Multiple sequence alignment - TraesCS6A01G036200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G036200 chr6A 100.000 6197 0 0 1691 7887 17831269 17825073 0.000000e+00 11444.0
1 TraesCS6A01G036200 chr6A 100.000 1273 0 0 1 1273 17832959 17831687 0.000000e+00 2351.0
2 TraesCS6A01G036200 chr6A 89.429 473 46 4 2484 2954 17924803 17924333 1.890000e-165 593.0
3 TraesCS6A01G036200 chr6A 74.923 1304 252 38 3911 5189 17934140 17932887 1.950000e-145 527.0
4 TraesCS6A01G036200 chr6A 88.305 419 33 12 867 1273 17926136 17925722 9.200000e-134 488.0
5 TraesCS6A01G036200 chr6A 88.140 371 41 2 2094 2464 17925226 17924859 9.400000e-119 438.0
6 TraesCS6A01G036200 chr6A 93.594 281 15 2 5180 5459 17924336 17924058 4.400000e-112 416.0
7 TraesCS6A01G036200 chr6A 80.913 482 74 13 2899 3364 17900255 17899776 1.620000e-96 364.0
8 TraesCS6A01G036200 chr6A 80.667 450 69 14 2892 3329 17935838 17935395 4.560000e-87 333.0
9 TraesCS6A01G036200 chr6A 75.959 391 82 9 4995 5376 17911211 17910824 2.900000e-44 191.0
10 TraesCS6A01G036200 chr6A 91.367 139 11 1 154 291 17932431 17932293 1.040000e-43 189.0
11 TraesCS6A01G036200 chr6D 96.845 4564 116 8 2030 6570 17234130 17229572 0.000000e+00 7605.0
12 TraesCS6A01G036200 chr6D 94.038 1325 37 6 6567 7887 436434681 436433395 0.000000e+00 1971.0
13 TraesCS6A01G036200 chr6D 78.620 1478 274 37 3913 5369 17299380 17297924 0.000000e+00 941.0
14 TraesCS6A01G036200 chr6D 98.372 430 5 2 6567 6995 100360942 100360514 0.000000e+00 754.0
15 TraesCS6A01G036200 chr6D 97.674 430 8 2 6567 6995 291850520 291850092 0.000000e+00 737.0
16 TraesCS6A01G036200 chr6D 96.396 333 8 3 773 1105 17235132 17234804 5.380000e-151 545.0
17 TraesCS6A01G036200 chr6D 90.799 413 22 8 52 451 17235561 17235152 9.010000e-149 538.0
18 TraesCS6A01G036200 chr6D 75.615 976 190 32 4325 5278 17187185 17186236 2.610000e-119 440.0
19 TraesCS6A01G036200 chr6D 80.761 473 83 5 3874 4344 17285362 17284896 5.820000e-96 363.0
20 TraesCS6A01G036200 chr6D 79.872 467 70 18 2905 3357 17286416 17285960 3.550000e-83 320.0
21 TraesCS6A01G036200 chr6D 98.830 171 2 0 1103 1273 17234774 17234604 9.940000e-79 305.0
22 TraesCS6A01G036200 chr6D 96.319 163 5 1 1691 1852 17234549 17234387 4.690000e-67 267.0
23 TraesCS6A01G036200 chr6D 96.250 160 6 0 1853 2012 17234271 17234112 6.070000e-66 263.0
24 TraesCS6A01G036200 chr6D 84.436 257 40 0 2892 3148 17300291 17300035 3.650000e-63 254.0
25 TraesCS6A01G036200 chr6D 75.682 403 83 12 4985 5376 17309597 17309199 3.760000e-43 187.0
26 TraesCS6A01G036200 chr6D 73.589 496 111 17 2300 2784 88887684 88887198 1.050000e-38 172.0
27 TraesCS6A01G036200 chr6D 79.675 246 43 5 3194 3434 17299959 17299716 3.780000e-38 171.0
28 TraesCS6A01G036200 chr6D 83.168 101 6 6 1853 1953 17315239 17315150 1.820000e-11 82.4
29 TraesCS6A01G036200 chr3A 94.251 1322 37 6 6567 7887 36050774 36049491 0.000000e+00 1984.0
30 TraesCS6A01G036200 chr3A 91.908 1347 41 21 6567 7886 24903705 24905010 0.000000e+00 1821.0
31 TraesCS6A01G036200 chr5D 94.038 1325 35 8 6567 7887 537772172 537773456 0.000000e+00 1969.0
32 TraesCS6A01G036200 chr5D 96.340 929 25 7 6960 7887 543866951 543866031 0.000000e+00 1519.0
33 TraesCS6A01G036200 chr2A 93.529 1329 44 17 6567 7887 719258318 719257024 0.000000e+00 1940.0
34 TraesCS6A01G036200 chr2A 80.000 310 49 10 2501 2806 44836069 44836369 4.790000e-52 217.0
35 TraesCS6A01G036200 chr2A 100.000 28 0 0 6337 6364 78457481 78457508 1.400000e-02 52.8
36 TraesCS6A01G036200 chr7A 93.454 1329 45 16 6567 7887 70821416 70820122 0.000000e+00 1934.0
37 TraesCS6A01G036200 chr7A 85.135 74 11 0 3969 4042 4788170 4788243 8.490000e-10 76.8
38 TraesCS6A01G036200 chr2D 93.213 1326 46 22 6567 7887 645196732 645195446 0.000000e+00 1910.0
39 TraesCS6A01G036200 chr2D 98.140 430 6 2 6567 6995 645618150 645617722 0.000000e+00 749.0
40 TraesCS6A01G036200 chr2D 97.674 430 8 2 6567 6995 19059242 19058814 0.000000e+00 737.0
41 TraesCS6A01G036200 chr2D 89.058 329 30 3 461 783 644548261 644547933 3.430000e-108 403.0
42 TraesCS6A01G036200 chr2D 86.667 315 38 3 462 772 71705549 71705235 5.860000e-91 346.0
43 TraesCS6A01G036200 chr2D 77.149 477 86 11 2892 3347 43282486 43282960 1.020000e-63 255.0
44 TraesCS6A01G036200 chr2D 96.875 32 1 0 6002 6033 43362770 43362801 4.000000e-03 54.7
45 TraesCS6A01G036200 chr3D 93.137 1326 46 16 6567 7887 537298425 537297140 0.000000e+00 1903.0
46 TraesCS6A01G036200 chr3D 97.912 431 6 3 6567 6995 560041126 560041555 0.000000e+00 743.0
47 TraesCS6A01G036200 chr3D 97.669 429 8 2 6567 6994 124551163 124551590 0.000000e+00 736.0
48 TraesCS6A01G036200 chr3D 91.318 311 23 2 470 776 593452930 593452620 9.460000e-114 422.0
49 TraesCS6A01G036200 chr4D 98.140 430 7 1 6567 6995 509407919 509408348 0.000000e+00 749.0
50 TraesCS6A01G036200 chr7D 97.907 430 8 1 6567 6995 49813758 49813329 0.000000e+00 743.0
51 TraesCS6A01G036200 chr1D 97.669 429 9 1 6567 6994 423017692 423017264 0.000000e+00 736.0
52 TraesCS6A01G036200 chr6B 81.062 697 114 15 2136 2826 30298227 30297543 2.500000e-149 540.0
53 TraesCS6A01G036200 chr6B 92.459 305 21 1 460 762 58806485 58806181 1.220000e-117 435.0
54 TraesCS6A01G036200 chr6B 89.873 316 28 3 461 772 550721117 550720802 3.430000e-108 403.0
55 TraesCS6A01G036200 chr6B 78.336 577 93 21 2890 3446 30296586 30296022 2.110000e-90 344.0
56 TraesCS6A01G036200 chr6B 79.832 476 74 17 2892 3351 30245875 30245406 2.120000e-85 327.0
57 TraesCS6A01G036200 chr6B 84.959 246 36 1 2903 3148 30279077 30278833 1.700000e-61 248.0
58 TraesCS6A01G036200 chr6B 89.362 141 15 0 2639 2779 30560164 30560024 2.260000e-40 178.0
59 TraesCS6A01G036200 chr6B 80.321 249 36 9 3194 3434 30278757 30278514 8.130000e-40 176.0
60 TraesCS6A01G036200 chr6B 77.509 289 55 5 2150 2434 30234999 30234717 1.760000e-36 165.0
61 TraesCS6A01G036200 chr4B 92.138 318 20 4 461 773 82605164 82604847 2.020000e-120 444.0
62 TraesCS6A01G036200 chrUn 90.536 317 26 3 461 773 79228706 79229022 4.400000e-112 416.0
63 TraesCS6A01G036200 chr2B 89.320 309 27 4 468 772 88624327 88624633 4.470000e-102 383.0
64 TraesCS6A01G036200 chr5B 88.608 316 28 5 461 772 6363335 6363024 2.080000e-100 377.0
65 TraesCS6A01G036200 chr5A 94.444 36 2 0 5998 6033 314163653 314163688 1.000000e-03 56.5
66 TraesCS6A01G036200 chr5A 100.000 28 0 0 1020 1047 64312235 64312262 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G036200 chr6A 17825073 17832959 7886 True 6897.500000 11444 100.000000 1 7887 2 chr6A.!!$R3 7886
1 TraesCS6A01G036200 chr6A 17924058 17926136 2078 True 483.750000 593 89.867000 867 5459 4 chr6A.!!$R4 4592
2 TraesCS6A01G036200 chr6A 17932293 17935838 3545 True 349.666667 527 82.319000 154 5189 3 chr6A.!!$R5 5035
3 TraesCS6A01G036200 chr6D 436433395 436434681 1286 True 1971.000000 1971 94.038000 6567 7887 1 chr6D.!!$R7 1320
4 TraesCS6A01G036200 chr6D 17229572 17235561 5989 True 1587.166667 7605 95.906500 52 6570 6 chr6D.!!$R8 6518
5 TraesCS6A01G036200 chr6D 17297924 17300291 2367 True 455.333333 941 80.910333 2892 5369 3 chr6D.!!$R10 2477
6 TraesCS6A01G036200 chr6D 17186236 17187185 949 True 440.000000 440 75.615000 4325 5278 1 chr6D.!!$R1 953
7 TraesCS6A01G036200 chr6D 17284896 17286416 1520 True 341.500000 363 80.316500 2905 4344 2 chr6D.!!$R9 1439
8 TraesCS6A01G036200 chr3A 36049491 36050774 1283 True 1984.000000 1984 94.251000 6567 7887 1 chr3A.!!$R1 1320
9 TraesCS6A01G036200 chr3A 24903705 24905010 1305 False 1821.000000 1821 91.908000 6567 7886 1 chr3A.!!$F1 1319
10 TraesCS6A01G036200 chr5D 537772172 537773456 1284 False 1969.000000 1969 94.038000 6567 7887 1 chr5D.!!$F1 1320
11 TraesCS6A01G036200 chr5D 543866031 543866951 920 True 1519.000000 1519 96.340000 6960 7887 1 chr5D.!!$R1 927
12 TraesCS6A01G036200 chr2A 719257024 719258318 1294 True 1940.000000 1940 93.529000 6567 7887 1 chr2A.!!$R1 1320
13 TraesCS6A01G036200 chr7A 70820122 70821416 1294 True 1934.000000 1934 93.454000 6567 7887 1 chr7A.!!$R1 1320
14 TraesCS6A01G036200 chr2D 645195446 645196732 1286 True 1910.000000 1910 93.213000 6567 7887 1 chr2D.!!$R4 1320
15 TraesCS6A01G036200 chr3D 537297140 537298425 1285 True 1903.000000 1903 93.137000 6567 7887 1 chr3D.!!$R1 1320
16 TraesCS6A01G036200 chr6B 30296022 30298227 2205 True 442.000000 540 79.699000 2136 3446 2 chr6B.!!$R7 1310
17 TraesCS6A01G036200 chr6B 30278514 30279077 563 True 212.000000 248 82.640000 2903 3434 2 chr6B.!!$R6 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 485 0.034186 TGTGGCATGGAACCAGATCC 60.034 55.000 0.00 1.49 38.04 3.36 F
515 529 0.109458 CGTGCTACGGTGCTTGTCTA 60.109 55.000 3.74 0.00 38.08 2.59 F
2274 2519 0.460722 TGATTGCAAATGGATGGCGG 59.539 50.000 1.71 0.00 0.00 6.13 F
2916 4100 2.644299 TCATCTGGTGGACTTGAATGGT 59.356 45.455 0.00 0.00 0.00 3.55 F
3068 4252 2.787473 TTGGTCTATCAAGGTGCCTG 57.213 50.000 0.00 0.00 0.00 4.85 F
3577 5548 3.626977 TGCGCTTATGTGTCAACTTTTG 58.373 40.909 9.73 0.00 0.00 2.44 F
4316 6311 0.809636 TGGTCATTATGTGGAGCGCG 60.810 55.000 0.00 0.00 34.39 6.86 F
5645 7663 1.018910 ACTTGGGTACGTGCAAACAC 58.981 50.000 5.86 0.00 43.76 3.32 F
5799 7819 1.525765 ATGTGCCAGTGCGTGTGAA 60.526 52.632 0.00 0.00 41.78 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 2487 1.809547 TGCAATCAATACCACACCACG 59.190 47.619 0.00 0.00 0.00 4.94 R
2290 2535 3.521560 CATGCGCTCTAGGTCAACTTTA 58.478 45.455 9.73 0.00 0.00 1.85 R
3577 5548 0.323087 GGGGTTACACATGTGGGGAC 60.323 60.000 28.64 21.35 34.19 4.46 R
3739 5711 0.988832 TCTTCGTGGGTTTGGGCTAT 59.011 50.000 0.00 0.00 0.00 2.97 R
4011 5983 2.754946 TCGGGTTCAAGTCCATACAC 57.245 50.000 0.00 0.00 0.00 2.90 R
5091 7107 3.198409 TGGTCAGCATGTATAGCCTTG 57.802 47.619 0.00 0.00 37.40 3.61 R
5792 7812 0.661187 GCCTGTGCACAATTCACACG 60.661 55.000 21.98 6.23 39.29 4.49 R
6469 8489 0.034896 CACCTTACTTCAGTGCCGGT 59.965 55.000 1.90 0.00 0.00 5.28 R
7529 9620 1.843851 CAGGGGCCCTATTCAGTGTTA 59.156 52.381 28.28 0.00 29.64 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.332395 TTTCCCACCCCGTGTTCA 58.668 55.556 0.00 0.00 0.00 3.18
18 19 1.149627 TTTCCCACCCCGTGTTCAG 59.850 57.895 0.00 0.00 0.00 3.02
19 20 2.969300 TTTCCCACCCCGTGTTCAGC 62.969 60.000 0.00 0.00 0.00 4.26
22 23 4.263572 CACCCCGTGTTCAGCCCA 62.264 66.667 0.00 0.00 0.00 5.36
23 24 3.953775 ACCCCGTGTTCAGCCCAG 61.954 66.667 0.00 0.00 0.00 4.45
24 25 4.722700 CCCCGTGTTCAGCCCAGG 62.723 72.222 0.00 0.00 0.00 4.45
25 26 4.722700 CCCGTGTTCAGCCCAGGG 62.723 72.222 0.00 0.00 37.55 4.45
26 27 4.722700 CCGTGTTCAGCCCAGGGG 62.723 72.222 7.91 3.48 34.88 4.79
44 45 3.319198 GGGACCACCGGAGCAGAA 61.319 66.667 9.46 0.00 36.97 3.02
45 46 2.747686 GGACCACCGGAGCAGAAA 59.252 61.111 9.46 0.00 0.00 2.52
46 47 1.671379 GGACCACCGGAGCAGAAAC 60.671 63.158 9.46 0.00 0.00 2.78
47 48 2.027625 GACCACCGGAGCAGAAACG 61.028 63.158 9.46 0.00 0.00 3.60
76 77 0.615331 ATGGTGGAGTTCGCATCACT 59.385 50.000 0.00 0.00 0.00 3.41
115 116 3.119637 GGATTTGTGGGGTGATACAAACG 60.120 47.826 4.86 0.00 46.01 3.60
119 120 2.879646 TGTGGGGTGATACAAACGTTTC 59.120 45.455 11.37 0.01 0.00 2.78
124 125 3.248125 GGGTGATACAAACGTTTCGTCAA 59.752 43.478 11.37 0.15 39.99 3.18
126 127 4.843984 GGTGATACAAACGTTTCGTCAATG 59.156 41.667 11.37 1.03 39.99 2.82
133 134 2.741612 ACGTTTCGTCAATGTACCGAA 58.258 42.857 0.57 0.57 33.69 4.30
140 143 4.417506 TCGTCAATGTACCGAACAGTATG 58.582 43.478 0.00 0.00 42.70 2.39
178 182 7.012421 GCTATTATTCTCCGGTTCATGTTTCTT 59.988 37.037 0.00 0.00 0.00 2.52
212 216 5.335113 CTGTAAAATGCTTTGCAGCTAGTGA 60.335 40.000 4.10 0.00 44.71 3.41
230 234 6.257630 GCTAGTGATTCTCTGAACCATTCTTC 59.742 42.308 0.00 0.00 0.00 2.87
276 283 1.630369 AGTGCTTCTATGGACTTGGCA 59.370 47.619 0.00 0.00 35.04 4.92
284 291 4.704833 GGACTTGGCAGCGGCAGA 62.705 66.667 11.88 0.00 43.71 4.26
285 292 2.669569 GACTTGGCAGCGGCAGAA 60.670 61.111 11.88 1.63 43.71 3.02
291 298 3.885521 GCAGCGGCAGAAGCATCC 61.886 66.667 3.18 0.00 44.61 3.51
292 299 2.437180 CAGCGGCAGAAGCATCCA 60.437 61.111 1.45 0.00 44.61 3.41
294 301 1.822613 AGCGGCAGAAGCATCCATG 60.823 57.895 1.45 0.00 44.61 3.66
309 323 3.419264 TCCATGCATGCATTCGTTAAC 57.581 42.857 30.32 0.00 33.90 2.01
323 337 0.782384 GTTAACAGCGACCGTCACAG 59.218 55.000 0.00 0.00 0.00 3.66
325 339 2.758770 TAACAGCGACCGTCACAGGC 62.759 60.000 0.00 0.00 33.69 4.85
327 341 4.363990 AGCGACCGTCACAGGCAG 62.364 66.667 0.00 0.00 33.69 4.85
386 400 7.359262 TCAGGTTCATTATTCGTTAACAGTG 57.641 36.000 6.39 0.00 0.00 3.66
397 411 5.601583 TCGTTAACAGTGGCCAGATATTA 57.398 39.130 5.11 0.00 0.00 0.98
398 412 6.169557 TCGTTAACAGTGGCCAGATATTAT 57.830 37.500 5.11 0.00 0.00 1.28
399 413 6.588204 TCGTTAACAGTGGCCAGATATTATT 58.412 36.000 5.11 0.00 0.00 1.40
452 466 4.082523 CATGGCACGGACGGGTCT 62.083 66.667 0.00 0.00 0.00 3.85
453 467 4.082523 ATGGCACGGACGGGTCTG 62.083 66.667 6.11 6.11 41.63 3.51
459 473 4.082523 CGGACGGGTCTGTGGCAT 62.083 66.667 0.00 0.00 0.00 4.40
460 474 2.436646 GGACGGGTCTGTGGCATG 60.437 66.667 0.00 0.00 0.00 4.06
461 475 2.436646 GACGGGTCTGTGGCATGG 60.437 66.667 0.00 0.00 0.00 3.66
462 476 2.927856 ACGGGTCTGTGGCATGGA 60.928 61.111 0.00 0.00 0.00 3.41
463 477 2.350895 CGGGTCTGTGGCATGGAA 59.649 61.111 0.00 0.00 0.00 3.53
465 479 1.678970 GGGTCTGTGGCATGGAACC 60.679 63.158 10.20 10.20 0.00 3.62
466 480 1.074775 GGTCTGTGGCATGGAACCA 59.925 57.895 0.00 0.00 33.84 3.67
467 481 0.962356 GGTCTGTGGCATGGAACCAG 60.962 60.000 0.00 0.00 38.04 4.00
470 484 1.065199 TCTGTGGCATGGAACCAGATC 60.065 52.381 0.00 0.00 38.04 2.75
471 485 0.034186 TGTGGCATGGAACCAGATCC 60.034 55.000 0.00 1.49 38.04 3.36
472 486 0.257039 GTGGCATGGAACCAGATCCT 59.743 55.000 0.00 0.00 40.35 3.24
473 487 0.548031 TGGCATGGAACCAGATCCTC 59.452 55.000 0.00 0.00 40.35 3.71
474 488 0.842635 GGCATGGAACCAGATCCTCT 59.157 55.000 0.00 0.00 40.35 3.69
475 489 2.050144 GGCATGGAACCAGATCCTCTA 58.950 52.381 0.00 0.00 40.35 2.43
476 490 2.439507 GGCATGGAACCAGATCCTCTAA 59.560 50.000 0.00 0.00 40.35 2.10
477 491 3.471680 GCATGGAACCAGATCCTCTAAC 58.528 50.000 0.00 0.00 40.35 2.34
478 492 3.118261 GCATGGAACCAGATCCTCTAACA 60.118 47.826 0.00 0.00 40.35 2.41
479 493 4.445448 GCATGGAACCAGATCCTCTAACAT 60.445 45.833 0.00 0.00 40.35 2.71
480 494 5.688807 CATGGAACCAGATCCTCTAACATT 58.311 41.667 0.00 0.00 40.35 2.71
481 495 5.359194 TGGAACCAGATCCTCTAACATTC 57.641 43.478 0.00 0.00 40.35 2.67
482 496 4.782691 TGGAACCAGATCCTCTAACATTCA 59.217 41.667 0.00 0.00 40.35 2.57
483 497 5.119694 GGAACCAGATCCTCTAACATTCAC 58.880 45.833 0.00 0.00 36.50 3.18
484 498 5.338381 GGAACCAGATCCTCTAACATTCACA 60.338 44.000 0.00 0.00 36.50 3.58
485 499 5.762179 ACCAGATCCTCTAACATTCACAA 57.238 39.130 0.00 0.00 0.00 3.33
486 500 6.126863 ACCAGATCCTCTAACATTCACAAA 57.873 37.500 0.00 0.00 0.00 2.83
487 501 6.542821 ACCAGATCCTCTAACATTCACAAAA 58.457 36.000 0.00 0.00 0.00 2.44
488 502 7.004086 ACCAGATCCTCTAACATTCACAAAAA 58.996 34.615 0.00 0.00 0.00 1.94
513 527 3.156334 CGTGCTACGGTGCTTGTC 58.844 61.111 3.74 0.00 38.08 3.18
514 528 1.372997 CGTGCTACGGTGCTTGTCT 60.373 57.895 3.74 0.00 38.08 3.41
515 529 0.109458 CGTGCTACGGTGCTTGTCTA 60.109 55.000 3.74 0.00 38.08 2.59
516 530 1.630148 GTGCTACGGTGCTTGTCTAG 58.370 55.000 3.74 0.00 0.00 2.43
517 531 1.067776 GTGCTACGGTGCTTGTCTAGT 60.068 52.381 3.74 0.00 0.00 2.57
518 532 1.201647 TGCTACGGTGCTTGTCTAGTC 59.798 52.381 3.74 0.00 0.00 2.59
519 533 1.473278 GCTACGGTGCTTGTCTAGTCT 59.527 52.381 0.00 0.00 0.00 3.24
520 534 2.681848 GCTACGGTGCTTGTCTAGTCTA 59.318 50.000 0.00 0.00 0.00 2.59
521 535 3.128242 GCTACGGTGCTTGTCTAGTCTAA 59.872 47.826 0.00 0.00 0.00 2.10
522 536 4.380233 GCTACGGTGCTTGTCTAGTCTAAA 60.380 45.833 0.00 0.00 0.00 1.85
523 537 4.803098 ACGGTGCTTGTCTAGTCTAAAT 57.197 40.909 0.00 0.00 0.00 1.40
524 538 5.148651 ACGGTGCTTGTCTAGTCTAAATT 57.851 39.130 0.00 0.00 0.00 1.82
525 539 5.169295 ACGGTGCTTGTCTAGTCTAAATTC 58.831 41.667 0.00 0.00 0.00 2.17
526 540 5.168569 CGGTGCTTGTCTAGTCTAAATTCA 58.831 41.667 0.00 0.00 0.00 2.57
527 541 5.637810 CGGTGCTTGTCTAGTCTAAATTCAA 59.362 40.000 0.00 0.00 0.00 2.69
528 542 6.183360 CGGTGCTTGTCTAGTCTAAATTCAAG 60.183 42.308 0.00 0.00 35.43 3.02
529 543 6.874134 GGTGCTTGTCTAGTCTAAATTCAAGA 59.126 38.462 0.00 0.00 34.62 3.02
530 544 7.387948 GGTGCTTGTCTAGTCTAAATTCAAGAA 59.612 37.037 0.00 0.00 34.62 2.52
531 545 8.439286 GTGCTTGTCTAGTCTAAATTCAAGAAG 58.561 37.037 0.00 0.00 34.62 2.85
532 546 7.604164 TGCTTGTCTAGTCTAAATTCAAGAAGG 59.396 37.037 0.00 0.00 34.62 3.46
533 547 7.819900 GCTTGTCTAGTCTAAATTCAAGAAGGA 59.180 37.037 0.00 0.00 34.62 3.36
534 548 9.712305 CTTGTCTAGTCTAAATTCAAGAAGGAA 57.288 33.333 0.00 0.00 34.62 3.36
536 550 9.712305 TGTCTAGTCTAAATTCAAGAAGGAAAG 57.288 33.333 0.00 0.00 0.00 2.62
537 551 9.713713 GTCTAGTCTAAATTCAAGAAGGAAAGT 57.286 33.333 0.00 0.00 0.00 2.66
545 559 8.753497 AAATTCAAGAAGGAAAGTTAGACTGT 57.247 30.769 0.00 0.00 0.00 3.55
546 560 8.753497 AATTCAAGAAGGAAAGTTAGACTGTT 57.247 30.769 0.00 0.00 0.00 3.16
547 561 9.847224 AATTCAAGAAGGAAAGTTAGACTGTTA 57.153 29.630 0.00 0.00 0.00 2.41
548 562 8.888579 TTCAAGAAGGAAAGTTAGACTGTTAG 57.111 34.615 0.00 0.00 0.00 2.34
549 563 6.929606 TCAAGAAGGAAAGTTAGACTGTTAGC 59.070 38.462 0.00 0.00 0.00 3.09
550 564 6.420913 AGAAGGAAAGTTAGACTGTTAGCA 57.579 37.500 0.00 0.00 0.00 3.49
552 566 6.267928 AGAAGGAAAGTTAGACTGTTAGCAGA 59.732 38.462 14.09 0.00 45.28 4.26
553 567 6.613153 AGGAAAGTTAGACTGTTAGCAGAT 57.387 37.500 14.09 4.12 45.28 2.90
554 568 7.010339 AGGAAAGTTAGACTGTTAGCAGATT 57.990 36.000 14.09 3.47 45.28 2.40
555 569 6.876257 AGGAAAGTTAGACTGTTAGCAGATTG 59.124 38.462 14.09 0.00 45.28 2.67
556 570 6.651225 GGAAAGTTAGACTGTTAGCAGATTGT 59.349 38.462 14.09 0.00 45.28 2.71
557 571 7.173390 GGAAAGTTAGACTGTTAGCAGATTGTT 59.827 37.037 14.09 0.00 45.28 2.83
558 572 8.451908 AAAGTTAGACTGTTAGCAGATTGTTT 57.548 30.769 14.09 2.80 45.28 2.83
559 573 9.555727 AAAGTTAGACTGTTAGCAGATTGTTTA 57.444 29.630 14.09 0.00 45.28 2.01
560 574 8.535690 AGTTAGACTGTTAGCAGATTGTTTAC 57.464 34.615 14.09 2.52 45.28 2.01
561 575 8.368668 AGTTAGACTGTTAGCAGATTGTTTACT 58.631 33.333 14.09 4.55 45.28 2.24
562 576 8.436200 GTTAGACTGTTAGCAGATTGTTTACTG 58.564 37.037 14.09 0.00 45.28 2.74
563 577 6.525629 AGACTGTTAGCAGATTGTTTACTGT 58.474 36.000 14.09 0.00 45.28 3.55
564 578 6.992715 AGACTGTTAGCAGATTGTTTACTGTT 59.007 34.615 14.09 0.00 45.28 3.16
565 579 6.959361 ACTGTTAGCAGATTGTTTACTGTTG 58.041 36.000 14.09 0.00 45.28 3.33
566 580 6.765989 ACTGTTAGCAGATTGTTTACTGTTGA 59.234 34.615 14.09 0.00 45.28 3.18
567 581 7.445402 ACTGTTAGCAGATTGTTTACTGTTGAT 59.555 33.333 14.09 0.00 45.28 2.57
568 582 8.840833 TGTTAGCAGATTGTTTACTGTTGATA 57.159 30.769 0.00 0.00 36.62 2.15
569 583 9.448438 TGTTAGCAGATTGTTTACTGTTGATAT 57.552 29.630 0.00 0.00 36.62 1.63
703 717 9.866655 AAGTGATTTTAGGCTTAATCATATGGA 57.133 29.630 20.55 2.44 41.35 3.41
713 727 9.956640 AGGCTTAATCATATGGATAGAAAGAAG 57.043 33.333 2.13 0.00 34.28 2.85
714 728 9.171877 GGCTTAATCATATGGATAGAAAGAAGG 57.828 37.037 2.13 0.00 34.28 3.46
715 729 9.950496 GCTTAATCATATGGATAGAAAGAAGGA 57.050 33.333 2.13 0.00 34.28 3.36
724 738 6.958767 TGGATAGAAAGAAGGAAAGTTAGGG 58.041 40.000 0.00 0.00 0.00 3.53
725 739 6.504279 TGGATAGAAAGAAGGAAAGTTAGGGT 59.496 38.462 0.00 0.00 0.00 4.34
726 740 7.681168 TGGATAGAAAGAAGGAAAGTTAGGGTA 59.319 37.037 0.00 0.00 0.00 3.69
727 741 7.986320 GGATAGAAAGAAGGAAAGTTAGGGTAC 59.014 40.741 0.00 0.00 0.00 3.34
728 742 8.682297 ATAGAAAGAAGGAAAGTTAGGGTACT 57.318 34.615 0.00 0.00 0.00 2.73
729 743 6.770542 AGAAAGAAGGAAAGTTAGGGTACTG 58.229 40.000 0.00 0.00 0.00 2.74
730 744 6.329460 AGAAAGAAGGAAAGTTAGGGTACTGT 59.671 38.462 0.00 0.00 0.00 3.55
731 745 7.511714 AGAAAGAAGGAAAGTTAGGGTACTGTA 59.488 37.037 0.00 0.00 0.00 2.74
732 746 6.854091 AGAAGGAAAGTTAGGGTACTGTAG 57.146 41.667 0.00 0.00 0.00 2.74
733 747 6.559429 AGAAGGAAAGTTAGGGTACTGTAGA 58.441 40.000 0.00 0.00 0.00 2.59
734 748 7.190501 AGAAGGAAAGTTAGGGTACTGTAGAT 58.809 38.462 0.00 0.00 0.00 1.98
735 749 7.679025 AGAAGGAAAGTTAGGGTACTGTAGATT 59.321 37.037 0.00 0.00 0.00 2.40
736 750 7.421087 AGGAAAGTTAGGGTACTGTAGATTC 57.579 40.000 0.00 0.00 0.00 2.52
737 751 7.190501 AGGAAAGTTAGGGTACTGTAGATTCT 58.809 38.462 0.00 0.00 0.00 2.40
738 752 7.124448 AGGAAAGTTAGGGTACTGTAGATTCTG 59.876 40.741 0.00 0.00 0.00 3.02
739 753 7.093421 GGAAAGTTAGGGTACTGTAGATTCTGT 60.093 40.741 0.00 0.00 0.00 3.41
740 754 8.890410 AAAGTTAGGGTACTGTAGATTCTGTA 57.110 34.615 0.00 0.00 0.00 2.74
741 755 8.890410 AAGTTAGGGTACTGTAGATTCTGTAA 57.110 34.615 0.00 0.00 0.00 2.41
742 756 8.291191 AGTTAGGGTACTGTAGATTCTGTAAC 57.709 38.462 0.00 0.00 0.00 2.50
743 757 7.892241 AGTTAGGGTACTGTAGATTCTGTAACA 59.108 37.037 0.00 0.00 33.26 2.41
744 758 8.693625 GTTAGGGTACTGTAGATTCTGTAACAT 58.306 37.037 0.00 0.00 33.26 2.71
745 759 7.735326 AGGGTACTGTAGATTCTGTAACATT 57.265 36.000 0.00 0.00 33.26 2.71
746 760 7.783042 AGGGTACTGTAGATTCTGTAACATTC 58.217 38.462 0.00 0.00 33.26 2.67
747 761 6.985059 GGGTACTGTAGATTCTGTAACATTCC 59.015 42.308 0.00 0.00 33.26 3.01
748 762 7.147707 GGGTACTGTAGATTCTGTAACATTCCT 60.148 40.741 0.00 0.00 33.26 3.36
749 763 8.258708 GGTACTGTAGATTCTGTAACATTCCTT 58.741 37.037 0.00 0.00 32.37 3.36
750 764 9.088512 GTACTGTAGATTCTGTAACATTCCTTG 57.911 37.037 0.00 0.00 0.00 3.61
751 765 7.680730 ACTGTAGATTCTGTAACATTCCTTGT 58.319 34.615 0.00 0.00 41.53 3.16
752 766 7.604164 ACTGTAGATTCTGTAACATTCCTTGTG 59.396 37.037 0.00 0.00 38.99 3.33
753 767 7.676004 TGTAGATTCTGTAACATTCCTTGTGA 58.324 34.615 0.00 0.00 38.99 3.58
754 768 8.154203 TGTAGATTCTGTAACATTCCTTGTGAA 58.846 33.333 0.00 0.00 38.99 3.18
755 769 9.167311 GTAGATTCTGTAACATTCCTTGTGAAT 57.833 33.333 0.00 0.00 44.67 2.57
766 780 4.137116 TCCTTGTGAATGTTAGGATCCG 57.863 45.455 5.98 0.00 32.00 4.18
767 781 3.118408 TCCTTGTGAATGTTAGGATCCGG 60.118 47.826 5.98 0.00 32.00 5.14
768 782 3.370527 CCTTGTGAATGTTAGGATCCGGT 60.371 47.826 5.98 0.00 0.00 5.28
769 783 3.992943 TGTGAATGTTAGGATCCGGTT 57.007 42.857 5.98 0.00 0.00 4.44
770 784 3.869065 TGTGAATGTTAGGATCCGGTTC 58.131 45.455 5.98 1.67 0.00 3.62
771 785 3.203716 GTGAATGTTAGGATCCGGTTCC 58.796 50.000 22.05 22.05 35.90 3.62
1062 1083 3.458118 TCCTGTCCAAAGTCTTCTTTCCA 59.542 43.478 0.00 0.00 41.31 3.53
1106 1127 1.279496 CCCTCAGGTTGTCTGGATCA 58.721 55.000 0.00 0.00 43.53 2.92
1108 1129 1.209019 CCTCAGGTTGTCTGGATCAGG 59.791 57.143 0.00 0.00 43.53 3.86
1109 1130 1.905215 CTCAGGTTGTCTGGATCAGGT 59.095 52.381 0.00 0.00 43.53 4.00
1110 1131 1.902508 TCAGGTTGTCTGGATCAGGTC 59.097 52.381 0.00 0.00 43.53 3.85
1111 1132 1.625315 CAGGTTGTCTGGATCAGGTCA 59.375 52.381 0.00 0.00 39.76 4.02
1112 1133 2.238144 CAGGTTGTCTGGATCAGGTCAT 59.762 50.000 0.00 0.00 39.76 3.06
1113 1134 3.452264 CAGGTTGTCTGGATCAGGTCATA 59.548 47.826 0.00 0.00 39.76 2.15
1114 1135 3.452627 AGGTTGTCTGGATCAGGTCATAC 59.547 47.826 0.00 0.00 31.51 2.39
1889 2067 7.312657 TCTTGTATTGCAGATTCTTGTGATC 57.687 36.000 0.00 0.00 0.00 2.92
1892 2070 7.634671 TGTATTGCAGATTCTTGTGATCAAT 57.365 32.000 0.00 0.00 32.82 2.57
1900 2078 7.415318 GCAGATTCTTGTGATCAATTCATCAGT 60.415 37.037 0.00 0.00 36.54 3.41
1997 2242 3.951775 TGCCAATCGTTGCCTTTTATT 57.048 38.095 0.00 0.00 0.00 1.40
1998 2243 5.105554 ACATGCCAATCGTTGCCTTTTATTA 60.106 36.000 0.00 0.00 0.00 0.98
1999 2244 5.590530 TGCCAATCGTTGCCTTTTATTAT 57.409 34.783 0.00 0.00 0.00 1.28
2000 2245 5.971763 TGCCAATCGTTGCCTTTTATTATT 58.028 33.333 0.00 0.00 0.00 1.40
2001 2246 7.101652 TGCCAATCGTTGCCTTTTATTATTA 57.898 32.000 0.00 0.00 0.00 0.98
2002 2247 7.721402 TGCCAATCGTTGCCTTTTATTATTAT 58.279 30.769 0.00 0.00 0.00 1.28
2003 2248 8.200792 TGCCAATCGTTGCCTTTTATTATTATT 58.799 29.630 0.00 0.00 0.00 1.40
2004 2249 9.685828 GCCAATCGTTGCCTTTTATTATTATTA 57.314 29.630 0.00 0.00 0.00 0.98
2074 2319 9.043548 ACTTGAGTACCTACCTAATATGTTGTT 57.956 33.333 0.00 0.00 0.00 2.83
2220 2465 5.105797 TGGACTCAAAACAATGGCATATGTC 60.106 40.000 0.00 0.00 0.00 3.06
2274 2519 0.460722 TGATTGCAAATGGATGGCGG 59.539 50.000 1.71 0.00 0.00 6.13
2290 2535 4.908601 TGGCGGAATTGGTATCAGATAT 57.091 40.909 0.00 0.00 0.00 1.63
2371 2616 6.355638 GTTGTCACTTTTAGAAGACATCACG 58.644 40.000 0.00 0.00 40.32 4.35
2470 2715 5.542616 AAGCTTTCTCATTCTTGATCACG 57.457 39.130 0.00 0.00 0.00 4.35
2489 2770 4.811557 TCACGATTTATCACACACACACAA 59.188 37.500 0.00 0.00 0.00 3.33
2881 3357 4.648762 CAGGTATCCCATATGTTTGCCAAA 59.351 41.667 1.24 0.00 0.00 3.28
2883 3359 6.493115 CAGGTATCCCATATGTTTGCCAAATA 59.507 38.462 1.24 0.00 0.00 1.40
2916 4100 2.644299 TCATCTGGTGGACTTGAATGGT 59.356 45.455 0.00 0.00 0.00 3.55
3068 4252 2.787473 TTGGTCTATCAAGGTGCCTG 57.213 50.000 0.00 0.00 0.00 4.85
3280 4504 9.944376 ATATACAGTCTTGGCGTTATAATCATT 57.056 29.630 0.00 0.00 0.00 2.57
3473 5402 5.630415 TCTTGGCCTAATATGTAGCACTT 57.370 39.130 3.32 0.00 0.00 3.16
3558 5488 9.087424 GAACTTATAAGGAAATGTGGAAAATGC 57.913 33.333 16.73 0.00 0.00 3.56
3577 5548 3.626977 TGCGCTTATGTGTCAACTTTTG 58.373 40.909 9.73 0.00 0.00 2.44
3624 5595 8.421249 AAGACCTAAATGTGGATTGAAAATGA 57.579 30.769 0.00 0.00 0.00 2.57
3629 5600 7.972277 CCTAAATGTGGATTGAAAATGACTGAG 59.028 37.037 0.00 0.00 0.00 3.35
3642 5613 7.173907 TGAAAATGACTGAGATTCTTGAACTCC 59.826 37.037 0.00 0.00 0.00 3.85
3739 5711 5.580691 CGAAGATAGGTGACAAGTTTGCATA 59.419 40.000 0.00 0.00 0.00 3.14
3779 5751 4.019321 AGAAATGCAACCAGAAGCTAGGTA 60.019 41.667 5.91 0.00 37.07 3.08
3958 5930 4.284234 TGAATCGATTGGAGGCATCAGATA 59.716 41.667 16.96 0.00 0.00 1.98
4011 5983 8.052748 AGAGTATGTGCTAAGATAGGGATAGAG 58.947 40.741 0.00 0.00 0.00 2.43
4124 6099 4.509970 CAGTAGTTCATCGGTCAAACAACA 59.490 41.667 0.00 0.00 0.00 3.33
4209 6202 2.886523 TGGAAAGGACATCAAGCAACAG 59.113 45.455 0.00 0.00 0.00 3.16
4316 6311 0.809636 TGGTCATTATGTGGAGCGCG 60.810 55.000 0.00 0.00 34.39 6.86
4335 6330 4.499040 GCGCGTGATACAAAGCAAAATATT 59.501 37.500 8.43 0.00 0.00 1.28
4362 6357 6.155156 TCCACAAGGTGCAAGTATTTCTTGT 61.155 40.000 8.92 0.00 44.19 3.16
4420 6415 7.715657 TCTAGACATTTTCAACACAAAAGCAT 58.284 30.769 0.00 0.00 0.00 3.79
4422 6417 6.108015 AGACATTTTCAACACAAAAGCATGT 58.892 32.000 0.00 0.00 0.00 3.21
4811 6809 8.551205 CAACTTGAGTGTGCGATATAATATTGT 58.449 33.333 0.00 0.00 0.00 2.71
4926 6924 5.177142 CGATGATAATCTCTTCAGTGGCAAG 59.823 44.000 0.00 0.00 0.00 4.01
5091 7107 3.056749 TCTTGGAACTTCTTACTCGGAGC 60.057 47.826 4.58 0.00 0.00 4.70
5129 7145 4.081642 TGACCATAACAGCTTAGTGAGGAC 60.082 45.833 0.00 0.00 0.00 3.85
5262 7278 2.687370 TGTCTTGACGATGATGTGGTG 58.313 47.619 0.00 0.00 0.00 4.17
5287 7303 3.096852 AGACCGTCAATGGTAGATGTCA 58.903 45.455 0.40 0.00 44.01 3.58
5293 7309 5.123820 CCGTCAATGGTAGATGTCACAAAAT 59.876 40.000 0.00 0.00 0.00 1.82
5533 7550 7.372260 AGTACTTCCTCTATTCTACTCCGTA 57.628 40.000 0.00 0.00 0.00 4.02
5552 7569 4.202090 CCGTATGTAGTCCCTTGTAGGAAC 60.202 50.000 0.00 0.00 37.67 3.62
5612 7630 9.573133 TTGCATCATTATATGTATCTCGTACTG 57.427 33.333 0.00 0.00 34.27 2.74
5643 7661 2.955607 GTACTTGGGTACGTGCAAAC 57.044 50.000 5.86 0.00 38.85 2.93
5644 7662 2.211806 GTACTTGGGTACGTGCAAACA 58.788 47.619 5.86 0.00 38.85 2.83
5645 7663 1.018910 ACTTGGGTACGTGCAAACAC 58.981 50.000 5.86 0.00 43.76 3.32
5662 7681 6.127498 CAAACACGTGTAAGATTTGCATTC 57.873 37.500 23.69 0.00 0.00 2.67
5704 7723 6.294564 TTGCACTACAACCTGTTTAACAAACA 60.295 34.615 0.00 4.55 40.20 2.83
5715 7734 4.398358 TGTTTAACAAACATGACCGGAACA 59.602 37.500 9.46 8.72 45.79 3.18
5792 7812 3.244976 GTTTCAATACATGTGCCAGTGC 58.755 45.455 9.11 0.00 38.26 4.40
5799 7819 1.525765 ATGTGCCAGTGCGTGTGAA 60.526 52.632 0.00 0.00 41.78 3.18
5946 7966 3.371965 AGCTGCAAATCCCATCATTCTT 58.628 40.909 1.02 0.00 0.00 2.52
6063 8083 2.135933 GCTCGTCAGTATTATGTGGCC 58.864 52.381 0.00 0.00 0.00 5.36
6099 8119 4.262420 GGCGTGGATTAAATATTGGGCAAT 60.262 41.667 0.00 0.00 34.93 3.56
6267 8287 6.049149 CCACACCATCAATACGAGTAAATCT 58.951 40.000 0.00 0.00 0.00 2.40
6368 8388 4.216257 CCTCCGCAAAGAAATATATGGTGG 59.784 45.833 0.00 0.00 0.00 4.61
6408 8428 4.329545 GCCAGTGGCGGTCAAGGA 62.330 66.667 20.55 0.00 39.62 3.36
6444 8464 2.126071 GCGCCGTGTTCTAGCAGA 60.126 61.111 0.00 0.00 0.00 4.26
6462 8482 3.242518 CAGACGTGTCGCTTGAATTAGA 58.757 45.455 0.00 0.00 34.09 2.10
6463 8483 3.673338 CAGACGTGTCGCTTGAATTAGAA 59.327 43.478 0.00 0.00 34.09 2.10
6464 8484 3.921021 AGACGTGTCGCTTGAATTAGAAG 59.079 43.478 0.00 0.00 34.09 2.85
6465 8485 2.993899 ACGTGTCGCTTGAATTAGAAGG 59.006 45.455 0.00 0.00 0.00 3.46
6469 8489 3.513912 TGTCGCTTGAATTAGAAGGGAGA 59.486 43.478 13.69 11.11 41.49 3.71
6546 8566 0.249398 GAAAGGAAGCCGTGGAGCTA 59.751 55.000 0.00 0.00 44.11 3.32
6594 8614 7.279981 CCTACAATATCTTCACCGATTTCAACA 59.720 37.037 0.00 0.00 0.00 3.33
6730 8777 1.957186 CCGAAGAACCCGCGTTTGA 60.957 57.895 4.92 0.00 30.30 2.69
6774 8823 9.621629 AGCTTGCTATAGATCTATCGTATTAGT 57.378 33.333 18.59 0.00 0.00 2.24
6960 9047 4.741321 ATTTGTGGATTGCTATGGGTTG 57.259 40.909 0.00 0.00 0.00 3.77
6961 9048 2.897271 TGTGGATTGCTATGGGTTGT 57.103 45.000 0.00 0.00 0.00 3.32
6962 9049 3.168035 TGTGGATTGCTATGGGTTGTT 57.832 42.857 0.00 0.00 0.00 2.83
6963 9050 3.505386 TGTGGATTGCTATGGGTTGTTT 58.495 40.909 0.00 0.00 0.00 2.83
6964 9051 3.900601 TGTGGATTGCTATGGGTTGTTTT 59.099 39.130 0.00 0.00 0.00 2.43
6965 9052 4.346418 TGTGGATTGCTATGGGTTGTTTTT 59.654 37.500 0.00 0.00 0.00 1.94
6966 9053 4.690280 GTGGATTGCTATGGGTTGTTTTTG 59.310 41.667 0.00 0.00 0.00 2.44
6967 9054 3.684305 GGATTGCTATGGGTTGTTTTTGC 59.316 43.478 0.00 0.00 0.00 3.68
6968 9055 4.563374 GGATTGCTATGGGTTGTTTTTGCT 60.563 41.667 0.00 0.00 0.00 3.91
6976 9063 8.817100 GCTATGGGTTGTTTTTGCTTATTATTC 58.183 33.333 0.00 0.00 0.00 1.75
6980 9067 6.643360 GGGTTGTTTTTGCTTATTATTCGTGT 59.357 34.615 0.00 0.00 0.00 4.49
7086 9173 6.267471 ACACACACCATCTTCAAAATATTGGT 59.733 34.615 0.00 0.00 37.96 3.67
7314 9401 4.890158 AGGCCAAAATAAAAGGACAAGG 57.110 40.909 5.01 0.00 30.87 3.61
7351 9438 4.574892 CCCCATTTTATTTGCCGAAGTTT 58.425 39.130 0.00 0.00 0.00 2.66
7421 9508 5.423931 GGTTATTTTCTCAGGGCCCATTTTA 59.576 40.000 27.56 2.67 0.00 1.52
7486 9577 9.629878 TTTTACTAGAAACTGAATTTGGGTGTA 57.370 29.630 0.00 0.00 0.00 2.90
7493 9584 8.822805 AGAAACTGAATTTGGGTGTATACTCTA 58.177 33.333 4.17 0.00 0.00 2.43
7524 9615 4.998788 AGAACAAAAACAGAGGAAACAGC 58.001 39.130 0.00 0.00 0.00 4.40
7529 9620 1.609208 AACAGAGGAAACAGCGCATT 58.391 45.000 11.47 0.00 0.00 3.56
7551 9642 0.918983 CACTGAATAGGGCCCCTGAA 59.081 55.000 21.43 1.27 34.61 3.02
7725 9816 9.567848 AACATCAAGTAAAATAAACCAATAGCG 57.432 29.630 0.00 0.00 0.00 4.26
7787 9878 4.696455 TGCTGCTTCAAATCGATCAGATA 58.304 39.130 12.33 0.10 38.98 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.149627 CTGAACACGGGGTGGGAAA 59.850 57.895 0.42 0.00 37.94 3.13
1 2 2.833227 CTGAACACGGGGTGGGAA 59.167 61.111 0.42 0.00 37.94 3.97
2 3 3.948719 GCTGAACACGGGGTGGGA 61.949 66.667 0.42 0.00 37.94 4.37
5 6 4.263572 TGGGCTGAACACGGGGTG 62.264 66.667 0.00 0.00 39.75 4.61
6 7 3.953775 CTGGGCTGAACACGGGGT 61.954 66.667 0.00 0.00 0.00 4.95
7 8 4.722700 CCTGGGCTGAACACGGGG 62.723 72.222 0.00 0.00 0.00 5.73
8 9 4.722700 CCCTGGGCTGAACACGGG 62.723 72.222 0.00 0.00 0.00 5.28
9 10 4.722700 CCCCTGGGCTGAACACGG 62.723 72.222 7.39 0.00 0.00 4.94
10 11 4.722700 CCCCCTGGGCTGAACACG 62.723 72.222 7.39 0.00 35.35 4.49
27 28 2.890766 TTTCTGCTCCGGTGGTCCC 61.891 63.158 0.00 0.00 0.00 4.46
28 29 1.671379 GTTTCTGCTCCGGTGGTCC 60.671 63.158 0.00 0.00 0.00 4.46
29 30 2.027625 CGTTTCTGCTCCGGTGGTC 61.028 63.158 0.00 0.00 0.00 4.02
30 31 2.030562 CGTTTCTGCTCCGGTGGT 59.969 61.111 0.00 0.00 0.00 4.16
31 32 2.742372 CCGTTTCTGCTCCGGTGG 60.742 66.667 0.00 0.00 37.00 4.61
34 35 0.245539 TAAGACCGTTTCTGCTCCGG 59.754 55.000 0.00 0.00 46.93 5.14
35 36 2.074547 TTAAGACCGTTTCTGCTCCG 57.925 50.000 0.00 0.00 33.46 4.63
36 37 3.596214 TCATTAAGACCGTTTCTGCTCC 58.404 45.455 0.00 0.00 33.46 4.70
37 38 4.034510 CCATCATTAAGACCGTTTCTGCTC 59.965 45.833 0.00 0.00 33.46 4.26
38 39 3.941483 CCATCATTAAGACCGTTTCTGCT 59.059 43.478 0.00 0.00 33.46 4.24
39 40 3.689649 ACCATCATTAAGACCGTTTCTGC 59.310 43.478 0.00 0.00 33.46 4.26
40 41 4.094887 CCACCATCATTAAGACCGTTTCTG 59.905 45.833 0.00 0.00 33.46 3.02
41 42 4.019681 TCCACCATCATTAAGACCGTTTCT 60.020 41.667 0.00 0.00 35.32 2.52
42 43 4.258543 TCCACCATCATTAAGACCGTTTC 58.741 43.478 0.00 0.00 0.00 2.78
43 44 4.261801 CTCCACCATCATTAAGACCGTTT 58.738 43.478 0.00 0.00 0.00 3.60
44 45 3.263425 ACTCCACCATCATTAAGACCGTT 59.737 43.478 0.00 0.00 0.00 4.44
45 46 2.838202 ACTCCACCATCATTAAGACCGT 59.162 45.455 0.00 0.00 0.00 4.83
46 47 3.543680 ACTCCACCATCATTAAGACCG 57.456 47.619 0.00 0.00 0.00 4.79
47 48 3.871594 CGAACTCCACCATCATTAAGACC 59.128 47.826 0.00 0.00 0.00 3.85
48 49 3.309954 GCGAACTCCACCATCATTAAGAC 59.690 47.826 0.00 0.00 0.00 3.01
49 50 3.055458 TGCGAACTCCACCATCATTAAGA 60.055 43.478 0.00 0.00 0.00 2.10
50 51 3.270027 TGCGAACTCCACCATCATTAAG 58.730 45.455 0.00 0.00 0.00 1.85
115 116 3.492011 ACTGTTCGGTACATTGACGAAAC 59.508 43.478 13.75 10.28 46.45 2.78
119 120 4.031314 CACATACTGTTCGGTACATTGACG 59.969 45.833 0.00 0.00 35.85 4.35
124 125 4.401519 AGCTACACATACTGTTCGGTACAT 59.598 41.667 0.00 0.00 35.85 2.29
126 127 4.142534 TGAGCTACACATACTGTTCGGTAC 60.143 45.833 0.00 0.00 33.91 3.34
178 182 1.340991 GCATTTTACAGCAGAGGGGGA 60.341 52.381 0.00 0.00 0.00 4.81
230 234 3.441222 TGCTTATGCTGAACCATGAACTG 59.559 43.478 0.00 0.00 40.48 3.16
265 272 4.349503 TGCCGCTGCCAAGTCCAT 62.350 61.111 0.00 0.00 36.33 3.41
273 280 3.885521 GATGCTTCTGCCGCTGCC 61.886 66.667 0.00 0.00 38.71 4.85
276 283 1.822613 CATGGATGCTTCTGCCGCT 60.823 57.895 0.00 0.00 38.71 5.52
291 298 2.532723 GCTGTTAACGAATGCATGCATG 59.467 45.455 32.79 23.00 36.68 4.06
292 299 2.792196 CGCTGTTAACGAATGCATGCAT 60.792 45.455 27.46 27.46 38.46 3.96
294 301 1.182673 CGCTGTTAACGAATGCATGC 58.817 50.000 11.82 11.82 0.00 4.06
296 303 1.396996 GGTCGCTGTTAACGAATGCAT 59.603 47.619 0.00 0.00 41.93 3.96
309 323 4.662961 TGCCTGTGACGGTCGCTG 62.663 66.667 21.05 19.57 0.00 5.18
323 337 3.667960 CGTGTAAAAGCAACTCATCTGCC 60.668 47.826 0.00 0.00 40.86 4.85
325 339 4.732285 ACGTGTAAAAGCAACTCATCTG 57.268 40.909 0.00 0.00 0.00 2.90
327 341 3.664025 GCAACGTGTAAAAGCAACTCATC 59.336 43.478 0.00 0.00 0.00 2.92
386 400 7.256286 GCAATGAATCTGAATAATATCTGGCC 58.744 38.462 0.00 0.00 0.00 5.36
397 411 4.515028 TCTGGAGGCAATGAATCTGAAT 57.485 40.909 0.00 0.00 0.00 2.57
398 412 4.165565 AGATCTGGAGGCAATGAATCTGAA 59.834 41.667 0.00 0.00 0.00 3.02
399 413 3.715315 AGATCTGGAGGCAATGAATCTGA 59.285 43.478 0.00 0.00 0.00 3.27
451 465 1.386533 GATCTGGTTCCATGCCACAG 58.613 55.000 0.00 0.00 31.85 3.66
452 466 0.034186 GGATCTGGTTCCATGCCACA 60.034 55.000 0.00 0.00 35.72 4.17
453 467 0.257039 AGGATCTGGTTCCATGCCAC 59.743 55.000 0.00 0.00 38.32 5.01
455 469 3.410960 GAGGATCTGGTTCCATGCC 57.589 57.895 0.00 0.00 38.32 4.40
496 510 0.109458 TAGACAAGCACCGTAGCACG 60.109 55.000 2.27 2.27 42.11 5.34
497 511 1.067776 ACTAGACAAGCACCGTAGCAC 60.068 52.381 0.00 0.00 36.85 4.40
498 512 1.201647 GACTAGACAAGCACCGTAGCA 59.798 52.381 0.00 0.00 36.85 3.49
499 513 1.473278 AGACTAGACAAGCACCGTAGC 59.527 52.381 0.00 0.00 0.00 3.58
500 514 4.959596 TTAGACTAGACAAGCACCGTAG 57.040 45.455 0.00 0.00 0.00 3.51
501 515 5.909621 ATTTAGACTAGACAAGCACCGTA 57.090 39.130 0.00 0.00 0.00 4.02
502 516 4.803098 ATTTAGACTAGACAAGCACCGT 57.197 40.909 0.00 0.00 0.00 4.83
503 517 5.168569 TGAATTTAGACTAGACAAGCACCG 58.831 41.667 0.00 0.00 0.00 4.94
504 518 6.874134 TCTTGAATTTAGACTAGACAAGCACC 59.126 38.462 0.00 0.00 35.00 5.01
505 519 7.891183 TCTTGAATTTAGACTAGACAAGCAC 57.109 36.000 0.00 0.00 35.00 4.40
506 520 7.604164 CCTTCTTGAATTTAGACTAGACAAGCA 59.396 37.037 0.00 0.00 35.00 3.91
507 521 7.819900 TCCTTCTTGAATTTAGACTAGACAAGC 59.180 37.037 0.00 0.00 35.00 4.01
508 522 9.712305 TTCCTTCTTGAATTTAGACTAGACAAG 57.288 33.333 0.00 0.00 35.90 3.16
510 524 9.712305 CTTTCCTTCTTGAATTTAGACTAGACA 57.288 33.333 0.00 0.00 0.00 3.41
511 525 9.713713 ACTTTCCTTCTTGAATTTAGACTAGAC 57.286 33.333 0.00 0.00 0.00 2.59
519 533 9.847224 ACAGTCTAACTTTCCTTCTTGAATTTA 57.153 29.630 0.00 0.00 0.00 1.40
520 534 8.753497 ACAGTCTAACTTTCCTTCTTGAATTT 57.247 30.769 0.00 0.00 0.00 1.82
521 535 8.753497 AACAGTCTAACTTTCCTTCTTGAATT 57.247 30.769 0.00 0.00 0.00 2.17
522 536 9.495572 CTAACAGTCTAACTTTCCTTCTTGAAT 57.504 33.333 0.00 0.00 0.00 2.57
523 537 7.441458 GCTAACAGTCTAACTTTCCTTCTTGAA 59.559 37.037 0.00 0.00 0.00 2.69
524 538 6.929606 GCTAACAGTCTAACTTTCCTTCTTGA 59.070 38.462 0.00 0.00 0.00 3.02
525 539 6.706270 TGCTAACAGTCTAACTTTCCTTCTTG 59.294 38.462 0.00 0.00 0.00 3.02
526 540 6.827727 TGCTAACAGTCTAACTTTCCTTCTT 58.172 36.000 0.00 0.00 0.00 2.52
527 541 6.267928 TCTGCTAACAGTCTAACTTTCCTTCT 59.732 38.462 0.00 0.00 44.77 2.85
528 542 6.456501 TCTGCTAACAGTCTAACTTTCCTTC 58.543 40.000 0.00 0.00 44.77 3.46
529 543 6.420913 TCTGCTAACAGTCTAACTTTCCTT 57.579 37.500 0.00 0.00 44.77 3.36
530 544 6.613153 ATCTGCTAACAGTCTAACTTTCCT 57.387 37.500 0.00 0.00 44.77 3.36
531 545 6.651225 ACAATCTGCTAACAGTCTAACTTTCC 59.349 38.462 0.00 0.00 44.77 3.13
532 546 7.659652 ACAATCTGCTAACAGTCTAACTTTC 57.340 36.000 0.00 0.00 44.77 2.62
533 547 8.451908 AAACAATCTGCTAACAGTCTAACTTT 57.548 30.769 0.00 0.00 44.77 2.66
534 548 8.989980 GTAAACAATCTGCTAACAGTCTAACTT 58.010 33.333 0.00 0.00 44.77 2.66
535 549 8.368668 AGTAAACAATCTGCTAACAGTCTAACT 58.631 33.333 0.00 0.00 44.77 2.24
536 550 8.436200 CAGTAAACAATCTGCTAACAGTCTAAC 58.564 37.037 0.00 0.00 44.77 2.34
537 551 8.148351 ACAGTAAACAATCTGCTAACAGTCTAA 58.852 33.333 0.00 0.00 44.77 2.10
538 552 7.667557 ACAGTAAACAATCTGCTAACAGTCTA 58.332 34.615 0.00 0.00 44.77 2.59
539 553 6.525629 ACAGTAAACAATCTGCTAACAGTCT 58.474 36.000 0.00 0.00 44.77 3.24
540 554 6.787085 ACAGTAAACAATCTGCTAACAGTC 57.213 37.500 0.00 0.00 44.77 3.51
541 555 6.765989 TCAACAGTAAACAATCTGCTAACAGT 59.234 34.615 0.00 0.00 44.77 3.55
542 556 7.189693 TCAACAGTAAACAATCTGCTAACAG 57.810 36.000 0.00 0.00 45.95 3.16
543 557 7.744087 ATCAACAGTAAACAATCTGCTAACA 57.256 32.000 0.00 0.00 35.37 2.41
677 691 9.866655 TCCATATGATTAAGCCTAAAATCACTT 57.133 29.630 3.65 0.00 43.01 3.16
687 701 9.956640 CTTCTTTCTATCCATATGATTAAGCCT 57.043 33.333 3.65 0.00 34.76 4.58
688 702 9.171877 CCTTCTTTCTATCCATATGATTAAGCC 57.828 37.037 3.65 0.00 34.76 4.35
689 703 9.950496 TCCTTCTTTCTATCCATATGATTAAGC 57.050 33.333 3.65 0.00 34.76 3.09
698 712 8.714906 CCCTAACTTTCCTTCTTTCTATCCATA 58.285 37.037 0.00 0.00 0.00 2.74
699 713 7.184753 ACCCTAACTTTCCTTCTTTCTATCCAT 59.815 37.037 0.00 0.00 0.00 3.41
700 714 6.504279 ACCCTAACTTTCCTTCTTTCTATCCA 59.496 38.462 0.00 0.00 0.00 3.41
701 715 6.959904 ACCCTAACTTTCCTTCTTTCTATCC 58.040 40.000 0.00 0.00 0.00 2.59
702 716 8.760735 AGTACCCTAACTTTCCTTCTTTCTATC 58.239 37.037 0.00 0.00 0.00 2.08
703 717 8.541234 CAGTACCCTAACTTTCCTTCTTTCTAT 58.459 37.037 0.00 0.00 0.00 1.98
704 718 7.511714 ACAGTACCCTAACTTTCCTTCTTTCTA 59.488 37.037 0.00 0.00 0.00 2.10
705 719 6.329460 ACAGTACCCTAACTTTCCTTCTTTCT 59.671 38.462 0.00 0.00 0.00 2.52
706 720 6.531923 ACAGTACCCTAACTTTCCTTCTTTC 58.468 40.000 0.00 0.00 0.00 2.62
707 721 6.511017 ACAGTACCCTAACTTTCCTTCTTT 57.489 37.500 0.00 0.00 0.00 2.52
708 722 7.015064 TCTACAGTACCCTAACTTTCCTTCTT 58.985 38.462 0.00 0.00 0.00 2.52
709 723 6.559429 TCTACAGTACCCTAACTTTCCTTCT 58.441 40.000 0.00 0.00 0.00 2.85
710 724 6.847421 TCTACAGTACCCTAACTTTCCTTC 57.153 41.667 0.00 0.00 0.00 3.46
711 725 7.679025 AGAATCTACAGTACCCTAACTTTCCTT 59.321 37.037 0.00 0.00 0.00 3.36
712 726 7.124448 CAGAATCTACAGTACCCTAACTTTCCT 59.876 40.741 0.00 0.00 0.00 3.36
713 727 7.093421 ACAGAATCTACAGTACCCTAACTTTCC 60.093 40.741 0.00 0.00 0.00 3.13
714 728 7.838884 ACAGAATCTACAGTACCCTAACTTTC 58.161 38.462 0.00 0.00 0.00 2.62
715 729 7.793948 ACAGAATCTACAGTACCCTAACTTT 57.206 36.000 0.00 0.00 0.00 2.66
716 730 8.747471 GTTACAGAATCTACAGTACCCTAACTT 58.253 37.037 0.00 0.00 0.00 2.66
717 731 7.892241 TGTTACAGAATCTACAGTACCCTAACT 59.108 37.037 0.00 0.00 0.00 2.24
718 732 8.059798 TGTTACAGAATCTACAGTACCCTAAC 57.940 38.462 0.00 0.00 0.00 2.34
719 733 8.834004 ATGTTACAGAATCTACAGTACCCTAA 57.166 34.615 0.00 0.00 0.00 2.69
720 734 8.834004 AATGTTACAGAATCTACAGTACCCTA 57.166 34.615 0.00 0.00 0.00 3.53
721 735 7.147707 GGAATGTTACAGAATCTACAGTACCCT 60.148 40.741 0.00 0.00 0.00 4.34
722 736 6.985059 GGAATGTTACAGAATCTACAGTACCC 59.015 42.308 0.00 0.00 0.00 3.69
723 737 7.783042 AGGAATGTTACAGAATCTACAGTACC 58.217 38.462 0.00 0.00 0.00 3.34
724 738 9.088512 CAAGGAATGTTACAGAATCTACAGTAC 57.911 37.037 0.00 0.00 0.00 2.73
725 739 8.812972 ACAAGGAATGTTACAGAATCTACAGTA 58.187 33.333 0.00 0.00 40.06 2.74
726 740 7.604164 CACAAGGAATGTTACAGAATCTACAGT 59.396 37.037 0.00 0.00 41.46 3.55
727 741 7.819415 TCACAAGGAATGTTACAGAATCTACAG 59.181 37.037 0.00 0.00 41.46 2.74
728 742 7.676004 TCACAAGGAATGTTACAGAATCTACA 58.324 34.615 0.00 0.00 41.46 2.74
729 743 8.547967 TTCACAAGGAATGTTACAGAATCTAC 57.452 34.615 0.00 0.00 41.46 2.59
744 758 4.513442 CGGATCCTAACATTCACAAGGAA 58.487 43.478 10.75 0.00 41.33 3.36
745 759 3.118408 CCGGATCCTAACATTCACAAGGA 60.118 47.826 10.75 0.00 42.17 3.36
746 760 3.206150 CCGGATCCTAACATTCACAAGG 58.794 50.000 10.75 0.00 0.00 3.61
747 761 3.873910 ACCGGATCCTAACATTCACAAG 58.126 45.455 9.46 0.00 0.00 3.16
748 762 3.992943 ACCGGATCCTAACATTCACAA 57.007 42.857 9.46 0.00 0.00 3.33
749 763 3.370103 GGAACCGGATCCTAACATTCACA 60.370 47.826 22.87 0.00 36.50 3.58
750 764 3.203716 GGAACCGGATCCTAACATTCAC 58.796 50.000 22.87 0.00 36.50 3.18
751 765 2.171870 GGGAACCGGATCCTAACATTCA 59.828 50.000 27.91 0.00 40.86 2.57
752 766 2.847441 GGGAACCGGATCCTAACATTC 58.153 52.381 27.91 8.76 40.86 2.67
766 780 3.070576 GGCATGCCACAGGGAACC 61.071 66.667 32.08 0.00 42.86 3.62
767 781 3.443045 CGGCATGCCACAGGGAAC 61.443 66.667 34.93 6.13 35.59 3.62
768 782 3.965258 ACGGCATGCCACAGGGAA 61.965 61.111 34.93 0.00 35.59 3.97
769 783 4.720902 CACGGCATGCCACAGGGA 62.721 66.667 34.93 0.00 35.59 4.20
771 785 3.434319 GACACGGCATGCCACAGG 61.434 66.667 34.93 21.34 35.37 4.00
804 818 4.506255 CGGGATGGGAAGGTGGGC 62.506 72.222 0.00 0.00 0.00 5.36
940 958 1.159285 CACACACACTGGCCACTATG 58.841 55.000 0.00 2.89 0.00 2.23
1016 1037 2.915604 AGGAGGAGGAAGAAGATGCAAA 59.084 45.455 0.00 0.00 0.00 3.68
1062 1083 2.245546 TGATCAGCAGGATTTGGGGATT 59.754 45.455 0.00 0.00 36.00 3.01
1105 1126 6.489675 GCTTTGATGTGTTATGTATGACCTG 58.510 40.000 0.00 0.00 0.00 4.00
1106 1127 5.294306 CGCTTTGATGTGTTATGTATGACCT 59.706 40.000 0.00 0.00 0.00 3.85
1108 1129 6.106877 ACGCTTTGATGTGTTATGTATGAC 57.893 37.500 0.00 0.00 0.00 3.06
1109 1130 6.370166 TCAACGCTTTGATGTGTTATGTATGA 59.630 34.615 0.75 0.00 38.42 2.15
1110 1131 6.465781 GTCAACGCTTTGATGTGTTATGTATG 59.534 38.462 9.04 0.00 43.72 2.39
1111 1132 6.542852 GTCAACGCTTTGATGTGTTATGTAT 58.457 36.000 9.04 0.00 43.72 2.29
1112 1133 5.388994 CGTCAACGCTTTGATGTGTTATGTA 60.389 40.000 15.18 0.00 43.72 2.29
1113 1134 4.610456 CGTCAACGCTTTGATGTGTTATGT 60.610 41.667 15.18 0.00 43.72 2.29
1114 1135 3.840209 CGTCAACGCTTTGATGTGTTATG 59.160 43.478 15.18 0.00 43.72 1.90
1761 1823 6.687081 TTGTTTAGGGATAACCAATTAGCG 57.313 37.500 0.00 0.00 43.89 4.26
1916 2161 4.982295 GGGAACAACACATTTGAGTTTAGC 59.018 41.667 0.00 0.00 0.00 3.09
2057 2302 7.995289 TGCATTTCAACAACATATTAGGTAGG 58.005 34.615 0.00 0.00 0.00 3.18
2074 2319 9.999660 ATGCCATTTTTACATATATGCATTTCA 57.000 25.926 12.79 0.00 0.00 2.69
2242 2487 1.809547 TGCAATCAATACCACACCACG 59.190 47.619 0.00 0.00 0.00 4.94
2290 2535 3.521560 CATGCGCTCTAGGTCAACTTTA 58.478 45.455 9.73 0.00 0.00 1.85
2881 3357 7.657761 GTCCACCAGATGAATCTACGAAAATAT 59.342 37.037 0.00 0.00 34.85 1.28
2883 3359 5.817816 GTCCACCAGATGAATCTACGAAAAT 59.182 40.000 0.00 0.00 34.85 1.82
2916 4100 2.693074 TGATTATCTGGTAGCGCTCACA 59.307 45.455 16.34 13.96 0.00 3.58
3068 4252 2.014857 GCTCGGGTTTGGTCTTTATCC 58.985 52.381 0.00 0.00 0.00 2.59
3280 4504 5.450453 CCCTTCTCTCCTGTTAGTATCTCA 58.550 45.833 0.00 0.00 0.00 3.27
3436 5252 6.705863 AGGCCAAGAAAGCATTTAGAATAG 57.294 37.500 5.01 0.00 39.27 1.73
3473 5402 1.378531 GGTGCTACAAATGCGATCCA 58.621 50.000 0.00 0.00 0.00 3.41
3558 5488 4.219033 GGACAAAAGTTGACACATAAGCG 58.781 43.478 0.00 0.00 0.00 4.68
3577 5548 0.323087 GGGGTTACACATGTGGGGAC 60.323 60.000 28.64 21.35 34.19 4.46
3624 5595 5.723887 AGGTATGGAGTTCAAGAATCTCAGT 59.276 40.000 11.62 5.29 0.00 3.41
3629 5600 6.238593 GCAATGAGGTATGGAGTTCAAGAATC 60.239 42.308 0.00 0.00 0.00 2.52
3739 5711 0.988832 TCTTCGTGGGTTTGGGCTAT 59.011 50.000 0.00 0.00 0.00 2.97
3851 5823 6.706270 CCGATGATAGGTGTTTTGTAGCTAAT 59.294 38.462 0.00 0.00 32.55 1.73
3852 5824 6.046593 CCGATGATAGGTGTTTTGTAGCTAA 58.953 40.000 0.00 0.00 32.55 3.09
3859 5831 5.880054 AAACTCCGATGATAGGTGTTTTG 57.120 39.130 15.75 0.00 46.77 2.44
3908 5880 9.137459 TCCAATTTTCAACTACCTACAAAATCA 57.863 29.630 0.00 0.00 0.00 2.57
3958 5930 5.486735 TGTTCCAATTGCATCTCCAAATT 57.513 34.783 0.00 0.00 0.00 1.82
4011 5983 2.754946 TCGGGTTCAAGTCCATACAC 57.245 50.000 0.00 0.00 0.00 2.90
4113 6085 4.643334 AGGAAACTAACCTGTTGTTTGACC 59.357 41.667 12.18 9.47 40.61 4.02
4209 6202 4.495422 TCACGAGTTCATCTCTTTTAGCC 58.505 43.478 0.00 0.00 40.75 3.93
4335 6330 6.245408 AGAAATACTTGCACCTTGTGGAATA 58.755 36.000 1.62 0.00 42.44 1.75
4362 6357 3.580895 TGTAGAGCACACCATGGTTAGAA 59.419 43.478 16.84 0.00 39.82 2.10
4420 6415 4.453136 GCCCAACTTCACGTAATTCTTACA 59.547 41.667 0.00 0.00 35.89 2.41
4422 6417 3.680937 CGCCCAACTTCACGTAATTCTTA 59.319 43.478 0.00 0.00 0.00 2.10
4737 6735 8.049117 TGAAGAATATCATGAAGGCTAACTGTT 58.951 33.333 0.00 0.00 0.00 3.16
5091 7107 3.198409 TGGTCAGCATGTATAGCCTTG 57.802 47.619 0.00 0.00 37.40 3.61
5129 7145 4.629200 CCTTCTTGTGATTCTCGAGGAAAG 59.371 45.833 13.56 4.50 37.49 2.62
5262 7278 3.795623 TCTACCATTGACGGTCTTAGC 57.204 47.619 9.88 0.00 40.67 3.09
5287 7303 6.260936 CGATCCAGTATAGAAAGGCATTTTGT 59.739 38.462 0.00 0.00 0.00 2.83
5293 7309 4.220821 GGATCGATCCAGTATAGAAAGGCA 59.779 45.833 34.65 0.00 46.38 4.75
5520 7537 6.445451 AGGGACTACATACGGAGTAGAATA 57.555 41.667 15.20 0.00 43.19 1.75
5533 7550 4.031611 GAGGTTCCTACAAGGGACTACAT 58.968 47.826 4.41 0.00 43.73 2.29
5552 7569 8.880750 CCGTCCTAAATAAAGTCTTTTTAGAGG 58.119 37.037 14.47 11.52 35.79 3.69
5641 7659 5.689383 AGAATGCAAATCTTACACGTGTT 57.311 34.783 28.55 11.17 0.00 3.32
5643 7661 9.935682 ATTATAAGAATGCAAATCTTACACGTG 57.064 29.630 21.05 15.48 40.97 4.49
5792 7812 0.661187 GCCTGTGCACAATTCACACG 60.661 55.000 21.98 6.23 39.29 4.49
5799 7819 1.242076 GACTTGAGCCTGTGCACAAT 58.758 50.000 21.98 9.83 45.08 2.71
6063 8083 1.369209 CACGCCGCAAGACAAACAG 60.369 57.895 0.00 0.00 43.02 3.16
6099 8119 2.710377 AGACAAACAAGCCGCATGATA 58.290 42.857 1.93 0.00 0.00 2.15
6204 8224 5.957842 TCAAACATTTATGGCGTCTTTCT 57.042 34.783 0.00 0.00 0.00 2.52
6267 8287 4.319477 GCAATGCTCGTTTCAGACTTACAA 60.319 41.667 0.00 0.00 0.00 2.41
6401 8421 2.027625 CCGCAACTCCGTCCTTGAC 61.028 63.158 0.00 0.00 0.00 3.18
6408 8428 4.379243 CCTGCTCCGCAACTCCGT 62.379 66.667 0.00 0.00 38.41 4.69
6426 8446 3.188786 CTGCTAGAACACGGCGCC 61.189 66.667 19.07 19.07 0.00 6.53
6433 8453 0.386858 GCGACACGTCTGCTAGAACA 60.387 55.000 0.00 0.00 0.00 3.18
6436 8456 0.109735 CAAGCGACACGTCTGCTAGA 60.110 55.000 13.97 0.00 38.06 2.43
6438 8458 0.312729 TTCAAGCGACACGTCTGCTA 59.687 50.000 13.97 1.52 38.06 3.49
6444 8464 2.993899 CCTTCTAATTCAAGCGACACGT 59.006 45.455 0.00 0.00 0.00 4.49
6462 8482 1.831652 CTTCAGTGCCGGTCTCCCTT 61.832 60.000 1.90 0.00 0.00 3.95
6463 8483 2.203788 TTCAGTGCCGGTCTCCCT 60.204 61.111 1.90 0.00 0.00 4.20
6464 8484 1.255667 TACTTCAGTGCCGGTCTCCC 61.256 60.000 1.90 0.00 0.00 4.30
6465 8485 0.606604 TTACTTCAGTGCCGGTCTCC 59.393 55.000 1.90 0.00 0.00 3.71
6469 8489 0.034896 CACCTTACTTCAGTGCCGGT 59.965 55.000 1.90 0.00 0.00 5.28
6480 8500 0.109597 CGCGACGGTAACACCTTACT 60.110 55.000 0.00 0.00 35.66 2.24
6520 8540 0.250770 ACGGCTTCCTTTCCAACTCC 60.251 55.000 0.00 0.00 0.00 3.85
6559 8579 3.679824 AGATATTGTAGGTTAGCCGCC 57.320 47.619 0.00 0.00 40.50 6.13
6594 8614 0.251165 CCGTTGTTGGGGAAGATGGT 60.251 55.000 0.00 0.00 0.00 3.55
6960 9047 9.072294 AGCAATACACGAATAATAAGCAAAAAC 57.928 29.630 0.00 0.00 0.00 2.43
6963 9050 9.877137 CATAGCAATACACGAATAATAAGCAAA 57.123 29.630 0.00 0.00 0.00 3.68
6964 9051 8.503196 CCATAGCAATACACGAATAATAAGCAA 58.497 33.333 0.00 0.00 0.00 3.91
6965 9052 7.119116 CCCATAGCAATACACGAATAATAAGCA 59.881 37.037 0.00 0.00 0.00 3.91
6966 9053 7.119262 ACCCATAGCAATACACGAATAATAAGC 59.881 37.037 0.00 0.00 0.00 3.09
6967 9054 8.547967 ACCCATAGCAATACACGAATAATAAG 57.452 34.615 0.00 0.00 0.00 1.73
6968 9055 8.779303 CAACCCATAGCAATACACGAATAATAA 58.221 33.333 0.00 0.00 0.00 1.40
6976 9063 4.695217 AAACAACCCATAGCAATACACG 57.305 40.909 0.00 0.00 0.00 4.49
6980 9067 5.736951 AGCAAAAACAACCCATAGCAATA 57.263 34.783 0.00 0.00 0.00 1.90
7086 9173 2.596346 AGTTGCATGTCCATGGTTTGA 58.404 42.857 12.58 0.00 39.16 2.69
7199 9286 5.601662 CATGTCTACGGTTCCATGAACTAT 58.398 41.667 6.89 0.00 41.70 2.12
7267 9354 8.715191 TTTTCTTGCACTAAATTTTGTGATGT 57.285 26.923 29.06 4.46 36.27 3.06
7314 9401 4.502105 AATGGGGCCCAATAAAATGTTC 57.498 40.909 32.57 0.98 36.95 3.18
7376 9463 3.260100 CCCAAGACCAGCCCACCT 61.260 66.667 0.00 0.00 0.00 4.00
7421 9508 2.806745 CGAATAGATGTTGGGCCGTGAT 60.807 50.000 0.00 0.00 0.00 3.06
7493 9584 8.519799 TCCTCTGTTTTTGTTCTTCAGTTAAT 57.480 30.769 0.00 0.00 0.00 1.40
7524 9615 2.290641 GGCCCTATTCAGTGTTAATGCG 59.709 50.000 0.00 0.00 0.00 4.73
7529 9620 1.843851 CAGGGGCCCTATTCAGTGTTA 59.156 52.381 28.28 0.00 29.64 2.41
7719 9810 6.751514 TTTTATGGTTGTGTCATCGCTATT 57.248 33.333 0.00 0.00 0.00 1.73
7725 9816 5.105797 TGGAGCATTTTATGGTTGTGTCATC 60.106 40.000 0.00 0.00 41.77 2.92
7787 9878 5.917462 AGAAAATTGGCAAGCAACTAAAGT 58.083 33.333 5.96 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.