Multiple sequence alignment - TraesCS6A01G039300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G039300 chr6A 100.000 2876 0 0 1 2876 20311329 20308454 0.000000e+00 5312.0
1 TraesCS6A01G039300 chr6A 80.968 1240 218 11 874 2107 20522303 20521076 0.000000e+00 966.0
2 TraesCS6A01G039300 chr6A 80.142 1269 189 39 875 2126 20339938 20338716 0.000000e+00 889.0
3 TraesCS6A01G039300 chr6A 97.115 104 3 0 2773 2876 20303707 20303604 2.950000e-40 176.0
4 TraesCS6A01G039300 chr6D 94.654 1908 89 5 874 2772 20312191 20310288 0.000000e+00 2946.0
5 TraesCS6A01G039300 chr6D 80.535 1233 226 10 880 2107 20602559 20601336 0.000000e+00 935.0
6 TraesCS6A01G039300 chr6D 81.356 649 84 16 26 644 262974664 262974023 7.160000e-136 494.0
7 TraesCS6A01G039300 chr6D 79.791 574 92 9 94 648 351597603 351598171 2.080000e-106 396.0
8 TraesCS6A01G039300 chrUn 93.451 1924 94 16 874 2772 273854841 273856757 0.000000e+00 2826.0
9 TraesCS6A01G039300 chr6B 93.243 1924 97 16 874 2772 34341400 34339485 0.000000e+00 2802.0
10 TraesCS6A01G039300 chr6B 81.550 1252 196 20 875 2111 34685314 34684083 0.000000e+00 1000.0
11 TraesCS6A01G039300 chr6B 80.723 1245 218 15 874 2107 35529306 35528073 0.000000e+00 950.0
12 TraesCS6A01G039300 chr7B 79.425 1147 215 16 874 2008 744570683 744569546 0.000000e+00 791.0
13 TraesCS6A01G039300 chr7B 84.575 577 79 5 5 576 454179471 454180042 5.380000e-157 564.0
14 TraesCS6A01G039300 chr7B 86.842 76 10 0 797 872 12289821 12289896 5.110000e-13 86.1
15 TraesCS6A01G039300 chr3D 85.274 584 70 11 3 576 481677607 481677030 3.190000e-164 588.0
16 TraesCS6A01G039300 chr3D 84.957 585 67 16 3 576 526601018 526600444 8.940000e-160 573.0
17 TraesCS6A01G039300 chr4B 84.880 582 81 4 1 576 454504381 454503801 5.340000e-162 580.0
18 TraesCS6A01G039300 chr4B 80.000 675 96 18 3 648 497288752 497288088 2.020000e-126 462.0
19 TraesCS6A01G039300 chr2D 84.720 589 74 9 3 577 541442507 541443093 2.490000e-160 575.0
20 TraesCS6A01G039300 chr2D 83.030 660 83 12 5 642 198701196 198701848 3.210000e-159 571.0
21 TraesCS6A01G039300 chr2D 80.208 672 97 12 1 645 63903761 63903099 3.350000e-129 472.0
22 TraesCS6A01G039300 chr5D 84.589 584 77 6 1 576 213166052 213165474 4.160000e-158 568.0
23 TraesCS6A01G039300 chr5D 78.723 470 64 19 206 648 249275388 249275848 6.070000e-72 281.0
24 TraesCS6A01G039300 chr5D 95.192 104 5 0 2773 2876 106942159 106942056 6.380000e-37 165.0
25 TraesCS6A01G039300 chr5B 82.576 660 97 7 1 644 276896630 276895973 1.500000e-157 566.0
26 TraesCS6A01G039300 chr3A 84.444 585 79 6 1 576 609558523 609557942 1.500000e-157 566.0
27 TraesCS6A01G039300 chr4D 81.720 651 76 15 25 648 423238142 423238776 1.190000e-138 503.0
28 TraesCS6A01G039300 chr4D 76.491 285 44 7 381 644 88706576 88706858 1.800000e-27 134.0
29 TraesCS6A01G039300 chr2A 79.669 664 108 15 1 644 727725612 727724956 1.210000e-123 453.0
30 TraesCS6A01G039300 chr1B 77.463 670 111 31 2 644 312861312 312861968 5.860000e-97 364.0
31 TraesCS6A01G039300 chr3B 94.737 57 3 0 816 872 488348810 488348866 3.950000e-14 89.8
32 TraesCS6A01G039300 chr1A 93.103 58 4 0 815 872 517331068 517331125 5.110000e-13 86.1
33 TraesCS6A01G039300 chr5A 95.833 48 2 0 825 872 661275322 661275275 8.540000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G039300 chr6A 20308454 20311329 2875 True 5312 5312 100.000 1 2876 1 chr6A.!!$R2 2875
1 TraesCS6A01G039300 chr6A 20521076 20522303 1227 True 966 966 80.968 874 2107 1 chr6A.!!$R4 1233
2 TraesCS6A01G039300 chr6A 20338716 20339938 1222 True 889 889 80.142 875 2126 1 chr6A.!!$R3 1251
3 TraesCS6A01G039300 chr6D 20310288 20312191 1903 True 2946 2946 94.654 874 2772 1 chr6D.!!$R1 1898
4 TraesCS6A01G039300 chr6D 20601336 20602559 1223 True 935 935 80.535 880 2107 1 chr6D.!!$R2 1227
5 TraesCS6A01G039300 chr6D 262974023 262974664 641 True 494 494 81.356 26 644 1 chr6D.!!$R3 618
6 TraesCS6A01G039300 chr6D 351597603 351598171 568 False 396 396 79.791 94 648 1 chr6D.!!$F1 554
7 TraesCS6A01G039300 chrUn 273854841 273856757 1916 False 2826 2826 93.451 874 2772 1 chrUn.!!$F1 1898
8 TraesCS6A01G039300 chr6B 34339485 34341400 1915 True 2802 2802 93.243 874 2772 1 chr6B.!!$R1 1898
9 TraesCS6A01G039300 chr6B 34684083 34685314 1231 True 1000 1000 81.550 875 2111 1 chr6B.!!$R2 1236
10 TraesCS6A01G039300 chr6B 35528073 35529306 1233 True 950 950 80.723 874 2107 1 chr6B.!!$R3 1233
11 TraesCS6A01G039300 chr7B 744569546 744570683 1137 True 791 791 79.425 874 2008 1 chr7B.!!$R1 1134
12 TraesCS6A01G039300 chr7B 454179471 454180042 571 False 564 564 84.575 5 576 1 chr7B.!!$F2 571
13 TraesCS6A01G039300 chr3D 481677030 481677607 577 True 588 588 85.274 3 576 1 chr3D.!!$R1 573
14 TraesCS6A01G039300 chr3D 526600444 526601018 574 True 573 573 84.957 3 576 1 chr3D.!!$R2 573
15 TraesCS6A01G039300 chr4B 454503801 454504381 580 True 580 580 84.880 1 576 1 chr4B.!!$R1 575
16 TraesCS6A01G039300 chr4B 497288088 497288752 664 True 462 462 80.000 3 648 1 chr4B.!!$R2 645
17 TraesCS6A01G039300 chr2D 541442507 541443093 586 False 575 575 84.720 3 577 1 chr2D.!!$F2 574
18 TraesCS6A01G039300 chr2D 198701196 198701848 652 False 571 571 83.030 5 642 1 chr2D.!!$F1 637
19 TraesCS6A01G039300 chr2D 63903099 63903761 662 True 472 472 80.208 1 645 1 chr2D.!!$R1 644
20 TraesCS6A01G039300 chr5D 213165474 213166052 578 True 568 568 84.589 1 576 1 chr5D.!!$R2 575
21 TraesCS6A01G039300 chr5B 276895973 276896630 657 True 566 566 82.576 1 644 1 chr5B.!!$R1 643
22 TraesCS6A01G039300 chr3A 609557942 609558523 581 True 566 566 84.444 1 576 1 chr3A.!!$R1 575
23 TraesCS6A01G039300 chr4D 423238142 423238776 634 False 503 503 81.720 25 648 1 chr4D.!!$F2 623
24 TraesCS6A01G039300 chr2A 727724956 727725612 656 True 453 453 79.669 1 644 1 chr2A.!!$R1 643
25 TraesCS6A01G039300 chr1B 312861312 312861968 656 False 364 364 77.463 2 644 1 chr1B.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 512 0.177141 TTAACCGCCGAGGGATTGAG 59.823 55.0 0.0 0.0 46.96 3.02 F
863 919 0.322456 TCGGCAATGACCTTTCCTGG 60.322 55.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1563 0.108804 CCACTCTGCCGTTACGACAT 60.109 55.0 6.24 0.0 0.0 3.06 R
2824 2930 0.107654 GCACGCCAAACTCTATCCCT 60.108 55.0 0.00 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 109 8.762645 TCTACATCATGTCATCTTTCTTAAGGT 58.237 33.333 1.85 0.00 32.02 3.50
97 114 8.777865 TCATGTCATCTTTCTTAAGGTGTTAG 57.222 34.615 1.85 0.00 42.12 2.34
134 153 7.445121 TGAACTTAATACTCTAGATGCATGGG 58.555 38.462 2.46 0.00 0.00 4.00
150 169 1.600916 GGGGGATAGCGGTTGATGC 60.601 63.158 0.00 0.00 0.00 3.91
171 190 8.098912 TGATGCGTGGAGTAATAGTAGTAGATA 58.901 37.037 0.00 0.00 0.00 1.98
204 223 1.270678 GGCCTACTTGTCTTGGACGTT 60.271 52.381 0.00 0.00 34.95 3.99
207 226 4.251268 GCCTACTTGTCTTGGACGTTATT 58.749 43.478 0.00 0.00 34.95 1.40
217 237 9.923143 TTGTCTTGGACGTTATTCCTATATATG 57.077 33.333 0.00 0.00 36.51 1.78
272 294 5.938322 TCGCTTTTCTATCAATTGTCAACC 58.062 37.500 5.13 0.00 0.00 3.77
275 297 6.808212 CGCTTTTCTATCAATTGTCAACCAAT 59.192 34.615 5.13 0.00 45.81 3.16
308 332 4.035208 CCCACCGTATGCTATTTTCAAGAC 59.965 45.833 0.00 0.00 0.00 3.01
317 341 5.012239 TGCTATTTTCAAGACAGAAGCCAT 58.988 37.500 0.00 0.00 0.00 4.40
343 367 1.716028 AAACTATGGCCCCCGGATCC 61.716 60.000 0.73 0.00 0.00 3.36
358 383 6.546034 CCCCCGGATCCATTTTTATCATATAC 59.454 42.308 13.41 0.00 0.00 1.47
474 512 0.177141 TTAACCGCCGAGGGATTGAG 59.823 55.000 0.00 0.00 46.96 3.02
476 514 1.961180 AACCGCCGAGGGATTGAGAG 61.961 60.000 0.00 0.00 46.96 3.20
494 534 2.345991 CCCCTTCTTCGCGTTGGA 59.654 61.111 5.77 0.00 0.00 3.53
522 562 9.672086 GCAAGTATTTGTTATTTTGTGTGTAGA 57.328 29.630 0.00 0.00 36.65 2.59
560 600 4.591498 TGTTGCTTGGTTCTCCTACTAGAA 59.409 41.667 0.00 0.00 33.10 2.10
602 658 9.190317 ACTTATCTCTACTGTACAACATCATCA 57.810 33.333 0.00 0.00 0.00 3.07
646 702 0.731417 GCAGCTCACAAGTAGCATGG 59.269 55.000 0.00 0.00 42.62 3.66
647 703 1.676916 GCAGCTCACAAGTAGCATGGA 60.677 52.381 0.00 0.00 42.62 3.41
648 704 2.915349 CAGCTCACAAGTAGCATGGAT 58.085 47.619 0.00 0.00 42.62 3.41
649 705 2.612672 CAGCTCACAAGTAGCATGGATG 59.387 50.000 0.00 0.00 42.62 3.51
664 720 5.265350 CATGGATGCATGTAACAATTCCA 57.735 39.130 18.32 2.53 36.32 3.53
665 721 5.849510 CATGGATGCATGTAACAATTCCAT 58.150 37.500 18.32 5.27 41.86 3.41
666 722 5.936187 TGGATGCATGTAACAATTCCATT 57.064 34.783 2.46 0.00 0.00 3.16
667 723 6.297080 TGGATGCATGTAACAATTCCATTT 57.703 33.333 2.46 0.00 0.00 2.32
668 724 6.709281 TGGATGCATGTAACAATTCCATTTT 58.291 32.000 2.46 0.00 0.00 1.82
669 725 7.166851 TGGATGCATGTAACAATTCCATTTTT 58.833 30.769 2.46 0.00 0.00 1.94
700 756 7.543359 TCAATCTTTGAATCCATTGTTTCCT 57.457 32.000 0.00 0.00 36.59 3.36
701 757 7.965718 TCAATCTTTGAATCCATTGTTTCCTT 58.034 30.769 0.00 0.00 36.59 3.36
702 758 7.874016 TCAATCTTTGAATCCATTGTTTCCTTG 59.126 33.333 0.00 0.00 36.59 3.61
703 759 6.100404 TCTTTGAATCCATTGTTTCCTTGG 57.900 37.500 0.00 0.00 0.00 3.61
704 760 4.888326 TTGAATCCATTGTTTCCTTGGG 57.112 40.909 0.00 0.00 0.00 4.12
705 761 4.125124 TGAATCCATTGTTTCCTTGGGA 57.875 40.909 0.00 0.00 0.00 4.37
706 762 4.487804 TGAATCCATTGTTTCCTTGGGAA 58.512 39.130 0.00 0.00 40.27 3.97
707 763 5.092968 TGAATCCATTGTTTCCTTGGGAAT 58.907 37.500 0.00 0.00 41.71 3.01
708 764 5.187576 TGAATCCATTGTTTCCTTGGGAATC 59.812 40.000 0.00 0.73 41.71 2.52
709 765 4.125124 TCCATTGTTTCCTTGGGAATCA 57.875 40.909 6.11 6.11 41.71 2.57
710 766 3.831911 TCCATTGTTTCCTTGGGAATCAC 59.168 43.478 8.92 2.86 41.71 3.06
711 767 3.834231 CCATTGTTTCCTTGGGAATCACT 59.166 43.478 8.92 3.07 41.71 3.41
712 768 5.016173 CCATTGTTTCCTTGGGAATCACTA 58.984 41.667 8.92 0.41 41.71 2.74
713 769 5.126061 CCATTGTTTCCTTGGGAATCACTAG 59.874 44.000 8.92 0.00 41.71 2.57
714 770 4.301072 TGTTTCCTTGGGAATCACTAGG 57.699 45.455 6.66 6.66 41.71 3.02
715 771 3.655777 TGTTTCCTTGGGAATCACTAGGT 59.344 43.478 12.47 0.00 41.71 3.08
716 772 4.847512 TGTTTCCTTGGGAATCACTAGGTA 59.152 41.667 12.47 0.46 41.71 3.08
717 773 5.491078 TGTTTCCTTGGGAATCACTAGGTAT 59.509 40.000 12.47 0.00 41.71 2.73
718 774 5.888982 TTCCTTGGGAATCACTAGGTATC 57.111 43.478 12.47 0.00 36.71 2.24
719 775 4.890988 TCCTTGGGAATCACTAGGTATCA 58.109 43.478 12.47 0.00 0.00 2.15
720 776 5.476983 TCCTTGGGAATCACTAGGTATCAT 58.523 41.667 12.47 0.00 0.00 2.45
721 777 6.630131 TCCTTGGGAATCACTAGGTATCATA 58.370 40.000 12.47 0.00 0.00 2.15
722 778 6.726299 TCCTTGGGAATCACTAGGTATCATAG 59.274 42.308 12.47 0.00 0.00 2.23
723 779 6.070538 CCTTGGGAATCACTAGGTATCATAGG 60.071 46.154 4.79 0.00 0.00 2.57
724 780 5.977533 TGGGAATCACTAGGTATCATAGGT 58.022 41.667 0.00 0.00 0.00 3.08
725 781 6.390504 TGGGAATCACTAGGTATCATAGGTT 58.609 40.000 0.00 0.00 0.00 3.50
726 782 6.497259 TGGGAATCACTAGGTATCATAGGTTC 59.503 42.308 0.00 0.00 0.00 3.62
727 783 6.726764 GGGAATCACTAGGTATCATAGGTTCT 59.273 42.308 0.00 0.00 0.00 3.01
728 784 7.235812 GGGAATCACTAGGTATCATAGGTTCTT 59.764 40.741 0.00 0.00 0.00 2.52
729 785 8.091449 GGAATCACTAGGTATCATAGGTTCTTG 58.909 40.741 0.00 0.00 0.00 3.02
730 786 6.978674 TCACTAGGTATCATAGGTTCTTGG 57.021 41.667 0.00 0.00 0.00 3.61
731 787 5.304614 TCACTAGGTATCATAGGTTCTTGGC 59.695 44.000 0.00 0.00 0.00 4.52
732 788 5.305644 CACTAGGTATCATAGGTTCTTGGCT 59.694 44.000 0.00 0.00 0.00 4.75
733 789 6.493802 CACTAGGTATCATAGGTTCTTGGCTA 59.506 42.308 0.00 0.00 0.00 3.93
734 790 7.015292 CACTAGGTATCATAGGTTCTTGGCTAA 59.985 40.741 0.00 0.00 0.00 3.09
735 791 6.824958 AGGTATCATAGGTTCTTGGCTAAA 57.175 37.500 0.00 0.00 0.00 1.85
736 792 6.592870 AGGTATCATAGGTTCTTGGCTAAAC 58.407 40.000 0.00 0.00 0.00 2.01
737 793 6.387220 AGGTATCATAGGTTCTTGGCTAAACT 59.613 38.462 0.00 0.00 0.00 2.66
738 794 7.054751 GGTATCATAGGTTCTTGGCTAAACTT 58.945 38.462 0.00 0.00 0.00 2.66
739 795 7.556635 GGTATCATAGGTTCTTGGCTAAACTTT 59.443 37.037 0.00 0.00 0.00 2.66
740 796 8.957466 GTATCATAGGTTCTTGGCTAAACTTTT 58.043 33.333 0.00 0.00 0.00 2.27
741 797 7.214467 TCATAGGTTCTTGGCTAAACTTTTG 57.786 36.000 0.00 0.00 0.00 2.44
742 798 4.937201 AGGTTCTTGGCTAAACTTTTGG 57.063 40.909 0.00 0.00 0.00 3.28
743 799 4.286707 AGGTTCTTGGCTAAACTTTTGGT 58.713 39.130 0.00 0.00 0.00 3.67
744 800 4.099419 AGGTTCTTGGCTAAACTTTTGGTG 59.901 41.667 0.00 0.00 0.00 4.17
745 801 4.368315 GTTCTTGGCTAAACTTTTGGTGG 58.632 43.478 0.00 0.00 0.00 4.61
746 802 3.904717 TCTTGGCTAAACTTTTGGTGGA 58.095 40.909 0.00 0.00 0.00 4.02
747 803 4.282496 TCTTGGCTAAACTTTTGGTGGAA 58.718 39.130 0.00 0.00 0.00 3.53
748 804 4.340950 TCTTGGCTAAACTTTTGGTGGAAG 59.659 41.667 0.00 0.00 0.00 3.46
749 805 3.904717 TGGCTAAACTTTTGGTGGAAGA 58.095 40.909 0.00 0.00 0.00 2.87
750 806 3.888930 TGGCTAAACTTTTGGTGGAAGAG 59.111 43.478 0.00 0.00 0.00 2.85
751 807 4.142038 GGCTAAACTTTTGGTGGAAGAGA 58.858 43.478 0.00 0.00 0.00 3.10
752 808 4.767409 GGCTAAACTTTTGGTGGAAGAGAT 59.233 41.667 0.00 0.00 0.00 2.75
753 809 5.106118 GGCTAAACTTTTGGTGGAAGAGATC 60.106 44.000 0.00 0.00 0.00 2.75
754 810 5.473504 GCTAAACTTTTGGTGGAAGAGATCA 59.526 40.000 0.00 0.00 0.00 2.92
755 811 5.774498 AAACTTTTGGTGGAAGAGATCAC 57.226 39.130 0.00 0.00 0.00 3.06
762 818 3.309296 GGTGGAAGAGATCACCCTATCA 58.691 50.000 0.00 0.00 45.60 2.15
763 819 3.711704 GGTGGAAGAGATCACCCTATCAA 59.288 47.826 0.00 0.00 45.60 2.57
764 820 4.164221 GGTGGAAGAGATCACCCTATCAAA 59.836 45.833 0.00 0.00 45.60 2.69
765 821 5.119694 GTGGAAGAGATCACCCTATCAAAC 58.880 45.833 0.00 0.00 0.00 2.93
766 822 5.032846 TGGAAGAGATCACCCTATCAAACT 58.967 41.667 0.00 0.00 0.00 2.66
767 823 5.104776 TGGAAGAGATCACCCTATCAAACTG 60.105 44.000 0.00 0.00 0.00 3.16
768 824 5.104735 GGAAGAGATCACCCTATCAAACTGT 60.105 44.000 0.00 0.00 0.00 3.55
769 825 6.098409 GGAAGAGATCACCCTATCAAACTGTA 59.902 42.308 0.00 0.00 0.00 2.74
770 826 7.202047 GGAAGAGATCACCCTATCAAACTGTAT 60.202 40.741 0.00 0.00 0.00 2.29
771 827 7.060383 AGAGATCACCCTATCAAACTGTATG 57.940 40.000 0.00 0.00 0.00 2.39
772 828 6.613271 AGAGATCACCCTATCAAACTGTATGT 59.387 38.462 0.00 0.00 0.00 2.29
773 829 6.821388 AGATCACCCTATCAAACTGTATGTC 58.179 40.000 0.00 0.00 0.00 3.06
774 830 6.384015 AGATCACCCTATCAAACTGTATGTCA 59.616 38.462 0.00 0.00 0.00 3.58
791 847 8.926715 TGTATGTCAGTATAGAAATGTGTGAC 57.073 34.615 0.00 0.00 34.68 3.67
792 848 8.527810 TGTATGTCAGTATAGAAATGTGTGACA 58.472 33.333 4.85 4.85 44.92 3.58
793 849 7.834068 ATGTCAGTATAGAAATGTGTGACAC 57.166 36.000 9.14 9.14 43.97 3.67
794 850 6.163476 TGTCAGTATAGAAATGTGTGACACC 58.837 40.000 13.85 0.00 38.26 4.16
795 851 6.163476 GTCAGTATAGAAATGTGTGACACCA 58.837 40.000 13.85 1.72 34.33 4.17
796 852 6.818644 GTCAGTATAGAAATGTGTGACACCAT 59.181 38.462 13.85 4.15 34.33 3.55
797 853 7.979537 GTCAGTATAGAAATGTGTGACACCATA 59.020 37.037 13.85 0.00 34.33 2.74
798 854 8.197439 TCAGTATAGAAATGTGTGACACCATAG 58.803 37.037 13.85 0.00 32.73 2.23
799 855 8.197439 CAGTATAGAAATGTGTGACACCATAGA 58.803 37.037 13.85 0.00 32.73 1.98
800 856 8.928448 AGTATAGAAATGTGTGACACCATAGAT 58.072 33.333 13.85 0.00 32.73 1.98
801 857 9.197694 GTATAGAAATGTGTGACACCATAGATC 57.802 37.037 13.85 3.46 32.73 2.75
802 858 6.053632 AGAAATGTGTGACACCATAGATCA 57.946 37.500 13.85 0.00 32.73 2.92
803 859 5.877012 AGAAATGTGTGACACCATAGATCAC 59.123 40.000 13.85 0.00 42.54 3.06
806 862 3.610040 TGTGACACCATAGATCACACC 57.390 47.619 2.45 0.00 45.89 4.16
807 863 2.903135 TGTGACACCATAGATCACACCA 59.097 45.455 2.45 0.00 45.89 4.17
808 864 3.326297 TGTGACACCATAGATCACACCAA 59.674 43.478 2.45 0.00 45.89 3.67
809 865 3.684788 GTGACACCATAGATCACACCAAC 59.315 47.826 0.00 0.00 41.94 3.77
810 866 3.270877 GACACCATAGATCACACCAACC 58.729 50.000 0.00 0.00 0.00 3.77
811 867 2.279741 CACCATAGATCACACCAACCG 58.720 52.381 0.00 0.00 0.00 4.44
812 868 1.299541 CCATAGATCACACCAACCGC 58.700 55.000 0.00 0.00 0.00 5.68
813 869 1.406751 CCATAGATCACACCAACCGCA 60.407 52.381 0.00 0.00 0.00 5.69
814 870 2.564771 CATAGATCACACCAACCGCAT 58.435 47.619 0.00 0.00 0.00 4.73
815 871 2.309528 TAGATCACACCAACCGCATC 57.690 50.000 0.00 0.00 0.00 3.91
816 872 0.324614 AGATCACACCAACCGCATCA 59.675 50.000 0.00 0.00 0.00 3.07
817 873 1.164411 GATCACACCAACCGCATCAA 58.836 50.000 0.00 0.00 0.00 2.57
818 874 1.539388 GATCACACCAACCGCATCAAA 59.461 47.619 0.00 0.00 0.00 2.69
819 875 0.665835 TCACACCAACCGCATCAAAC 59.334 50.000 0.00 0.00 0.00 2.93
820 876 0.667993 CACACCAACCGCATCAAACT 59.332 50.000 0.00 0.00 0.00 2.66
821 877 1.066908 CACACCAACCGCATCAAACTT 59.933 47.619 0.00 0.00 0.00 2.66
822 878 1.754226 ACACCAACCGCATCAAACTTT 59.246 42.857 0.00 0.00 0.00 2.66
823 879 2.167487 ACACCAACCGCATCAAACTTTT 59.833 40.909 0.00 0.00 0.00 2.27
824 880 3.194062 CACCAACCGCATCAAACTTTTT 58.806 40.909 0.00 0.00 0.00 1.94
825 881 3.001127 CACCAACCGCATCAAACTTTTTG 59.999 43.478 0.00 0.00 0.00 2.44
826 882 3.194062 CCAACCGCATCAAACTTTTTGT 58.806 40.909 0.00 0.00 0.00 2.83
827 883 3.245048 CCAACCGCATCAAACTTTTTGTC 59.755 43.478 0.00 0.00 0.00 3.18
828 884 2.726633 ACCGCATCAAACTTTTTGTCG 58.273 42.857 0.00 2.46 0.00 4.35
829 885 2.050691 CCGCATCAAACTTTTTGTCGG 58.949 47.619 11.86 11.86 0.00 4.79
830 886 1.451651 CGCATCAAACTTTTTGTCGGC 59.548 47.619 0.00 0.00 0.00 5.54
831 887 2.468831 GCATCAAACTTTTTGTCGGCA 58.531 42.857 0.00 0.00 0.00 5.69
832 888 3.059166 GCATCAAACTTTTTGTCGGCAT 58.941 40.909 0.00 0.00 0.00 4.40
833 889 4.233789 GCATCAAACTTTTTGTCGGCATA 58.766 39.130 0.00 0.00 0.00 3.14
834 890 4.324402 GCATCAAACTTTTTGTCGGCATAG 59.676 41.667 0.00 0.00 0.00 2.23
835 891 5.698832 CATCAAACTTTTTGTCGGCATAGA 58.301 37.500 0.00 0.00 0.00 1.98
836 892 5.957842 TCAAACTTTTTGTCGGCATAGAT 57.042 34.783 0.00 0.00 0.00 1.98
837 893 6.325919 TCAAACTTTTTGTCGGCATAGATT 57.674 33.333 0.00 0.00 0.00 2.40
838 894 6.744112 TCAAACTTTTTGTCGGCATAGATTT 58.256 32.000 0.00 0.00 0.00 2.17
839 895 7.877003 TCAAACTTTTTGTCGGCATAGATTTA 58.123 30.769 0.00 0.00 0.00 1.40
840 896 8.519526 TCAAACTTTTTGTCGGCATAGATTTAT 58.480 29.630 0.00 0.00 0.00 1.40
841 897 8.798153 CAAACTTTTTGTCGGCATAGATTTATC 58.202 33.333 0.00 0.00 0.00 1.75
842 898 7.865706 ACTTTTTGTCGGCATAGATTTATCT 57.134 32.000 0.00 0.00 40.86 1.98
843 899 7.697691 ACTTTTTGTCGGCATAGATTTATCTG 58.302 34.615 0.00 0.00 37.76 2.90
844 900 7.336931 ACTTTTTGTCGGCATAGATTTATCTGT 59.663 33.333 0.00 0.00 37.76 3.41
845 901 6.844696 TTTGTCGGCATAGATTTATCTGTC 57.155 37.500 0.00 0.00 37.76 3.51
846 902 4.546570 TGTCGGCATAGATTTATCTGTCG 58.453 43.478 2.51 1.69 37.76 4.35
847 903 3.921021 GTCGGCATAGATTTATCTGTCGG 59.079 47.826 2.51 0.00 37.76 4.79
848 904 2.668457 CGGCATAGATTTATCTGTCGGC 59.332 50.000 2.51 2.87 37.76 5.54
849 905 3.664107 GGCATAGATTTATCTGTCGGCA 58.336 45.455 2.51 0.00 37.76 5.69
850 906 4.065088 GGCATAGATTTATCTGTCGGCAA 58.935 43.478 2.51 0.00 37.76 4.52
851 907 4.697352 GGCATAGATTTATCTGTCGGCAAT 59.303 41.667 2.51 0.00 37.76 3.56
852 908 5.391310 GGCATAGATTTATCTGTCGGCAATG 60.391 44.000 2.51 0.00 37.76 2.82
853 909 5.409520 GCATAGATTTATCTGTCGGCAATGA 59.590 40.000 2.51 0.00 37.76 2.57
854 910 6.619446 GCATAGATTTATCTGTCGGCAATGAC 60.619 42.308 2.51 0.00 37.76 3.06
855 911 4.130118 AGATTTATCTGTCGGCAATGACC 58.870 43.478 0.00 0.00 38.11 4.02
856 912 3.627395 TTTATCTGTCGGCAATGACCT 57.373 42.857 0.00 0.00 38.11 3.85
857 913 3.627395 TTATCTGTCGGCAATGACCTT 57.373 42.857 0.00 0.00 38.11 3.50
858 914 2.496899 ATCTGTCGGCAATGACCTTT 57.503 45.000 0.00 0.00 38.11 3.11
859 915 1.808411 TCTGTCGGCAATGACCTTTC 58.192 50.000 0.00 0.00 38.11 2.62
860 916 0.804989 CTGTCGGCAATGACCTTTCC 59.195 55.000 0.00 0.00 38.11 3.13
861 917 0.400213 TGTCGGCAATGACCTTTCCT 59.600 50.000 0.00 0.00 38.11 3.36
862 918 0.804989 GTCGGCAATGACCTTTCCTG 59.195 55.000 0.00 0.00 32.61 3.86
863 919 0.322456 TCGGCAATGACCTTTCCTGG 60.322 55.000 0.00 0.00 0.00 4.45
864 920 1.893062 GGCAATGACCTTTCCTGGC 59.107 57.895 0.00 0.00 0.00 4.85
865 921 0.899717 GGCAATGACCTTTCCTGGCA 60.900 55.000 0.00 0.00 32.34 4.92
866 922 0.529378 GCAATGACCTTTCCTGGCAG 59.471 55.000 7.75 7.75 0.00 4.85
867 923 1.180029 CAATGACCTTTCCTGGCAGG 58.820 55.000 28.01 28.01 36.46 4.85
868 924 1.075601 AATGACCTTTCCTGGCAGGA 58.924 50.000 32.01 32.01 44.10 3.86
869 925 0.329596 ATGACCTTTCCTGGCAGGAC 59.670 55.000 35.18 23.00 45.78 3.85
870 926 0.768221 TGACCTTTCCTGGCAGGACT 60.768 55.000 35.18 17.73 45.78 3.85
871 927 1.276622 GACCTTTCCTGGCAGGACTA 58.723 55.000 35.18 23.76 45.78 2.59
872 928 1.208293 GACCTTTCCTGGCAGGACTAG 59.792 57.143 35.18 30.16 45.78 2.57
966 1027 2.825387 TGCTTGCTGCCGCTATGG 60.825 61.111 11.42 0.00 42.00 2.74
994 1055 2.753296 GAGCTCTATGGACATCACTGC 58.247 52.381 6.43 0.00 0.00 4.40
1000 1063 4.536765 TCTATGGACATCACTGCTAGACA 58.463 43.478 0.00 0.00 0.00 3.41
1186 1249 2.566833 CCTCTTTGGTGACATGACCA 57.433 50.000 0.00 0.00 44.64 4.02
1336 1399 1.135083 GGCGGATGATAGGGTATGACG 60.135 57.143 0.00 0.00 0.00 4.35
1341 1404 3.255149 GGATGATAGGGTATGACGAACGT 59.745 47.826 0.00 0.00 0.00 3.99
1384 1447 2.022240 GATCCAGAGAGGGTGCGGAC 62.022 65.000 0.00 0.00 38.24 4.79
1403 1466 3.225069 CTTGTTGGGCCTTTGCGGG 62.225 63.158 4.53 0.00 38.85 6.13
1500 1563 4.843728 ACTGTGACAAGAGAAGTTTTGGA 58.156 39.130 0.00 0.00 0.00 3.53
1632 1695 2.159014 GCCAAAAAGAAAGAACCCCGTT 60.159 45.455 0.00 0.00 0.00 4.44
1828 1891 0.250038 CTATGGCACCACCGATGAGG 60.250 60.000 0.00 0.00 43.94 3.86
1833 1896 0.107456 GCACCACCGATGAGGATGAT 59.893 55.000 0.00 0.00 45.00 2.45
2096 2173 3.441222 TCAACATTGAATGCACAGCTAGG 59.559 43.478 4.84 0.00 33.55 3.02
2204 2281 9.853555 TTAAATGCATTAATGTAACCTTCACAG 57.146 29.630 13.39 0.00 0.00 3.66
2233 2310 5.062183 TCTCAGAGAACACATAAATTTCGCG 59.938 40.000 0.00 0.00 0.00 5.87
2389 2472 3.763897 GGTGGCTCCATACACTGATTTTT 59.236 43.478 0.00 0.00 37.72 1.94
2428 2511 2.599659 CGCTTCAATGCCTTTTCTTCC 58.400 47.619 0.00 0.00 0.00 3.46
2442 2525 1.691196 TCTTCCTGTGGTTGGCTTTG 58.309 50.000 0.00 0.00 0.00 2.77
2443 2526 1.064017 TCTTCCTGTGGTTGGCTTTGT 60.064 47.619 0.00 0.00 0.00 2.83
2450 2556 0.980231 TGGTTGGCTTTGTGGGCTTT 60.980 50.000 0.00 0.00 0.00 3.51
2525 2631 5.084818 TGAGACGATTAACCACATCATGT 57.915 39.130 0.00 0.00 0.00 3.21
2565 2671 2.610479 GCACAGTCCAGTTCTCGATTCA 60.610 50.000 0.00 0.00 0.00 2.57
2566 2672 3.653344 CACAGTCCAGTTCTCGATTCAA 58.347 45.455 0.00 0.00 0.00 2.69
2595 2701 1.059006 GGGGATCATGGGCAGACTCT 61.059 60.000 0.00 0.00 0.00 3.24
2597 2703 0.033228 GGATCATGGGCAGACTCTCG 59.967 60.000 0.00 0.00 0.00 4.04
2608 2714 2.544686 GCAGACTCTCGCTATAGACGAA 59.455 50.000 16.35 9.36 39.39 3.85
2662 2768 1.242076 ACAGATGCACACAGAAAGCC 58.758 50.000 0.00 0.00 0.00 4.35
2772 2878 4.880120 TCAGGTACTTCGTATGATCGAACT 59.120 41.667 0.00 0.00 43.36 3.01
2773 2879 4.970611 CAGGTACTTCGTATGATCGAACTG 59.029 45.833 0.00 0.00 43.36 3.16
2774 2880 4.639310 AGGTACTTCGTATGATCGAACTGT 59.361 41.667 0.00 0.00 43.36 3.55
2775 2881 5.125097 AGGTACTTCGTATGATCGAACTGTT 59.875 40.000 0.00 0.00 43.36 3.16
2776 2882 6.317140 AGGTACTTCGTATGATCGAACTGTTA 59.683 38.462 0.00 0.00 43.36 2.41
2777 2883 6.632035 GGTACTTCGTATGATCGAACTGTTAG 59.368 42.308 0.00 0.00 43.36 2.34
2778 2884 6.432607 ACTTCGTATGATCGAACTGTTAGA 57.567 37.500 5.82 5.82 43.36 2.10
2779 2885 6.849502 ACTTCGTATGATCGAACTGTTAGAA 58.150 36.000 7.42 0.00 43.36 2.10
2780 2886 7.481642 ACTTCGTATGATCGAACTGTTAGAAT 58.518 34.615 7.42 1.06 43.36 2.40
2781 2887 8.618677 ACTTCGTATGATCGAACTGTTAGAATA 58.381 33.333 7.42 0.18 43.36 1.75
2782 2888 9.613957 CTTCGTATGATCGAACTGTTAGAATAT 57.386 33.333 7.42 7.56 43.36 1.28
2783 2889 9.608617 TTCGTATGATCGAACTGTTAGAATATC 57.391 33.333 7.42 2.30 43.36 1.63
2784 2890 9.000486 TCGTATGATCGAACTGTTAGAATATCT 58.000 33.333 7.42 0.00 36.89 1.98
2785 2891 9.056306 CGTATGATCGAACTGTTAGAATATCTG 57.944 37.037 7.42 0.00 0.00 2.90
2786 2892 9.900710 GTATGATCGAACTGTTAGAATATCTGT 57.099 33.333 7.42 0.00 0.00 3.41
2789 2895 9.899226 TGATCGAACTGTTAGAATATCTGTATG 57.101 33.333 7.42 0.00 0.00 2.39
2790 2896 9.900710 GATCGAACTGTTAGAATATCTGTATGT 57.099 33.333 7.42 0.00 0.00 2.29
2834 2940 9.765295 AAACCGTATATACAATAGGGATAGAGT 57.235 33.333 13.22 0.00 34.58 3.24
2835 2941 9.765295 AACCGTATATACAATAGGGATAGAGTT 57.235 33.333 13.22 0.00 34.58 3.01
2836 2942 9.765295 ACCGTATATACAATAGGGATAGAGTTT 57.235 33.333 13.22 0.00 34.58 2.66
2839 2945 9.819267 GTATATACAATAGGGATAGAGTTTGGC 57.181 37.037 8.05 0.00 0.00 4.52
2840 2946 4.073293 ACAATAGGGATAGAGTTTGGCG 57.927 45.455 0.00 0.00 0.00 5.69
2841 2947 3.454812 ACAATAGGGATAGAGTTTGGCGT 59.545 43.478 0.00 0.00 0.00 5.68
2842 2948 3.753294 ATAGGGATAGAGTTTGGCGTG 57.247 47.619 0.00 0.00 0.00 5.34
2843 2949 0.107654 AGGGATAGAGTTTGGCGTGC 60.108 55.000 0.00 0.00 0.00 5.34
2844 2950 1.429148 GGGATAGAGTTTGGCGTGCG 61.429 60.000 0.00 0.00 0.00 5.34
2845 2951 0.739813 GGATAGAGTTTGGCGTGCGT 60.740 55.000 0.00 0.00 0.00 5.24
2846 2952 0.370273 GATAGAGTTTGGCGTGCGTG 59.630 55.000 0.00 0.00 0.00 5.34
2847 2953 0.320421 ATAGAGTTTGGCGTGCGTGT 60.320 50.000 0.00 0.00 0.00 4.49
2848 2954 0.531090 TAGAGTTTGGCGTGCGTGTT 60.531 50.000 0.00 0.00 0.00 3.32
2849 2955 1.654137 GAGTTTGGCGTGCGTGTTG 60.654 57.895 0.00 0.00 0.00 3.33
2850 2956 2.101380 GTTTGGCGTGCGTGTTGT 59.899 55.556 0.00 0.00 0.00 3.32
2851 2957 1.090625 AGTTTGGCGTGCGTGTTGTA 61.091 50.000 0.00 0.00 0.00 2.41
2852 2958 0.248134 GTTTGGCGTGCGTGTTGTAA 60.248 50.000 0.00 0.00 0.00 2.41
2853 2959 0.663688 TTTGGCGTGCGTGTTGTAAT 59.336 45.000 0.00 0.00 0.00 1.89
2854 2960 0.236187 TTGGCGTGCGTGTTGTAATC 59.764 50.000 0.00 0.00 0.00 1.75
2855 2961 1.133869 GGCGTGCGTGTTGTAATCC 59.866 57.895 0.00 0.00 0.00 3.01
2856 2962 1.296056 GGCGTGCGTGTTGTAATCCT 61.296 55.000 0.00 0.00 0.00 3.24
2857 2963 0.179225 GCGTGCGTGTTGTAATCCTG 60.179 55.000 0.00 0.00 0.00 3.86
2858 2964 0.442310 CGTGCGTGTTGTAATCCTGG 59.558 55.000 0.00 0.00 0.00 4.45
2859 2965 1.519408 GTGCGTGTTGTAATCCTGGT 58.481 50.000 0.00 0.00 0.00 4.00
2860 2966 1.877443 GTGCGTGTTGTAATCCTGGTT 59.123 47.619 0.00 0.00 0.00 3.67
2861 2967 3.068560 GTGCGTGTTGTAATCCTGGTTA 58.931 45.455 0.00 0.00 0.00 2.85
2862 2968 3.124636 GTGCGTGTTGTAATCCTGGTTAG 59.875 47.826 0.00 0.00 0.00 2.34
2863 2969 3.244284 TGCGTGTTGTAATCCTGGTTAGT 60.244 43.478 0.00 0.00 0.00 2.24
2864 2970 3.749609 GCGTGTTGTAATCCTGGTTAGTT 59.250 43.478 0.00 0.00 0.00 2.24
2865 2971 4.931002 GCGTGTTGTAATCCTGGTTAGTTA 59.069 41.667 0.00 0.00 0.00 2.24
2866 2972 5.063060 GCGTGTTGTAATCCTGGTTAGTTAG 59.937 44.000 0.00 0.00 0.00 2.34
2867 2973 5.579511 CGTGTTGTAATCCTGGTTAGTTAGG 59.420 44.000 0.00 0.00 35.34 2.69
2868 2974 6.470278 GTGTTGTAATCCTGGTTAGTTAGGT 58.530 40.000 0.00 0.00 35.54 3.08
2869 2975 6.938596 GTGTTGTAATCCTGGTTAGTTAGGTT 59.061 38.462 0.00 0.00 35.54 3.50
2870 2976 6.938030 TGTTGTAATCCTGGTTAGTTAGGTTG 59.062 38.462 0.00 0.00 35.54 3.77
2871 2977 6.691255 TGTAATCCTGGTTAGTTAGGTTGT 57.309 37.500 0.00 0.00 35.54 3.32
2872 2978 7.081857 TGTAATCCTGGTTAGTTAGGTTGTT 57.918 36.000 0.00 0.00 35.54 2.83
2873 2979 6.938030 TGTAATCCTGGTTAGTTAGGTTGTTG 59.062 38.462 0.00 0.00 35.54 3.33
2874 2980 5.578157 ATCCTGGTTAGTTAGGTTGTTGT 57.422 39.130 0.00 0.00 35.54 3.32
2875 2981 4.710324 TCCTGGTTAGTTAGGTTGTTGTG 58.290 43.478 0.00 0.00 35.54 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.910931 ACCCCATCTTTTTACCCTTAATGT 58.089 37.500 0.00 0.00 0.00 2.71
133 152 1.961277 CGCATCAACCGCTATCCCC 60.961 63.158 0.00 0.00 0.00 4.81
134 153 1.227556 ACGCATCAACCGCTATCCC 60.228 57.895 0.00 0.00 0.00 3.85
171 190 6.493458 AGACAAGTAGGCCAAAACAATTATGT 59.507 34.615 5.01 2.33 43.14 2.29
178 197 2.955660 CCAAGACAAGTAGGCCAAAACA 59.044 45.455 5.01 0.00 0.00 2.83
186 205 4.868734 GGAATAACGTCCAAGACAAGTAGG 59.131 45.833 0.00 0.00 37.65 3.18
216 236 7.940850 TGACGATATCTAAGACAATGATCACA 58.059 34.615 0.00 0.00 0.00 3.58
217 237 8.858186 CATGACGATATCTAAGACAATGATCAC 58.142 37.037 0.00 0.00 0.00 3.06
280 302 5.944599 TGAAAATAGCATACGGTGGGTAAAA 59.055 36.000 0.00 0.00 34.09 1.52
308 332 6.678900 GCCATAGTTTTCACTAATGGCTTCTG 60.679 42.308 15.54 1.09 45.42 3.02
317 341 2.356330 CGGGGGCCATAGTTTTCACTAA 60.356 50.000 4.39 0.00 39.05 2.24
442 479 3.242608 CGGCGGTTAATTTCAACGATCAT 60.243 43.478 0.00 0.00 0.00 2.45
452 489 2.021457 CAATCCCTCGGCGGTTAATTT 58.979 47.619 7.21 0.00 0.00 1.82
474 512 2.047179 AACGCGAAGAAGGGGCTC 60.047 61.111 15.93 0.00 0.00 4.70
476 514 3.431725 CCAACGCGAAGAAGGGGC 61.432 66.667 15.93 0.00 0.00 5.80
483 522 1.075542 TACTTGCATCCAACGCGAAG 58.924 50.000 15.93 5.64 0.00 3.79
494 534 8.885494 ACACACAAAATAACAAATACTTGCAT 57.115 26.923 0.00 0.00 35.84 3.96
522 562 5.108517 CAAGCAACACCTTGTTAACAACAT 58.891 37.500 17.01 5.43 38.77 2.71
676 732 7.543359 AGGAAACAATGGATTCAAAGATTGA 57.457 32.000 0.00 0.00 38.04 2.57
677 733 7.118680 CCAAGGAAACAATGGATTCAAAGATTG 59.881 37.037 0.00 0.00 40.85 2.67
678 734 7.163441 CCAAGGAAACAATGGATTCAAAGATT 58.837 34.615 4.02 0.00 40.85 2.40
679 735 6.296030 CCCAAGGAAACAATGGATTCAAAGAT 60.296 38.462 4.02 0.00 40.85 2.40
680 736 5.011943 CCCAAGGAAACAATGGATTCAAAGA 59.988 40.000 4.02 0.00 40.85 2.52
681 737 5.011943 TCCCAAGGAAACAATGGATTCAAAG 59.988 40.000 4.02 0.00 40.85 2.77
682 738 4.904251 TCCCAAGGAAACAATGGATTCAAA 59.096 37.500 4.02 0.00 40.85 2.69
683 739 4.487804 TCCCAAGGAAACAATGGATTCAA 58.512 39.130 4.02 0.00 40.85 2.69
684 740 4.125124 TCCCAAGGAAACAATGGATTCA 57.875 40.909 4.02 0.00 40.85 2.57
685 741 5.187576 TGATTCCCAAGGAAACAATGGATTC 59.812 40.000 4.05 0.00 45.41 2.52
686 742 5.046376 GTGATTCCCAAGGAAACAATGGATT 60.046 40.000 7.78 0.00 43.99 3.01
687 743 4.467438 GTGATTCCCAAGGAAACAATGGAT 59.533 41.667 7.78 0.00 43.99 3.41
688 744 3.831911 GTGATTCCCAAGGAAACAATGGA 59.168 43.478 7.78 0.00 43.99 3.41
689 745 3.834231 AGTGATTCCCAAGGAAACAATGG 59.166 43.478 7.78 0.00 43.99 3.16
690 746 5.126061 CCTAGTGATTCCCAAGGAAACAATG 59.874 44.000 14.41 6.67 43.99 2.82
691 747 5.222337 ACCTAGTGATTCCCAAGGAAACAAT 60.222 40.000 10.68 10.68 43.99 2.71
692 748 4.105697 ACCTAGTGATTCCCAAGGAAACAA 59.894 41.667 7.78 0.00 43.99 2.83
693 749 3.655777 ACCTAGTGATTCCCAAGGAAACA 59.344 43.478 0.00 1.01 45.41 2.83
694 750 4.302559 ACCTAGTGATTCCCAAGGAAAC 57.697 45.455 0.00 0.00 45.41 2.78
695 751 5.729229 TGATACCTAGTGATTCCCAAGGAAA 59.271 40.000 0.00 0.00 45.41 3.13
696 752 5.285401 TGATACCTAGTGATTCCCAAGGAA 58.715 41.667 0.00 0.00 46.39 3.36
697 753 4.890988 TGATACCTAGTGATTCCCAAGGA 58.109 43.478 0.00 0.00 0.00 3.36
698 754 5.832539 ATGATACCTAGTGATTCCCAAGG 57.167 43.478 0.00 0.00 0.00 3.61
699 755 6.498651 ACCTATGATACCTAGTGATTCCCAAG 59.501 42.308 0.00 0.00 0.00 3.61
700 756 6.390504 ACCTATGATACCTAGTGATTCCCAA 58.609 40.000 0.00 0.00 0.00 4.12
701 757 5.977533 ACCTATGATACCTAGTGATTCCCA 58.022 41.667 0.00 0.00 0.00 4.37
702 758 6.726764 AGAACCTATGATACCTAGTGATTCCC 59.273 42.308 0.00 0.00 0.00 3.97
703 759 7.784470 AGAACCTATGATACCTAGTGATTCC 57.216 40.000 0.00 0.00 0.00 3.01
704 760 8.091449 CCAAGAACCTATGATACCTAGTGATTC 58.909 40.741 0.00 0.00 0.00 2.52
705 761 7.473511 GCCAAGAACCTATGATACCTAGTGATT 60.474 40.741 0.00 0.00 0.00 2.57
706 762 6.014156 GCCAAGAACCTATGATACCTAGTGAT 60.014 42.308 0.00 0.00 0.00 3.06
707 763 5.304614 GCCAAGAACCTATGATACCTAGTGA 59.695 44.000 0.00 0.00 0.00 3.41
708 764 5.305644 AGCCAAGAACCTATGATACCTAGTG 59.694 44.000 0.00 0.00 0.00 2.74
709 765 5.468658 AGCCAAGAACCTATGATACCTAGT 58.531 41.667 0.00 0.00 0.00 2.57
710 766 7.540474 TTAGCCAAGAACCTATGATACCTAG 57.460 40.000 0.00 0.00 0.00 3.02
711 767 7.567622 AGTTTAGCCAAGAACCTATGATACCTA 59.432 37.037 0.00 0.00 0.00 3.08
712 768 6.387220 AGTTTAGCCAAGAACCTATGATACCT 59.613 38.462 0.00 0.00 0.00 3.08
713 769 6.592870 AGTTTAGCCAAGAACCTATGATACC 58.407 40.000 0.00 0.00 0.00 2.73
714 770 8.507524 AAAGTTTAGCCAAGAACCTATGATAC 57.492 34.615 0.00 0.00 0.00 2.24
715 771 8.956426 CAAAAGTTTAGCCAAGAACCTATGATA 58.044 33.333 0.00 0.00 0.00 2.15
716 772 7.093771 CCAAAAGTTTAGCCAAGAACCTATGAT 60.094 37.037 0.00 0.00 0.00 2.45
717 773 6.208599 CCAAAAGTTTAGCCAAGAACCTATGA 59.791 38.462 0.00 0.00 0.00 2.15
718 774 6.015434 ACCAAAAGTTTAGCCAAGAACCTATG 60.015 38.462 0.00 0.00 0.00 2.23
719 775 6.015434 CACCAAAAGTTTAGCCAAGAACCTAT 60.015 38.462 0.00 0.00 0.00 2.57
720 776 5.300792 CACCAAAAGTTTAGCCAAGAACCTA 59.699 40.000 0.00 0.00 0.00 3.08
721 777 4.099419 CACCAAAAGTTTAGCCAAGAACCT 59.901 41.667 0.00 0.00 0.00 3.50
722 778 4.368315 CACCAAAAGTTTAGCCAAGAACC 58.632 43.478 0.00 0.00 0.00 3.62
723 779 4.098807 TCCACCAAAAGTTTAGCCAAGAAC 59.901 41.667 0.00 0.00 0.00 3.01
724 780 4.282496 TCCACCAAAAGTTTAGCCAAGAA 58.718 39.130 0.00 0.00 0.00 2.52
725 781 3.904717 TCCACCAAAAGTTTAGCCAAGA 58.095 40.909 0.00 0.00 0.00 3.02
726 782 4.340950 TCTTCCACCAAAAGTTTAGCCAAG 59.659 41.667 0.00 0.00 0.00 3.61
727 783 4.282496 TCTTCCACCAAAAGTTTAGCCAA 58.718 39.130 0.00 0.00 0.00 4.52
728 784 3.888930 CTCTTCCACCAAAAGTTTAGCCA 59.111 43.478 0.00 0.00 0.00 4.75
729 785 4.142038 TCTCTTCCACCAAAAGTTTAGCC 58.858 43.478 0.00 0.00 0.00 3.93
730 786 5.473504 TGATCTCTTCCACCAAAAGTTTAGC 59.526 40.000 0.00 0.00 0.00 3.09
731 787 6.903419 GTGATCTCTTCCACCAAAAGTTTAG 58.097 40.000 0.00 0.00 0.00 1.85
732 788 6.877611 GTGATCTCTTCCACCAAAAGTTTA 57.122 37.500 0.00 0.00 0.00 2.01
733 789 5.774498 GTGATCTCTTCCACCAAAAGTTT 57.226 39.130 0.00 0.00 0.00 2.66
742 798 5.104735 AGTTTGATAGGGTGATCTCTTCCAC 60.105 44.000 0.00 0.00 0.00 4.02
743 799 5.032846 AGTTTGATAGGGTGATCTCTTCCA 58.967 41.667 0.00 0.00 0.00 3.53
744 800 5.104735 ACAGTTTGATAGGGTGATCTCTTCC 60.105 44.000 0.00 0.00 0.00 3.46
745 801 5.983540 ACAGTTTGATAGGGTGATCTCTTC 58.016 41.667 0.00 0.00 0.00 2.87
746 802 7.126421 ACATACAGTTTGATAGGGTGATCTCTT 59.874 37.037 0.00 0.00 0.00 2.85
747 803 6.613271 ACATACAGTTTGATAGGGTGATCTCT 59.387 38.462 0.00 0.00 0.00 3.10
748 804 6.821388 ACATACAGTTTGATAGGGTGATCTC 58.179 40.000 0.00 0.00 0.00 2.75
749 805 6.384015 TGACATACAGTTTGATAGGGTGATCT 59.616 38.462 0.00 0.00 0.00 2.75
750 806 6.582636 TGACATACAGTTTGATAGGGTGATC 58.417 40.000 0.00 0.00 0.00 2.92
751 807 6.560003 TGACATACAGTTTGATAGGGTGAT 57.440 37.500 0.00 0.00 0.00 3.06
752 808 5.977635 CTGACATACAGTTTGATAGGGTGA 58.022 41.667 0.00 0.00 41.30 4.02
766 822 8.527810 TGTCACACATTTCTATACTGACATACA 58.472 33.333 0.00 0.00 33.38 2.29
767 823 8.808529 GTGTCACACATTTCTATACTGACATAC 58.191 37.037 2.00 0.00 38.90 2.39
768 824 7.979537 GGTGTCACACATTTCTATACTGACATA 59.020 37.037 10.85 0.00 38.90 2.29
769 825 6.818644 GGTGTCACACATTTCTATACTGACAT 59.181 38.462 10.85 0.00 38.90 3.06
770 826 6.163476 GGTGTCACACATTTCTATACTGACA 58.837 40.000 10.85 0.00 35.86 3.58
771 827 6.163476 TGGTGTCACACATTTCTATACTGAC 58.837 40.000 10.85 0.00 35.86 3.51
772 828 6.353404 TGGTGTCACACATTTCTATACTGA 57.647 37.500 10.85 0.00 35.86 3.41
773 829 8.197439 TCTATGGTGTCACACATTTCTATACTG 58.803 37.037 10.85 0.00 35.86 2.74
774 830 8.306313 TCTATGGTGTCACACATTTCTATACT 57.694 34.615 10.85 0.00 35.86 2.12
775 831 9.197694 GATCTATGGTGTCACACATTTCTATAC 57.802 37.037 10.85 0.00 35.86 1.47
776 832 8.923270 TGATCTATGGTGTCACACATTTCTATA 58.077 33.333 10.85 0.00 35.86 1.31
777 833 7.712639 GTGATCTATGGTGTCACACATTTCTAT 59.287 37.037 10.85 0.00 41.35 1.98
778 834 7.041721 GTGATCTATGGTGTCACACATTTCTA 58.958 38.462 10.85 0.00 41.35 2.10
779 835 5.877012 GTGATCTATGGTGTCACACATTTCT 59.123 40.000 10.85 0.00 41.35 2.52
780 836 5.643348 TGTGATCTATGGTGTCACACATTTC 59.357 40.000 10.85 0.00 45.10 2.17
781 837 5.559770 TGTGATCTATGGTGTCACACATTT 58.440 37.500 10.85 0.00 45.10 2.32
782 838 5.164620 TGTGATCTATGGTGTCACACATT 57.835 39.130 10.85 0.00 45.10 2.71
783 839 4.824479 TGTGATCTATGGTGTCACACAT 57.176 40.909 10.85 8.47 45.10 3.21
787 843 3.610040 TGGTGTGATCTATGGTGTCAC 57.390 47.619 9.29 9.29 41.90 3.67
788 844 3.307410 GGTTGGTGTGATCTATGGTGTCA 60.307 47.826 0.00 0.00 0.00 3.58
789 845 3.270877 GGTTGGTGTGATCTATGGTGTC 58.729 50.000 0.00 0.00 0.00 3.67
790 846 2.354704 CGGTTGGTGTGATCTATGGTGT 60.355 50.000 0.00 0.00 0.00 4.16
791 847 2.279741 CGGTTGGTGTGATCTATGGTG 58.720 52.381 0.00 0.00 0.00 4.17
792 848 1.406887 GCGGTTGGTGTGATCTATGGT 60.407 52.381 0.00 0.00 0.00 3.55
793 849 1.299541 GCGGTTGGTGTGATCTATGG 58.700 55.000 0.00 0.00 0.00 2.74
794 850 2.022764 TGCGGTTGGTGTGATCTATG 57.977 50.000 0.00 0.00 0.00 2.23
795 851 2.170397 TGATGCGGTTGGTGTGATCTAT 59.830 45.455 0.00 0.00 0.00 1.98
796 852 1.552792 TGATGCGGTTGGTGTGATCTA 59.447 47.619 0.00 0.00 0.00 1.98
797 853 0.324614 TGATGCGGTTGGTGTGATCT 59.675 50.000 0.00 0.00 0.00 2.75
798 854 1.164411 TTGATGCGGTTGGTGTGATC 58.836 50.000 0.00 0.00 0.00 2.92
799 855 1.269448 GTTTGATGCGGTTGGTGTGAT 59.731 47.619 0.00 0.00 0.00 3.06
800 856 0.665835 GTTTGATGCGGTTGGTGTGA 59.334 50.000 0.00 0.00 0.00 3.58
801 857 0.667993 AGTTTGATGCGGTTGGTGTG 59.332 50.000 0.00 0.00 0.00 3.82
802 858 1.398692 AAGTTTGATGCGGTTGGTGT 58.601 45.000 0.00 0.00 0.00 4.16
803 859 2.507339 AAAGTTTGATGCGGTTGGTG 57.493 45.000 0.00 0.00 0.00 4.17
804 860 3.194062 CAAAAAGTTTGATGCGGTTGGT 58.806 40.909 0.00 0.00 0.00 3.67
805 861 3.194062 ACAAAAAGTTTGATGCGGTTGG 58.806 40.909 7.68 0.00 0.00 3.77
806 862 3.061271 CGACAAAAAGTTTGATGCGGTTG 60.061 43.478 7.68 0.00 0.00 3.77
807 863 3.112580 CGACAAAAAGTTTGATGCGGTT 58.887 40.909 7.68 0.00 0.00 4.44
808 864 2.542824 CCGACAAAAAGTTTGATGCGGT 60.543 45.455 18.55 3.25 32.35 5.68
809 865 2.050691 CCGACAAAAAGTTTGATGCGG 58.949 47.619 7.68 15.81 0.00 5.69
810 866 1.451651 GCCGACAAAAAGTTTGATGCG 59.548 47.619 7.68 7.71 0.00 4.73
811 867 2.468831 TGCCGACAAAAAGTTTGATGC 58.531 42.857 7.68 7.16 0.00 3.91
812 868 5.698832 TCTATGCCGACAAAAAGTTTGATG 58.301 37.500 7.68 0.00 0.00 3.07
813 869 5.957842 TCTATGCCGACAAAAAGTTTGAT 57.042 34.783 7.68 0.00 0.00 2.57
814 870 5.957842 ATCTATGCCGACAAAAAGTTTGA 57.042 34.783 7.68 0.00 0.00 2.69
815 871 8.687824 ATAAATCTATGCCGACAAAAAGTTTG 57.312 30.769 0.00 0.00 0.00 2.93
816 872 8.739972 AGATAAATCTATGCCGACAAAAAGTTT 58.260 29.630 0.00 0.00 34.85 2.66
817 873 8.184192 CAGATAAATCTATGCCGACAAAAAGTT 58.816 33.333 0.00 0.00 34.85 2.66
818 874 7.336931 ACAGATAAATCTATGCCGACAAAAAGT 59.663 33.333 0.00 0.00 34.85 2.66
819 875 7.697691 ACAGATAAATCTATGCCGACAAAAAG 58.302 34.615 0.00 0.00 34.85 2.27
820 876 7.465379 CGACAGATAAATCTATGCCGACAAAAA 60.465 37.037 0.00 0.00 34.85 1.94
821 877 6.019075 CGACAGATAAATCTATGCCGACAAAA 60.019 38.462 0.00 0.00 34.85 2.44
822 878 5.462068 CGACAGATAAATCTATGCCGACAAA 59.538 40.000 0.00 0.00 34.85 2.83
823 879 4.982295 CGACAGATAAATCTATGCCGACAA 59.018 41.667 0.00 0.00 34.85 3.18
824 880 4.546570 CGACAGATAAATCTATGCCGACA 58.453 43.478 0.00 0.00 34.85 4.35
825 881 3.921021 CCGACAGATAAATCTATGCCGAC 59.079 47.826 0.00 0.00 34.85 4.79
826 882 3.614150 GCCGACAGATAAATCTATGCCGA 60.614 47.826 0.00 0.00 34.85 5.54
827 883 2.668457 GCCGACAGATAAATCTATGCCG 59.332 50.000 0.00 0.00 34.85 5.69
828 884 3.664107 TGCCGACAGATAAATCTATGCC 58.336 45.455 0.00 0.00 34.85 4.40
829 885 5.409520 TCATTGCCGACAGATAAATCTATGC 59.590 40.000 0.00 0.00 34.85 3.14
830 886 6.128445 GGTCATTGCCGACAGATAAATCTATG 60.128 42.308 0.00 0.00 37.66 2.23
831 887 5.934625 GGTCATTGCCGACAGATAAATCTAT 59.065 40.000 0.00 0.00 37.66 1.98
832 888 5.070446 AGGTCATTGCCGACAGATAAATCTA 59.930 40.000 0.00 0.00 37.66 1.98
833 889 4.130118 GGTCATTGCCGACAGATAAATCT 58.870 43.478 0.00 0.00 37.66 2.40
834 890 4.130118 AGGTCATTGCCGACAGATAAATC 58.870 43.478 0.00 0.00 37.66 2.17
835 891 4.156455 AGGTCATTGCCGACAGATAAAT 57.844 40.909 0.00 0.00 37.66 1.40
836 892 3.627395 AGGTCATTGCCGACAGATAAA 57.373 42.857 0.00 0.00 37.66 1.40
837 893 3.627395 AAGGTCATTGCCGACAGATAA 57.373 42.857 0.00 0.00 37.66 1.75
838 894 3.531538 GAAAGGTCATTGCCGACAGATA 58.468 45.455 0.00 0.00 37.66 1.98
839 895 2.359900 GAAAGGTCATTGCCGACAGAT 58.640 47.619 0.00 0.00 37.66 2.90
840 896 1.610624 GGAAAGGTCATTGCCGACAGA 60.611 52.381 0.00 0.00 37.66 3.41
841 897 0.804989 GGAAAGGTCATTGCCGACAG 59.195 55.000 0.00 0.00 37.66 3.51
842 898 0.400213 AGGAAAGGTCATTGCCGACA 59.600 50.000 0.00 0.00 42.32 4.35
843 899 0.804989 CAGGAAAGGTCATTGCCGAC 59.195 55.000 0.00 0.00 42.32 4.79
844 900 0.322456 CCAGGAAAGGTCATTGCCGA 60.322 55.000 0.00 0.00 42.32 5.54
845 901 1.937546 GCCAGGAAAGGTCATTGCCG 61.938 60.000 0.00 0.00 42.32 5.69
846 902 0.899717 TGCCAGGAAAGGTCATTGCC 60.900 55.000 0.00 0.00 36.74 4.52
847 903 0.529378 CTGCCAGGAAAGGTCATTGC 59.471 55.000 0.00 0.00 0.00 3.56
848 904 1.180029 CCTGCCAGGAAAGGTCATTG 58.820 55.000 4.15 0.00 37.67 2.82
849 905 1.075601 TCCTGCCAGGAAAGGTCATT 58.924 50.000 12.03 0.00 42.51 2.57
850 906 2.791253 TCCTGCCAGGAAAGGTCAT 58.209 52.632 12.03 0.00 42.51 3.06
851 907 4.330056 TCCTGCCAGGAAAGGTCA 57.670 55.556 12.03 0.00 42.51 4.02
858 914 1.215673 CTAGGTCTAGTCCTGCCAGGA 59.784 57.143 17.67 10.05 43.43 3.86
859 915 1.698506 CTAGGTCTAGTCCTGCCAGG 58.301 60.000 17.67 3.69 38.41 4.45
860 916 1.215673 TCCTAGGTCTAGTCCTGCCAG 59.784 57.143 17.67 7.85 38.41 4.85
861 917 1.063867 GTCCTAGGTCTAGTCCTGCCA 60.064 57.143 17.67 0.00 38.41 4.92
862 918 1.063867 TGTCCTAGGTCTAGTCCTGCC 60.064 57.143 17.67 4.46 38.41 4.85
863 919 2.025898 GTGTCCTAGGTCTAGTCCTGC 58.974 57.143 17.67 6.75 38.41 4.85
864 920 3.655615 AGTGTCCTAGGTCTAGTCCTG 57.344 52.381 17.67 8.25 38.41 3.86
865 921 3.592427 TCAAGTGTCCTAGGTCTAGTCCT 59.408 47.826 13.30 13.30 41.20 3.85
866 922 3.965694 TCAAGTGTCCTAGGTCTAGTCC 58.034 50.000 9.08 0.00 0.00 3.85
867 923 4.142337 GCTTCAAGTGTCCTAGGTCTAGTC 60.142 50.000 9.08 0.00 0.00 2.59
868 924 3.764972 GCTTCAAGTGTCCTAGGTCTAGT 59.235 47.826 9.08 0.00 0.00 2.57
869 925 3.764434 TGCTTCAAGTGTCCTAGGTCTAG 59.236 47.826 9.08 2.75 0.00 2.43
870 926 3.774734 TGCTTCAAGTGTCCTAGGTCTA 58.225 45.455 9.08 0.00 0.00 2.59
871 927 2.609747 TGCTTCAAGTGTCCTAGGTCT 58.390 47.619 9.08 3.47 0.00 3.85
872 928 3.067833 GTTGCTTCAAGTGTCCTAGGTC 58.932 50.000 9.08 3.43 0.00 3.85
966 1027 1.227380 CCATAGAGCTCGCCACCAC 60.227 63.158 8.37 0.00 0.00 4.16
1000 1063 0.333312 AGGGACTCCTCTGACGTCAT 59.667 55.000 20.40 2.07 39.80 3.06
1186 1249 2.169769 TGTGGTCAACCTCTTCTTCGTT 59.830 45.455 0.10 0.00 36.82 3.85
1187 1250 1.760613 TGTGGTCAACCTCTTCTTCGT 59.239 47.619 0.10 0.00 36.82 3.85
1188 1251 2.526304 TGTGGTCAACCTCTTCTTCG 57.474 50.000 0.10 0.00 36.82 3.79
1191 1254 1.421268 TGCATGTGGTCAACCTCTTCT 59.579 47.619 0.10 0.00 36.82 2.85
1229 1292 3.950794 TTCCCGCCATCTGACACGC 62.951 63.158 0.00 0.00 0.00 5.34
1301 1364 1.478916 TCCGCCAATCTACGAACATCA 59.521 47.619 0.00 0.00 0.00 3.07
1302 1365 2.218953 TCCGCCAATCTACGAACATC 57.781 50.000 0.00 0.00 0.00 3.06
1341 1404 4.243008 TTTGTCACTGCCGGCGGA 62.243 61.111 41.14 25.51 0.00 5.54
1384 1447 2.339712 CGCAAAGGCCCAACAAGG 59.660 61.111 0.00 0.00 36.38 3.61
1500 1563 0.108804 CCACTCTGCCGTTACGACAT 60.109 55.000 6.24 0.00 0.00 3.06
1730 1793 0.458669 TCCATAACGTCGGAAGCTCC 59.541 55.000 0.00 0.00 0.00 4.70
1799 1862 2.938243 TGCCATAGCCCACCACCA 60.938 61.111 0.00 0.00 38.69 4.17
1828 1891 4.380531 TCTATGCGTTTCTTGGGATCATC 58.619 43.478 0.00 0.00 0.00 2.92
1833 1896 5.116180 CAGTAATCTATGCGTTTCTTGGGA 58.884 41.667 0.00 0.00 0.00 4.37
2025 2095 5.239306 CAGTTTCCTTTTCAGATACACTGCA 59.761 40.000 0.00 0.00 45.38 4.41
2126 2203 2.492484 TGAGAAAAGACGGGTAGAGAGC 59.508 50.000 0.00 0.00 0.00 4.09
2195 2272 6.042093 TGTTCTCTGAGAATTACTGTGAAGGT 59.958 38.462 21.86 0.00 36.50 3.50
2291 2374 4.331168 ACTTCTGACTCTAATCGCATTTGC 59.669 41.667 0.00 0.00 37.78 3.68
2296 2379 5.836821 ATGTACTTCTGACTCTAATCGCA 57.163 39.130 0.00 0.00 0.00 5.10
2389 2472 1.657822 GGCGCCTTTTGTTTCCAAAA 58.342 45.000 22.15 1.21 45.76 2.44
2406 2489 0.244721 AGAAAAGGCATTGAAGCGGC 59.755 50.000 0.00 0.00 34.64 6.53
2428 2511 1.741525 CCCACAAAGCCAACCACAG 59.258 57.895 0.00 0.00 0.00 3.66
2442 2525 0.398318 ACCTCAGTGAGAAAGCCCAC 59.602 55.000 22.09 0.00 0.00 4.61
2443 2526 1.140312 AACCTCAGTGAGAAAGCCCA 58.860 50.000 22.09 0.00 0.00 5.36
2450 2556 2.367567 GGTGTGGTAAACCTCAGTGAGA 59.632 50.000 22.09 0.00 39.84 3.27
2503 2609 5.084818 ACATGATGTGGTTAATCGTCTCA 57.915 39.130 0.00 0.00 0.00 3.27
2525 2631 2.356069 TGCACGCAAAGACACATGTTAA 59.644 40.909 0.00 0.00 0.00 2.01
2565 2671 0.324645 ATGATCCCCCAAAGCGCTTT 60.325 50.000 29.11 29.11 0.00 3.51
2566 2672 1.039233 CATGATCCCCCAAAGCGCTT 61.039 55.000 18.98 18.98 0.00 4.68
2595 2701 3.276857 ACAAGGTCTTCGTCTATAGCGA 58.723 45.455 13.05 13.05 36.51 4.93
2597 2703 6.563222 ATCTACAAGGTCTTCGTCTATAGC 57.437 41.667 0.00 0.00 0.00 2.97
2608 2714 2.616510 GCTGCACCAATCTACAAGGTCT 60.617 50.000 0.00 0.00 32.15 3.85
2662 2768 0.458025 GCGTTACGAGGGTCCTCAAG 60.458 60.000 9.62 4.43 42.86 3.02
2808 2914 9.765295 ACTCTATCCCTATTGTATATACGGTTT 57.235 33.333 8.33 0.00 0.00 3.27
2809 2915 9.765295 AACTCTATCCCTATTGTATATACGGTT 57.235 33.333 8.33 1.53 0.00 4.44
2810 2916 9.765295 AAACTCTATCCCTATTGTATATACGGT 57.235 33.333 8.33 2.24 0.00 4.83
2813 2919 9.819267 GCCAAACTCTATCCCTATTGTATATAC 57.181 37.037 5.89 5.89 0.00 1.47
2814 2920 8.692710 CGCCAAACTCTATCCCTATTGTATATA 58.307 37.037 0.00 0.00 0.00 0.86
2815 2921 7.180408 ACGCCAAACTCTATCCCTATTGTATAT 59.820 37.037 0.00 0.00 0.00 0.86
2816 2922 6.495872 ACGCCAAACTCTATCCCTATTGTATA 59.504 38.462 0.00 0.00 0.00 1.47
2817 2923 5.307196 ACGCCAAACTCTATCCCTATTGTAT 59.693 40.000 0.00 0.00 0.00 2.29
2818 2924 4.652421 ACGCCAAACTCTATCCCTATTGTA 59.348 41.667 0.00 0.00 0.00 2.41
2819 2925 3.454812 ACGCCAAACTCTATCCCTATTGT 59.545 43.478 0.00 0.00 0.00 2.71
2820 2926 3.809832 CACGCCAAACTCTATCCCTATTG 59.190 47.826 0.00 0.00 0.00 1.90
2821 2927 3.744530 GCACGCCAAACTCTATCCCTATT 60.745 47.826 0.00 0.00 0.00 1.73
2822 2928 2.224305 GCACGCCAAACTCTATCCCTAT 60.224 50.000 0.00 0.00 0.00 2.57
2823 2929 1.138266 GCACGCCAAACTCTATCCCTA 59.862 52.381 0.00 0.00 0.00 3.53
2824 2930 0.107654 GCACGCCAAACTCTATCCCT 60.108 55.000 0.00 0.00 0.00 4.20
2825 2931 1.429148 CGCACGCCAAACTCTATCCC 61.429 60.000 0.00 0.00 0.00 3.85
2826 2932 0.739813 ACGCACGCCAAACTCTATCC 60.740 55.000 0.00 0.00 0.00 2.59
2827 2933 0.370273 CACGCACGCCAAACTCTATC 59.630 55.000 0.00 0.00 0.00 2.08
2828 2934 0.320421 ACACGCACGCCAAACTCTAT 60.320 50.000 0.00 0.00 0.00 1.98
2829 2935 0.531090 AACACGCACGCCAAACTCTA 60.531 50.000 0.00 0.00 0.00 2.43
2830 2936 1.817941 AACACGCACGCCAAACTCT 60.818 52.632 0.00 0.00 0.00 3.24
2831 2937 1.654137 CAACACGCACGCCAAACTC 60.654 57.895 0.00 0.00 0.00 3.01
2832 2938 1.090625 TACAACACGCACGCCAAACT 61.091 50.000 0.00 0.00 0.00 2.66
2833 2939 0.248134 TTACAACACGCACGCCAAAC 60.248 50.000 0.00 0.00 0.00 2.93
2834 2940 0.663688 ATTACAACACGCACGCCAAA 59.336 45.000 0.00 0.00 0.00 3.28
2835 2941 0.236187 GATTACAACACGCACGCCAA 59.764 50.000 0.00 0.00 0.00 4.52
2836 2942 1.570347 GGATTACAACACGCACGCCA 61.570 55.000 0.00 0.00 0.00 5.69
2837 2943 1.133869 GGATTACAACACGCACGCC 59.866 57.895 0.00 0.00 0.00 5.68
2838 2944 0.179225 CAGGATTACAACACGCACGC 60.179 55.000 0.00 0.00 0.00 5.34
2839 2945 0.442310 CCAGGATTACAACACGCACG 59.558 55.000 0.00 0.00 0.00 5.34
2840 2946 1.519408 ACCAGGATTACAACACGCAC 58.481 50.000 0.00 0.00 0.00 5.34
2841 2947 2.264005 AACCAGGATTACAACACGCA 57.736 45.000 0.00 0.00 0.00 5.24
2842 2948 3.332034 ACTAACCAGGATTACAACACGC 58.668 45.455 0.00 0.00 0.00 5.34
2843 2949 5.579511 CCTAACTAACCAGGATTACAACACG 59.420 44.000 0.00 0.00 33.42 4.49
2844 2950 6.470278 ACCTAACTAACCAGGATTACAACAC 58.530 40.000 0.00 0.00 35.76 3.32
2845 2951 6.691255 ACCTAACTAACCAGGATTACAACA 57.309 37.500 0.00 0.00 35.76 3.33
2846 2952 6.938596 ACAACCTAACTAACCAGGATTACAAC 59.061 38.462 0.00 0.00 35.76 3.32
2847 2953 7.081857 ACAACCTAACTAACCAGGATTACAA 57.918 36.000 0.00 0.00 35.76 2.41
2848 2954 6.691255 ACAACCTAACTAACCAGGATTACA 57.309 37.500 0.00 0.00 35.76 2.41
2849 2955 6.938596 ACAACAACCTAACTAACCAGGATTAC 59.061 38.462 0.00 0.00 35.76 1.89
2850 2956 6.938030 CACAACAACCTAACTAACCAGGATTA 59.062 38.462 0.00 0.00 35.76 1.75
2851 2957 5.768164 CACAACAACCTAACTAACCAGGATT 59.232 40.000 0.00 0.00 35.76 3.01
2852 2958 5.313712 CACAACAACCTAACTAACCAGGAT 58.686 41.667 0.00 0.00 35.76 3.24
2853 2959 4.710324 CACAACAACCTAACTAACCAGGA 58.290 43.478 0.00 0.00 35.76 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.