222 17.72 1.21 34.57 5.80
223 224 3.637273 CCCCCTATAGGTGCGCCC 61.637 72.222 17.72 5.76 34.57 6.13
224 225 2.525877 TCCCCCTATAGGTGCGCC 60.526 66.667 17.72 8.71 0.00 6.53
225 226 1.817911 GACTCCCCCTATAGGTGCGC 61.818 65.000 17.72 0.00 0.00 6.09
226 227 1.186267 GGACTCCCCCTATAGGTGCG 61.186 65.000 17.72 6.07 0.00 5.34
227 228 0.105142 TGGACTCCCCCTATAGGTGC 60.105 60.000 17.72 4.57 0.00 5.01
228 229 2.047830 GTTGGACTCCCCCTATAGGTG 58.952 57.143 17.72 6.12 0.00 4.00
229 230 1.945317 AGTTGGACTCCCCCTATAGGT 59.055 52.381 17.72 0.00 0.00 3.08
230 231 2.797285 AGTTGGACTCCCCCTATAGG 57.203 55.000 12.27 12.27 0.00 2.57
231 232 3.401683 TCCTAGTTGGACTCCCCCTATAG 59.598 52.174 0.00 0.00 40.56 1.31
232 233 3.419974 TCCTAGTTGGACTCCCCCTATA 58.580 50.000 0.00 0.00 40.56 1.31
233 234 2.233178 TCCTAGTTGGACTCCCCCTAT 58.767 52.381 0.00 0.00 40.56 2.57
234 235 1.702699 TCCTAGTTGGACTCCCCCTA 58.297 55.000 0.00 0.00 40.56 3.53
235 236 2.511560 TCCTAGTTGGACTCCCCCT 58.488 57.895 0.00 0.00 40.56 4.79
252 253 5.454897 GGGACTACAACTAGGATTGGGAATC 60.455 48.000 0.00 0.00 37.17 2.52
253 254 4.412528 GGGACTACAACTAGGATTGGGAAT 59.587 45.833 0.00 0.00 33.63 3.01
254 255 3.778629 GGGACTACAACTAGGATTGGGAA 59.221 47.826 0.00 0.00 33.63 3.97
255 256 3.013648 AGGGACTACAACTAGGATTGGGA 59.986 47.826 0.00 0.00 36.02 4.37
256 257 3.385115 AGGGACTACAACTAGGATTGGG 58.615 50.000 0.00 0.00 36.02 4.12
257 258 5.429130 GAAAGGGACTACAACTAGGATTGG 58.571 45.833 0.00 0.00 38.49 3.16
258 259 5.189934 AGGAAAGGGACTACAACTAGGATTG 59.810 44.000 0.00 0.00 38.49 2.67
259 260 5.351405 AGGAAAGGGACTACAACTAGGATT 58.649 41.667 0.00 0.00 38.49 3.01
260 261 4.961585 AGGAAAGGGACTACAACTAGGAT 58.038 43.478 0.00 0.00 38.49 3.24
261 262 4.415224 AGGAAAGGGACTACAACTAGGA 57.585 45.455 0.00 0.00 38.49 2.94
262 263 5.500546 AAAGGAAAGGGACTACAACTAGG 57.499 43.478 0.00 0.00 38.49 3.02
263 264 5.938710 GGAAAAGGAAAGGGACTACAACTAG 59.061 44.000 0.00 0.00 38.49 2.57
264 265 5.370289 TGGAAAAGGAAAGGGACTACAACTA 59.630 40.000 0.00 0.00 38.49 2.24
265 266 4.167307 TGGAAAAGGAAAGGGACTACAACT 59.833 41.667 0.00 0.00 38.49 3.16
266 267 4.466827 TGGAAAAGGAAAGGGACTACAAC 58.533 43.478 0.00 0.00 38.49 3.32
267 268 4.799715 TGGAAAAGGAAAGGGACTACAA 57.200 40.909 0.00 0.00 38.49 2.41
268 269 4.414182 TCTTGGAAAAGGAAAGGGACTACA 59.586 41.667 0.00 0.00 38.49 2.74
269 270 4.981812 TCTTGGAAAAGGAAAGGGACTAC 58.018 43.478 0.00 0.00 38.49 2.73
270 271 4.042934 CCTCTTGGAAAAGGAAAGGGACTA 59.957 45.833 0.00 0.00 33.19 2.59
271 272 3.181428 CCTCTTGGAAAAGGAAAGGGACT 60.181 47.826 0.00 0.00 35.43 3.85
272 273 3.157881 CCTCTTGGAAAAGGAAAGGGAC 58.842 50.000 0.00 0.00 34.35 4.46
273 274 2.110011 CCCTCTTGGAAAAGGAAAGGGA 59.890 50.000 0.00 0.00 43.93 4.20
274 275 2.529632 CCCTCTTGGAAAAGGAAAGGG 58.470 52.381 0.00 0.00 36.32 3.95
275 276 2.529632 CCCCTCTTGGAAAAGGAAAGG 58.470 52.381 0.00 0.00 34.35 3.11
276 277 2.110011 TCCCCCTCTTGGAAAAGGAAAG 59.890 50.000 0.00 0.00 34.35 2.62
277 278 2.110011 CTCCCCCTCTTGGAAAAGGAAA 59.890 50.000 0.00 0.00 34.35 3.13
278 279 1.710809 CTCCCCCTCTTGGAAAAGGAA 59.289 52.381 0.00 0.00 34.35 3.36
279 280 1.132201 TCTCCCCCTCTTGGAAAAGGA 60.132 52.381 0.00 0.00 34.35 3.36
280 281 1.283321 CTCTCCCCCTCTTGGAAAAGG 59.717 57.143 0.00 0.00 35.39 3.11
281 282 1.283321 CCTCTCCCCCTCTTGGAAAAG 59.717 57.143 0.00 0.00 35.39 2.27
282 283 1.132201 TCCTCTCCCCCTCTTGGAAAA 60.132 52.381 0.00 0.00 35.39 2.29
283 284 0.496382 TCCTCTCCCCCTCTTGGAAA 59.504 55.000 0.00 0.00 35.39 3.13
284 285 0.496382 TTCCTCTCCCCCTCTTGGAA 59.504 55.000 0.00 0.00 35.39 3.53
285 286 0.496382 TTTCCTCTCCCCCTCTTGGA 59.504 55.000 0.00 0.00 35.39 3.53
286 287 0.915364 CTTTCCTCTCCCCCTCTTGG 59.085 60.000 0.00 0.00 0.00 3.61
287 288 0.915364 CCTTTCCTCTCCCCCTCTTG 59.085 60.000 0.00 0.00 0.00 3.02
288 289 0.800239 TCCTTTCCTCTCCCCCTCTT 59.200 55.000 0.00 0.00 0.00 2.85
289 290 0.341609 CTCCTTTCCTCTCCCCCTCT 59.658 60.000 0.00 0.00 0.00 3.69
290 291 0.043485 ACTCCTTTCCTCTCCCCCTC 59.957 60.000 0.00 0.00 0.00 4.30
291 292 1.292546 CTACTCCTTTCCTCTCCCCCT 59.707 57.143 0.00 0.00 0.00 4.79
292 293 1.693083 CCTACTCCTTTCCTCTCCCCC 60.693 61.905 0.00 0.00 0.00 5.40
293 294 1.291335 TCCTACTCCTTTCCTCTCCCC 59.709 57.143 0.00 0.00 0.00 4.81
294 295 2.245287 TCTCCTACTCCTTTCCTCTCCC 59.755 54.545 0.00 0.00 0.00 4.30
295 296 3.562182 CTCTCCTACTCCTTTCCTCTCC 58.438 54.545 0.00 0.00 0.00 3.71
296 297 3.562182 CCTCTCCTACTCCTTTCCTCTC 58.438 54.545 0.00 0.00 0.00 3.20
297 298 2.246327 CCCTCTCCTACTCCTTTCCTCT 59.754 54.545 0.00 0.00 0.00 3.69
298 299 2.245287 TCCCTCTCCTACTCCTTTCCTC 59.755 54.545 0.00 0.00 0.00 3.71
299 300 2.246327 CTCCCTCTCCTACTCCTTTCCT 59.754 54.545 0.00 0.00 0.00 3.36
300 301 2.245287 TCTCCCTCTCCTACTCCTTTCC 59.755 54.545 0.00 0.00 0.00 3.13
301 302 3.673543 TCTCCCTCTCCTACTCCTTTC 57.326 52.381 0.00 0.00 0.00 2.62
302 303 3.310288 CCTTCTCCCTCTCCTACTCCTTT 60.310 52.174 0.00 0.00 0.00 3.11
303 304 2.246327 CCTTCTCCCTCTCCTACTCCTT 59.754 54.545 0.00 0.00 0.00 3.36
304 305 1.856920 CCTTCTCCCTCTCCTACTCCT 59.143 57.143 0.00 0.00 0.00 3.69
305 306 1.854280 TCCTTCTCCCTCTCCTACTCC 59.146 57.143 0.00 0.00 0.00 3.85
306 307 3.673543 TTCCTTCTCCCTCTCCTACTC 57.326 52.381 0.00 0.00 0.00 2.59
307 308 3.598782 TCTTTCCTTCTCCCTCTCCTACT 59.401 47.826 0.00 0.00 0.00 2.57
308 309 3.958147 CTCTTTCCTTCTCCCTCTCCTAC 59.042 52.174 0.00 0.00 0.00 3.18
309 310 3.859248 TCTCTTTCCTTCTCCCTCTCCTA 59.141 47.826 0.00 0.00 0.00 2.94
310 311 2.657459 TCTCTTTCCTTCTCCCTCTCCT 59.343 50.000 0.00 0.00 0.00 3.69
311 312 3.031013 CTCTCTTTCCTTCTCCCTCTCC 58.969 54.545 0.00 0.00 0.00 3.71
312 313 3.031013 CCTCTCTTTCCTTCTCCCTCTC 58.969 54.545 0.00 0.00 0.00 3.20
313 314 2.292851 CCCTCTCTTTCCTTCTCCCTCT 60.293 54.545 0.00 0.00 0.00 3.69
314 315 2.115427 CCCTCTCTTTCCTTCTCCCTC 58.885 57.143 0.00 0.00 0.00 4.30
315 316 1.274126 CCCCTCTCTTTCCTTCTCCCT 60.274 57.143 0.00 0.00 0.00 4.20
316 317 1.208706 CCCCTCTCTTTCCTTCTCCC 58.791 60.000 0.00 0.00 0.00 4.30
317 318 1.208706 CCCCCTCTCTTTCCTTCTCC 58.791 60.000 0.00 0.00 0.00 3.71
342 343 2.150014 TAAACCTTGAGGCAGGGGGC 62.150 60.000 0.00 0.00 38.42 5.80
343 344 0.631212 ATAAACCTTGAGGCAGGGGG 59.369 55.000 0.00 0.00 38.42 5.40
344 345 2.532250 AATAAACCTTGAGGCAGGGG 57.468 50.000 0.00 0.00 38.42 4.79
345 346 4.618227 CGAAAAATAAACCTTGAGGCAGGG 60.618 45.833 0.00 0.00 38.42 4.45
346 347 4.485163 CGAAAAATAAACCTTGAGGCAGG 58.515 43.478 0.00 0.00 39.32 4.85
347 348 3.920412 GCGAAAAATAAACCTTGAGGCAG 59.080 43.478 0.00 0.00 39.32 4.85
348 349 3.572255 AGCGAAAAATAAACCTTGAGGCA 59.428 39.130 0.00 0.00 39.32 4.75
349 350 4.174411 AGCGAAAAATAAACCTTGAGGC 57.826 40.909 0.00 0.00 39.32 4.70
350 351 7.477144 AAAAAGCGAAAAATAAACCTTGAGG 57.523 32.000 0.00 0.00 42.17 3.86
371 372 1.970092 ACGTCATCAACCCGGAAAAA 58.030 45.000 0.73 0.00 0.00 1.94
372 373 1.874872 GAACGTCATCAACCCGGAAAA 59.125 47.619 0.73 0.00 0.00 2.29
373 374 1.515081 GAACGTCATCAACCCGGAAA 58.485 50.000 0.73 0.00 0.00 3.13
374 375 0.668096 CGAACGTCATCAACCCGGAA 60.668 55.000 0.73 0.00 0.00 4.30
375 376 1.080366 CGAACGTCATCAACCCGGA 60.080 57.895 0.73 0.00 0.00 5.14
376 377 2.098233 CCGAACGTCATCAACCCGG 61.098 63.158 0.00 0.00 0.00 5.73
377 378 2.736682 GCCGAACGTCATCAACCCG 61.737 63.158 0.00 0.00 0.00 5.28
378 379 1.375523 AGCCGAACGTCATCAACCC 60.376 57.895 0.00 0.00 0.00 4.11
379 380 1.787847 CAGCCGAACGTCATCAACC 59.212 57.895 0.00 0.00 0.00 3.77
380 381 1.132640 GCAGCCGAACGTCATCAAC 59.867 57.895 0.00 0.00 0.00 3.18
381 382 1.005037 AGCAGCCGAACGTCATCAA 60.005 52.632 0.00 0.00 0.00 2.57
382 383 1.737735 CAGCAGCCGAACGTCATCA 60.738 57.895 0.00 0.00 0.00 3.07
383 384 2.456119 CCAGCAGCCGAACGTCATC 61.456 63.158 0.00 0.00 0.00 2.92
384 385 2.244117 ATCCAGCAGCCGAACGTCAT 62.244 55.000 0.00 0.00 0.00 3.06
385 386 2.449031 AATCCAGCAGCCGAACGTCA 62.449 55.000 0.00 0.00 0.00 4.35
386 387 1.298859 AAATCCAGCAGCCGAACGTC 61.299 55.000 0.00 0.00 0.00 4.34
387 388 0.889186 AAAATCCAGCAGCCGAACGT 60.889 50.000 0.00 0.00 0.00 3.99
388 389 0.454957 CAAAATCCAGCAGCCGAACG 60.455 55.000 0.00 0.00 0.00 3.95
389 390 0.733909 GCAAAATCCAGCAGCCGAAC 60.734 55.000 0.00 0.00 0.00 3.95
390 391 1.177895 TGCAAAATCCAGCAGCCGAA 61.178 50.000 0.00 0.00 35.51 4.30
391 392 1.603171 TGCAAAATCCAGCAGCCGA 60.603 52.632 0.00 0.00 35.51 5.54
392 393 1.444895 GTGCAAAATCCAGCAGCCG 60.445 57.895 0.00 0.00 42.14 5.52
393 394 1.176527 TAGTGCAAAATCCAGCAGCC 58.823 50.000 0.00 0.00 42.14 4.85
394 395 3.515330 AATAGTGCAAAATCCAGCAGC 57.485 42.857 0.00 0.00 42.14 5.25
405 406 9.460019 TGCAGCCATATATTATTAATAGTGCAA 57.540 29.630 0.96 0.00 0.00 4.08
406 407 9.631257 ATGCAGCCATATATTATTAATAGTGCA 57.369 29.630 0.96 13.14 0.00 4.57
407 408 9.888878 CATGCAGCCATATATTATTAATAGTGC 57.111 33.333 0.96 5.16 0.00 4.40
414 415 9.511272 GGATGATCATGCAGCCATATATTATTA 57.489 33.333 21.09 0.00 43.64 0.98
415 416 8.225416 AGGATGATCATGCAGCCATATATTATT 58.775 33.333 26.58 0.40 46.51 1.40
416 417 7.665974 CAGGATGATCATGCAGCCATATATTAT 59.334 37.037 26.58 0.82 46.51 1.28
417 418 6.996282 CAGGATGATCATGCAGCCATATATTA 59.004 38.462 26.58 0.00 46.51 0.98
418 419 5.828328 CAGGATGATCATGCAGCCATATATT 59.172 40.000 26.58 1.52 46.51 1.28
419 420 5.132144 TCAGGATGATCATGCAGCCATATAT 59.868 40.000 26.58 2.24 46.51 0.86
420 421 4.472108 TCAGGATGATCATGCAGCCATATA 59.528 41.667 26.58 1.60 46.51 0.86
421 422 3.265995 TCAGGATGATCATGCAGCCATAT 59.734 43.478 26.58 3.67 46.51 1.78
422 423 2.640826 TCAGGATGATCATGCAGCCATA 59.359 45.455 26.58 2.64 46.51 2.74
423 424 1.423921 TCAGGATGATCATGCAGCCAT 59.576 47.619 26.58 5.10 46.51 4.40
424 425 0.841289 TCAGGATGATCATGCAGCCA 59.159 50.000 26.58 6.64 46.51 4.75
425 426 3.719816 TCAGGATGATCATGCAGCC 57.280 52.632 26.58 15.22 42.56 4.85
436 437 1.597302 CGGCCTCTGCATCAGGATG 60.597 63.158 14.75 4.91 41.60 3.51
437 438 2.815945 CCGGCCTCTGCATCAGGAT 61.816 63.158 14.75 0.00 40.13 3.24
438 439 3.473647 CCGGCCTCTGCATCAGGA 61.474 66.667 14.75 0.00 40.13 3.86
439 440 4.559063 CCCGGCCTCTGCATCAGG 62.559 72.222 0.00 7.38 40.13 3.86
440 441 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
443 444 3.792325 TATCCCCCGGCCTCTGCAT 62.792 63.158 0.00 0.00 40.13 3.96
444 445 3.792325 ATATCCCCCGGCCTCTGCA 62.792 63.158 0.00 0.00 40.13 4.41
445 446 2.930562 ATATCCCCCGGCCTCTGC 60.931 66.667 0.00 0.00 0.00 4.26
446 447 2.294078 GGATATCCCCCGGCCTCTG 61.294 68.421 11.02 0.00 0.00 3.35
447 448 2.122954 GGATATCCCCCGGCCTCT 59.877 66.667 11.02 0.00 0.00 3.69
448 449 1.990614 GAGGATATCCCCCGGCCTC 60.991 68.421 18.56 6.31 38.45 4.70
449 450 2.122954 GAGGATATCCCCCGGCCT 59.877 66.667 18.56 0.00 36.42 5.19
450 451 3.009714 GGAGGATATCCCCCGGCC 61.010 72.222 18.56 8.54 43.01 6.13
491 492 8.027189 CCATTGATTTCTATTGACCTGCATATG 58.973 37.037 0.00 0.00 0.00 1.78
628 635 5.865552 AGAAGCAAATGATTCACCAAATTCG 59.134 36.000 13.25 0.00 42.42 3.34
633 640 6.347696 ACAAAAGAAGCAAATGATTCACCAA 58.652 32.000 13.25 0.00 42.42 3.67
637 644 8.489990 TTGAAACAAAAGAAGCAAATGATTCA 57.510 26.923 13.25 0.00 42.42 2.57
658 665 9.753674 ACCTGGAAAATCTGTCTATTTATTGAA 57.246 29.630 0.00 0.00 0.00 2.69
659 666 9.177608 CACCTGGAAAATCTGTCTATTTATTGA 57.822 33.333 0.00 0.00 0.00 2.57
660 667 8.960591 ACACCTGGAAAATCTGTCTATTTATTG 58.039 33.333 0.00 0.00 0.00 1.90
678 700 0.538746 TCGTGCTACTCACACCTGGA 60.539 55.000 0.00 0.00 45.92 3.86
680 702 1.269723 TCTTCGTGCTACTCACACCTG 59.730 52.381 0.00 0.00 45.92 4.00
726 748 1.308069 TGCAGCCTTCGAGAAATGGC 61.308 55.000 7.72 7.72 45.21 4.40
751 773 4.152284 AGGGAATAAAGAACCATCGACC 57.848 45.455 0.00 0.00 0.00 4.79
754 776 4.982916 CGTCTAGGGAATAAAGAACCATCG 59.017 45.833 0.00 0.00 0.00 3.84
787 809 9.126151 TCATATAGATCTCAATCGATCCTAACC 57.874 37.037 0.00 0.00 40.50 2.85
833 857 6.473455 GGATAGTAATTGTGCAAATCTTGTGC 59.527 38.462 0.00 0.00 42.55 4.57
870 931 4.926860 TGTCACTGAAAATATCGTGCTG 57.073 40.909 0.00 0.00 34.61 4.41
871 932 4.154195 GGTTGTCACTGAAAATATCGTGCT 59.846 41.667 0.00 0.00 34.61 4.40
873 934 5.862924 AGGTTGTCACTGAAAATATCGTG 57.137 39.130 0.00 0.00 35.37 4.35
874 935 5.334879 GCAAGGTTGTCACTGAAAATATCGT 60.335 40.000 0.00 0.00 0.00 3.73
876 937 5.183904 AGGCAAGGTTGTCACTGAAAATATC 59.816 40.000 0.00 0.00 34.61 1.63
877 938 5.079643 AGGCAAGGTTGTCACTGAAAATAT 58.920 37.500 0.00 0.00 34.61 1.28
878 939 4.469657 AGGCAAGGTTGTCACTGAAAATA 58.530 39.130 0.00 0.00 34.61 1.40
879 940 3.299503 AGGCAAGGTTGTCACTGAAAAT 58.700 40.909 0.00 0.00 34.61 1.82
880 941 2.733956 AGGCAAGGTTGTCACTGAAAA 58.266 42.857 0.00 0.00 34.61 2.29
881 942 2.435372 AGGCAAGGTTGTCACTGAAA 57.565 45.000 0.00 0.00 34.61 2.69
882 943 3.569194 TTAGGCAAGGTTGTCACTGAA 57.431 42.857 0.00 0.00 34.61 3.02
883 944 3.569194 TTTAGGCAAGGTTGTCACTGA 57.431 42.857 0.00 0.00 34.61 3.41
884 945 3.057315 CCATTTAGGCAAGGTTGTCACTG 60.057 47.826 0.00 0.00 34.61 3.66
885 946 3.157087 CCATTTAGGCAAGGTTGTCACT 58.843 45.455 0.00 0.00 34.61 3.41
886 947 2.890945 ACCATTTAGGCAAGGTTGTCAC 59.109 45.455 0.00 0.00 43.14 3.67
887 948 3.237268 ACCATTTAGGCAAGGTTGTCA 57.763 42.857 0.00 0.00 43.14 3.58
891 952 3.323691 GGAACAACCATTTAGGCAAGGTT 59.676 43.478 0.00 0.00 44.74 3.50
892 953 2.897326 GGAACAACCATTTAGGCAAGGT 59.103 45.455 0.00 0.00 43.14 3.50
893 954 2.896685 TGGAACAACCATTTAGGCAAGG 59.103 45.455 0.00 0.00 44.64 3.61
904 965 1.965643 ACGCTAGTAGTGGAACAACCA 59.034 47.619 15.01 0.00 44.16 3.67
905 966 2.738013 ACGCTAGTAGTGGAACAACC 57.262 50.000 15.01 0.00 44.16 3.77
906 967 3.166657 CGTACGCTAGTAGTGGAACAAC 58.833 50.000 15.01 4.55 44.16 3.32
907 968 2.813754 ACGTACGCTAGTAGTGGAACAA 59.186 45.455 16.72 0.00 44.16 2.83
908 969 2.416547 GACGTACGCTAGTAGTGGAACA 59.583 50.000 16.72 0.00 41.43 3.18
909 970 2.223135 GGACGTACGCTAGTAGTGGAAC 60.223 54.545 16.72 11.01 32.77 3.62
910 971 2.009774 GGACGTACGCTAGTAGTGGAA 58.990 52.381 16.72 0.16 32.77 3.53
911 972 1.066215 TGGACGTACGCTAGTAGTGGA 60.066 52.381 16.72 3.33 32.77 4.02
912 973 1.063174 GTGGACGTACGCTAGTAGTGG 59.937 57.143 16.72 2.59 32.77 4.00
913 974 1.267235 CGTGGACGTACGCTAGTAGTG 60.267 57.143 16.72 9.22 37.24 2.74
914 975 1.002366 CGTGGACGTACGCTAGTAGT 58.998 55.000 16.72 0.00 37.24 2.73
915 976 1.280982 TCGTGGACGTACGCTAGTAG 58.719 55.000 16.72 3.01 43.40 2.57
916 977 1.594397 CATCGTGGACGTACGCTAGTA 59.406 52.381 16.72 0.00 43.40 1.82
1026 1094 2.672996 AGCACAATGGCCACGACC 60.673 61.111 8.16 0.00 0.00 4.79
1356 1429 3.670359 CGTTGATGGCGTCATTTGTGAAT 60.670 43.478 10.74 0.00 36.54 2.57
1363 1437 2.406616 GGGCGTTGATGGCGTCATT 61.407 57.895 10.74 0.00 36.54 2.57
1672 1762 2.513204 CGAGCAGTGGCCATCCTG 60.513 66.667 17.08 17.08 42.56 3.86
1749 1840 0.322098 CCAACGCCACCACCTCATTA 60.322 55.000 0.00 0.00 0.00 1.90
2007 2106 2.180946 TGGGCTGACCTCTCACATAT 57.819 50.000 0.00 0.00 41.11 1.78
2008 2107 1.833630 CTTGGGCTGACCTCTCACATA 59.166 52.381 0.00 0.00 41.11 2.29
2010 2109 1.483595 CCTTGGGCTGACCTCTCACA 61.484 60.000 0.00 0.00 41.11 3.58
2163 2267 7.780008 TTGTATAATAGAACACATGAACGGG 57.220 36.000 0.00 0.00 0.00 5.28
2188 2292 9.742144 TTCCACAAGGTAAAGTAATATTGCTTA 57.258 29.630 17.68 5.56 32.69 3.09
2209 2314 6.412362 ACTATCATAGACATCACCTTCCAC 57.588 41.667 0.00 0.00 0.00 4.02
2285 2391 8.508800 TTATTTGGTGTTGTGTTTTAATAGCG 57.491 30.769 0.00 0.00 0.00 4.26
2714 2997 9.075678 GAGGTAGTACATAGTAAAGATGCCTAA 57.924 37.037 2.06 0.00 0.00 2.69
2720 3003 8.530804 AAACGGAGGTAGTACATAGTAAAGAT 57.469 34.615 2.06 0.00 0.00 2.40
2724 3007 7.701539 TTGAAACGGAGGTAGTACATAGTAA 57.298 36.000 2.06 0.00 0.00 2.24
2731 3014 7.977853 TCATCTATTTTGAAACGGAGGTAGTAC 59.022 37.037 0.00 0.00 0.00 2.73
2732 3015 7.977853 GTCATCTATTTTGAAACGGAGGTAGTA 59.022 37.037 0.00 0.00 0.00 1.82
2733 3016 6.817140 GTCATCTATTTTGAAACGGAGGTAGT 59.183 38.462 0.00 0.00 0.00 2.73
2734 3017 6.258068 GGTCATCTATTTTGAAACGGAGGTAG 59.742 42.308 0.00 0.00 0.00 3.18
2735 3018 6.110707 GGTCATCTATTTTGAAACGGAGGTA 58.889 40.000 0.00 0.00 0.00 3.08
2736 3019 4.941873 GGTCATCTATTTTGAAACGGAGGT 59.058 41.667 0.00 0.00 0.00 3.85
2737 3020 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
2738 3021 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
2739 3022 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
2740 3023 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
2741 3024 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
2742 3025 9.406828 GTAAAGTTGGGTCATCTATTTTGAAAC 57.593 33.333 0.00 0.00 0.00 2.78
2743 3026 9.362151 AGTAAAGTTGGGTCATCTATTTTGAAA 57.638 29.630 0.00 0.00 0.00 2.69
2744 3027 8.934023 AGTAAAGTTGGGTCATCTATTTTGAA 57.066 30.769 0.00 0.00 0.00 2.69
2750 3033 9.449719 CAAAGTTAGTAAAGTTGGGTCATCTAT 57.550 33.333 0.00 0.00 0.00 1.98
2751 3034 8.434392 ACAAAGTTAGTAAAGTTGGGTCATCTA 58.566 33.333 10.16 0.00 0.00 1.98
2752 3035 7.287810 ACAAAGTTAGTAAAGTTGGGTCATCT 58.712 34.615 10.16 0.00 0.00 2.90
2753 3036 7.506328 ACAAAGTTAGTAAAGTTGGGTCATC 57.494 36.000 10.16 0.00 0.00 2.92
2754 3037 8.215736 AGTACAAAGTTAGTAAAGTTGGGTCAT 58.784 33.333 10.16 0.00 0.00 3.06
2755 3038 7.567458 AGTACAAAGTTAGTAAAGTTGGGTCA 58.433 34.615 10.16 0.00 0.00 4.02
2756 3039 9.546428 TTAGTACAAAGTTAGTAAAGTTGGGTC 57.454 33.333 10.16 2.98 0.00 4.46
2757 3040 9.904198 TTTAGTACAAAGTTAGTAAAGTTGGGT 57.096 29.630 10.16 2.44 0.00 4.51
2794 3077 9.804758 CTCCGTTCTAAAATAGATGACTTAACT 57.195 33.333 0.00 0.00 34.22 2.24
2795 3078 9.798994 TCTCCGTTCTAAAATAGATGACTTAAC 57.201 33.333 0.00 0.00 34.22 2.01
2797 3080 9.404848 TCTCTCCGTTCTAAAATAGATGACTTA 57.595 33.333 0.00 0.00 34.22 2.24
2798 3081 8.294954 TCTCTCCGTTCTAAAATAGATGACTT 57.705 34.615 0.00 0.00 34.22 3.01
2799 3082 7.558444 ACTCTCTCCGTTCTAAAATAGATGACT 59.442 37.037 0.00 0.00 34.22 3.41
2800 3083 7.708998 ACTCTCTCCGTTCTAAAATAGATGAC 58.291 38.462 0.00 0.00 34.22 3.06
2801 3084 7.883391 ACTCTCTCCGTTCTAAAATAGATGA 57.117 36.000 0.00 0.00 34.22 2.92
2854 3137 9.899661 ATACAAGATAAATTTACACTGCACCTA 57.100 29.630 0.00 0.00 0.00 3.08
2922 3205 2.855180 CCATTGCTTGCTTGTTCTACG 58.145 47.619 0.00 0.00 0.00 3.51
2951 3234 0.521867 CGCGACACAATTGAGCCATG 60.522 55.000 13.59 1.64 0.00 3.66
2985 3268 2.045340 ATGTTAGGTGGTGGGCGC 60.045 61.111 0.00 0.00 0.00 6.53
2986 3269 0.608035 AACATGTTAGGTGGTGGGCG 60.608 55.000 9.97 0.00 0.00 6.13
2987 3270 2.089201 GTAACATGTTAGGTGGTGGGC 58.911 52.381 18.56 0.24 0.00 5.36
2988 3271 2.040545 TGGTAACATGTTAGGTGGTGGG 59.959 50.000 18.56 0.00 46.17 4.61
2989 3272 3.426787 TGGTAACATGTTAGGTGGTGG 57.573 47.619 18.56 0.00 46.17 4.61
3003 3286 4.840271 ACTAATTGCCTACCACTGGTAAC 58.160 43.478 9.30 5.38 37.76 2.50
3008 3291 4.442706 CCACTACTAATTGCCTACCACTG 58.557 47.826 0.00 0.00 0.00 3.66
3012 3295 3.467803 CAGCCACTACTAATTGCCTACC 58.532 50.000 0.00 0.00 0.00 3.18
3017 3300 0.657840 CGCCAGCCACTACTAATTGC 59.342 55.000 0.00 0.00 0.00 3.56
3044 3327 0.323629 TACTTACCAGTGGCAGGTGC 59.676 55.000 9.78 0.00 40.26 5.01
3049 3332 3.241156 TGTACCTTACTTACCAGTGGCA 58.759 45.455 9.78 0.00 34.06 4.92
3055 3338 6.209391 GTCTACCACTTGTACCTTACTTACCA 59.791 42.308 0.00 0.00 0.00 3.25
3076 3359 2.440409 GTAGGTGGACGGTTCTGTCTA 58.560 52.381 10.91 3.07 38.91 2.59
3080 3363 0.037605 GTGGTAGGTGGACGGTTCTG 60.038 60.000 0.00 0.00 0.00 3.02
3084 3367 1.152398 ACTGTGGTAGGTGGACGGT 60.152 57.895 0.00 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.