Multiple sequence alignment - TraesCS6A01G039700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G039700 chr6A 100.000 2843 0 0 1 2843 20505871 20508713 0.000000e+00 5251.0
1 TraesCS6A01G039700 chr6A 93.023 43 1 2 1542 1583 2735684 2735643 8.500000e-06 62.1
2 TraesCS6A01G039700 chr6D 92.105 2394 144 27 128 2513 20550515 20552871 0.000000e+00 3332.0
3 TraesCS6A01G039700 chr6D 93.777 1639 72 13 177 1812 20548403 20550014 0.000000e+00 2435.0
4 TraesCS6A01G039700 chr6D 84.677 1736 209 23 128 1858 5254366 5252683 0.000000e+00 1679.0
5 TraesCS6A01G039700 chr6D 95.137 329 13 1 2515 2843 20589752 20590077 1.510000e-142 516.0
6 TraesCS6A01G039700 chr6B 90.958 2035 137 28 128 2154 35412390 35414385 0.000000e+00 2695.0
7 TraesCS6A01G039700 chr6B 92.945 326 16 2 2515 2836 35514783 35515105 4.290000e-128 468.0
8 TraesCS6A01G039700 chr1D 86.873 259 30 2 2589 2843 95935593 95935851 1.290000e-73 287.0
9 TraesCS6A01G039700 chr1D 91.935 124 7 3 4 126 150938136 150938015 1.350000e-38 171.0
10 TraesCS6A01G039700 chr1A 87.097 248 31 1 2596 2843 91174600 91174846 2.160000e-71 279.0
11 TraesCS6A01G039700 chr1B 85.938 256 35 1 2589 2843 156839004 156838749 3.610000e-69 272.0
12 TraesCS6A01G039700 chr1B 92.308 117 8 1 10 126 643050171 643050286 6.300000e-37 165.0
13 TraesCS6A01G039700 chr5D 92.742 124 8 1 3 126 138565548 138565670 8.090000e-41 178.0
14 TraesCS6A01G039700 chr5B 93.966 116 6 1 11 126 227837314 227837200 1.050000e-39 174.0
15 TraesCS6A01G039700 chr2A 91.406 128 10 1 3 130 613004582 613004708 1.050000e-39 174.0
16 TraesCS6A01G039700 chr2A 92.500 120 7 2 7 126 502330483 502330366 1.350000e-38 171.0
17 TraesCS6A01G039700 chr2A 92.500 120 7 2 7 126 609453942 609453825 1.350000e-38 171.0
18 TraesCS6A01G039700 chr4B 92.562 121 8 1 6 126 630039265 630039384 3.770000e-39 172.0
19 TraesCS6A01G039700 chr7B 91.129 124 8 3 4 126 5920128 5920249 6.300000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G039700 chr6A 20505871 20508713 2842 False 5251.0 5251 100.000 1 2843 1 chr6A.!!$F1 2842
1 TraesCS6A01G039700 chr6D 20548403 20552871 4468 False 2883.5 3332 92.941 128 2513 2 chr6D.!!$F2 2385
2 TraesCS6A01G039700 chr6D 5252683 5254366 1683 True 1679.0 1679 84.677 128 1858 1 chr6D.!!$R1 1730
3 TraesCS6A01G039700 chr6B 35412390 35414385 1995 False 2695.0 2695 90.958 128 2154 1 chr6B.!!$F1 2026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 4014 1.111277 GAATGGAAATGGAACCCCCG 58.889 55.0 0.0 0.0 37.93 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.453926 GATTAATAGATACTCCCTCCGTCC 57.546 45.833 0.00 0.00 0.00 4.79
24 25 2.493414 ATAGATACTCCCTCCGTCCG 57.507 55.000 0.00 0.00 0.00 4.79
25 26 0.399454 TAGATACTCCCTCCGTCCGG 59.601 60.000 0.00 0.00 0.00 5.14
26 27 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
27 28 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
28 29 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
29 30 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
30 31 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
31 32 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
32 33 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
33 34 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
34 35 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
35 36 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
36 37 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
37 38 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
38 39 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
39 40 2.354403 CCGTCCGGAAATACTTGTCCTT 60.354 50.000 5.23 0.00 37.50 3.36
40 41 2.671396 CGTCCGGAAATACTTGTCCTTG 59.329 50.000 5.23 0.00 0.00 3.61
41 42 3.615592 CGTCCGGAAATACTTGTCCTTGA 60.616 47.826 5.23 0.00 0.00 3.02
42 43 4.320870 GTCCGGAAATACTTGTCCTTGAA 58.679 43.478 5.23 0.00 0.00 2.69
43 44 4.758165 GTCCGGAAATACTTGTCCTTGAAA 59.242 41.667 5.23 0.00 0.00 2.69
44 45 4.758165 TCCGGAAATACTTGTCCTTGAAAC 59.242 41.667 0.00 0.00 0.00 2.78
45 46 4.378046 CCGGAAATACTTGTCCTTGAAACG 60.378 45.833 0.00 0.00 0.00 3.60
46 47 4.378046 CGGAAATACTTGTCCTTGAAACGG 60.378 45.833 0.00 0.00 0.00 4.44
47 48 4.517832 GGAAATACTTGTCCTTGAAACGGT 59.482 41.667 0.00 0.00 0.00 4.83
48 49 5.009310 GGAAATACTTGTCCTTGAAACGGTT 59.991 40.000 0.00 0.00 0.00 4.44
49 50 5.432885 AATACTTGTCCTTGAAACGGTTG 57.567 39.130 0.00 0.00 0.00 3.77
50 51 2.718563 ACTTGTCCTTGAAACGGTTGT 58.281 42.857 0.00 0.00 0.00 3.32
51 52 3.876341 ACTTGTCCTTGAAACGGTTGTA 58.124 40.909 0.00 0.00 0.00 2.41
52 53 4.263435 ACTTGTCCTTGAAACGGTTGTAA 58.737 39.130 0.00 0.00 0.00 2.41
53 54 4.095334 ACTTGTCCTTGAAACGGTTGTAAC 59.905 41.667 0.00 0.00 0.00 2.50
54 55 3.876341 TGTCCTTGAAACGGTTGTAACT 58.124 40.909 0.00 0.00 0.00 2.24
55 56 5.021033 TGTCCTTGAAACGGTTGTAACTA 57.979 39.130 0.00 0.00 0.00 2.24
56 57 5.051816 TGTCCTTGAAACGGTTGTAACTAG 58.948 41.667 0.00 0.00 0.00 2.57
57 58 5.163426 TGTCCTTGAAACGGTTGTAACTAGA 60.163 40.000 0.00 0.00 0.00 2.43
58 59 5.176406 GTCCTTGAAACGGTTGTAACTAGAC 59.824 44.000 0.00 0.00 0.00 2.59
59 60 5.069516 TCCTTGAAACGGTTGTAACTAGACT 59.930 40.000 0.00 0.00 0.00 3.24
60 61 5.756833 CCTTGAAACGGTTGTAACTAGACTT 59.243 40.000 0.00 0.00 0.00 3.01
61 62 6.925165 CCTTGAAACGGTTGTAACTAGACTTA 59.075 38.462 0.00 0.00 0.00 2.24
62 63 7.601508 CCTTGAAACGGTTGTAACTAGACTTAT 59.398 37.037 0.00 0.00 0.00 1.73
63 64 8.891671 TTGAAACGGTTGTAACTAGACTTATT 57.108 30.769 0.00 0.00 0.00 1.40
64 65 8.524870 TGAAACGGTTGTAACTAGACTTATTC 57.475 34.615 0.00 0.00 0.00 1.75
65 66 8.362639 TGAAACGGTTGTAACTAGACTTATTCT 58.637 33.333 0.00 0.00 38.51 2.40
66 67 9.846248 GAAACGGTTGTAACTAGACTTATTCTA 57.154 33.333 0.00 0.00 35.55 2.10
117 118 6.470557 TTTTAGGACAAGTATTTTCGGACG 57.529 37.500 0.00 0.00 0.00 4.79
118 119 2.968675 AGGACAAGTATTTTCGGACGG 58.031 47.619 0.00 0.00 0.00 4.79
119 120 2.564062 AGGACAAGTATTTTCGGACGGA 59.436 45.455 0.00 0.00 0.00 4.69
120 121 2.928116 GGACAAGTATTTTCGGACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
121 122 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
122 123 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
123 124 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
124 125 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
125 126 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
126 127 0.249398 ATTTTCGGACGGAGGGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
155 156 7.934457 AGTAATATGGCAAATGATCAAGTGTC 58.066 34.615 0.00 2.84 0.00 3.67
167 168 9.520515 AAATGATCAAGTGTCCAAGTAATAAGT 57.479 29.630 0.00 0.00 0.00 2.24
205 207 1.734465 GCCACTGAAGATTTGAGGTCG 59.266 52.381 0.00 0.00 0.00 4.79
282 284 5.671493 TCTCTTCTTTCCGAGTGAAAAACT 58.329 37.500 0.00 0.00 42.25 2.66
356 358 2.230266 AGAAAGAGACGAGAGGTTGCTC 59.770 50.000 0.00 0.00 0.00 4.26
373 375 3.854437 TGCTCTGACAGATAGGATGGAT 58.146 45.455 5.42 0.00 0.00 3.41
419 421 3.709141 GGAGCTCTAGTTTCTCCCTTCAT 59.291 47.826 14.64 0.00 40.29 2.57
461 463 6.095300 TGGTCTGCCAGATGTATGTAAAATTG 59.905 38.462 0.00 0.00 40.46 2.32
485 487 1.872388 TGAGTCCGCGTTGATTGAAA 58.128 45.000 4.92 0.00 0.00 2.69
508 510 0.657840 CGGCCCACTGATTCGATTTC 59.342 55.000 0.00 0.00 0.00 2.17
517 519 5.278463 CCACTGATTCGATTTCTTGTGGTTT 60.278 40.000 20.31 0.00 38.92 3.27
858 3011 4.286813 TCATCCTTATTCTGGAGGAGGT 57.713 45.455 4.27 0.00 44.77 3.85
860 3013 3.491766 TCCTTATTCTGGAGGAGGTGT 57.508 47.619 0.00 0.00 37.15 4.16
876 3029 3.435186 GTCTTCCTTGGCTGCCGC 61.435 66.667 14.98 0.00 0.00 6.53
1000 3153 3.007506 TGATGGCTTCGAAACCTCTGTTA 59.992 43.478 18.01 0.00 33.30 2.41
1053 3206 2.351060 CGTTCATCAGCACTTGCACAAT 60.351 45.455 3.62 0.00 45.16 2.71
1286 3439 4.445385 CCTTGAGTTTGATTTTGAAAGGCG 59.555 41.667 0.00 0.00 0.00 5.52
1374 3527 4.462834 TGCTTTCAGATCTTACGAGGAGAA 59.537 41.667 0.00 0.00 0.00 2.87
1385 3538 3.477210 ACGAGGAGAAGATAATTGCCC 57.523 47.619 0.00 0.00 0.00 5.36
1394 3547 1.288932 AGATAATTGCCCTGGCCTTGT 59.711 47.619 3.32 0.00 41.09 3.16
1423 3576 8.633075 TCTTTCAAAGTTAAAACTGAGCATTG 57.367 30.769 0.00 0.00 39.66 2.82
1785 3939 1.955778 CATTGGTGTGCTTCAAGGTCA 59.044 47.619 0.00 0.00 0.00 4.02
1798 3952 5.678107 GCTTCAAGGTCAGCAAGATATTTGG 60.678 44.000 0.00 0.00 35.95 3.28
1799 3953 5.178096 TCAAGGTCAGCAAGATATTTGGA 57.822 39.130 0.00 0.00 0.00 3.53
1800 3954 5.188434 TCAAGGTCAGCAAGATATTTGGAG 58.812 41.667 0.00 0.00 0.00 3.86
1801 3955 4.851639 AGGTCAGCAAGATATTTGGAGT 57.148 40.909 0.00 0.00 0.00 3.85
1808 3964 8.341173 GTCAGCAAGATATTTGGAGTAATTGAG 58.659 37.037 0.00 0.00 0.00 3.02
1858 4014 1.130561 GTTAGGGCAATGCAAGTCGAC 59.869 52.381 7.70 7.70 0.00 4.20
1988 4147 5.430886 TGATGCTTGCTAATCACTATGTGT 58.569 37.500 0.00 0.00 34.79 3.72
1994 4153 7.336679 TGCTTGCTAATCACTATGTGTGTAAAT 59.663 33.333 0.00 0.00 46.27 1.40
2003 4162 7.529158 TCACTATGTGTGTAAATGAAATGCTG 58.471 34.615 0.00 0.00 46.27 4.41
2113 4272 0.379669 CAGGAAATGAGCCACGCATC 59.620 55.000 0.00 0.00 0.00 3.91
2118 4277 4.019860 AGGAAATGAGCCACGCATCTATAT 60.020 41.667 0.00 0.00 0.00 0.86
2149 4308 1.734655 TTAGGATGATCTGGCCTCCC 58.265 55.000 3.32 0.00 33.28 4.30
2174 4333 2.715749 TCCCGCACTCAATGATGATT 57.284 45.000 0.00 0.00 34.37 2.57
2212 4371 0.955428 GTCTCTGGTTGATGCGGCAA 60.955 55.000 6.82 0.00 0.00 4.52
2219 4378 1.267806 GGTTGATGCGGCAATGGATAG 59.732 52.381 6.82 0.00 0.00 2.08
2240 4399 2.094130 GGAGAAGTTAGAACGACAGGGG 60.094 54.545 0.00 0.00 0.00 4.79
2241 4400 2.824341 GAGAAGTTAGAACGACAGGGGA 59.176 50.000 0.00 0.00 0.00 4.81
2249 4408 0.831307 AACGACAGGGGATAGCCTTC 59.169 55.000 0.00 0.00 0.00 3.46
2304 4463 9.308000 TGGATTGTTAATCATTAGTGTTTCCTT 57.692 29.630 4.19 0.00 39.71 3.36
2332 4492 8.144155 TGTTTGTATACAACGAATCAACTTCA 57.856 30.769 17.85 0.00 33.94 3.02
2343 4503 7.065216 ACGAATCAACTTCAATGTCTGTATG 57.935 36.000 0.00 0.00 33.10 2.39
2356 4516 9.936759 TCAATGTCTGTATGTTGAAGTATGTTA 57.063 29.630 0.00 0.00 0.00 2.41
2365 4525 7.993821 ATGTTGAAGTATGTTATCTCTCACG 57.006 36.000 0.00 0.00 0.00 4.35
2421 4581 3.085952 TCCTGCCCTTATGAAAAGTGG 57.914 47.619 0.00 0.00 0.00 4.00
2454 4614 8.448615 CAACTTAGCTAAAAACATGTAGGGTAC 58.551 37.037 7.74 0.00 0.00 3.34
2481 4641 4.943705 GGTGATGTTCATCTTGCCTTCTTA 59.056 41.667 12.94 0.00 0.00 2.10
2490 4650 6.528321 TCATCTTGCCTTCTTATATGACCAG 58.472 40.000 0.00 0.00 0.00 4.00
2493 4653 7.432148 TCTTGCCTTCTTATATGACCAGTTA 57.568 36.000 0.00 0.00 0.00 2.24
2494 4654 8.034313 TCTTGCCTTCTTATATGACCAGTTAT 57.966 34.615 0.00 0.00 0.00 1.89
2499 4659 9.944376 GCCTTCTTATATGACCAGTTATTATGA 57.056 33.333 0.00 0.00 0.00 2.15
2509 4669 8.731275 TGACCAGTTATTATGATTTAGTGGTG 57.269 34.615 13.30 0.00 35.91 4.17
2510 4670 8.544622 TGACCAGTTATTATGATTTAGTGGTGA 58.455 33.333 13.30 5.79 35.91 4.02
2512 4672 9.174166 ACCAGTTATTATGATTTAGTGGTGAAC 57.826 33.333 9.60 0.00 34.48 3.18
2513 4673 8.335356 CCAGTTATTATGATTTAGTGGTGAACG 58.665 37.037 0.00 0.00 0.00 3.95
2514 4674 9.093970 CAGTTATTATGATTTAGTGGTGAACGA 57.906 33.333 0.00 0.00 0.00 3.85
2515 4675 9.661563 AGTTATTATGATTTAGTGGTGAACGAA 57.338 29.630 0.00 0.00 0.00 3.85
2516 4676 9.698617 GTTATTATGATTTAGTGGTGAACGAAC 57.301 33.333 0.00 0.00 0.00 3.95
2517 4677 7.915293 ATTATGATTTAGTGGTGAACGAACA 57.085 32.000 0.00 0.00 0.00 3.18
2518 4678 7.915293 TTATGATTTAGTGGTGAACGAACAT 57.085 32.000 0.00 0.00 0.00 2.71
2519 4679 5.605564 TGATTTAGTGGTGAACGAACATG 57.394 39.130 0.00 0.00 0.00 3.21
2520 4680 5.301555 TGATTTAGTGGTGAACGAACATGA 58.698 37.500 0.00 0.00 0.00 3.07
2521 4681 5.408299 TGATTTAGTGGTGAACGAACATGAG 59.592 40.000 0.00 0.00 0.00 2.90
2522 4682 1.512926 AGTGGTGAACGAACATGAGC 58.487 50.000 0.00 0.00 0.00 4.26
2523 4683 1.202639 AGTGGTGAACGAACATGAGCA 60.203 47.619 0.00 0.00 0.00 4.26
2524 4684 1.806542 GTGGTGAACGAACATGAGCAT 59.193 47.619 0.00 0.00 0.00 3.79
2525 4685 3.000041 GTGGTGAACGAACATGAGCATA 59.000 45.455 0.00 0.00 0.00 3.14
2526 4686 3.062639 GTGGTGAACGAACATGAGCATAG 59.937 47.826 0.00 0.00 0.00 2.23
2527 4687 2.609459 GGTGAACGAACATGAGCATAGG 59.391 50.000 0.00 0.00 0.00 2.57
2528 4688 3.262420 GTGAACGAACATGAGCATAGGT 58.738 45.455 0.00 0.00 0.00 3.08
2529 4689 3.062639 GTGAACGAACATGAGCATAGGTG 59.937 47.826 0.00 0.00 0.00 4.00
2540 4700 3.494850 CATAGGTGCATTCCCGGTT 57.505 52.632 0.00 0.00 0.00 4.44
2541 4701 1.024271 CATAGGTGCATTCCCGGTTG 58.976 55.000 0.00 0.00 0.00 3.77
2542 4702 0.916086 ATAGGTGCATTCCCGGTTGA 59.084 50.000 0.00 0.00 0.00 3.18
2543 4703 0.251916 TAGGTGCATTCCCGGTTGAG 59.748 55.000 0.00 0.00 0.00 3.02
2544 4704 2.700773 GGTGCATTCCCGGTTGAGC 61.701 63.158 0.00 0.00 0.00 4.26
2545 4705 1.675641 GTGCATTCCCGGTTGAGCT 60.676 57.895 0.00 0.00 0.00 4.09
2546 4706 1.074775 TGCATTCCCGGTTGAGCTT 59.925 52.632 0.00 0.00 0.00 3.74
2547 4707 0.539438 TGCATTCCCGGTTGAGCTTT 60.539 50.000 0.00 0.00 0.00 3.51
2548 4708 0.109132 GCATTCCCGGTTGAGCTTTG 60.109 55.000 0.00 0.00 0.00 2.77
2549 4709 1.533625 CATTCCCGGTTGAGCTTTGA 58.466 50.000 0.00 0.00 0.00 2.69
2550 4710 2.094675 CATTCCCGGTTGAGCTTTGAT 58.905 47.619 0.00 0.00 0.00 2.57
2551 4711 2.286365 TTCCCGGTTGAGCTTTGATT 57.714 45.000 0.00 0.00 0.00 2.57
2552 4712 3.426787 TTCCCGGTTGAGCTTTGATTA 57.573 42.857 0.00 0.00 0.00 1.75
2553 4713 3.644966 TCCCGGTTGAGCTTTGATTAT 57.355 42.857 0.00 0.00 0.00 1.28
2554 4714 4.764050 TCCCGGTTGAGCTTTGATTATA 57.236 40.909 0.00 0.00 0.00 0.98
2555 4715 5.304686 TCCCGGTTGAGCTTTGATTATAT 57.695 39.130 0.00 0.00 0.00 0.86
2556 4716 6.428083 TCCCGGTTGAGCTTTGATTATATA 57.572 37.500 0.00 0.00 0.00 0.86
2557 4717 6.833041 TCCCGGTTGAGCTTTGATTATATAA 58.167 36.000 0.00 0.00 0.00 0.98
2558 4718 6.934645 TCCCGGTTGAGCTTTGATTATATAAG 59.065 38.462 0.00 0.00 0.00 1.73
2559 4719 6.149474 CCCGGTTGAGCTTTGATTATATAAGG 59.851 42.308 0.00 0.00 0.00 2.69
2560 4720 6.348540 CCGGTTGAGCTTTGATTATATAAGGC 60.349 42.308 1.02 1.34 0.00 4.35
2561 4721 6.204688 CGGTTGAGCTTTGATTATATAAGGCA 59.795 38.462 1.02 0.00 32.06 4.75
2562 4722 7.094634 CGGTTGAGCTTTGATTATATAAGGCAT 60.095 37.037 1.02 0.00 32.06 4.40
2563 4723 9.231297 GGTTGAGCTTTGATTATATAAGGCATA 57.769 33.333 1.02 0.00 32.06 3.14
2566 4726 9.658799 TGAGCTTTGATTATATAAGGCATACTC 57.341 33.333 1.02 8.88 32.06 2.59
2567 4727 9.658799 GAGCTTTGATTATATAAGGCATACTCA 57.341 33.333 1.02 0.00 32.06 3.41
2589 4749 6.997655 TCATCAGTGAGAAGTGAATACTTGT 58.002 36.000 0.00 0.00 46.79 3.16
2596 4756 6.804534 GAGAAGTGAATACTTGTCGATCAG 57.195 41.667 0.00 0.00 46.79 2.90
2597 4757 6.274157 AGAAGTGAATACTTGTCGATCAGT 57.726 37.500 4.98 4.98 46.79 3.41
2598 4758 6.326375 AGAAGTGAATACTTGTCGATCAGTC 58.674 40.000 2.90 0.00 46.79 3.51
2599 4759 4.663166 AGTGAATACTTGTCGATCAGTCG 58.337 43.478 2.90 0.00 40.86 4.18
2600 4760 4.438880 AGTGAATACTTGTCGATCAGTCGG 60.439 45.833 2.90 0.00 40.29 4.79
2601 4761 7.392683 AGTGAATACTTGTCGATCAGTCGGG 62.393 48.000 2.90 0.00 40.29 5.14
2609 4769 2.483583 CGATCAGTCGGGAGAAGAAG 57.516 55.000 0.00 0.00 44.00 2.85
2610 4770 1.535015 CGATCAGTCGGGAGAAGAAGC 60.535 57.143 0.00 0.00 44.00 3.86
2611 4771 1.754226 GATCAGTCGGGAGAAGAAGCT 59.246 52.381 0.00 0.00 42.89 3.74
2612 4772 2.509166 TCAGTCGGGAGAAGAAGCTA 57.491 50.000 0.00 0.00 42.89 3.32
2613 4773 2.370349 TCAGTCGGGAGAAGAAGCTAG 58.630 52.381 0.00 0.00 42.89 3.42
2614 4774 1.407258 CAGTCGGGAGAAGAAGCTAGG 59.593 57.143 0.00 0.00 42.89 3.02
2615 4775 0.103390 GTCGGGAGAAGAAGCTAGGC 59.897 60.000 0.00 0.00 42.89 3.93
2616 4776 0.324368 TCGGGAGAAGAAGCTAGGCA 60.324 55.000 0.00 0.00 34.75 4.75
2617 4777 0.755686 CGGGAGAAGAAGCTAGGCAT 59.244 55.000 0.00 0.00 0.00 4.40
2618 4778 1.539929 CGGGAGAAGAAGCTAGGCATG 60.540 57.143 0.00 0.00 0.00 4.06
2619 4779 1.488393 GGGAGAAGAAGCTAGGCATGT 59.512 52.381 0.00 0.00 0.00 3.21
2620 4780 2.484594 GGGAGAAGAAGCTAGGCATGTC 60.485 54.545 0.00 0.00 0.00 3.06
2621 4781 2.468831 GAGAAGAAGCTAGGCATGTCG 58.531 52.381 0.00 0.00 0.00 4.35
2622 4782 2.099921 GAGAAGAAGCTAGGCATGTCGA 59.900 50.000 0.00 0.00 0.00 4.20
2623 4783 2.159170 AGAAGAAGCTAGGCATGTCGAC 60.159 50.000 9.11 9.11 0.00 4.20
2624 4784 0.101399 AGAAGCTAGGCATGTCGACG 59.899 55.000 11.62 0.00 0.00 5.12
2625 4785 0.872021 GAAGCTAGGCATGTCGACGG 60.872 60.000 11.62 6.88 0.00 4.79
2626 4786 1.320344 AAGCTAGGCATGTCGACGGA 61.320 55.000 11.62 0.00 0.00 4.69
2627 4787 1.109920 AGCTAGGCATGTCGACGGAT 61.110 55.000 11.62 0.00 0.00 4.18
2628 4788 0.941463 GCTAGGCATGTCGACGGATG 60.941 60.000 11.62 11.08 0.00 3.51
2629 4789 0.941463 CTAGGCATGTCGACGGATGC 60.941 60.000 25.07 25.07 43.60 3.91
2630 4790 1.671901 TAGGCATGTCGACGGATGCA 61.672 55.000 30.49 16.17 45.70 3.96
2631 4791 2.528743 GGCATGTCGACGGATGCAG 61.529 63.158 30.49 10.81 45.70 4.41
2632 4792 2.528743 GCATGTCGACGGATGCAGG 61.529 63.158 27.01 7.26 43.75 4.85
2633 4793 1.884464 CATGTCGACGGATGCAGGG 60.884 63.158 11.62 0.00 0.00 4.45
2634 4794 2.058001 ATGTCGACGGATGCAGGGA 61.058 57.895 11.62 0.00 0.00 4.20
2635 4795 1.613317 ATGTCGACGGATGCAGGGAA 61.613 55.000 11.62 0.00 0.00 3.97
2636 4796 1.519455 GTCGACGGATGCAGGGAAG 60.519 63.158 0.00 0.00 0.00 3.46
2637 4797 1.680989 TCGACGGATGCAGGGAAGA 60.681 57.895 0.00 0.00 0.00 2.87
2638 4798 1.218047 CGACGGATGCAGGGAAGAA 59.782 57.895 0.00 0.00 0.00 2.52
2639 4799 0.807667 CGACGGATGCAGGGAAGAAG 60.808 60.000 0.00 0.00 0.00 2.85
2640 4800 0.462759 GACGGATGCAGGGAAGAAGG 60.463 60.000 0.00 0.00 0.00 3.46
2641 4801 1.201429 ACGGATGCAGGGAAGAAGGT 61.201 55.000 0.00 0.00 0.00 3.50
2642 4802 0.745845 CGGATGCAGGGAAGAAGGTG 60.746 60.000 0.00 0.00 0.00 4.00
2643 4803 0.329596 GGATGCAGGGAAGAAGGTGT 59.670 55.000 0.00 0.00 0.00 4.16
2644 4804 1.559682 GGATGCAGGGAAGAAGGTGTA 59.440 52.381 0.00 0.00 0.00 2.90
2645 4805 2.633488 GATGCAGGGAAGAAGGTGTAC 58.367 52.381 0.00 0.00 0.00 2.90
2646 4806 0.320374 TGCAGGGAAGAAGGTGTACG 59.680 55.000 0.00 0.00 0.00 3.67
2647 4807 0.320697 GCAGGGAAGAAGGTGTACGT 59.679 55.000 0.00 0.00 0.00 3.57
2648 4808 1.270678 GCAGGGAAGAAGGTGTACGTT 60.271 52.381 0.00 0.00 0.00 3.99
2649 4809 2.413837 CAGGGAAGAAGGTGTACGTTG 58.586 52.381 0.00 0.00 0.00 4.10
2650 4810 2.044758 AGGGAAGAAGGTGTACGTTGT 58.955 47.619 0.00 0.00 0.00 3.32
2651 4811 2.436911 AGGGAAGAAGGTGTACGTTGTT 59.563 45.455 0.00 0.34 31.36 2.83
2652 4812 2.546789 GGGAAGAAGGTGTACGTTGTTG 59.453 50.000 0.00 0.00 29.33 3.33
2653 4813 2.032290 GGAAGAAGGTGTACGTTGTTGC 60.032 50.000 0.00 4.33 31.09 4.17
2654 4814 2.319136 AGAAGGTGTACGTTGTTGCA 57.681 45.000 0.00 0.00 0.00 4.08
2655 4815 2.634600 AGAAGGTGTACGTTGTTGCAA 58.365 42.857 0.00 0.00 0.00 4.08
2656 4816 3.211045 AGAAGGTGTACGTTGTTGCAAT 58.789 40.909 0.59 0.00 0.00 3.56
2657 4817 3.003275 AGAAGGTGTACGTTGTTGCAATG 59.997 43.478 0.59 0.00 0.00 2.82
2658 4818 1.606668 AGGTGTACGTTGTTGCAATGG 59.393 47.619 0.59 0.00 0.00 3.16
2659 4819 1.335496 GGTGTACGTTGTTGCAATGGT 59.665 47.619 0.59 1.09 0.00 3.55
2660 4820 2.380660 GTGTACGTTGTTGCAATGGTG 58.619 47.619 0.59 0.00 0.00 4.17
2661 4821 2.032302 GTGTACGTTGTTGCAATGGTGA 59.968 45.455 0.59 0.00 0.00 4.02
2662 4822 2.881513 TGTACGTTGTTGCAATGGTGAT 59.118 40.909 0.59 0.00 0.00 3.06
2663 4823 3.316588 TGTACGTTGTTGCAATGGTGATT 59.683 39.130 0.59 0.00 0.00 2.57
2664 4824 3.011949 ACGTTGTTGCAATGGTGATTC 57.988 42.857 0.59 0.00 0.00 2.52
2665 4825 1.978097 CGTTGTTGCAATGGTGATTCG 59.022 47.619 0.59 0.00 0.00 3.34
2666 4826 2.327568 GTTGTTGCAATGGTGATTCGG 58.672 47.619 0.59 0.00 0.00 4.30
2667 4827 0.887247 TGTTGCAATGGTGATTCGGG 59.113 50.000 0.59 0.00 0.00 5.14
2668 4828 0.887933 GTTGCAATGGTGATTCGGGT 59.112 50.000 0.59 0.00 0.00 5.28
2669 4829 0.887247 TTGCAATGGTGATTCGGGTG 59.113 50.000 0.00 0.00 0.00 4.61
2670 4830 0.037447 TGCAATGGTGATTCGGGTGA 59.963 50.000 0.00 0.00 0.00 4.02
2671 4831 1.340893 TGCAATGGTGATTCGGGTGAT 60.341 47.619 0.00 0.00 0.00 3.06
2672 4832 1.334869 GCAATGGTGATTCGGGTGATC 59.665 52.381 0.00 0.00 0.00 2.92
2673 4833 2.923121 CAATGGTGATTCGGGTGATCT 58.077 47.619 0.00 0.00 0.00 2.75
2674 4834 3.744214 GCAATGGTGATTCGGGTGATCTA 60.744 47.826 0.00 0.00 0.00 1.98
2675 4835 3.753294 ATGGTGATTCGGGTGATCTAC 57.247 47.619 0.00 0.00 0.00 2.59
2676 4836 2.462723 TGGTGATTCGGGTGATCTACA 58.537 47.619 0.00 0.00 0.00 2.74
2685 4845 3.760693 GTGATCTACACCGGCATGT 57.239 52.632 0.00 1.09 43.05 3.21
2686 4846 2.882927 GTGATCTACACCGGCATGTA 57.117 50.000 0.00 2.53 43.05 2.29
2687 4847 2.470821 GTGATCTACACCGGCATGTAC 58.529 52.381 0.00 0.00 43.05 2.90
2688 4848 2.104170 TGATCTACACCGGCATGTACA 58.896 47.619 0.00 0.00 33.85 2.90
2689 4849 2.698274 TGATCTACACCGGCATGTACAT 59.302 45.455 0.00 1.41 33.85 2.29
2690 4850 2.882927 TCTACACCGGCATGTACATC 57.117 50.000 5.07 1.16 33.85 3.06
2691 4851 1.066454 TCTACACCGGCATGTACATCG 59.934 52.381 5.07 7.67 33.85 3.84
2692 4852 0.818938 TACACCGGCATGTACATCGT 59.181 50.000 5.07 0.00 33.85 3.73
2693 4853 0.459585 ACACCGGCATGTACATCGTC 60.460 55.000 5.07 2.73 0.00 4.20
2694 4854 0.179111 CACCGGCATGTACATCGTCT 60.179 55.000 5.07 0.00 0.00 4.18
2695 4855 0.102481 ACCGGCATGTACATCGTCTC 59.898 55.000 5.07 0.00 0.00 3.36
2696 4856 0.597637 CCGGCATGTACATCGTCTCC 60.598 60.000 5.07 1.92 0.00 3.71
2697 4857 0.102300 CGGCATGTACATCGTCTCCA 59.898 55.000 5.07 0.00 0.00 3.86
2698 4858 1.470805 CGGCATGTACATCGTCTCCAA 60.471 52.381 5.07 0.00 0.00 3.53
2699 4859 2.205074 GGCATGTACATCGTCTCCAAG 58.795 52.381 5.07 0.00 0.00 3.61
2700 4860 2.205074 GCATGTACATCGTCTCCAAGG 58.795 52.381 5.07 0.00 0.00 3.61
2701 4861 2.205074 CATGTACATCGTCTCCAAGGC 58.795 52.381 5.07 0.00 0.00 4.35
2702 4862 0.172578 TGTACATCGTCTCCAAGGCG 59.827 55.000 0.00 0.00 46.14 5.52
2703 4863 0.527817 GTACATCGTCTCCAAGGCGG 60.528 60.000 0.70 0.00 44.63 6.13
2704 4864 2.292794 TACATCGTCTCCAAGGCGGC 62.293 60.000 0.00 0.00 44.63 6.53
2705 4865 4.162690 ATCGTCTCCAAGGCGGCC 62.163 66.667 12.11 12.11 44.63 6.13
2707 4867 4.394712 CGTCTCCAAGGCGGCCTT 62.395 66.667 28.12 28.12 45.88 4.35
2708 4868 2.436824 GTCTCCAAGGCGGCCTTC 60.437 66.667 30.66 15.84 42.67 3.46
2709 4869 4.082523 TCTCCAAGGCGGCCTTCG 62.083 66.667 30.66 24.59 42.67 3.79
2710 4870 4.082523 CTCCAAGGCGGCCTTCGA 62.083 66.667 30.66 27.28 42.67 3.71
2721 4881 4.812476 CCTTCGACGGCGGCATGA 62.812 66.667 15.54 0.00 38.28 3.07
2722 4882 2.813474 CTTCGACGGCGGCATGAA 60.813 61.111 15.54 8.37 38.28 2.57
2723 4883 2.125310 TTCGACGGCGGCATGAAT 60.125 55.556 15.54 0.00 38.28 2.57
2724 4884 0.874175 CTTCGACGGCGGCATGAATA 60.874 55.000 15.54 0.00 38.28 1.75
2725 4885 1.149361 TTCGACGGCGGCATGAATAC 61.149 55.000 15.54 0.00 38.28 1.89
2726 4886 2.594962 CGACGGCGGCATGAATACC 61.595 63.158 15.54 0.00 0.00 2.73
2727 4887 1.227556 GACGGCGGCATGAATACCT 60.228 57.895 8.47 0.00 0.00 3.08
2728 4888 0.814010 GACGGCGGCATGAATACCTT 60.814 55.000 8.47 0.00 0.00 3.50
2729 4889 0.393808 ACGGCGGCATGAATACCTTT 60.394 50.000 13.24 0.00 0.00 3.11
2730 4890 0.029300 CGGCGGCATGAATACCTTTG 59.971 55.000 10.53 0.00 0.00 2.77
2731 4891 1.102978 GGCGGCATGAATACCTTTGT 58.897 50.000 3.07 0.00 0.00 2.83
2732 4892 1.202290 GGCGGCATGAATACCTTTGTG 60.202 52.381 3.07 0.00 0.00 3.33
2733 4893 1.472480 GCGGCATGAATACCTTTGTGT 59.528 47.619 0.00 0.00 0.00 3.72
2734 4894 2.094752 GCGGCATGAATACCTTTGTGTT 60.095 45.455 0.00 0.00 0.00 3.32
2735 4895 3.758300 CGGCATGAATACCTTTGTGTTC 58.242 45.455 0.00 0.00 41.48 3.18
2744 4904 8.547967 TGAATACCTTTGTGTTCATCTTCTAC 57.452 34.615 1.44 0.00 44.54 2.59
2745 4905 7.606456 TGAATACCTTTGTGTTCATCTTCTACC 59.394 37.037 1.44 0.00 44.54 3.18
2746 4906 4.315803 ACCTTTGTGTTCATCTTCTACCG 58.684 43.478 0.00 0.00 0.00 4.02
2747 4907 3.125316 CCTTTGTGTTCATCTTCTACCGC 59.875 47.826 0.00 0.00 0.00 5.68
2748 4908 2.380084 TGTGTTCATCTTCTACCGCC 57.620 50.000 0.00 0.00 0.00 6.13
2749 4909 1.621317 TGTGTTCATCTTCTACCGCCA 59.379 47.619 0.00 0.00 0.00 5.69
2750 4910 2.271800 GTGTTCATCTTCTACCGCCAG 58.728 52.381 0.00 0.00 0.00 4.85
2751 4911 1.207089 TGTTCATCTTCTACCGCCAGG 59.793 52.381 0.00 0.00 45.13 4.45
2752 4912 0.178068 TTCATCTTCTACCGCCAGGC 59.822 55.000 0.00 0.00 42.76 4.85
2753 4913 0.975556 TCATCTTCTACCGCCAGGCA 60.976 55.000 13.30 0.00 42.76 4.75
2754 4914 0.531532 CATCTTCTACCGCCAGGCAG 60.532 60.000 13.30 1.60 42.76 4.85
2755 4915 2.317149 ATCTTCTACCGCCAGGCAGC 62.317 60.000 13.30 0.00 42.76 5.25
2756 4916 4.096003 TTCTACCGCCAGGCAGCC 62.096 66.667 13.30 1.84 42.76 4.85
2768 4928 2.817396 GCAGCCGCCAGTCTTCTC 60.817 66.667 0.00 0.00 0.00 2.87
2769 4929 2.977178 CAGCCGCCAGTCTTCTCT 59.023 61.111 0.00 0.00 0.00 3.10
2770 4930 1.294780 CAGCCGCCAGTCTTCTCTT 59.705 57.895 0.00 0.00 0.00 2.85
2771 4931 1.018226 CAGCCGCCAGTCTTCTCTTG 61.018 60.000 0.00 0.00 0.00 3.02
2772 4932 2.394563 GCCGCCAGTCTTCTCTTGC 61.395 63.158 0.00 0.00 0.00 4.01
2773 4933 1.294780 CCGCCAGTCTTCTCTTGCT 59.705 57.895 0.00 0.00 0.00 3.91
2774 4934 0.532573 CCGCCAGTCTTCTCTTGCTA 59.467 55.000 0.00 0.00 0.00 3.49
2775 4935 1.634702 CGCCAGTCTTCTCTTGCTAC 58.365 55.000 0.00 0.00 0.00 3.58
2776 4936 1.737363 CGCCAGTCTTCTCTTGCTACC 60.737 57.143 0.00 0.00 0.00 3.18
2777 4937 1.406205 GCCAGTCTTCTCTTGCTACCC 60.406 57.143 0.00 0.00 0.00 3.69
2778 4938 1.208293 CCAGTCTTCTCTTGCTACCCC 59.792 57.143 0.00 0.00 0.00 4.95
2779 4939 2.183679 CAGTCTTCTCTTGCTACCCCT 58.816 52.381 0.00 0.00 0.00 4.79
2780 4940 2.167487 CAGTCTTCTCTTGCTACCCCTC 59.833 54.545 0.00 0.00 0.00 4.30
2781 4941 1.135333 GTCTTCTCTTGCTACCCCTCG 59.865 57.143 0.00 0.00 0.00 4.63
2782 4942 0.179097 CTTCTCTTGCTACCCCTCGC 60.179 60.000 0.00 0.00 0.00 5.03
2783 4943 1.614241 TTCTCTTGCTACCCCTCGCC 61.614 60.000 0.00 0.00 0.00 5.54
2784 4944 2.284331 TCTTGCTACCCCTCGCCA 60.284 61.111 0.00 0.00 0.00 5.69
2785 4945 1.689233 TCTTGCTACCCCTCGCCAT 60.689 57.895 0.00 0.00 0.00 4.40
2786 4946 1.227674 CTTGCTACCCCTCGCCATC 60.228 63.158 0.00 0.00 0.00 3.51
2787 4947 1.689233 TTGCTACCCCTCGCCATCT 60.689 57.895 0.00 0.00 0.00 2.90
2788 4948 1.271840 TTGCTACCCCTCGCCATCTT 61.272 55.000 0.00 0.00 0.00 2.40
2789 4949 1.069935 GCTACCCCTCGCCATCTTC 59.930 63.158 0.00 0.00 0.00 2.87
2790 4950 1.749033 CTACCCCTCGCCATCTTCC 59.251 63.158 0.00 0.00 0.00 3.46
2791 4951 0.760945 CTACCCCTCGCCATCTTCCT 60.761 60.000 0.00 0.00 0.00 3.36
2792 4952 0.326238 TACCCCTCGCCATCTTCCTT 60.326 55.000 0.00 0.00 0.00 3.36
2793 4953 1.153086 CCCCTCGCCATCTTCCTTG 60.153 63.158 0.00 0.00 0.00 3.61
2794 4954 1.626356 CCCCTCGCCATCTTCCTTGA 61.626 60.000 0.00 0.00 0.00 3.02
2795 4955 0.253044 CCCTCGCCATCTTCCTTGAA 59.747 55.000 0.00 0.00 0.00 2.69
2796 4956 1.340017 CCCTCGCCATCTTCCTTGAAA 60.340 52.381 0.00 0.00 0.00 2.69
2797 4957 2.012673 CCTCGCCATCTTCCTTGAAAG 58.987 52.381 0.00 0.00 0.00 2.62
2799 4959 1.351017 TCGCCATCTTCCTTGAAAGGT 59.649 47.619 8.91 0.00 46.54 3.50
2800 4960 2.569853 TCGCCATCTTCCTTGAAAGGTA 59.430 45.455 8.91 0.00 46.54 3.08
2801 4961 3.008594 TCGCCATCTTCCTTGAAAGGTAA 59.991 43.478 8.91 2.28 46.54 2.85
2802 4962 3.947834 CGCCATCTTCCTTGAAAGGTAAT 59.052 43.478 8.91 0.00 46.54 1.89
2803 4963 4.399303 CGCCATCTTCCTTGAAAGGTAATT 59.601 41.667 8.91 0.00 46.54 1.40
2804 4964 5.588648 CGCCATCTTCCTTGAAAGGTAATTA 59.411 40.000 8.91 0.00 46.54 1.40
2805 4965 6.094881 CGCCATCTTCCTTGAAAGGTAATTAA 59.905 38.462 8.91 0.00 46.54 1.40
2806 4966 7.258441 GCCATCTTCCTTGAAAGGTAATTAAC 58.742 38.462 8.91 0.00 46.54 2.01
2807 4967 7.122799 GCCATCTTCCTTGAAAGGTAATTAACT 59.877 37.037 8.91 0.00 46.54 2.24
2808 4968 9.681062 CCATCTTCCTTGAAAGGTAATTAACTA 57.319 33.333 2.78 0.00 46.54 2.24
2841 5001 8.332996 AGTTACTTAGTTACTCGATCAAGACA 57.667 34.615 0.00 0.00 0.00 3.41
2842 5002 8.958506 AGTTACTTAGTTACTCGATCAAGACAT 58.041 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.066246 CGGACGGAGGGAGTATCTATTAATC 59.934 48.000 0.00 0.00 33.73 1.75
1 2 4.948621 CGGACGGAGGGAGTATCTATTAAT 59.051 45.833 0.00 0.00 33.73 1.40
2 3 4.330250 CGGACGGAGGGAGTATCTATTAA 58.670 47.826 0.00 0.00 33.73 1.40
3 4 3.307975 CCGGACGGAGGGAGTATCTATTA 60.308 52.174 4.40 0.00 37.50 0.98
4 5 2.554785 CCGGACGGAGGGAGTATCTATT 60.555 54.545 4.40 0.00 37.50 1.73
5 6 1.004511 CCGGACGGAGGGAGTATCTAT 59.995 57.143 4.40 0.00 37.50 1.98
6 7 0.399454 CCGGACGGAGGGAGTATCTA 59.601 60.000 4.40 0.00 37.50 1.98
7 8 1.150992 CCGGACGGAGGGAGTATCT 59.849 63.158 4.40 0.00 37.50 1.98
8 9 0.466922 TTCCGGACGGAGGGAGTATC 60.467 60.000 13.64 0.00 46.06 2.24
9 10 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
10 11 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
11 12 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
12 13 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
13 14 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
14 15 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
15 16 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
16 17 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
17 18 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
18 19 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
19 20 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
20 21 3.934068 TCAAGGACAAGTATTTCCGGAC 58.066 45.455 1.83 0.00 36.95 4.79
21 22 4.627284 TTCAAGGACAAGTATTTCCGGA 57.373 40.909 0.00 0.00 36.95 5.14
22 23 4.378046 CGTTTCAAGGACAAGTATTTCCGG 60.378 45.833 0.00 0.00 36.95 5.14
23 24 4.378046 CCGTTTCAAGGACAAGTATTTCCG 60.378 45.833 0.00 0.00 36.95 4.30
24 25 4.517832 ACCGTTTCAAGGACAAGTATTTCC 59.482 41.667 0.00 0.00 0.00 3.13
25 26 5.684550 ACCGTTTCAAGGACAAGTATTTC 57.315 39.130 0.00 0.00 0.00 2.17
26 27 5.358725 ACAACCGTTTCAAGGACAAGTATTT 59.641 36.000 0.00 0.00 0.00 1.40
27 28 4.885325 ACAACCGTTTCAAGGACAAGTATT 59.115 37.500 0.00 0.00 0.00 1.89
28 29 4.457466 ACAACCGTTTCAAGGACAAGTAT 58.543 39.130 0.00 0.00 0.00 2.12
29 30 3.876341 ACAACCGTTTCAAGGACAAGTA 58.124 40.909 0.00 0.00 0.00 2.24
30 31 2.718563 ACAACCGTTTCAAGGACAAGT 58.281 42.857 0.00 0.00 0.00 3.16
31 32 4.334481 AGTTACAACCGTTTCAAGGACAAG 59.666 41.667 0.00 0.00 0.00 3.16
32 33 4.263435 AGTTACAACCGTTTCAAGGACAA 58.737 39.130 0.00 0.00 0.00 3.18
33 34 3.876341 AGTTACAACCGTTTCAAGGACA 58.124 40.909 0.00 0.00 0.00 4.02
34 35 5.176406 GTCTAGTTACAACCGTTTCAAGGAC 59.824 44.000 0.00 0.00 0.00 3.85
35 36 5.069516 AGTCTAGTTACAACCGTTTCAAGGA 59.930 40.000 0.00 0.00 0.00 3.36
36 37 5.295152 AGTCTAGTTACAACCGTTTCAAGG 58.705 41.667 0.00 0.00 0.00 3.61
37 38 6.839820 AAGTCTAGTTACAACCGTTTCAAG 57.160 37.500 0.00 0.00 0.00 3.02
38 39 8.891671 AATAAGTCTAGTTACAACCGTTTCAA 57.108 30.769 0.00 0.00 0.00 2.69
39 40 8.362639 AGAATAAGTCTAGTTACAACCGTTTCA 58.637 33.333 0.00 0.00 33.56 2.69
40 41 8.754230 AGAATAAGTCTAGTTACAACCGTTTC 57.246 34.615 0.00 0.00 33.56 2.78
93 94 6.073112 CCGTCCGAAAATACTTGTCCTAAAAA 60.073 38.462 0.00 0.00 0.00 1.94
94 95 5.409214 CCGTCCGAAAATACTTGTCCTAAAA 59.591 40.000 0.00 0.00 0.00 1.52
95 96 4.931002 CCGTCCGAAAATACTTGTCCTAAA 59.069 41.667 0.00 0.00 0.00 1.85
96 97 4.220382 TCCGTCCGAAAATACTTGTCCTAA 59.780 41.667 0.00 0.00 0.00 2.69
97 98 3.763360 TCCGTCCGAAAATACTTGTCCTA 59.237 43.478 0.00 0.00 0.00 2.94
98 99 2.564062 TCCGTCCGAAAATACTTGTCCT 59.436 45.455 0.00 0.00 0.00 3.85
99 100 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
100 101 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
101 102 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
102 103 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
103 104 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
104 105 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
105 106 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
106 107 1.479323 CACTCCCTCCGTCCGAAAATA 59.521 52.381 0.00 0.00 0.00 1.40
107 108 0.249398 CACTCCCTCCGTCCGAAAAT 59.751 55.000 0.00 0.00 0.00 1.82
108 109 1.669440 CACTCCCTCCGTCCGAAAA 59.331 57.895 0.00 0.00 0.00 2.29
109 110 2.939261 GCACTCCCTCCGTCCGAAA 61.939 63.158 0.00 0.00 0.00 3.46
110 111 3.379445 GCACTCCCTCCGTCCGAA 61.379 66.667 0.00 0.00 0.00 4.30
111 112 4.671590 TGCACTCCCTCCGTCCGA 62.672 66.667 0.00 0.00 0.00 4.55
112 113 3.234630 TTTGCACTCCCTCCGTCCG 62.235 63.158 0.00 0.00 0.00 4.79
113 114 1.376037 CTTTGCACTCCCTCCGTCC 60.376 63.158 0.00 0.00 0.00 4.79
114 115 0.606604 TACTTTGCACTCCCTCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
115 116 1.053424 TTACTTTGCACTCCCTCCGT 58.947 50.000 0.00 0.00 0.00 4.69
116 117 2.403252 ATTACTTTGCACTCCCTCCG 57.597 50.000 0.00 0.00 0.00 4.63
117 118 4.137543 CCATATTACTTTGCACTCCCTCC 58.862 47.826 0.00 0.00 0.00 4.30
118 119 3.565902 GCCATATTACTTTGCACTCCCTC 59.434 47.826 0.00 0.00 0.00 4.30
119 120 3.053693 TGCCATATTACTTTGCACTCCCT 60.054 43.478 0.00 0.00 0.00 4.20
120 121 3.287222 TGCCATATTACTTTGCACTCCC 58.713 45.455 0.00 0.00 0.00 4.30
121 122 4.981806 TTGCCATATTACTTTGCACTCC 57.018 40.909 0.00 0.00 0.00 3.85
122 123 6.563422 TCATTTGCCATATTACTTTGCACTC 58.437 36.000 0.00 0.00 0.00 3.51
123 124 6.528537 TCATTTGCCATATTACTTTGCACT 57.471 33.333 0.00 0.00 0.00 4.40
124 125 6.979817 TGATCATTTGCCATATTACTTTGCAC 59.020 34.615 0.00 0.00 0.00 4.57
125 126 7.110043 TGATCATTTGCCATATTACTTTGCA 57.890 32.000 0.00 0.00 0.00 4.08
126 127 7.707893 ACTTGATCATTTGCCATATTACTTTGC 59.292 33.333 0.00 0.00 0.00 3.68
167 168 7.734942 TCAGTGGCTGTGATCATATATTAACA 58.265 34.615 0.00 0.00 32.61 2.41
254 256 5.468540 TCACTCGGAAAGAAGAGAAATCA 57.531 39.130 0.00 0.00 37.87 2.57
282 284 5.126067 GCTTATGAGTGGGAATCAAGCTAA 58.874 41.667 0.00 0.00 31.01 3.09
419 421 4.704540 CAGACCAGCCCAATATACACAAAA 59.295 41.667 0.00 0.00 0.00 2.44
461 463 4.295870 TCAATCAACGCGGACTCATATAC 58.704 43.478 12.47 0.00 0.00 1.47
468 470 3.666902 CGATTTTTCAATCAACGCGGACT 60.667 43.478 12.47 0.00 39.14 3.85
485 487 0.251916 TCGAATCAGTGGGCCGATTT 59.748 50.000 6.60 0.00 32.05 2.17
508 510 3.622163 TGAAATGCAGCAAAAACCACAAG 59.378 39.130 0.00 0.00 0.00 3.16
517 519 2.037901 TCAACCCTGAAATGCAGCAAA 58.962 42.857 0.00 0.00 43.50 3.68
858 3011 2.032528 CGGCAGCCAAGGAAGACA 59.967 61.111 13.30 0.00 0.00 3.41
972 3125 1.126846 GTTTCGAAGCCATCACTCACG 59.873 52.381 0.00 0.00 0.00 4.35
1215 3368 1.203038 AGTGCATTCCCAACCATGACA 60.203 47.619 0.00 0.00 0.00 3.58
1286 3439 3.140325 TCTCAATCACAACAAGGGTCC 57.860 47.619 0.00 0.00 0.00 4.46
1374 3527 1.288932 ACAAGGCCAGGGCAATTATCT 59.711 47.619 16.94 0.00 44.11 1.98
1385 3538 1.691196 TGAAAGAACCACAAGGCCAG 58.309 50.000 5.01 0.00 39.06 4.85
1394 3547 7.033185 GCTCAGTTTTAACTTTGAAAGAACCA 58.967 34.615 12.53 0.00 37.08 3.67
1423 3576 2.478292 TGACTTCCTCCCCCATAACTC 58.522 52.381 0.00 0.00 0.00 3.01
1704 3857 9.950680 TGAATTCAACAGAAGAAATTACTCAAC 57.049 29.630 5.45 0.00 0.00 3.18
1737 3891 7.376435 TCACATCAAACATGTACCATAAGTG 57.624 36.000 0.00 3.29 0.00 3.16
1785 3939 8.814038 AACTCAATTACTCCAAATATCTTGCT 57.186 30.769 0.00 0.00 0.00 3.91
1858 4014 1.111277 GAATGGAAATGGAACCCCCG 58.889 55.000 0.00 0.00 37.93 5.73
1957 4116 7.701445 AGTGATTAGCAAGCATCAATAACTTC 58.299 34.615 0.00 0.00 31.14 3.01
2118 4277 7.663081 GCCAGATCATCCTAAATTGACAGATAA 59.337 37.037 0.00 0.00 0.00 1.75
2162 4321 5.578005 AACCTTGCAGAATCATCATTGAG 57.422 39.130 0.00 0.00 34.73 3.02
2212 4371 5.892119 TGTCGTTCTAACTTCTCCTATCCAT 59.108 40.000 0.00 0.00 0.00 3.41
2219 4378 2.094130 CCCCTGTCGTTCTAACTTCTCC 60.094 54.545 0.00 0.00 0.00 3.71
2240 4399 2.395654 GATCACGGTTCGAAGGCTATC 58.604 52.381 0.00 0.00 0.00 2.08
2241 4400 1.068741 GGATCACGGTTCGAAGGCTAT 59.931 52.381 0.00 0.00 0.00 2.97
2320 4479 7.065216 ACATACAGACATTGAAGTTGATTCG 57.935 36.000 0.00 0.00 41.14 3.34
2343 4503 6.253727 CCACGTGAGAGATAACATACTTCAAC 59.746 42.308 19.30 0.00 0.00 3.18
2356 4516 7.275183 TCATAATTGAAATCCACGTGAGAGAT 58.725 34.615 19.30 8.62 0.00 2.75
2386 4546 5.025453 AGGGCAGGAAAAATGTATTGTCAT 58.975 37.500 0.00 0.00 0.00 3.06
2406 4566 4.280677 TGCACTTTCCACTTTTCATAAGGG 59.719 41.667 0.00 0.00 0.00 3.95
2407 4567 5.452078 TGCACTTTCCACTTTTCATAAGG 57.548 39.130 0.00 0.00 0.00 2.69
2421 4581 7.435192 ACATGTTTTTAGCTAAGTTGCACTTTC 59.565 33.333 6.24 1.66 39.51 2.62
2432 4592 7.608761 CCAAGTACCCTACATGTTTTTAGCTAA 59.391 37.037 2.30 0.86 0.00 3.09
2454 4614 2.165030 GGCAAGATGAACATCACCCAAG 59.835 50.000 15.63 2.18 40.22 3.61
2490 4650 9.698617 GTTCGTTCACCACTAAATCATAATAAC 57.301 33.333 0.00 0.00 0.00 1.89
2493 4653 7.915293 TGTTCGTTCACCACTAAATCATAAT 57.085 32.000 0.00 0.00 0.00 1.28
2494 4654 7.604545 TCATGTTCGTTCACCACTAAATCATAA 59.395 33.333 0.00 0.00 0.00 1.90
2499 4659 4.154195 GCTCATGTTCGTTCACCACTAAAT 59.846 41.667 0.00 0.00 0.00 1.40
2508 4668 3.261580 CACCTATGCTCATGTTCGTTCA 58.738 45.455 0.00 0.00 0.00 3.18
2509 4669 3.933155 CACCTATGCTCATGTTCGTTC 57.067 47.619 0.00 0.00 0.00 3.95
2522 4682 1.024271 CAACCGGGAATGCACCTATG 58.976 55.000 6.32 0.00 0.00 2.23
2523 4683 0.916086 TCAACCGGGAATGCACCTAT 59.084 50.000 6.32 0.00 0.00 2.57
2524 4684 0.251916 CTCAACCGGGAATGCACCTA 59.748 55.000 6.32 0.00 0.00 3.08
2525 4685 1.002134 CTCAACCGGGAATGCACCT 60.002 57.895 6.32 0.00 0.00 4.00
2526 4686 2.700773 GCTCAACCGGGAATGCACC 61.701 63.158 6.32 0.00 0.00 5.01
2527 4687 1.244019 AAGCTCAACCGGGAATGCAC 61.244 55.000 6.32 0.00 0.00 4.57
2528 4688 0.539438 AAAGCTCAACCGGGAATGCA 60.539 50.000 6.32 0.00 0.00 3.96
2529 4689 0.109132 CAAAGCTCAACCGGGAATGC 60.109 55.000 6.32 4.91 0.00 3.56
2530 4690 1.533625 TCAAAGCTCAACCGGGAATG 58.466 50.000 6.32 1.48 0.00 2.67
2531 4691 2.514458 ATCAAAGCTCAACCGGGAAT 57.486 45.000 6.32 0.00 0.00 3.01
2532 4692 2.286365 AATCAAAGCTCAACCGGGAA 57.714 45.000 6.32 0.00 0.00 3.97
2533 4693 3.644966 ATAATCAAAGCTCAACCGGGA 57.355 42.857 6.32 0.00 0.00 5.14
2534 4694 6.149474 CCTTATATAATCAAAGCTCAACCGGG 59.851 42.308 6.32 0.00 0.00 5.73
2535 4695 6.348540 GCCTTATATAATCAAAGCTCAACCGG 60.349 42.308 0.00 0.00 0.00 5.28
2536 4696 6.204688 TGCCTTATATAATCAAAGCTCAACCG 59.795 38.462 0.00 0.00 0.00 4.44
2537 4697 7.510549 TGCCTTATATAATCAAAGCTCAACC 57.489 36.000 0.00 0.00 0.00 3.77
2540 4700 9.658799 GAGTATGCCTTATATAATCAAAGCTCA 57.341 33.333 0.00 0.00 0.00 4.26
2541 4701 9.658799 TGAGTATGCCTTATATAATCAAAGCTC 57.341 33.333 0.00 7.35 33.67 4.09
2561 4721 8.976353 AAGTATTCACTTCTCACTGATGAGTAT 58.024 33.333 4.33 0.00 41.25 2.12
2562 4722 8.246871 CAAGTATTCACTTCTCACTGATGAGTA 58.753 37.037 4.33 0.00 43.80 2.59
2563 4723 7.095910 CAAGTATTCACTTCTCACTGATGAGT 58.904 38.462 4.33 0.00 43.80 3.41
2564 4724 7.095910 ACAAGTATTCACTTCTCACTGATGAG 58.904 38.462 0.00 0.00 43.30 2.90
2565 4725 6.997655 ACAAGTATTCACTTCTCACTGATGA 58.002 36.000 0.00 0.00 43.30 2.92
2566 4726 6.034363 CGACAAGTATTCACTTCTCACTGATG 59.966 42.308 0.00 0.00 43.30 3.07
2567 4727 6.071896 TCGACAAGTATTCACTTCTCACTGAT 60.072 38.462 0.00 0.00 43.30 2.90
2568 4728 5.240844 TCGACAAGTATTCACTTCTCACTGA 59.759 40.000 0.00 0.00 43.30 3.41
2569 4729 5.461526 TCGACAAGTATTCACTTCTCACTG 58.538 41.667 0.00 0.00 43.30 3.66
2570 4730 5.707242 TCGACAAGTATTCACTTCTCACT 57.293 39.130 0.00 0.00 43.30 3.41
2571 4731 6.093404 TGATCGACAAGTATTCACTTCTCAC 58.907 40.000 0.00 0.00 43.30 3.51
2572 4732 6.071896 ACTGATCGACAAGTATTCACTTCTCA 60.072 38.462 0.05 0.00 43.30 3.27
2573 4733 6.326375 ACTGATCGACAAGTATTCACTTCTC 58.674 40.000 0.05 0.00 43.30 2.87
2574 4734 6.274157 ACTGATCGACAAGTATTCACTTCT 57.726 37.500 0.05 0.00 43.30 2.85
2575 4735 6.561945 GACTGATCGACAAGTATTCACTTC 57.438 41.667 1.97 0.00 43.30 3.01
2591 4751 1.754226 AGCTTCTTCTCCCGACTGATC 59.246 52.381 0.00 0.00 0.00 2.92
2592 4752 1.859302 AGCTTCTTCTCCCGACTGAT 58.141 50.000 0.00 0.00 0.00 2.90
2593 4753 2.370349 CTAGCTTCTTCTCCCGACTGA 58.630 52.381 0.00 0.00 0.00 3.41
2594 4754 1.407258 CCTAGCTTCTTCTCCCGACTG 59.593 57.143 0.00 0.00 0.00 3.51
2595 4755 1.770294 CCTAGCTTCTTCTCCCGACT 58.230 55.000 0.00 0.00 0.00 4.18
2596 4756 0.103390 GCCTAGCTTCTTCTCCCGAC 59.897 60.000 0.00 0.00 0.00 4.79
2597 4757 0.324368 TGCCTAGCTTCTTCTCCCGA 60.324 55.000 0.00 0.00 0.00 5.14
2598 4758 0.755686 ATGCCTAGCTTCTTCTCCCG 59.244 55.000 0.00 0.00 0.00 5.14
2599 4759 1.488393 ACATGCCTAGCTTCTTCTCCC 59.512 52.381 0.00 0.00 0.00 4.30
2600 4760 2.801342 CGACATGCCTAGCTTCTTCTCC 60.801 54.545 0.00 0.00 0.00 3.71
2601 4761 2.099921 TCGACATGCCTAGCTTCTTCTC 59.900 50.000 0.00 0.00 0.00 2.87
2602 4762 2.103373 TCGACATGCCTAGCTTCTTCT 58.897 47.619 0.00 0.00 0.00 2.85
2603 4763 2.197577 GTCGACATGCCTAGCTTCTTC 58.802 52.381 11.55 0.00 0.00 2.87
2604 4764 1.469940 CGTCGACATGCCTAGCTTCTT 60.470 52.381 17.16 0.00 0.00 2.52
2605 4765 0.101399 CGTCGACATGCCTAGCTTCT 59.899 55.000 17.16 0.00 0.00 2.85
2606 4766 0.872021 CCGTCGACATGCCTAGCTTC 60.872 60.000 17.16 0.00 0.00 3.86
2607 4767 1.141881 CCGTCGACATGCCTAGCTT 59.858 57.895 17.16 0.00 0.00 3.74
2608 4768 1.109920 ATCCGTCGACATGCCTAGCT 61.110 55.000 17.16 0.00 0.00 3.32
2609 4769 0.941463 CATCCGTCGACATGCCTAGC 60.941 60.000 17.16 0.00 0.00 3.42
2610 4770 0.941463 GCATCCGTCGACATGCCTAG 60.941 60.000 23.48 3.85 39.70 3.02
2611 4771 1.067416 GCATCCGTCGACATGCCTA 59.933 57.895 23.48 1.16 39.70 3.93
2612 4772 2.202932 GCATCCGTCGACATGCCT 60.203 61.111 23.48 0.00 39.70 4.75
2613 4773 2.511373 TGCATCCGTCGACATGCC 60.511 61.111 28.10 16.10 44.15 4.40
2614 4774 2.528743 CCTGCATCCGTCGACATGC 61.529 63.158 25.88 25.88 44.87 4.06
2615 4775 1.884464 CCCTGCATCCGTCGACATG 60.884 63.158 17.16 13.49 0.00 3.21
2616 4776 1.613317 TTCCCTGCATCCGTCGACAT 61.613 55.000 17.16 0.00 0.00 3.06
2617 4777 2.225791 CTTCCCTGCATCCGTCGACA 62.226 60.000 17.16 0.00 0.00 4.35
2618 4778 1.519455 CTTCCCTGCATCCGTCGAC 60.519 63.158 5.18 5.18 0.00 4.20
2619 4779 1.254975 TTCTTCCCTGCATCCGTCGA 61.255 55.000 0.00 0.00 0.00 4.20
2620 4780 0.807667 CTTCTTCCCTGCATCCGTCG 60.808 60.000 0.00 0.00 0.00 5.12
2621 4781 0.462759 CCTTCTTCCCTGCATCCGTC 60.463 60.000 0.00 0.00 0.00 4.79
2622 4782 1.201429 ACCTTCTTCCCTGCATCCGT 61.201 55.000 0.00 0.00 0.00 4.69
2623 4783 0.745845 CACCTTCTTCCCTGCATCCG 60.746 60.000 0.00 0.00 0.00 4.18
2624 4784 0.329596 ACACCTTCTTCCCTGCATCC 59.670 55.000 0.00 0.00 0.00 3.51
2625 4785 2.633488 GTACACCTTCTTCCCTGCATC 58.367 52.381 0.00 0.00 0.00 3.91
2626 4786 1.066143 CGTACACCTTCTTCCCTGCAT 60.066 52.381 0.00 0.00 0.00 3.96
2627 4787 0.320374 CGTACACCTTCTTCCCTGCA 59.680 55.000 0.00 0.00 0.00 4.41
2628 4788 0.320697 ACGTACACCTTCTTCCCTGC 59.679 55.000 0.00 0.00 0.00 4.85
2629 4789 2.224209 ACAACGTACACCTTCTTCCCTG 60.224 50.000 0.00 0.00 0.00 4.45
2630 4790 2.044758 ACAACGTACACCTTCTTCCCT 58.955 47.619 0.00 0.00 0.00 4.20
2631 4791 2.538512 ACAACGTACACCTTCTTCCC 57.461 50.000 0.00 0.00 0.00 3.97
2632 4792 2.032290 GCAACAACGTACACCTTCTTCC 60.032 50.000 0.00 0.00 0.00 3.46
2633 4793 2.610374 TGCAACAACGTACACCTTCTTC 59.390 45.455 0.00 0.00 0.00 2.87
2634 4794 2.634600 TGCAACAACGTACACCTTCTT 58.365 42.857 0.00 0.00 0.00 2.52
2635 4795 2.319136 TGCAACAACGTACACCTTCT 57.681 45.000 0.00 0.00 0.00 2.85
2636 4796 3.296628 CATTGCAACAACGTACACCTTC 58.703 45.455 0.00 0.00 0.00 3.46
2637 4797 2.034053 CCATTGCAACAACGTACACCTT 59.966 45.455 0.00 0.00 0.00 3.50
2638 4798 1.606668 CCATTGCAACAACGTACACCT 59.393 47.619 0.00 0.00 0.00 4.00
2639 4799 1.335496 ACCATTGCAACAACGTACACC 59.665 47.619 0.00 0.00 0.00 4.16
2640 4800 2.032302 TCACCATTGCAACAACGTACAC 59.968 45.455 0.00 0.00 0.00 2.90
2641 4801 2.289565 TCACCATTGCAACAACGTACA 58.710 42.857 0.00 0.00 0.00 2.90
2642 4802 3.552604 ATCACCATTGCAACAACGTAC 57.447 42.857 0.00 0.00 0.00 3.67
2643 4803 3.364465 CGAATCACCATTGCAACAACGTA 60.364 43.478 0.00 0.00 0.00 3.57
2644 4804 2.604373 CGAATCACCATTGCAACAACGT 60.604 45.455 0.00 0.00 0.00 3.99
2645 4805 1.978097 CGAATCACCATTGCAACAACG 59.022 47.619 0.00 0.00 0.00 4.10
2646 4806 2.327568 CCGAATCACCATTGCAACAAC 58.672 47.619 0.00 0.00 0.00 3.32
2647 4807 1.271934 CCCGAATCACCATTGCAACAA 59.728 47.619 0.00 0.00 0.00 2.83
2648 4808 0.887247 CCCGAATCACCATTGCAACA 59.113 50.000 0.00 0.00 0.00 3.33
2649 4809 0.887933 ACCCGAATCACCATTGCAAC 59.112 50.000 0.00 0.00 0.00 4.17
2650 4810 0.887247 CACCCGAATCACCATTGCAA 59.113 50.000 0.00 0.00 0.00 4.08
2651 4811 0.037447 TCACCCGAATCACCATTGCA 59.963 50.000 0.00 0.00 0.00 4.08
2652 4812 1.334869 GATCACCCGAATCACCATTGC 59.665 52.381 0.00 0.00 0.00 3.56
2653 4813 2.923121 AGATCACCCGAATCACCATTG 58.077 47.619 0.00 0.00 0.00 2.82
2654 4814 3.454447 TGTAGATCACCCGAATCACCATT 59.546 43.478 0.00 0.00 0.00 3.16
2655 4815 3.038280 TGTAGATCACCCGAATCACCAT 58.962 45.455 0.00 0.00 0.00 3.55
2656 4816 2.167693 GTGTAGATCACCCGAATCACCA 59.832 50.000 0.00 0.00 40.84 4.17
2657 4817 2.822764 GTGTAGATCACCCGAATCACC 58.177 52.381 0.00 0.00 40.84 4.02
2667 4827 2.159156 TGTACATGCCGGTGTAGATCAC 60.159 50.000 1.90 0.00 45.47 3.06
2668 4828 2.104170 TGTACATGCCGGTGTAGATCA 58.896 47.619 1.90 0.00 35.40 2.92
2669 4829 2.882927 TGTACATGCCGGTGTAGATC 57.117 50.000 1.90 0.00 35.40 2.75
2670 4830 2.288213 CGATGTACATGCCGGTGTAGAT 60.288 50.000 14.43 12.90 40.15 1.98
2671 4831 1.066454 CGATGTACATGCCGGTGTAGA 59.934 52.381 14.43 3.68 35.40 2.59
2672 4832 1.202371 ACGATGTACATGCCGGTGTAG 60.202 52.381 14.43 0.00 35.40 2.74
2673 4833 0.818938 ACGATGTACATGCCGGTGTA 59.181 50.000 14.43 1.32 33.62 2.90
2674 4834 0.459585 GACGATGTACATGCCGGTGT 60.460 55.000 14.43 2.51 36.13 4.16
2675 4835 0.179111 AGACGATGTACATGCCGGTG 60.179 55.000 14.43 0.00 0.00 4.94
2676 4836 0.102481 GAGACGATGTACATGCCGGT 59.898 55.000 14.43 5.65 0.00 5.28
2677 4837 0.597637 GGAGACGATGTACATGCCGG 60.598 60.000 14.43 0.00 0.00 6.13
2678 4838 0.102300 TGGAGACGATGTACATGCCG 59.898 55.000 14.43 13.96 0.00 5.69
2679 4839 2.205074 CTTGGAGACGATGTACATGCC 58.795 52.381 14.43 7.15 0.00 4.40
2680 4840 2.205074 CCTTGGAGACGATGTACATGC 58.795 52.381 14.43 4.24 0.00 4.06
2681 4841 2.205074 GCCTTGGAGACGATGTACATG 58.795 52.381 14.43 8.31 0.00 3.21
2682 4842 1.202417 CGCCTTGGAGACGATGTACAT 60.202 52.381 8.43 8.43 0.00 2.29
2683 4843 0.172578 CGCCTTGGAGACGATGTACA 59.827 55.000 0.00 0.00 0.00 2.90
2684 4844 0.527817 CCGCCTTGGAGACGATGTAC 60.528 60.000 0.00 0.00 42.00 2.90
2685 4845 1.813859 CCGCCTTGGAGACGATGTA 59.186 57.895 0.00 0.00 42.00 2.29
2686 4846 2.579201 CCGCCTTGGAGACGATGT 59.421 61.111 0.00 0.00 42.00 3.06
2687 4847 2.892425 GCCGCCTTGGAGACGATG 60.892 66.667 0.00 0.00 42.00 3.84
2688 4848 4.162690 GGCCGCCTTGGAGACGAT 62.163 66.667 0.71 0.00 42.00 3.73
2690 4850 4.394712 AAGGCCGCCTTGGAGACG 62.395 66.667 24.27 0.00 42.96 4.18
2691 4851 2.436824 GAAGGCCGCCTTGGAGAC 60.437 66.667 29.60 10.65 44.82 3.36
2692 4852 4.082523 CGAAGGCCGCCTTGGAGA 62.083 66.667 29.60 0.00 44.82 3.71
2693 4853 4.082523 TCGAAGGCCGCCTTGGAG 62.083 66.667 29.60 18.76 44.82 3.86
2694 4854 4.388499 GTCGAAGGCCGCCTTGGA 62.388 66.667 29.60 28.50 44.82 3.53
2704 4864 4.812476 TCATGCCGCCGTCGAAGG 62.812 66.667 13.59 13.59 38.10 3.46
2705 4865 0.874175 TATTCATGCCGCCGTCGAAG 60.874 55.000 0.00 0.00 38.10 3.79
2706 4866 1.142097 TATTCATGCCGCCGTCGAA 59.858 52.632 0.00 0.00 38.10 3.71
2707 4867 1.590525 GTATTCATGCCGCCGTCGA 60.591 57.895 0.00 0.00 38.10 4.20
2708 4868 2.594962 GGTATTCATGCCGCCGTCG 61.595 63.158 0.00 0.00 0.00 5.12
2709 4869 0.814010 AAGGTATTCATGCCGCCGTC 60.814 55.000 0.00 0.00 37.65 4.79
2710 4870 0.393808 AAAGGTATTCATGCCGCCGT 60.394 50.000 0.00 0.00 37.65 5.68
2711 4871 0.029300 CAAAGGTATTCATGCCGCCG 59.971 55.000 0.00 0.00 37.65 6.46
2712 4872 1.102978 ACAAAGGTATTCATGCCGCC 58.897 50.000 0.00 0.00 37.65 6.13
2713 4873 1.472480 ACACAAAGGTATTCATGCCGC 59.528 47.619 0.00 0.00 37.65 6.53
2714 4874 3.190327 TGAACACAAAGGTATTCATGCCG 59.810 43.478 0.00 0.00 35.61 5.69
2715 4875 4.782019 TGAACACAAAGGTATTCATGCC 57.218 40.909 0.00 0.00 35.61 4.40
2719 4879 7.606456 GGTAGAAGATGAACACAAAGGTATTCA 59.394 37.037 0.00 0.00 43.94 2.57
2720 4880 7.201530 CGGTAGAAGATGAACACAAAGGTATTC 60.202 40.741 0.00 0.00 31.02 1.75
2721 4881 6.594159 CGGTAGAAGATGAACACAAAGGTATT 59.406 38.462 0.00 0.00 0.00 1.89
2722 4882 6.106673 CGGTAGAAGATGAACACAAAGGTAT 58.893 40.000 0.00 0.00 0.00 2.73
2723 4883 5.475719 CGGTAGAAGATGAACACAAAGGTA 58.524 41.667 0.00 0.00 0.00 3.08
2724 4884 4.315803 CGGTAGAAGATGAACACAAAGGT 58.684 43.478 0.00 0.00 0.00 3.50
2725 4885 3.125316 GCGGTAGAAGATGAACACAAAGG 59.875 47.826 0.00 0.00 0.00 3.11
2726 4886 3.125316 GGCGGTAGAAGATGAACACAAAG 59.875 47.826 0.00 0.00 0.00 2.77
2727 4887 3.071479 GGCGGTAGAAGATGAACACAAA 58.929 45.455 0.00 0.00 0.00 2.83
2728 4888 2.037902 TGGCGGTAGAAGATGAACACAA 59.962 45.455 0.00 0.00 0.00 3.33
2729 4889 1.621317 TGGCGGTAGAAGATGAACACA 59.379 47.619 0.00 0.00 0.00 3.72
2730 4890 2.271800 CTGGCGGTAGAAGATGAACAC 58.728 52.381 0.00 0.00 0.00 3.32
2731 4891 1.207089 CCTGGCGGTAGAAGATGAACA 59.793 52.381 0.00 0.00 0.00 3.18
2732 4892 1.941325 CCTGGCGGTAGAAGATGAAC 58.059 55.000 0.00 0.00 0.00 3.18
2733 4893 0.178068 GCCTGGCGGTAGAAGATGAA 59.822 55.000 1.35 0.00 0.00 2.57
2734 4894 0.975556 TGCCTGGCGGTAGAAGATGA 60.976 55.000 14.98 0.00 0.00 2.92
2735 4895 0.531532 CTGCCTGGCGGTAGAAGATG 60.532 60.000 19.55 0.00 44.96 2.90
2736 4896 1.826024 CTGCCTGGCGGTAGAAGAT 59.174 57.895 19.55 0.00 44.96 2.40
2737 4897 3.019003 GCTGCCTGGCGGTAGAAGA 62.019 63.158 27.25 0.00 44.96 2.87
2738 4898 2.512515 GCTGCCTGGCGGTAGAAG 60.513 66.667 27.25 12.77 44.96 2.85
2739 4899 4.096003 GGCTGCCTGGCGGTAGAA 62.096 66.667 27.25 1.40 44.96 2.10
2751 4911 2.794820 AAGAGAAGACTGGCGGCTGC 62.795 60.000 9.72 9.72 41.71 5.25
2752 4912 1.018226 CAAGAGAAGACTGGCGGCTG 61.018 60.000 14.42 14.42 0.00 4.85
2753 4913 1.294780 CAAGAGAAGACTGGCGGCT 59.705 57.895 11.43 0.00 0.00 5.52
2754 4914 2.394563 GCAAGAGAAGACTGGCGGC 61.395 63.158 0.00 0.00 0.00 6.53
2755 4915 0.532573 TAGCAAGAGAAGACTGGCGG 59.467 55.000 0.00 0.00 41.27 6.13
2756 4916 1.634702 GTAGCAAGAGAAGACTGGCG 58.365 55.000 0.00 0.00 41.27 5.69
2757 4917 1.406205 GGGTAGCAAGAGAAGACTGGC 60.406 57.143 0.00 0.00 37.12 4.85
2758 4918 1.208293 GGGGTAGCAAGAGAAGACTGG 59.792 57.143 0.00 0.00 0.00 4.00
2759 4919 2.167487 GAGGGGTAGCAAGAGAAGACTG 59.833 54.545 0.00 0.00 0.00 3.51
2760 4920 2.462723 GAGGGGTAGCAAGAGAAGACT 58.537 52.381 0.00 0.00 0.00 3.24
2761 4921 1.135333 CGAGGGGTAGCAAGAGAAGAC 59.865 57.143 0.00 0.00 0.00 3.01
2762 4922 1.475403 CGAGGGGTAGCAAGAGAAGA 58.525 55.000 0.00 0.00 0.00 2.87
2763 4923 0.179097 GCGAGGGGTAGCAAGAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
2764 4924 1.614241 GGCGAGGGGTAGCAAGAGAA 61.614 60.000 0.00 0.00 34.54 2.87
2765 4925 2.058595 GGCGAGGGGTAGCAAGAGA 61.059 63.158 0.00 0.00 34.54 3.10
2766 4926 1.690219 ATGGCGAGGGGTAGCAAGAG 61.690 60.000 0.00 0.00 34.54 2.85
2767 4927 1.686325 GATGGCGAGGGGTAGCAAGA 61.686 60.000 0.00 0.00 34.54 3.02
2768 4928 1.227674 GATGGCGAGGGGTAGCAAG 60.228 63.158 0.00 0.00 34.54 4.01
2769 4929 1.271840 AAGATGGCGAGGGGTAGCAA 61.272 55.000 0.00 0.00 34.54 3.91
2770 4930 1.686325 GAAGATGGCGAGGGGTAGCA 61.686 60.000 0.00 0.00 34.54 3.49
2771 4931 1.069935 GAAGATGGCGAGGGGTAGC 59.930 63.158 0.00 0.00 0.00 3.58
2772 4932 0.760945 AGGAAGATGGCGAGGGGTAG 60.761 60.000 0.00 0.00 0.00 3.18
2773 4933 0.326238 AAGGAAGATGGCGAGGGGTA 60.326 55.000 0.00 0.00 0.00 3.69
2774 4934 1.616628 AAGGAAGATGGCGAGGGGT 60.617 57.895 0.00 0.00 0.00 4.95
2775 4935 1.153086 CAAGGAAGATGGCGAGGGG 60.153 63.158 0.00 0.00 0.00 4.79
2776 4936 0.253044 TTCAAGGAAGATGGCGAGGG 59.747 55.000 0.00 0.00 0.00 4.30
2777 4937 2.012673 CTTTCAAGGAAGATGGCGAGG 58.987 52.381 0.00 0.00 0.00 4.63
2815 4975 9.440773 TGTCTTGATCGAGTAACTAAGTAACTA 57.559 33.333 9.87 0.00 0.00 2.24
2816 4976 8.332996 TGTCTTGATCGAGTAACTAAGTAACT 57.667 34.615 9.87 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.