Multiple sequence alignment - TraesCS6A01G036300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G036300 chr6A 100.000 5627 0 0 1 5627 17902658 17897032 0.000000e+00 10392.0
1 TraesCS6A01G036300 chr6A 80.913 482 74 11 2404 2883 17830061 17829596 1.150000e-96 364.0
2 TraesCS6A01G036300 chr6A 77.728 449 83 11 4169 4616 17876019 17875587 5.590000e-65 259.0
3 TraesCS6A01G036300 chr6A 82.731 249 42 1 3210 3458 17912318 17912071 2.640000e-53 220.0
4 TraesCS6A01G036300 chr6B 95.317 3011 113 11 1768 4757 30279713 30276710 0.000000e+00 4754.0
5 TraesCS6A01G036300 chr6B 89.620 1185 92 12 606 1768 30281028 30279853 0.000000e+00 1478.0
6 TraesCS6A01G036300 chr6B 96.883 385 11 1 2 386 708239805 708240188 1.320000e-180 643.0
7 TraesCS6A01G036300 chr6B 75.631 1030 209 30 3706 4703 30294777 30293758 1.830000e-129 473.0
8 TraesCS6A01G036300 chr6B 75.302 745 168 15 3737 4473 2303368 2302632 5.400000e-90 342.0
9 TraesCS6A01G036300 chr6B 84.512 297 43 3 3200 3495 30295468 30295174 1.980000e-74 291.0
10 TraesCS6A01G036300 chr6B 89.423 208 18 4 4880 5085 30276702 30276497 5.590000e-65 259.0
11 TraesCS6A01G036300 chr6B 88.158 152 14 4 5201 5350 30276362 30276213 1.610000e-40 178.0
12 TraesCS6A01G036300 chr6B 95.833 96 4 0 2 97 479071582 479071677 7.550000e-34 156.0
13 TraesCS6A01G036300 chr6D 93.349 2631 128 20 589 3182 17302106 17299486 0.000000e+00 3845.0
14 TraesCS6A01G036300 chr6D 95.163 2336 82 6 3179 5511 17299405 17297098 0.000000e+00 3659.0
15 TraesCS6A01G036300 chr6D 76.789 1495 280 51 3198 4681 17278886 17277448 0.000000e+00 776.0
16 TraesCS6A01G036300 chr6D 75.339 1476 295 49 3210 4659 17310640 17309208 0.000000e+00 645.0
17 TraesCS6A01G036300 chr6D 79.317 556 89 20 2404 2953 17233242 17232707 3.200000e-97 366.0
18 TraesCS6A01G036300 chr6D 75.676 518 97 18 3920 4432 17236968 17236475 1.220000e-56 231.0
19 TraesCS6A01G036300 chr6D 79.808 312 59 4 4365 4675 17210484 17210176 2.040000e-54 224.0
20 TraesCS6A01G036300 chr6D 80.142 141 21 7 248 386 470143701 470143836 1.290000e-16 99.0
21 TraesCS6A01G036300 chr6D 93.333 60 2 2 5557 5614 17297101 17297042 2.790000e-13 87.9
22 TraesCS6A01G036300 chr3A 97.143 385 10 1 2 386 704967971 704967588 0.000000e+00 649.0
23 TraesCS6A01G036300 chr3A 96.364 385 13 1 2 386 395759150 395758767 2.860000e-177 632.0
24 TraesCS6A01G036300 chr1B 97.143 385 10 1 2 386 305540361 305540744 0.000000e+00 649.0
25 TraesCS6A01G036300 chr1B 73.434 862 202 25 3732 4581 58872602 58873448 1.190000e-76 298.0
26 TraesCS6A01G036300 chr1B 87.500 56 7 0 250 305 636870880 636870935 1.310000e-06 65.8
27 TraesCS6A01G036300 chr5A 90.123 324 19 4 63 386 601719041 601719351 5.250000e-110 409.0
28 TraesCS6A01G036300 chr1D 74.438 845 194 20 3732 4567 39791083 39791914 1.500000e-90 344.0
29 TraesCS6A01G036300 chr7A 76.296 675 140 17 3909 4573 46254999 46255663 5.400000e-90 342.0
30 TraesCS6A01G036300 chr7A 87.209 86 11 0 224 309 83028950 83029035 1.290000e-16 99.0
31 TraesCS6A01G036300 chr5B 97.938 194 3 1 2 195 422111657 422111465 9.030000e-88 335.0
32 TraesCS6A01G036300 chr5B 86.905 84 11 0 772 855 661897327 661897244 1.670000e-15 95.3
33 TraesCS6A01G036300 chr5B 100.000 29 0 0 36 64 579516931 579516959 3.000000e-03 54.7
34 TraesCS6A01G036300 chr2D 84.877 324 27 3 63 386 142717378 142717679 1.970000e-79 307.0
35 TraesCS6A01G036300 chr5D 83.072 319 32 14 63 381 565698761 565698465 2.580000e-68 270.0
36 TraesCS6A01G036300 chr2B 83.851 161 23 1 3210 3370 40906613 40906456 3.510000e-32 150.0
37 TraesCS6A01G036300 chr2B 78.125 160 32 1 3210 3369 40857031 40857187 1.290000e-16 99.0
38 TraesCS6A01G036300 chr4A 91.525 59 5 0 245 303 481486738 481486680 1.300000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G036300 chr6A 17897032 17902658 5626 True 10392.000000 10392 100.000000 1 5627 1 chr6A.!!$R3 5626
1 TraesCS6A01G036300 chr6B 30276213 30281028 4815 True 1667.250000 4754 90.629500 606 5350 4 chr6B.!!$R2 4744
2 TraesCS6A01G036300 chr6B 30293758 30295468 1710 True 382.000000 473 80.071500 3200 4703 2 chr6B.!!$R3 1503
3 TraesCS6A01G036300 chr6B 2302632 2303368 736 True 342.000000 342 75.302000 3737 4473 1 chr6B.!!$R1 736
4 TraesCS6A01G036300 chr6D 17297042 17302106 5064 True 2530.633333 3845 93.948333 589 5614 3 chr6D.!!$R5 5025
5 TraesCS6A01G036300 chr6D 17277448 17278886 1438 True 776.000000 776 76.789000 3198 4681 1 chr6D.!!$R2 1483
6 TraesCS6A01G036300 chr6D 17309208 17310640 1432 True 645.000000 645 75.339000 3210 4659 1 chr6D.!!$R3 1449
7 TraesCS6A01G036300 chr6D 17232707 17236968 4261 True 298.500000 366 77.496500 2404 4432 2 chr6D.!!$R4 2028
8 TraesCS6A01G036300 chr1B 58872602 58873448 846 False 298.000000 298 73.434000 3732 4581 1 chr1B.!!$F1 849
9 TraesCS6A01G036300 chr1D 39791083 39791914 831 False 344.000000 344 74.438000 3732 4567 1 chr1D.!!$F1 835
10 TraesCS6A01G036300 chr7A 46254999 46255663 664 False 342.000000 342 76.296000 3909 4573 1 chr7A.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 336 0.099082 GAGTAAGAGGAGTGACGGCG 59.901 60.000 4.80 4.80 0.00 6.46 F
353 354 0.178970 CGCTAGGGTTAGGCTAGGGA 60.179 60.000 0.00 0.00 36.23 4.20 F
996 1012 0.178992 TGCAGGGAACAGTGGGAAAG 60.179 55.000 0.00 0.00 0.00 2.62 F
1170 1186 0.525761 ACGGGAAATTTGTCATGGCG 59.474 50.000 0.00 0.00 0.00 5.69 F
1538 1556 1.003839 CATATGGTGGCGGCGGTAT 60.004 57.895 9.78 0.45 0.00 2.73 F
3006 3190 1.251251 GCCTTCAGCAGACCACATTT 58.749 50.000 0.00 0.00 42.97 2.32 F
3176 3361 2.030946 GCTGCTGCTATAAAGTTCACCG 59.969 50.000 8.53 0.00 36.03 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 1538 0.248012 TATACCGCCGCCACCATATG 59.752 55.000 0.00 0.0 0.00 1.78 R
1801 1966 1.081708 GCGACCGGTTTTGCGAAAT 60.082 52.632 16.71 0.0 0.00 2.17 R
2365 2530 1.240256 GGGTTCCACATTTGCGTACA 58.760 50.000 0.00 0.0 0.00 2.90 R
3050 3234 0.478507 ACTACCCTTTTGCAGGCTGT 59.521 50.000 17.16 0.0 42.29 4.40 R
3189 3458 4.072131 CCTACAAAAGTTGCAGCTAGGAA 58.928 43.478 10.01 0.0 31.00 3.36 R
3996 4466 0.030908 GGACTAGCATCGGGACTTCG 59.969 60.000 0.00 0.0 0.00 3.79 R
5133 6075 0.105224 AAACACCACCGTCATCGTCA 59.895 50.000 0.00 0.0 35.01 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 4.101448 GGGAGAGCGCACACCCAT 62.101 66.667 29.79 0.00 41.72 4.00
75 76 2.512515 GGAGAGCGCACACCCATC 60.513 66.667 11.47 0.00 0.00 3.51
76 77 2.512515 GAGAGCGCACACCCATCC 60.513 66.667 11.47 0.00 0.00 3.51
77 78 4.457496 AGAGCGCACACCCATCCG 62.457 66.667 11.47 0.00 0.00 4.18
82 83 4.760047 GCACACCCATCCGCGTCT 62.760 66.667 4.92 0.00 0.00 4.18
83 84 2.815211 CACACCCATCCGCGTCTG 60.815 66.667 4.92 1.19 0.00 3.51
84 85 4.760047 ACACCCATCCGCGTCTGC 62.760 66.667 4.92 0.00 37.91 4.26
85 86 4.758251 CACCCATCCGCGTCTGCA 62.758 66.667 4.92 0.00 42.97 4.41
86 87 4.760047 ACCCATCCGCGTCTGCAC 62.760 66.667 4.92 0.00 42.97 4.57
95 96 3.490759 CGTCTGCACGCATCCACC 61.491 66.667 0.00 0.00 39.69 4.61
96 97 2.358615 GTCTGCACGCATCCACCA 60.359 61.111 0.00 0.00 0.00 4.17
97 98 1.746615 GTCTGCACGCATCCACCAT 60.747 57.895 0.00 0.00 0.00 3.55
98 99 1.450134 TCTGCACGCATCCACCATC 60.450 57.895 0.00 0.00 0.00 3.51
99 100 2.816360 CTGCACGCATCCACCATCG 61.816 63.158 0.00 0.00 0.00 3.84
100 101 4.241999 GCACGCATCCACCATCGC 62.242 66.667 0.00 0.00 0.00 4.58
104 105 2.969238 GCATCCACCATCGCGAGG 60.969 66.667 16.66 15.77 0.00 4.63
105 106 2.814604 CATCCACCATCGCGAGGA 59.185 61.111 24.13 19.68 34.12 3.71
106 107 1.143838 CATCCACCATCGCGAGGAA 59.856 57.895 24.13 10.96 33.17 3.36
107 108 0.877649 CATCCACCATCGCGAGGAAG 60.878 60.000 24.13 12.53 33.17 3.46
108 109 1.043116 ATCCACCATCGCGAGGAAGA 61.043 55.000 24.13 19.15 33.17 2.87
109 110 1.043116 TCCACCATCGCGAGGAAGAT 61.043 55.000 24.13 1.36 0.00 2.40
110 111 0.598680 CCACCATCGCGAGGAAGATC 60.599 60.000 24.13 0.00 0.00 2.75
111 112 0.598680 CACCATCGCGAGGAAGATCC 60.599 60.000 24.13 0.00 36.58 3.36
112 113 1.043116 ACCATCGCGAGGAAGATCCA 61.043 55.000 24.13 0.00 39.61 3.41
113 114 0.319728 CCATCGCGAGGAAGATCCAT 59.680 55.000 24.13 0.00 39.61 3.41
114 115 1.671261 CCATCGCGAGGAAGATCCATC 60.671 57.143 24.13 0.00 39.61 3.51
115 116 1.000171 CATCGCGAGGAAGATCCATCA 60.000 52.381 17.12 0.00 39.61 3.07
116 117 0.385751 TCGCGAGGAAGATCCATCAC 59.614 55.000 3.71 0.00 39.61 3.06
117 118 0.598680 CGCGAGGAAGATCCATCACC 60.599 60.000 0.00 0.00 39.61 4.02
118 119 0.465705 GCGAGGAAGATCCATCACCA 59.534 55.000 0.00 0.00 39.61 4.17
119 120 1.539929 GCGAGGAAGATCCATCACCAG 60.540 57.143 0.00 0.00 39.61 4.00
120 121 1.069823 CGAGGAAGATCCATCACCAGG 59.930 57.143 0.00 0.00 39.61 4.45
121 122 1.419387 GAGGAAGATCCATCACCAGGG 59.581 57.143 0.00 0.00 39.61 4.45
122 123 1.010046 AGGAAGATCCATCACCAGGGA 59.990 52.381 0.00 0.00 39.61 4.20
123 124 1.141858 GGAAGATCCATCACCAGGGAC 59.858 57.143 0.00 0.00 36.28 4.46
124 125 1.839994 GAAGATCCATCACCAGGGACA 59.160 52.381 0.00 0.00 35.67 4.02
125 126 1.504912 AGATCCATCACCAGGGACAG 58.495 55.000 0.00 0.00 35.67 3.51
126 127 0.179034 GATCCATCACCAGGGACAGC 60.179 60.000 0.00 0.00 35.67 4.40
127 128 1.639635 ATCCATCACCAGGGACAGCC 61.640 60.000 0.00 0.00 35.67 4.85
128 129 2.124983 CATCACCAGGGACAGCCG 60.125 66.667 0.00 0.00 33.83 5.52
129 130 4.101448 ATCACCAGGGACAGCCGC 62.101 66.667 0.00 0.00 33.83 6.53
146 147 4.457496 CCGCGTCCATCCAGCAGT 62.457 66.667 4.92 0.00 0.00 4.40
147 148 3.190849 CGCGTCCATCCAGCAGTG 61.191 66.667 0.00 0.00 0.00 3.66
148 149 2.821366 GCGTCCATCCAGCAGTGG 60.821 66.667 0.00 0.00 46.63 4.00
162 163 2.413765 GTGGATCTCCGCCTCGAC 59.586 66.667 0.00 0.00 40.56 4.20
163 164 2.833582 TGGATCTCCGCCTCGACC 60.834 66.667 0.00 0.00 39.43 4.79
164 165 3.967335 GGATCTCCGCCTCGACCG 61.967 72.222 0.00 0.00 0.00 4.79
165 166 4.632458 GATCTCCGCCTCGACCGC 62.632 72.222 0.00 0.00 0.00 5.68
192 193 4.569023 CGTCCTAGCGCATGCCGA 62.569 66.667 13.15 0.35 44.31 5.54
193 194 2.962253 GTCCTAGCGCATGCCGAC 60.962 66.667 13.15 6.45 44.31 4.79
194 195 4.569023 TCCTAGCGCATGCCGACG 62.569 66.667 13.15 0.00 44.31 5.12
195 196 4.873129 CCTAGCGCATGCCGACGT 62.873 66.667 13.15 0.00 44.31 4.34
196 197 3.620428 CTAGCGCATGCCGACGTG 61.620 66.667 13.15 0.00 44.31 4.49
202 203 4.101790 CATGCCGACGTGCAACCC 62.102 66.667 13.63 0.00 45.84 4.11
220 221 2.352422 GCATCTGTGCCCACCAGA 59.648 61.111 0.00 0.00 45.76 3.86
221 222 1.077212 GCATCTGTGCCCACCAGAT 60.077 57.895 0.00 0.00 45.76 2.90
222 223 1.099879 GCATCTGTGCCCACCAGATC 61.100 60.000 0.11 0.00 45.76 2.75
223 224 0.465097 CATCTGTGCCCACCAGATCC 60.465 60.000 0.11 0.00 33.84 3.36
224 225 0.915872 ATCTGTGCCCACCAGATCCA 60.916 55.000 0.00 0.00 30.63 3.41
225 226 1.077930 CTGTGCCCACCAGATCCAG 60.078 63.158 0.00 0.00 0.00 3.86
226 227 2.273449 GTGCCCACCAGATCCAGG 59.727 66.667 0.40 0.40 0.00 4.45
227 228 3.731728 TGCCCACCAGATCCAGGC 61.732 66.667 1.83 2.43 44.13 4.85
228 229 4.864334 GCCCACCAGATCCAGGCG 62.864 72.222 1.83 0.00 33.18 5.52
229 230 4.864334 CCCACCAGATCCAGGCGC 62.864 72.222 0.00 0.00 0.00 6.53
230 231 4.864334 CCACCAGATCCAGGCGCC 62.864 72.222 21.89 21.89 0.00 6.53
246 247 4.821589 CCGCCACGAGAGGAAGCC 62.822 72.222 0.00 0.00 0.00 4.35
247 248 4.821589 CGCCACGAGAGGAAGCCC 62.822 72.222 0.00 0.00 0.00 5.19
248 249 4.475135 GCCACGAGAGGAAGCCCC 62.475 72.222 0.00 0.00 0.00 5.80
249 250 4.148825 CCACGAGAGGAAGCCCCG 62.149 72.222 0.00 0.00 40.87 5.73
250 251 4.821589 CACGAGAGGAAGCCCCGC 62.822 72.222 0.00 0.00 40.87 6.13
331 332 1.487300 GGGGGAGTAAGAGGAGTGAC 58.513 60.000 0.00 0.00 0.00 3.67
332 333 1.104630 GGGGAGTAAGAGGAGTGACG 58.895 60.000 0.00 0.00 0.00 4.35
333 334 1.104630 GGGAGTAAGAGGAGTGACGG 58.895 60.000 0.00 0.00 0.00 4.79
334 335 0.456628 GGAGTAAGAGGAGTGACGGC 59.543 60.000 0.00 0.00 0.00 5.68
335 336 0.099082 GAGTAAGAGGAGTGACGGCG 59.901 60.000 4.80 4.80 0.00 6.46
336 337 1.516603 GTAAGAGGAGTGACGGCGC 60.517 63.158 6.90 0.00 0.00 6.53
337 338 1.677966 TAAGAGGAGTGACGGCGCT 60.678 57.895 2.53 2.53 37.63 5.92
338 339 0.393402 TAAGAGGAGTGACGGCGCTA 60.393 55.000 3.12 0.00 34.37 4.26
339 340 1.658686 AAGAGGAGTGACGGCGCTAG 61.659 60.000 3.12 4.36 34.37 3.42
340 341 3.127352 GAGGAGTGACGGCGCTAGG 62.127 68.421 3.12 0.00 34.37 3.02
341 342 4.208686 GGAGTGACGGCGCTAGGG 62.209 72.222 3.12 1.65 34.37 3.53
342 343 3.450115 GAGTGACGGCGCTAGGGT 61.450 66.667 3.12 0.00 34.37 4.34
343 344 2.995574 AGTGACGGCGCTAGGGTT 60.996 61.111 0.09 0.00 31.91 4.11
344 345 1.660560 GAGTGACGGCGCTAGGGTTA 61.661 60.000 3.12 0.00 34.37 2.85
345 346 1.226888 GTGACGGCGCTAGGGTTAG 60.227 63.158 6.90 3.08 0.00 2.34
346 347 2.416260 GACGGCGCTAGGGTTAGG 59.584 66.667 6.90 0.00 0.00 2.69
347 348 3.786901 GACGGCGCTAGGGTTAGGC 62.787 68.421 6.90 0.00 0.00 3.93
348 349 3.537874 CGGCGCTAGGGTTAGGCT 61.538 66.667 7.64 0.00 0.00 4.58
349 350 2.198287 CGGCGCTAGGGTTAGGCTA 61.198 63.158 7.64 0.00 0.00 3.93
350 351 1.666580 GGCGCTAGGGTTAGGCTAG 59.333 63.158 7.64 0.00 0.00 3.42
351 352 1.666580 GCGCTAGGGTTAGGCTAGG 59.333 63.158 8.77 0.00 0.00 3.02
352 353 1.817911 GCGCTAGGGTTAGGCTAGGG 61.818 65.000 8.77 0.00 36.91 3.53
353 354 0.178970 CGCTAGGGTTAGGCTAGGGA 60.179 60.000 0.00 0.00 36.23 4.20
354 355 1.340088 GCTAGGGTTAGGCTAGGGAC 58.660 60.000 0.00 0.00 0.00 4.46
355 356 1.618487 CTAGGGTTAGGCTAGGGACG 58.382 60.000 0.00 0.00 0.00 4.79
356 357 0.468771 TAGGGTTAGGCTAGGGACGC 60.469 60.000 4.27 4.27 0.00 5.19
400 401 3.967715 GGGACGGAGCAGTTTGTC 58.032 61.111 0.00 0.00 0.00 3.18
401 402 1.070786 GGGACGGAGCAGTTTGTCA 59.929 57.895 0.00 0.00 33.04 3.58
402 403 1.228657 GGGACGGAGCAGTTTGTCAC 61.229 60.000 0.00 0.00 33.04 3.67
403 404 0.531974 GGACGGAGCAGTTTGTCACA 60.532 55.000 0.00 0.00 33.04 3.58
404 405 1.512926 GACGGAGCAGTTTGTCACAT 58.487 50.000 0.00 0.00 0.00 3.21
405 406 2.611971 GGACGGAGCAGTTTGTCACATA 60.612 50.000 0.00 0.00 33.04 2.29
406 407 3.064207 GACGGAGCAGTTTGTCACATAA 58.936 45.455 0.00 0.00 0.00 1.90
407 408 3.067106 ACGGAGCAGTTTGTCACATAAG 58.933 45.455 0.00 0.00 0.00 1.73
408 409 3.244078 ACGGAGCAGTTTGTCACATAAGA 60.244 43.478 0.00 0.00 0.00 2.10
409 410 3.745975 CGGAGCAGTTTGTCACATAAGAA 59.254 43.478 0.00 0.00 0.00 2.52
410 411 4.377431 CGGAGCAGTTTGTCACATAAGAAC 60.377 45.833 0.00 0.00 0.00 3.01
411 412 4.083271 GGAGCAGTTTGTCACATAAGAACC 60.083 45.833 0.00 0.00 0.00 3.62
412 413 3.498397 AGCAGTTTGTCACATAAGAACCG 59.502 43.478 0.00 0.00 0.00 4.44
413 414 3.364964 GCAGTTTGTCACATAAGAACCGG 60.365 47.826 0.00 0.00 0.00 5.28
414 415 3.813166 CAGTTTGTCACATAAGAACCGGT 59.187 43.478 0.00 0.00 0.00 5.28
415 416 4.274950 CAGTTTGTCACATAAGAACCGGTT 59.725 41.667 22.50 22.50 0.00 4.44
416 417 5.467399 CAGTTTGTCACATAAGAACCGGTTA 59.533 40.000 22.33 5.02 0.00 2.85
417 418 5.467735 AGTTTGTCACATAAGAACCGGTTAC 59.532 40.000 22.33 12.72 0.00 2.50
418 419 4.877378 TGTCACATAAGAACCGGTTACT 57.123 40.909 22.33 16.04 0.00 2.24
419 420 5.981088 TGTCACATAAGAACCGGTTACTA 57.019 39.130 22.33 14.78 0.00 1.82
420 421 6.534475 TGTCACATAAGAACCGGTTACTAT 57.466 37.500 22.33 16.43 0.00 2.12
421 422 6.938507 TGTCACATAAGAACCGGTTACTATT 58.061 36.000 22.33 14.85 0.00 1.73
422 423 6.814644 TGTCACATAAGAACCGGTTACTATTG 59.185 38.462 22.33 18.99 0.00 1.90
423 424 6.815142 GTCACATAAGAACCGGTTACTATTGT 59.185 38.462 22.33 19.53 0.00 2.71
424 425 7.332678 GTCACATAAGAACCGGTTACTATTGTT 59.667 37.037 22.33 4.41 0.00 2.83
425 426 7.332430 TCACATAAGAACCGGTTACTATTGTTG 59.668 37.037 22.33 14.61 0.00 3.33
426 427 7.332430 CACATAAGAACCGGTTACTATTGTTGA 59.668 37.037 22.33 0.00 0.00 3.18
427 428 7.879160 ACATAAGAACCGGTTACTATTGTTGAA 59.121 33.333 22.33 0.00 0.00 2.69
428 429 8.889717 CATAAGAACCGGTTACTATTGTTGAAT 58.110 33.333 22.33 3.85 0.00 2.57
429 430 6.737254 AGAACCGGTTACTATTGTTGAATG 57.263 37.500 22.33 0.00 0.00 2.67
430 431 6.469410 AGAACCGGTTACTATTGTTGAATGA 58.531 36.000 22.33 0.00 0.00 2.57
431 432 7.110155 AGAACCGGTTACTATTGTTGAATGAT 58.890 34.615 22.33 0.00 0.00 2.45
432 433 7.610305 AGAACCGGTTACTATTGTTGAATGATT 59.390 33.333 22.33 0.00 0.00 2.57
433 434 7.696992 ACCGGTTACTATTGTTGAATGATTT 57.303 32.000 0.00 0.00 0.00 2.17
434 435 8.795842 ACCGGTTACTATTGTTGAATGATTTA 57.204 30.769 0.00 0.00 0.00 1.40
435 436 8.671028 ACCGGTTACTATTGTTGAATGATTTAC 58.329 33.333 0.00 0.00 0.00 2.01
436 437 8.889717 CCGGTTACTATTGTTGAATGATTTACT 58.110 33.333 0.00 0.00 0.00 2.24
437 438 9.916397 CGGTTACTATTGTTGAATGATTTACTC 57.084 33.333 0.00 0.00 0.00 2.59
459 460 7.694886 ACTCTACTTTTAAATCGCTAATTGGC 58.305 34.615 3.26 3.26 0.00 4.52
460 461 7.553044 ACTCTACTTTTAAATCGCTAATTGGCT 59.447 33.333 12.29 0.00 0.00 4.75
461 462 8.951787 TCTACTTTTAAATCGCTAATTGGCTA 57.048 30.769 12.29 0.79 0.00 3.93
462 463 9.555727 TCTACTTTTAAATCGCTAATTGGCTAT 57.444 29.630 12.29 3.48 0.00 2.97
465 466 9.338622 ACTTTTAAATCGCTAATTGGCTATACT 57.661 29.630 12.29 0.93 0.00 2.12
472 473 9.946165 AATCGCTAATTGGCTATACTTTTAAAC 57.054 29.630 12.29 0.00 0.00 2.01
473 474 7.922837 TCGCTAATTGGCTATACTTTTAAACC 58.077 34.615 12.29 0.00 0.00 3.27
474 475 7.771826 TCGCTAATTGGCTATACTTTTAAACCT 59.228 33.333 12.29 0.00 0.00 3.50
475 476 7.855904 CGCTAATTGGCTATACTTTTAAACCTG 59.144 37.037 12.29 0.00 0.00 4.00
476 477 8.135529 GCTAATTGGCTATACTTTTAAACCTGG 58.864 37.037 6.53 0.00 0.00 4.45
477 478 5.907866 TTGGCTATACTTTTAAACCTGGC 57.092 39.130 0.00 0.00 0.00 4.85
478 479 5.187621 TGGCTATACTTTTAAACCTGGCT 57.812 39.130 0.00 0.00 0.00 4.75
479 480 6.316280 TGGCTATACTTTTAAACCTGGCTA 57.684 37.500 0.00 0.00 0.00 3.93
480 481 6.354130 TGGCTATACTTTTAAACCTGGCTAG 58.646 40.000 0.00 0.00 0.00 3.42
481 482 5.238868 GGCTATACTTTTAAACCTGGCTAGC 59.761 44.000 6.04 6.04 0.00 3.42
482 483 5.820947 GCTATACTTTTAAACCTGGCTAGCA 59.179 40.000 18.24 1.68 0.00 3.49
483 484 6.317893 GCTATACTTTTAAACCTGGCTAGCAA 59.682 38.462 18.24 3.74 0.00 3.91
484 485 7.148137 GCTATACTTTTAAACCTGGCTAGCAAA 60.148 37.037 18.24 3.46 0.00 3.68
485 486 5.862678 ACTTTTAAACCTGGCTAGCAAAA 57.137 34.783 18.24 11.30 0.00 2.44
486 487 6.419484 ACTTTTAAACCTGGCTAGCAAAAT 57.581 33.333 18.24 0.00 0.00 1.82
487 488 7.533289 ACTTTTAAACCTGGCTAGCAAAATA 57.467 32.000 18.24 0.00 0.00 1.40
488 489 7.602753 ACTTTTAAACCTGGCTAGCAAAATAG 58.397 34.615 18.24 3.44 0.00 1.73
489 490 7.232737 ACTTTTAAACCTGGCTAGCAAAATAGT 59.767 33.333 18.24 4.07 0.00 2.12
490 491 6.509418 TTAAACCTGGCTAGCAAAATAGTG 57.491 37.500 18.24 0.00 0.00 2.74
491 492 4.301072 AACCTGGCTAGCAAAATAGTGA 57.699 40.909 18.24 0.00 0.00 3.41
492 493 4.510167 ACCTGGCTAGCAAAATAGTGAT 57.490 40.909 18.24 0.00 0.00 3.06
493 494 4.455606 ACCTGGCTAGCAAAATAGTGATC 58.544 43.478 18.24 0.00 0.00 2.92
494 495 3.496130 CCTGGCTAGCAAAATAGTGATCG 59.504 47.826 18.24 0.00 0.00 3.69
495 496 4.122776 CTGGCTAGCAAAATAGTGATCGT 58.877 43.478 18.24 0.00 0.00 3.73
496 497 4.119862 TGGCTAGCAAAATAGTGATCGTC 58.880 43.478 18.24 0.00 0.00 4.20
497 498 4.141937 TGGCTAGCAAAATAGTGATCGTCT 60.142 41.667 18.24 0.00 0.00 4.18
498 499 5.068591 TGGCTAGCAAAATAGTGATCGTCTA 59.931 40.000 18.24 0.99 0.00 2.59
499 500 5.983720 GGCTAGCAAAATAGTGATCGTCTAA 59.016 40.000 18.24 0.00 0.00 2.10
500 501 6.144724 GGCTAGCAAAATAGTGATCGTCTAAG 59.855 42.308 18.24 0.00 0.00 2.18
501 502 6.144724 GCTAGCAAAATAGTGATCGTCTAAGG 59.855 42.308 10.63 0.00 0.00 2.69
502 503 5.978814 AGCAAAATAGTGATCGTCTAAGGT 58.021 37.500 2.39 0.00 0.00 3.50
503 504 6.407202 AGCAAAATAGTGATCGTCTAAGGTT 58.593 36.000 2.39 0.00 0.00 3.50
504 505 7.553334 AGCAAAATAGTGATCGTCTAAGGTTA 58.447 34.615 2.39 0.00 0.00 2.85
505 506 8.204836 AGCAAAATAGTGATCGTCTAAGGTTAT 58.795 33.333 2.39 0.00 0.00 1.89
506 507 9.472361 GCAAAATAGTGATCGTCTAAGGTTATA 57.528 33.333 2.39 0.00 0.00 0.98
511 512 7.876936 AGTGATCGTCTAAGGTTATACTTGA 57.123 36.000 0.00 0.00 32.02 3.02
512 513 7.932335 AGTGATCGTCTAAGGTTATACTTGAG 58.068 38.462 0.00 0.00 32.02 3.02
513 514 7.556996 AGTGATCGTCTAAGGTTATACTTGAGT 59.443 37.037 0.00 0.00 32.02 3.41
514 515 8.834465 GTGATCGTCTAAGGTTATACTTGAGTA 58.166 37.037 0.00 0.00 34.67 2.59
515 516 9.399797 TGATCGTCTAAGGTTATACTTGAGTAA 57.600 33.333 0.00 0.00 33.76 2.24
516 517 9.662545 GATCGTCTAAGGTTATACTTGAGTAAC 57.337 37.037 0.00 0.00 33.76 2.50
517 518 8.798859 TCGTCTAAGGTTATACTTGAGTAACT 57.201 34.615 0.00 0.00 33.76 2.24
518 519 9.890629 TCGTCTAAGGTTATACTTGAGTAACTA 57.109 33.333 0.00 0.00 33.76 2.24
520 521 9.949174 GTCTAAGGTTATACTTGAGTAACTAGC 57.051 37.037 0.00 0.00 33.76 3.42
521 522 9.917887 TCTAAGGTTATACTTGAGTAACTAGCT 57.082 33.333 0.00 0.00 33.76 3.32
523 524 8.826293 AAGGTTATACTTGAGTAACTAGCTCT 57.174 34.615 0.00 0.00 33.76 4.09
524 525 8.454570 AGGTTATACTTGAGTAACTAGCTCTC 57.545 38.462 0.00 0.00 33.76 3.20
525 526 7.503230 AGGTTATACTTGAGTAACTAGCTCTCC 59.497 40.741 0.00 0.00 33.76 3.71
526 527 7.255555 GGTTATACTTGAGTAACTAGCTCTCCC 60.256 44.444 0.00 0.00 33.76 4.30
527 528 3.018149 ACTTGAGTAACTAGCTCTCCCG 58.982 50.000 0.00 0.00 34.30 5.14
528 529 3.280295 CTTGAGTAACTAGCTCTCCCGA 58.720 50.000 0.00 0.00 34.30 5.14
529 530 3.579534 TGAGTAACTAGCTCTCCCGAT 57.420 47.619 0.00 0.00 34.30 4.18
530 531 4.701651 TGAGTAACTAGCTCTCCCGATA 57.298 45.455 0.00 0.00 34.30 2.92
531 532 5.045012 TGAGTAACTAGCTCTCCCGATAA 57.955 43.478 0.00 0.00 34.30 1.75
532 533 5.443283 TGAGTAACTAGCTCTCCCGATAAA 58.557 41.667 0.00 0.00 34.30 1.40
533 534 5.889853 TGAGTAACTAGCTCTCCCGATAAAA 59.110 40.000 0.00 0.00 34.30 1.52
534 535 6.379133 TGAGTAACTAGCTCTCCCGATAAAAA 59.621 38.462 0.00 0.00 34.30 1.94
571 572 8.596271 AAAAACTTGAGAAACTAGCTAGAGAC 57.404 34.615 27.45 15.72 0.00 3.36
572 573 5.554822 ACTTGAGAAACTAGCTAGAGACG 57.445 43.478 27.45 1.17 0.00 4.18
573 574 5.247084 ACTTGAGAAACTAGCTAGAGACGA 58.753 41.667 27.45 11.43 0.00 4.20
574 575 5.353123 ACTTGAGAAACTAGCTAGAGACGAG 59.647 44.000 27.45 20.03 0.00 4.18
575 576 5.087391 TGAGAAACTAGCTAGAGACGAGA 57.913 43.478 27.45 2.67 0.00 4.04
576 577 5.676552 TGAGAAACTAGCTAGAGACGAGAT 58.323 41.667 27.45 0.00 0.00 2.75
577 578 5.525745 TGAGAAACTAGCTAGAGACGAGATG 59.474 44.000 27.45 0.00 0.00 2.90
578 579 4.274950 AGAAACTAGCTAGAGACGAGATGC 59.725 45.833 27.45 4.48 0.00 3.91
579 580 3.201353 ACTAGCTAGAGACGAGATGCA 57.799 47.619 27.45 0.00 0.00 3.96
580 581 3.750371 ACTAGCTAGAGACGAGATGCAT 58.250 45.455 27.45 0.00 0.00 3.96
581 582 3.751175 ACTAGCTAGAGACGAGATGCATC 59.249 47.826 27.45 19.37 0.00 3.91
582 583 2.862541 AGCTAGAGACGAGATGCATCT 58.137 47.619 29.09 29.09 40.50 2.90
628 629 7.327761 GCTAGTAGTTGTCTTATTGTCAACGAA 59.672 37.037 0.00 0.00 45.03 3.85
635 636 5.525745 TGTCTTATTGTCAACGAACACACAT 59.474 36.000 0.00 0.00 0.00 3.21
639 640 8.279800 TCTTATTGTCAACGAACACACATAAAG 58.720 33.333 0.00 0.00 0.00 1.85
671 672 6.377327 AATAGTTGTGGTGTCTTGTTTCAG 57.623 37.500 0.00 0.00 0.00 3.02
686 687 4.149598 TGTTTCAGAGGTACTGCACTCTA 58.850 43.478 4.40 0.00 45.38 2.43
690 691 4.771903 TCAGAGGTACTGCACTCTAGTAG 58.228 47.826 4.40 0.00 45.38 2.57
717 718 5.999205 TGCAAATGGATACCAAAATCAGT 57.001 34.783 0.00 0.00 36.95 3.41
722 723 8.345565 GCAAATGGATACCAAAATCAGTACTAG 58.654 37.037 0.00 0.00 36.95 2.57
770 784 1.819632 GGAGCCAACATACCTGCCG 60.820 63.158 0.00 0.00 0.00 5.69
827 841 3.852286 TGATGATCAACAAATTGGCAGC 58.148 40.909 2.74 0.00 36.39 5.25
835 849 1.836604 AAATTGGCAGCGGTGGGTT 60.837 52.632 17.54 0.00 0.00 4.11
857 871 4.185467 TGCGGTTGTTTATAAGGTACGA 57.815 40.909 0.00 0.00 0.00 3.43
866 880 9.591792 GTTGTTTATAAGGTACGAATTACTCCT 57.408 33.333 0.00 0.00 0.00 3.69
868 882 8.752187 TGTTTATAAGGTACGAATTACTCCTGT 58.248 33.333 0.00 0.00 0.00 4.00
871 885 9.807649 TTATAAGGTACGAATTACTCCTGTTTC 57.192 33.333 0.00 0.00 0.00 2.78
872 886 5.082251 AGGTACGAATTACTCCTGTTTCC 57.918 43.478 0.00 0.00 0.00 3.13
876 890 7.038799 AGGTACGAATTACTCCTGTTTCCTAAA 60.039 37.037 0.00 0.00 0.00 1.85
880 894 7.387122 ACGAATTACTCCTGTTTCCTAAACTTC 59.613 37.037 4.35 0.00 41.90 3.01
894 908 6.817184 TCCTAAACTTCCTCATTCCTTATCG 58.183 40.000 0.00 0.00 0.00 2.92
903 917 6.749139 TCCTCATTCCTTATCGTAGTTGATG 58.251 40.000 0.00 0.00 0.00 3.07
906 920 7.810282 CCTCATTCCTTATCGTAGTTGATGTAG 59.190 40.741 0.00 0.00 0.00 2.74
946 962 2.228925 CATCACAATCACACCACCACA 58.771 47.619 0.00 0.00 0.00 4.17
947 963 1.965935 TCACAATCACACCACCACAG 58.034 50.000 0.00 0.00 0.00 3.66
954 970 3.279116 CACCACCACAGGCACACG 61.279 66.667 0.00 0.00 0.00 4.49
959 975 2.049185 ACCACAGGCACACGCAAAA 61.049 52.632 0.00 0.00 41.24 2.44
960 976 1.363443 CCACAGGCACACGCAAAAT 59.637 52.632 0.00 0.00 41.24 1.82
969 985 3.181545 GGCACACGCAAAATTAATTCACG 60.182 43.478 0.10 8.29 41.24 4.35
975 991 4.442733 ACGCAAAATTAATTCACGTTGTGG 59.557 37.500 20.06 11.91 33.87 4.17
987 1003 1.827789 GTTGTGGCTGCAGGGAACA 60.828 57.895 17.12 0.00 0.00 3.18
996 1012 0.178992 TGCAGGGAACAGTGGGAAAG 60.179 55.000 0.00 0.00 0.00 2.62
1030 1046 5.560953 GCTGTGAAGAAGTTGTCCATAACAC 60.561 44.000 0.00 0.00 37.70 3.32
1035 1051 6.998074 TGAAGAAGTTGTCCATAACACTTGAT 59.002 34.615 0.00 0.00 37.70 2.57
1058 1074 8.789762 TGATATGCATGAGAATAAATTCCACAG 58.210 33.333 10.16 0.00 37.51 3.66
1065 1081 7.020827 TGAGAATAAATTCCACAGAGAGGTT 57.979 36.000 0.00 0.00 37.51 3.50
1170 1186 0.525761 ACGGGAAATTTGTCATGGCG 59.474 50.000 0.00 0.00 0.00 5.69
1359 1377 2.506217 GGTCACGATCGAGCGCAA 60.506 61.111 24.71 8.61 33.86 4.85
1537 1555 2.423874 CATATGGTGGCGGCGGTA 59.576 61.111 9.78 0.00 0.00 4.02
1538 1556 1.003839 CATATGGTGGCGGCGGTAT 60.004 57.895 9.78 0.45 0.00 2.73
1591 1609 2.352805 GGTGAGGCCAGGGTCAAG 59.647 66.667 5.01 0.00 37.17 3.02
1627 1645 5.084519 TCACTATTGTACTGTCAGGAAGGT 58.915 41.667 4.53 0.00 0.00 3.50
1722 1740 2.302157 GGAGCTTAGTGTACACCAACCT 59.698 50.000 22.28 11.76 0.00 3.50
1764 1789 6.012337 AGAGTAGGAGATCTCTTCATGTGA 57.988 41.667 21.81 0.00 37.72 3.58
1816 1981 3.315749 TCTGTTTATTTCGCAAAACCGGT 59.684 39.130 0.00 0.00 35.23 5.28
2034 2199 3.073798 AGTGTTGGTCCATTACATGTGGA 59.926 43.478 9.11 3.74 43.26 4.02
2070 2235 4.491676 GTGATCAAAACTACTAGCGTCCA 58.508 43.478 0.00 0.00 0.00 4.02
2127 2292 9.352784 GTGCTAATCTATGTGAGAAGATATGTC 57.647 37.037 0.00 0.00 37.85 3.06
2138 2303 9.521503 TGTGAGAAGATATGTCTATTTTCTTCG 57.478 33.333 0.00 0.00 38.34 3.79
2260 2425 5.952064 GCATATTTTAACACTGAACGTCTCG 59.048 40.000 0.00 0.00 0.00 4.04
2269 2434 5.957798 ACACTGAACGTCTCGGATTTATTA 58.042 37.500 11.81 0.00 34.17 0.98
2336 2501 5.402997 TGAAAATGCTTTGTATGGCATGA 57.597 34.783 10.98 0.00 46.70 3.07
2401 2566 1.604378 CCCTTTCCTCCGCAGATGT 59.396 57.895 0.00 0.00 0.00 3.06
2520 2685 5.304686 TCTCAAGCCCGGAAATATATTGT 57.695 39.130 0.73 0.00 0.00 2.71
2540 2705 3.123804 GTTAGCTGATCACATGGTACCG 58.876 50.000 7.57 0.00 0.00 4.02
2690 2874 8.202745 AGCTCTTATTTACTCTGCACATTAAC 57.797 34.615 0.00 0.00 0.00 2.01
2767 2951 2.884012 AGGACAATTCACATTTGCGTCA 59.116 40.909 0.00 0.00 0.00 4.35
2963 3147 3.881089 CCCAAACAAGAACGGTCTAAACT 59.119 43.478 1.80 0.00 32.16 2.66
2975 3159 7.341256 AGAACGGTCTAAACTATCATCCACTTA 59.659 37.037 0.00 0.00 29.93 2.24
3006 3190 1.251251 GCCTTCAGCAGACCACATTT 58.749 50.000 0.00 0.00 42.97 2.32
3050 3234 4.500375 CGAGCACTAAGATCACATCCATGA 60.500 45.833 0.00 0.00 31.47 3.07
3130 3315 2.857748 GCGCTTATAAATGCAAACCACC 59.142 45.455 0.00 0.00 0.00 4.61
3151 3336 5.009010 CACCTTTTGCATCTGTAGTTGAGTT 59.991 40.000 0.00 0.00 0.00 3.01
3152 3337 5.594317 ACCTTTTGCATCTGTAGTTGAGTTT 59.406 36.000 0.00 0.00 0.00 2.66
3176 3361 2.030946 GCTGCTGCTATAAAGTTCACCG 59.969 50.000 8.53 0.00 36.03 4.94
3178 3363 3.000041 TGCTGCTATAAAGTTCACCGTG 59.000 45.455 0.00 0.00 0.00 4.94
3203 3472 6.840780 ACATTTTAATTCCTAGCTGCAACT 57.159 33.333 1.02 0.00 0.00 3.16
3464 3733 4.050553 TGCCAAGAGAAAAATTCAAAGCG 58.949 39.130 0.00 0.00 0.00 4.68
3523 3828 2.358898 GCTGAAACAGAAGGACTTGCAA 59.641 45.455 0.00 0.00 32.44 4.08
3657 3965 4.143986 AGGTGCAAGTATTTCTAGCTCC 57.856 45.455 0.00 0.00 38.70 4.70
4058 4528 4.265073 AGCCTCCATTACATTCTTCACAC 58.735 43.478 0.00 0.00 0.00 3.82
4111 4581 4.083057 TGCGATTAAGTATTGCTGCAACAA 60.083 37.500 18.51 4.77 43.10 2.83
4112 4582 5.036737 GCGATTAAGTATTGCTGCAACAAT 58.963 37.500 18.51 18.62 42.73 2.71
4126 4596 2.372264 CAACAATGGCAGGTGCTCTAT 58.628 47.619 1.26 0.00 41.70 1.98
4253 4723 5.595885 CATATCAAGGTTGATCGTGAGAGT 58.404 41.667 8.49 0.00 44.17 3.24
4482 5105 4.036380 ACCGAGTTGTTTGACAAGGAAATC 59.964 41.667 5.04 0.00 39.00 2.17
4483 5106 4.036262 CCGAGTTGTTTGACAAGGAAATCA 59.964 41.667 8.51 0.00 39.00 2.57
4681 5496 3.802139 ACGTATGATGTGTTGGATAAGCG 59.198 43.478 0.00 0.00 0.00 4.68
4700 5515 3.133003 AGCGTCTGATAGGCACAACTATT 59.867 43.478 0.00 0.00 41.54 1.73
4703 5518 5.050972 GCGTCTGATAGGCACAACTATTTAC 60.051 44.000 0.00 0.00 38.86 2.01
4704 5519 6.040247 CGTCTGATAGGCACAACTATTTACA 58.960 40.000 0.00 0.00 33.95 2.41
4806 5621 1.641577 CCTCCGGTAAGAAAAGCTCG 58.358 55.000 0.00 0.00 0.00 5.03
4864 5763 3.063997 GTCTGGATTTGTGGCTTACATCG 59.936 47.826 0.00 0.00 39.48 3.84
4870 5769 5.527582 GGATTTGTGGCTTACATCGTATTCT 59.472 40.000 0.00 0.00 39.48 2.40
4893 5792 4.402056 ACCGTCCTTATGATGTTAGTGG 57.598 45.455 0.00 0.00 0.00 4.00
4927 5847 4.270325 GGACTGTTTACTGTTGACACTGTC 59.730 45.833 1.86 1.86 36.53 3.51
5074 5996 1.456923 CACACACGCATACAGTCTGTG 59.543 52.381 16.03 0.76 33.58 3.66
5133 6075 2.037144 AGTCCACCGTCTTGTGTTACT 58.963 47.619 0.00 0.00 34.35 2.24
5197 6169 0.611062 CCTACGGCCCGATATCCAGA 60.611 60.000 11.71 0.00 0.00 3.86
5327 6327 7.727634 AGACTTGGATATGTCTGATGTGATCTA 59.272 37.037 0.00 0.00 39.18 1.98
5329 6329 7.508636 ACTTGGATATGTCTGATGTGATCTACT 59.491 37.037 0.00 0.00 0.00 2.57
5330 6330 8.940397 TTGGATATGTCTGATGTGATCTACTA 57.060 34.615 0.00 0.00 0.00 1.82
5376 6377 3.206246 ACACGGCACCACCAAACG 61.206 61.111 0.00 0.00 39.03 3.60
5472 6473 0.110486 ATTCTTGGGCTGTCAACCGT 59.890 50.000 0.00 0.00 0.00 4.83
5483 6484 2.912025 CAACCGTTTGGCCAGCCT 60.912 61.111 5.11 0.00 39.70 4.58
5527 6528 8.568732 TCAAATTTGAACTAAATCCACGAAAC 57.431 30.769 18.45 0.00 38.01 2.78
5528 6529 8.410141 TCAAATTTGAACTAAATCCACGAAACT 58.590 29.630 18.45 0.00 38.01 2.66
5529 6530 9.030301 CAAATTTGAACTAAATCCACGAAACTT 57.970 29.630 13.08 0.00 38.01 2.66
5530 6531 9.594478 AAATTTGAACTAAATCCACGAAACTTT 57.406 25.926 0.00 0.00 38.01 2.66
5531 6532 9.594478 AATTTGAACTAAATCCACGAAACTTTT 57.406 25.926 0.00 0.00 38.01 2.27
5532 6533 8.989653 TTTGAACTAAATCCACGAAACTTTTT 57.010 26.923 0.00 0.00 0.00 1.94
5552 7199 4.301072 TTTTGGATTGGAGGGAGTACTG 57.699 45.455 0.00 0.00 0.00 2.74
5555 7202 3.643237 TGGATTGGAGGGAGTACTGTAG 58.357 50.000 0.00 0.00 0.00 2.74
5556 7203 3.012502 TGGATTGGAGGGAGTACTGTAGT 59.987 47.826 0.00 0.00 0.00 2.73
5558 7205 4.470304 GGATTGGAGGGAGTACTGTAGTTT 59.530 45.833 0.00 0.00 0.00 2.66
5559 7206 4.884668 TTGGAGGGAGTACTGTAGTTTG 57.115 45.455 0.00 0.00 0.00 2.93
5591 7238 1.845809 CTGCTTGTTGTCACGCTCCC 61.846 60.000 0.00 0.00 39.18 4.30
5592 7239 2.954753 GCTTGTTGTCACGCTCCCG 61.955 63.158 0.00 0.00 36.19 5.14
5622 7271 5.560966 TTTTTCCTCTGAACTCACAACAC 57.439 39.130 0.00 0.00 0.00 3.32
5623 7272 2.910688 TCCTCTGAACTCACAACACC 57.089 50.000 0.00 0.00 0.00 4.16
5625 7274 2.503765 TCCTCTGAACTCACAACACCAA 59.496 45.455 0.00 0.00 0.00 3.67
5626 7275 3.136443 TCCTCTGAACTCACAACACCAAT 59.864 43.478 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.530857 GGAGATCCCGGTGTGCGG 62.531 72.222 0.00 0.00 0.00 5.69
57 58 4.101448 ATGGGTGTGCGCTCTCCC 62.101 66.667 32.45 32.45 40.40 4.30
58 59 2.512515 GATGGGTGTGCGCTCTCC 60.513 66.667 19.50 19.50 0.00 3.71
59 60 2.512515 GGATGGGTGTGCGCTCTC 60.513 66.667 9.73 5.89 0.00 3.20
60 61 4.457496 CGGATGGGTGTGCGCTCT 62.457 66.667 9.73 0.00 0.00 4.09
65 66 4.760047 AGACGCGGATGGGTGTGC 62.760 66.667 12.47 0.00 41.99 4.57
66 67 2.815211 CAGACGCGGATGGGTGTG 60.815 66.667 12.47 0.00 43.97 3.82
67 68 4.760047 GCAGACGCGGATGGGTGT 62.760 66.667 12.47 0.00 41.99 4.16
68 69 4.758251 TGCAGACGCGGATGGGTG 62.758 66.667 12.47 0.00 41.99 4.61
69 70 4.760047 GTGCAGACGCGGATGGGT 62.760 66.667 12.47 0.00 45.02 4.51
79 80 1.709147 GATGGTGGATGCGTGCAGAC 61.709 60.000 0.00 0.00 0.00 3.51
80 81 1.450134 GATGGTGGATGCGTGCAGA 60.450 57.895 0.00 0.00 0.00 4.26
81 82 2.816360 CGATGGTGGATGCGTGCAG 61.816 63.158 0.00 0.00 0.00 4.41
82 83 2.819154 CGATGGTGGATGCGTGCA 60.819 61.111 0.00 0.00 0.00 4.57
83 84 4.241999 GCGATGGTGGATGCGTGC 62.242 66.667 0.00 0.00 0.00 5.34
84 85 3.928769 CGCGATGGTGGATGCGTG 61.929 66.667 0.00 0.00 45.12 5.34
87 88 2.923426 TTCCTCGCGATGGTGGATGC 62.923 60.000 10.36 0.00 0.00 3.91
88 89 0.877649 CTTCCTCGCGATGGTGGATG 60.878 60.000 10.36 11.31 0.00 3.51
89 90 1.043116 TCTTCCTCGCGATGGTGGAT 61.043 55.000 10.36 0.00 0.00 3.41
90 91 1.043116 ATCTTCCTCGCGATGGTGGA 61.043 55.000 10.36 10.44 0.00 4.02
91 92 0.598680 GATCTTCCTCGCGATGGTGG 60.599 60.000 10.36 7.67 0.00 4.61
92 93 0.598680 GGATCTTCCTCGCGATGGTG 60.599 60.000 10.36 10.80 32.53 4.17
93 94 1.043116 TGGATCTTCCTCGCGATGGT 61.043 55.000 10.36 0.00 37.46 3.55
94 95 0.319728 ATGGATCTTCCTCGCGATGG 59.680 55.000 10.36 13.83 37.46 3.51
95 96 1.000171 TGATGGATCTTCCTCGCGATG 60.000 52.381 10.36 7.29 37.46 3.84
96 97 1.000283 GTGATGGATCTTCCTCGCGAT 60.000 52.381 10.36 0.00 37.46 4.58
97 98 0.385751 GTGATGGATCTTCCTCGCGA 59.614 55.000 9.26 9.26 37.46 5.87
98 99 0.598680 GGTGATGGATCTTCCTCGCG 60.599 60.000 0.00 0.00 37.46 5.87
99 100 0.465705 TGGTGATGGATCTTCCTCGC 59.534 55.000 0.00 0.00 37.46 5.03
100 101 1.069823 CCTGGTGATGGATCTTCCTCG 59.930 57.143 0.00 0.00 37.46 4.63
101 102 1.419387 CCCTGGTGATGGATCTTCCTC 59.581 57.143 0.00 0.00 37.46 3.71
102 103 1.010046 TCCCTGGTGATGGATCTTCCT 59.990 52.381 0.00 0.00 37.46 3.36
103 104 1.141858 GTCCCTGGTGATGGATCTTCC 59.858 57.143 0.00 0.00 36.96 3.46
104 105 1.839994 TGTCCCTGGTGATGGATCTTC 59.160 52.381 0.00 0.00 32.20 2.87
105 106 1.842562 CTGTCCCTGGTGATGGATCTT 59.157 52.381 0.00 0.00 32.20 2.40
106 107 1.504912 CTGTCCCTGGTGATGGATCT 58.495 55.000 0.00 0.00 32.20 2.75
107 108 0.179034 GCTGTCCCTGGTGATGGATC 60.179 60.000 0.00 0.00 32.20 3.36
108 109 1.639635 GGCTGTCCCTGGTGATGGAT 61.640 60.000 0.00 0.00 32.20 3.41
109 110 2.300967 GGCTGTCCCTGGTGATGGA 61.301 63.158 0.00 0.00 0.00 3.41
110 111 2.273449 GGCTGTCCCTGGTGATGG 59.727 66.667 0.00 0.00 0.00 3.51
111 112 2.124983 CGGCTGTCCCTGGTGATG 60.125 66.667 0.00 0.00 0.00 3.07
112 113 4.101448 GCGGCTGTCCCTGGTGAT 62.101 66.667 0.00 0.00 0.00 3.06
129 130 4.457496 ACTGCTGGATGGACGCGG 62.457 66.667 12.47 0.00 36.17 6.46
130 131 3.190849 CACTGCTGGATGGACGCG 61.191 66.667 3.53 3.53 0.00 6.01
131 132 2.821366 CCACTGCTGGATGGACGC 60.821 66.667 0.00 0.00 40.55 5.19
132 133 2.981302 TCCACTGCTGGATGGACG 59.019 61.111 0.00 0.00 42.15 4.79
139 140 2.202987 GCGGAGATCCACTGCTGG 60.203 66.667 12.28 0.00 39.23 4.85
140 141 2.202987 GGCGGAGATCCACTGCTG 60.203 66.667 17.03 0.00 39.31 4.41
141 142 2.364842 AGGCGGAGATCCACTGCT 60.365 61.111 17.03 5.02 39.31 4.24
142 143 2.107953 GAGGCGGAGATCCACTGC 59.892 66.667 11.42 11.42 38.72 4.40
143 144 2.121538 TCGAGGCGGAGATCCACTG 61.122 63.158 0.00 0.00 35.14 3.66
144 145 2.122167 GTCGAGGCGGAGATCCACT 61.122 63.158 0.00 0.00 35.14 4.00
145 146 2.413765 GTCGAGGCGGAGATCCAC 59.586 66.667 0.00 0.00 35.14 4.02
146 147 2.833582 GGTCGAGGCGGAGATCCA 60.834 66.667 0.00 0.00 35.14 3.41
147 148 3.967335 CGGTCGAGGCGGAGATCC 61.967 72.222 0.00 0.00 0.00 3.36
148 149 4.632458 GCGGTCGAGGCGGAGATC 62.632 72.222 0.00 0.00 0.00 2.75
175 176 4.569023 TCGGCATGCGCTAGGACG 62.569 66.667 12.44 12.42 38.60 4.79
176 177 2.962253 GTCGGCATGCGCTAGGAC 60.962 66.667 12.44 9.77 38.60 3.85
177 178 4.569023 CGTCGGCATGCGCTAGGA 62.569 66.667 12.44 0.73 38.60 2.94
178 179 4.873129 ACGTCGGCATGCGCTAGG 62.873 66.667 12.44 7.58 38.60 3.02
179 180 3.620428 CACGTCGGCATGCGCTAG 61.620 66.667 12.44 5.97 38.60 3.42
184 185 4.759096 GGTTGCACGTCGGCATGC 62.759 66.667 9.90 9.90 44.48 4.06
185 186 4.101790 GGGTTGCACGTCGGCATG 62.102 66.667 8.83 0.00 44.48 4.06
207 208 1.077930 CTGGATCTGGTGGGCACAG 60.078 63.158 0.00 0.00 37.30 3.66
208 209 2.605607 CCTGGATCTGGTGGGCACA 61.606 63.158 0.00 0.00 0.00 4.57
209 210 2.273449 CCTGGATCTGGTGGGCAC 59.727 66.667 0.00 0.00 0.00 5.01
210 211 3.731728 GCCTGGATCTGGTGGGCA 61.732 66.667 0.00 0.00 42.08 5.36
211 212 4.864334 CGCCTGGATCTGGTGGGC 62.864 72.222 0.00 7.56 39.43 5.36
212 213 4.864334 GCGCCTGGATCTGGTGGG 62.864 72.222 16.45 4.14 34.31 4.61
213 214 4.864334 GGCGCCTGGATCTGGTGG 62.864 72.222 22.15 5.57 34.31 4.61
229 230 4.821589 GGCTTCCTCTCGTGGCGG 62.822 72.222 0.00 0.00 0.00 6.13
230 231 4.821589 GGGCTTCCTCTCGTGGCG 62.822 72.222 0.00 0.00 0.00 5.69
231 232 4.475135 GGGGCTTCCTCTCGTGGC 62.475 72.222 0.00 0.00 0.00 5.01
232 233 4.148825 CGGGGCTTCCTCTCGTGG 62.149 72.222 0.00 0.00 0.00 4.94
233 234 4.821589 GCGGGGCTTCCTCTCGTG 62.822 72.222 0.00 0.00 0.00 4.35
312 313 1.487300 GTCACTCCTCTTACTCCCCC 58.513 60.000 0.00 0.00 0.00 5.40
313 314 1.104630 CGTCACTCCTCTTACTCCCC 58.895 60.000 0.00 0.00 0.00 4.81
314 315 1.104630 CCGTCACTCCTCTTACTCCC 58.895 60.000 0.00 0.00 0.00 4.30
315 316 0.456628 GCCGTCACTCCTCTTACTCC 59.543 60.000 0.00 0.00 0.00 3.85
316 317 0.099082 CGCCGTCACTCCTCTTACTC 59.901 60.000 0.00 0.00 0.00 2.59
317 318 1.935327 GCGCCGTCACTCCTCTTACT 61.935 60.000 0.00 0.00 0.00 2.24
318 319 1.516603 GCGCCGTCACTCCTCTTAC 60.517 63.158 0.00 0.00 0.00 2.34
319 320 0.393402 TAGCGCCGTCACTCCTCTTA 60.393 55.000 2.29 0.00 0.00 2.10
320 321 1.658686 CTAGCGCCGTCACTCCTCTT 61.659 60.000 2.29 0.00 0.00 2.85
321 322 2.045242 TAGCGCCGTCACTCCTCT 60.045 61.111 2.29 0.00 0.00 3.69
322 323 2.409651 CTAGCGCCGTCACTCCTC 59.590 66.667 2.29 0.00 0.00 3.71
323 324 3.141488 CCTAGCGCCGTCACTCCT 61.141 66.667 2.29 0.00 0.00 3.69
324 325 4.208686 CCCTAGCGCCGTCACTCC 62.209 72.222 2.29 0.00 0.00 3.85
325 326 1.660560 TAACCCTAGCGCCGTCACTC 61.661 60.000 2.29 0.00 0.00 3.51
326 327 1.664321 CTAACCCTAGCGCCGTCACT 61.664 60.000 2.29 0.00 0.00 3.41
327 328 1.226888 CTAACCCTAGCGCCGTCAC 60.227 63.158 2.29 0.00 0.00 3.67
328 329 2.420568 CCTAACCCTAGCGCCGTCA 61.421 63.158 2.29 0.00 0.00 4.35
329 330 2.416260 CCTAACCCTAGCGCCGTC 59.584 66.667 2.29 0.00 0.00 4.79
330 331 2.916527 TAGCCTAACCCTAGCGCCGT 62.917 60.000 2.29 0.00 0.00 5.68
331 332 2.143594 CTAGCCTAACCCTAGCGCCG 62.144 65.000 2.29 0.00 0.00 6.46
332 333 1.666580 CTAGCCTAACCCTAGCGCC 59.333 63.158 2.29 0.00 0.00 6.53
333 334 1.666580 CCTAGCCTAACCCTAGCGC 59.333 63.158 0.00 0.00 32.74 5.92
334 335 0.178970 TCCCTAGCCTAACCCTAGCG 60.179 60.000 0.00 0.00 32.74 4.26
335 336 1.340088 GTCCCTAGCCTAACCCTAGC 58.660 60.000 0.00 0.00 32.74 3.42
336 337 1.618487 CGTCCCTAGCCTAACCCTAG 58.382 60.000 0.00 0.00 33.64 3.02
337 338 0.468771 GCGTCCCTAGCCTAACCCTA 60.469 60.000 0.00 0.00 0.00 3.53
338 339 1.761271 GCGTCCCTAGCCTAACCCT 60.761 63.158 0.00 0.00 0.00 4.34
339 340 2.820261 GCGTCCCTAGCCTAACCC 59.180 66.667 0.00 0.00 0.00 4.11
347 348 4.530857 CGGCTTGGGCGTCCCTAG 62.531 72.222 17.45 17.45 46.65 3.02
381 382 3.423154 CAAACTGCTCCGTCCCGC 61.423 66.667 0.00 0.00 0.00 6.13
382 383 2.027625 GACAAACTGCTCCGTCCCG 61.028 63.158 0.00 0.00 0.00 5.14
383 384 1.070786 TGACAAACTGCTCCGTCCC 59.929 57.895 0.00 0.00 0.00 4.46
384 385 0.531974 TGTGACAAACTGCTCCGTCC 60.532 55.000 0.00 0.00 0.00 4.79
385 386 1.512926 ATGTGACAAACTGCTCCGTC 58.487 50.000 0.00 0.00 0.00 4.79
386 387 2.831685 TATGTGACAAACTGCTCCGT 57.168 45.000 0.00 0.00 0.00 4.69
387 388 3.325870 TCTTATGTGACAAACTGCTCCG 58.674 45.455 0.00 0.00 0.00 4.63
388 389 4.083271 GGTTCTTATGTGACAAACTGCTCC 60.083 45.833 0.00 0.00 0.00 4.70
389 390 4.377431 CGGTTCTTATGTGACAAACTGCTC 60.377 45.833 0.00 0.00 0.00 4.26
390 391 3.498397 CGGTTCTTATGTGACAAACTGCT 59.502 43.478 0.00 0.00 0.00 4.24
391 392 3.364964 CCGGTTCTTATGTGACAAACTGC 60.365 47.826 0.00 0.00 0.00 4.40
392 393 3.813166 ACCGGTTCTTATGTGACAAACTG 59.187 43.478 0.00 0.00 0.00 3.16
393 394 4.081322 ACCGGTTCTTATGTGACAAACT 57.919 40.909 0.00 0.00 0.00 2.66
394 395 4.823790 AACCGGTTCTTATGTGACAAAC 57.176 40.909 15.86 0.00 0.00 2.93
395 396 5.613329 AGTAACCGGTTCTTATGTGACAAA 58.387 37.500 26.16 0.00 0.00 2.83
396 397 5.217978 AGTAACCGGTTCTTATGTGACAA 57.782 39.130 26.16 0.00 0.00 3.18
397 398 4.877378 AGTAACCGGTTCTTATGTGACA 57.123 40.909 26.16 0.00 0.00 3.58
398 399 6.815142 ACAATAGTAACCGGTTCTTATGTGAC 59.185 38.462 26.16 13.88 0.00 3.67
399 400 6.938507 ACAATAGTAACCGGTTCTTATGTGA 58.061 36.000 26.16 0.00 0.00 3.58
400 401 7.332430 TCAACAATAGTAACCGGTTCTTATGTG 59.668 37.037 26.16 20.71 0.00 3.21
401 402 7.388437 TCAACAATAGTAACCGGTTCTTATGT 58.612 34.615 26.16 21.49 0.00 2.29
402 403 7.837202 TCAACAATAGTAACCGGTTCTTATG 57.163 36.000 26.16 20.95 0.00 1.90
403 404 8.889717 CATTCAACAATAGTAACCGGTTCTTAT 58.110 33.333 26.16 18.92 0.00 1.73
404 405 8.095792 TCATTCAACAATAGTAACCGGTTCTTA 58.904 33.333 26.16 17.46 0.00 2.10
405 406 6.938030 TCATTCAACAATAGTAACCGGTTCTT 59.062 34.615 26.16 15.72 0.00 2.52
406 407 6.469410 TCATTCAACAATAGTAACCGGTTCT 58.531 36.000 26.16 21.57 0.00 3.01
407 408 6.730960 TCATTCAACAATAGTAACCGGTTC 57.269 37.500 26.16 15.49 0.00 3.62
408 409 7.696992 AATCATTCAACAATAGTAACCGGTT 57.303 32.000 25.64 25.64 0.00 4.44
409 410 7.696992 AAATCATTCAACAATAGTAACCGGT 57.303 32.000 0.00 0.00 0.00 5.28
410 411 8.889717 AGTAAATCATTCAACAATAGTAACCGG 58.110 33.333 0.00 0.00 0.00 5.28
411 412 9.916397 GAGTAAATCATTCAACAATAGTAACCG 57.084 33.333 0.00 0.00 0.00 4.44
433 434 8.823818 GCCAATTAGCGATTTAAAAGTAGAGTA 58.176 33.333 0.00 0.00 0.00 2.59
434 435 7.553044 AGCCAATTAGCGATTTAAAAGTAGAGT 59.447 33.333 0.00 0.00 38.01 3.24
435 436 7.920738 AGCCAATTAGCGATTTAAAAGTAGAG 58.079 34.615 0.00 0.00 38.01 2.43
436 437 7.859325 AGCCAATTAGCGATTTAAAAGTAGA 57.141 32.000 0.00 0.00 38.01 2.59
439 440 9.338622 AGTATAGCCAATTAGCGATTTAAAAGT 57.661 29.630 0.00 0.00 38.01 2.66
446 447 9.946165 GTTTAAAAGTATAGCCAATTAGCGATT 57.054 29.630 0.00 0.00 38.01 3.34
447 448 8.565416 GGTTTAAAAGTATAGCCAATTAGCGAT 58.435 33.333 0.00 0.00 38.01 4.58
448 449 7.771826 AGGTTTAAAAGTATAGCCAATTAGCGA 59.228 33.333 0.00 0.00 38.01 4.93
449 450 7.855904 CAGGTTTAAAAGTATAGCCAATTAGCG 59.144 37.037 0.00 0.00 38.01 4.26
450 451 8.135529 CCAGGTTTAAAAGTATAGCCAATTAGC 58.864 37.037 0.00 0.00 0.00 3.09
451 452 8.135529 GCCAGGTTTAAAAGTATAGCCAATTAG 58.864 37.037 0.00 0.00 0.00 1.73
452 453 7.837187 AGCCAGGTTTAAAAGTATAGCCAATTA 59.163 33.333 0.00 0.00 0.00 1.40
453 454 6.667848 AGCCAGGTTTAAAAGTATAGCCAATT 59.332 34.615 0.00 0.00 0.00 2.32
454 455 6.194967 AGCCAGGTTTAAAAGTATAGCCAAT 58.805 36.000 0.00 0.00 0.00 3.16
455 456 5.576128 AGCCAGGTTTAAAAGTATAGCCAA 58.424 37.500 0.00 0.00 0.00 4.52
456 457 5.187621 AGCCAGGTTTAAAAGTATAGCCA 57.812 39.130 0.00 0.00 0.00 4.75
457 458 5.238868 GCTAGCCAGGTTTAAAAGTATAGCC 59.761 44.000 2.29 0.00 0.00 3.93
458 459 5.820947 TGCTAGCCAGGTTTAAAAGTATAGC 59.179 40.000 13.29 1.12 34.07 2.97
459 460 7.859325 TTGCTAGCCAGGTTTAAAAGTATAG 57.141 36.000 13.29 0.00 0.00 1.31
460 461 8.638629 TTTTGCTAGCCAGGTTTAAAAGTATA 57.361 30.769 13.29 0.00 0.00 1.47
461 462 7.533289 TTTTGCTAGCCAGGTTTAAAAGTAT 57.467 32.000 13.29 0.00 0.00 2.12
462 463 6.963083 TTTTGCTAGCCAGGTTTAAAAGTA 57.037 33.333 13.29 0.00 0.00 2.24
463 464 5.862678 TTTTGCTAGCCAGGTTTAAAAGT 57.137 34.783 13.29 0.00 0.00 2.66
464 465 7.542130 CACTATTTTGCTAGCCAGGTTTAAAAG 59.458 37.037 13.29 2.44 0.00 2.27
465 466 7.231722 TCACTATTTTGCTAGCCAGGTTTAAAA 59.768 33.333 13.29 10.51 0.00 1.52
466 467 6.717540 TCACTATTTTGCTAGCCAGGTTTAAA 59.282 34.615 13.29 0.83 0.00 1.52
467 468 6.242396 TCACTATTTTGCTAGCCAGGTTTAA 58.758 36.000 13.29 0.00 0.00 1.52
468 469 5.811190 TCACTATTTTGCTAGCCAGGTTTA 58.189 37.500 13.29 0.00 0.00 2.01
469 470 4.662278 TCACTATTTTGCTAGCCAGGTTT 58.338 39.130 13.29 0.00 0.00 3.27
470 471 4.301072 TCACTATTTTGCTAGCCAGGTT 57.699 40.909 13.29 0.00 0.00 3.50
471 472 4.455606 GATCACTATTTTGCTAGCCAGGT 58.544 43.478 13.29 0.00 0.00 4.00
472 473 3.496130 CGATCACTATTTTGCTAGCCAGG 59.504 47.826 13.29 0.00 0.00 4.45
473 474 4.122776 ACGATCACTATTTTGCTAGCCAG 58.877 43.478 13.29 4.19 0.00 4.85
474 475 4.119862 GACGATCACTATTTTGCTAGCCA 58.880 43.478 13.29 0.00 0.00 4.75
475 476 4.372656 AGACGATCACTATTTTGCTAGCC 58.627 43.478 13.29 0.00 0.00 3.93
476 477 6.144724 CCTTAGACGATCACTATTTTGCTAGC 59.855 42.308 8.10 8.10 0.00 3.42
477 478 7.203910 ACCTTAGACGATCACTATTTTGCTAG 58.796 38.462 0.00 0.00 0.00 3.42
478 479 7.108841 ACCTTAGACGATCACTATTTTGCTA 57.891 36.000 0.00 0.00 0.00 3.49
479 480 5.978814 ACCTTAGACGATCACTATTTTGCT 58.021 37.500 0.00 0.00 0.00 3.91
480 481 6.663944 AACCTTAGACGATCACTATTTTGC 57.336 37.500 0.00 0.00 0.00 3.68
485 486 9.570468 TCAAGTATAACCTTAGACGATCACTAT 57.430 33.333 0.00 0.00 30.58 2.12
486 487 8.969260 TCAAGTATAACCTTAGACGATCACTA 57.031 34.615 0.00 0.00 30.58 2.74
487 488 7.556996 ACTCAAGTATAACCTTAGACGATCACT 59.443 37.037 0.00 0.00 30.58 3.41
488 489 7.705214 ACTCAAGTATAACCTTAGACGATCAC 58.295 38.462 0.00 0.00 30.58 3.06
489 490 7.876936 ACTCAAGTATAACCTTAGACGATCA 57.123 36.000 0.00 0.00 30.58 2.92
490 491 9.662545 GTTACTCAAGTATAACCTTAGACGATC 57.337 37.037 0.00 0.00 30.58 3.69
491 492 9.406113 AGTTACTCAAGTATAACCTTAGACGAT 57.594 33.333 0.00 0.00 32.67 3.73
492 493 8.798859 AGTTACTCAAGTATAACCTTAGACGA 57.201 34.615 0.00 0.00 32.67 4.20
494 495 9.949174 GCTAGTTACTCAAGTATAACCTTAGAC 57.051 37.037 0.00 0.00 32.67 2.59
495 496 9.917887 AGCTAGTTACTCAAGTATAACCTTAGA 57.082 33.333 0.00 0.00 32.67 2.10
497 498 9.917887 AGAGCTAGTTACTCAAGTATAACCTTA 57.082 33.333 0.00 0.00 36.58 2.69
498 499 8.826293 AGAGCTAGTTACTCAAGTATAACCTT 57.174 34.615 0.00 0.00 36.58 3.50
499 500 7.503230 GGAGAGCTAGTTACTCAAGTATAACCT 59.497 40.741 12.35 0.00 36.58 3.50
500 501 7.255555 GGGAGAGCTAGTTACTCAAGTATAACC 60.256 44.444 12.35 0.00 36.58 2.85
501 502 7.520292 CGGGAGAGCTAGTTACTCAAGTATAAC 60.520 44.444 12.35 0.00 36.58 1.89
502 503 6.485984 CGGGAGAGCTAGTTACTCAAGTATAA 59.514 42.308 12.35 0.00 36.58 0.98
503 504 5.996513 CGGGAGAGCTAGTTACTCAAGTATA 59.003 44.000 12.35 0.00 36.58 1.47
504 505 4.822896 CGGGAGAGCTAGTTACTCAAGTAT 59.177 45.833 12.35 0.00 36.58 2.12
505 506 4.080695 TCGGGAGAGCTAGTTACTCAAGTA 60.081 45.833 12.35 0.00 36.58 2.24
506 507 3.018149 CGGGAGAGCTAGTTACTCAAGT 58.982 50.000 12.35 0.00 36.58 3.16
507 508 3.280295 TCGGGAGAGCTAGTTACTCAAG 58.720 50.000 12.35 7.44 36.58 3.02
508 509 3.361281 TCGGGAGAGCTAGTTACTCAA 57.639 47.619 12.35 0.00 36.58 3.02
509 510 3.579534 ATCGGGAGAGCTAGTTACTCA 57.420 47.619 12.35 0.00 45.48 3.41
510 511 6.388435 TTTTATCGGGAGAGCTAGTTACTC 57.612 41.667 0.00 0.00 45.48 2.59
511 512 6.786967 TTTTTATCGGGAGAGCTAGTTACT 57.213 37.500 0.00 0.00 45.48 2.24
546 547 7.382759 CGTCTCTAGCTAGTTTCTCAAGTTTTT 59.617 37.037 20.10 0.00 0.00 1.94
547 548 6.864165 CGTCTCTAGCTAGTTTCTCAAGTTTT 59.136 38.462 20.10 0.00 0.00 2.43
548 549 6.207025 TCGTCTCTAGCTAGTTTCTCAAGTTT 59.793 38.462 20.10 0.00 0.00 2.66
549 550 5.706369 TCGTCTCTAGCTAGTTTCTCAAGTT 59.294 40.000 20.10 0.00 0.00 2.66
550 551 5.247084 TCGTCTCTAGCTAGTTTCTCAAGT 58.753 41.667 20.10 0.00 0.00 3.16
551 552 5.583061 TCTCGTCTCTAGCTAGTTTCTCAAG 59.417 44.000 20.10 8.63 0.00 3.02
552 553 5.489249 TCTCGTCTCTAGCTAGTTTCTCAA 58.511 41.667 20.10 0.00 0.00 3.02
553 554 5.087391 TCTCGTCTCTAGCTAGTTTCTCA 57.913 43.478 20.10 0.00 0.00 3.27
554 555 5.560183 GCATCTCGTCTCTAGCTAGTTTCTC 60.560 48.000 20.10 7.23 0.00 2.87
555 556 4.274950 GCATCTCGTCTCTAGCTAGTTTCT 59.725 45.833 20.10 0.00 0.00 2.52
556 557 4.035792 TGCATCTCGTCTCTAGCTAGTTTC 59.964 45.833 20.10 10.34 0.00 2.78
557 558 3.948473 TGCATCTCGTCTCTAGCTAGTTT 59.052 43.478 20.10 0.00 0.00 2.66
558 559 3.546724 TGCATCTCGTCTCTAGCTAGTT 58.453 45.455 20.10 0.00 0.00 2.24
559 560 3.201353 TGCATCTCGTCTCTAGCTAGT 57.799 47.619 20.10 0.00 0.00 2.57
560 561 4.002982 AGATGCATCTCGTCTCTAGCTAG 58.997 47.826 23.75 15.01 36.31 3.42
561 562 4.014569 AGATGCATCTCGTCTCTAGCTA 57.985 45.455 23.75 0.00 36.31 3.32
562 563 2.862541 AGATGCATCTCGTCTCTAGCT 58.137 47.619 23.75 0.00 36.31 3.32
572 573 9.973450 TTACTCAAGTAAATAGAGATGCATCTC 57.027 33.333 38.52 38.52 43.40 2.75
577 578 9.709600 GCTTTTTACTCAAGTAAATAGAGATGC 57.290 33.333 24.80 15.71 46.19 3.91
601 602 6.807230 CGTTGACAATAAGACAACTACTAGCT 59.193 38.462 0.00 0.00 46.18 3.32
602 603 6.805271 TCGTTGACAATAAGACAACTACTAGC 59.195 38.462 0.00 0.00 46.18 3.42
635 636 9.563748 ACACCACAACTATTAGCTTTTACTTTA 57.436 29.630 0.00 0.00 0.00 1.85
639 640 7.668525 AGACACCACAACTATTAGCTTTTAC 57.331 36.000 0.00 0.00 0.00 2.01
658 659 3.495001 GCAGTACCTCTGAAACAAGACAC 59.505 47.826 0.00 0.00 46.27 3.67
686 687 5.754782 TGGTATCCATTTGCAATCACTACT 58.245 37.500 0.00 0.00 0.00 2.57
690 691 6.817641 TGATTTTGGTATCCATTTGCAATCAC 59.182 34.615 0.00 0.00 31.53 3.06
717 718 5.884322 TCTAGGTCAACCTTGTGTCTAGTA 58.116 41.667 7.07 0.00 46.09 1.82
722 723 2.037251 TGCTCTAGGTCAACCTTGTGTC 59.963 50.000 7.07 4.21 46.09 3.67
743 744 2.672996 GTTGGCTCCGCACCATGT 60.673 61.111 0.00 0.00 36.96 3.21
752 753 1.819632 CGGCAGGTATGTTGGCTCC 60.820 63.158 0.00 0.00 38.82 4.70
797 811 7.541091 CCAATTTGTTGATCATCAGAGAAACTG 59.459 37.037 6.57 0.00 46.97 3.16
827 841 2.286127 AAACAACCGCAAACCCACCG 62.286 55.000 0.00 0.00 0.00 4.94
835 849 4.564041 TCGTACCTTATAAACAACCGCAA 58.436 39.130 0.00 0.00 0.00 4.85
840 854 9.591792 AGGAGTAATTCGTACCTTATAAACAAC 57.408 33.333 0.00 0.00 32.58 3.32
857 871 7.756614 AGGAAGTTTAGGAAACAGGAGTAATT 58.243 34.615 4.99 0.00 43.79 1.40
866 880 6.200878 AGGAATGAGGAAGTTTAGGAAACA 57.799 37.500 4.99 0.00 43.79 2.83
868 882 7.769044 CGATAAGGAATGAGGAAGTTTAGGAAA 59.231 37.037 0.00 0.00 0.00 3.13
871 885 6.583562 ACGATAAGGAATGAGGAAGTTTAGG 58.416 40.000 0.00 0.00 0.00 2.69
872 886 8.414778 ACTACGATAAGGAATGAGGAAGTTTAG 58.585 37.037 0.00 0.00 0.00 1.85
876 890 6.380274 TCAACTACGATAAGGAATGAGGAAGT 59.620 38.462 0.00 0.00 0.00 3.01
880 894 6.516718 ACATCAACTACGATAAGGAATGAGG 58.483 40.000 0.00 0.00 0.00 3.86
906 920 9.374838 TGTGATGTGCATATGTCATATATCTTC 57.625 33.333 0.00 7.25 0.00 2.87
913 927 6.766944 TGTGATTGTGATGTGCATATGTCATA 59.233 34.615 0.00 2.12 0.00 2.15
921 935 2.229543 GTGGTGTGATTGTGATGTGCAT 59.770 45.455 0.00 0.00 0.00 3.96
935 949 2.124362 TGTGCCTGTGGTGGTGTG 60.124 61.111 0.00 0.00 0.00 3.82
946 962 3.987220 GTGAATTAATTTTGCGTGTGCCT 59.013 39.130 1.43 0.00 41.78 4.75
947 963 3.181545 CGTGAATTAATTTTGCGTGTGCC 60.182 43.478 1.43 0.00 41.78 5.01
954 970 4.447389 AGCCACAACGTGAATTAATTTTGC 59.553 37.500 1.43 0.00 35.23 3.68
959 975 2.556189 TGCAGCCACAACGTGAATTAAT 59.444 40.909 0.00 0.00 35.23 1.40
960 976 1.950216 TGCAGCCACAACGTGAATTAA 59.050 42.857 0.00 0.00 35.23 1.40
969 985 1.799258 CTGTTCCCTGCAGCCACAAC 61.799 60.000 8.66 8.13 0.00 3.32
975 991 2.674380 CCCACTGTTCCCTGCAGC 60.674 66.667 8.66 0.00 37.47 5.25
987 1003 0.328258 CGACCATTCCCTTTCCCACT 59.672 55.000 0.00 0.00 0.00 4.00
996 1012 0.036388 TCTTCACAGCGACCATTCCC 60.036 55.000 0.00 0.00 0.00 3.97
1030 1046 9.622004 GTGGAATTTATTCTCATGCATATCAAG 57.378 33.333 0.00 0.00 37.00 3.02
1035 1051 8.212995 TCTCTGTGGAATTTATTCTCATGCATA 58.787 33.333 0.00 0.00 37.00 3.14
1058 1074 3.895232 TCATTAGGCACTCAACCTCTC 57.105 47.619 0.00 0.00 41.75 3.20
1116 1132 0.249868 TCCCTTGCGTGTCAGAACAG 60.250 55.000 0.00 0.00 35.64 3.16
1170 1186 1.084289 GCACCCAGTTTCGTACATCC 58.916 55.000 0.00 0.00 0.00 3.51
1347 1365 0.504384 CAATAGGTTGCGCTCGATCG 59.496 55.000 9.36 9.36 0.00 3.69
1359 1377 1.001393 CCCCCAACACGCAATAGGT 60.001 57.895 0.00 0.00 0.00 3.08
1520 1538 0.248012 TATACCGCCGCCACCATATG 59.752 55.000 0.00 0.00 0.00 1.78
1647 1665 1.202568 CCAGCGATCATAGGCAGTGAA 60.203 52.381 0.00 0.00 0.00 3.18
1764 1789 8.408601 CAATGAAAATAGAATCGAATGGAAGGT 58.591 33.333 0.00 0.00 0.00 3.50
1801 1966 1.081708 GCGACCGGTTTTGCGAAAT 60.082 52.632 16.71 0.00 0.00 2.17
1957 2122 7.147391 TGGATAATATGCCTACACTTTTCTGGA 60.147 37.037 0.00 0.00 0.00 3.86
2034 2199 8.353423 AGTTTTGATCACCATTATTAGTTGCT 57.647 30.769 0.00 0.00 0.00 3.91
2078 2243 7.009723 GCACTTTGACCGAAAAATTTGTTAAGA 59.990 33.333 0.00 0.00 0.00 2.10
2087 2252 6.575162 AGATTAGCACTTTGACCGAAAAAT 57.425 33.333 0.00 0.00 0.00 1.82
2093 2258 5.109210 TCACATAGATTAGCACTTTGACCG 58.891 41.667 0.00 0.00 0.00 4.79
2269 2434 8.091449 CCAAACTAGTGTCAAAGAAGAGTAGAT 58.909 37.037 0.00 0.00 0.00 1.98
2290 2455 9.474920 TCAATATGTTTTCAAAGATGTCCAAAC 57.525 29.630 0.00 0.00 0.00 2.93
2365 2530 1.240256 GGGTTCCACATTTGCGTACA 58.760 50.000 0.00 0.00 0.00 2.90
2520 2685 3.028130 TCGGTACCATGTGATCAGCTAA 58.972 45.455 13.54 0.00 0.00 3.09
2540 2705 6.449698 TGAGAGTCCAAAATCAGCAATTTTC 58.550 36.000 6.80 0.00 44.04 2.29
2902 3086 7.338710 TGCAATTACTCTAAGGCTCAGTTAAT 58.661 34.615 0.00 0.00 0.00 1.40
2963 3147 6.515832 CACAGTGCTACATAAGTGGATGATA 58.484 40.000 0.00 0.00 0.00 2.15
2975 3159 1.947678 GCTGAAGGCACAGTGCTACAT 60.948 52.381 24.75 8.85 44.28 2.29
3006 3190 6.260870 TCGCAAAGGCTTAATTAAACATGA 57.739 33.333 0.00 0.00 38.10 3.07
3050 3234 0.478507 ACTACCCTTTTGCAGGCTGT 59.521 50.000 17.16 0.00 42.29 4.40
3130 3315 6.358030 CGAAAACTCAACTACAGATGCAAAAG 59.642 38.462 0.00 0.00 0.00 2.27
3176 3361 7.083875 TGCAGCTAGGAATTAAAATGTACAC 57.916 36.000 0.00 0.00 0.00 2.90
3178 3363 7.762382 AGTTGCAGCTAGGAATTAAAATGTAC 58.238 34.615 0.00 0.00 0.00 2.90
3189 3458 4.072131 CCTACAAAAGTTGCAGCTAGGAA 58.928 43.478 10.01 0.00 31.00 3.36
3203 3472 6.716934 TCCAATTTGCAACTACCTACAAAA 57.283 33.333 0.00 0.00 35.79 2.44
3464 3733 6.927294 CCTTTCCAAGGTACTGATATGAAC 57.073 41.667 0.00 0.00 43.95 3.18
3657 3965 7.592938 TCAACTTATAGAGCAAACCATTGTTG 58.407 34.615 0.00 0.00 38.85 3.33
3667 3975 8.296713 GTCCAAATTGTTCAACTTATAGAGCAA 58.703 33.333 0.00 0.00 38.89 3.91
3996 4466 0.030908 GGACTAGCATCGGGACTTCG 59.969 60.000 0.00 0.00 0.00 3.79
4058 4528 1.915141 AAGAGGCACCTTGATGTTGG 58.085 50.000 0.00 0.00 0.00 3.77
4111 4581 3.649981 ACATAAGATAGAGCACCTGCCAT 59.350 43.478 0.00 0.00 43.38 4.40
4112 4582 3.041211 ACATAAGATAGAGCACCTGCCA 58.959 45.455 0.00 0.00 43.38 4.92
4253 4723 4.285775 TGGATATTCCGCTATGTTCATGGA 59.714 41.667 0.00 0.00 40.17 3.41
4482 5105 5.585390 AGCTTCAAATTTTCTGTCACTGTG 58.415 37.500 0.17 0.17 0.00 3.66
4483 5106 5.841957 AGCTTCAAATTTTCTGTCACTGT 57.158 34.783 0.00 0.00 0.00 3.55
4674 5489 3.371102 TGTGCCTATCAGACGCTTATC 57.629 47.619 0.00 0.00 0.00 1.75
4681 5496 7.843490 TTGTAAATAGTTGTGCCTATCAGAC 57.157 36.000 0.00 0.00 0.00 3.51
4700 5515 7.041440 ACACTTCGATCATCACACATTTTGTAA 60.041 33.333 0.00 0.00 35.67 2.41
4703 5518 5.566395 CACACTTCGATCATCACACATTTTG 59.434 40.000 0.00 0.00 0.00 2.44
4704 5519 5.335113 CCACACTTCGATCATCACACATTTT 60.335 40.000 0.00 0.00 0.00 1.82
4806 5621 2.365582 AGCATAACCAACAATCGGACC 58.634 47.619 0.00 0.00 0.00 4.46
4864 5763 9.408069 CTAACATCATAAGGACGGTAAGAATAC 57.592 37.037 0.00 0.00 0.00 1.89
4870 5769 5.422970 ACCACTAACATCATAAGGACGGTAA 59.577 40.000 0.00 0.00 0.00 2.85
4893 5792 9.233232 CAACAGTAAACAGTCCAAGAATTTAAC 57.767 33.333 0.00 0.00 0.00 2.01
4927 5847 2.422127 CAGCGTTAACCAAACCCTATGG 59.578 50.000 0.00 0.00 43.84 2.74
5053 5975 1.068588 ACAGACTGTATGCGTGTGTGT 59.931 47.619 6.24 5.96 37.47 3.72
5074 5996 1.312815 CTGCAGGGTTATTAGCAGCC 58.687 55.000 5.57 0.00 46.51 4.85
5133 6075 0.105224 AAACACCACCGTCATCGTCA 59.895 50.000 0.00 0.00 35.01 4.35
5329 6329 8.975295 TATCAGCTGATATACTACTCCGTAGTA 58.025 37.037 28.69 14.20 43.01 1.82
5330 6330 6.713276 ATCAGCTGATATACTACTCCGTAGT 58.287 40.000 27.73 11.02 41.31 2.73
5376 6377 2.355132 CTGTTGCAGCTGAGATGAATCC 59.645 50.000 20.43 0.00 0.00 3.01
5472 6473 0.830023 GTTGGGTTAGGCTGGCCAAA 60.830 55.000 7.01 0.00 38.92 3.28
5530 6531 4.105697 ACAGTACTCCCTCCAATCCAAAAA 59.894 41.667 0.00 0.00 0.00 1.94
5531 6532 3.655777 ACAGTACTCCCTCCAATCCAAAA 59.344 43.478 0.00 0.00 0.00 2.44
5532 6533 3.256704 ACAGTACTCCCTCCAATCCAAA 58.743 45.455 0.00 0.00 0.00 3.28
5533 6534 2.915869 ACAGTACTCCCTCCAATCCAA 58.084 47.619 0.00 0.00 0.00 3.53
5534 6535 2.642171 ACAGTACTCCCTCCAATCCA 57.358 50.000 0.00 0.00 0.00 3.41
5535 6536 3.644335 ACTACAGTACTCCCTCCAATCC 58.356 50.000 0.00 0.00 0.00 3.01
5536 6537 5.420409 CAAACTACAGTACTCCCTCCAATC 58.580 45.833 0.00 0.00 0.00 2.67
5537 6538 4.323562 GCAAACTACAGTACTCCCTCCAAT 60.324 45.833 0.00 0.00 0.00 3.16
5538 6539 3.007614 GCAAACTACAGTACTCCCTCCAA 59.992 47.826 0.00 0.00 0.00 3.53
5550 7197 3.667960 GCAACGAGGAATGCAAACTACAG 60.668 47.826 0.00 0.00 42.12 2.74
5551 7198 2.225491 GCAACGAGGAATGCAAACTACA 59.775 45.455 0.00 0.00 42.12 2.74
5552 7199 2.484264 AGCAACGAGGAATGCAAACTAC 59.516 45.455 0.00 0.00 44.95 2.73
5555 7202 1.689959 CAGCAACGAGGAATGCAAAC 58.310 50.000 0.00 0.00 44.95 2.93
5556 7203 0.039256 GCAGCAACGAGGAATGCAAA 60.039 50.000 0.00 0.00 44.95 3.68
5558 7205 0.890542 AAGCAGCAACGAGGAATGCA 60.891 50.000 0.00 0.00 44.95 3.96
5559 7206 0.455633 CAAGCAGCAACGAGGAATGC 60.456 55.000 0.00 0.00 42.87 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.