Multiple sequence alignment - TraesCS6A01G035900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G035900 chr6A 100.000 5476 0 0 1 5476 17659076 17653601 0.000000e+00 10113
1 TraesCS6A01G035900 chr6A 81.724 4536 576 130 473 4901 17646234 17650623 0.000000e+00 3550
2 TraesCS6A01G035900 chr6A 97.281 331 9 0 5146 5476 136992738 136993068 3.700000e-156 562
3 TraesCS6A01G035900 chr6D 87.776 4393 432 46 725 5093 16966002 16961691 0.000000e+00 5040
4 TraesCS6A01G035900 chr6D 84.327 4160 496 97 781 4866 16940394 16944471 0.000000e+00 3927
5 TraesCS6A01G035900 chr6D 85.300 517 35 14 220 712 16966541 16966042 3.810000e-136 496
6 TraesCS6A01G035900 chr6D 91.096 292 15 6 9 296 16971082 16970798 8.600000e-103 385
7 TraesCS6A01G035900 chr6D 91.975 162 13 0 7 168 16966680 16966519 1.530000e-55 228
8 TraesCS6A01G035900 chr6D 83.468 248 20 9 473 714 16939784 16940016 1.550000e-50 211
9 TraesCS6A01G035900 chr6B 91.472 3553 214 38 148 3650 29932943 29929430 0.000000e+00 4800
10 TraesCS6A01G035900 chr6B 81.744 4519 573 145 473 4866 29855965 29860356 0.000000e+00 3542
11 TraesCS6A01G035900 chr6B 91.679 2019 146 10 3079 5093 29969785 29967785 0.000000e+00 2778
12 TraesCS6A01G035900 chr6B 85.019 2056 267 20 2267 4309 29927412 29929439 0.000000e+00 2052
13 TraesCS6A01G035900 chr6B 80.128 1560 196 61 729 2211 29920331 29921853 0.000000e+00 1059
14 TraesCS6A01G035900 chr6B 89.614 751 71 3 1844 2594 29983788 29983045 0.000000e+00 948
15 TraesCS6A01G035900 chr6B 88.907 604 64 2 1248 1848 29989669 29989066 0.000000e+00 741
16 TraesCS6A01G035900 chr6B 96.056 355 13 1 2739 3093 29974320 29973967 1.320000e-160 577
17 TraesCS6A01G035900 chr6B 89.409 406 26 4 771 1175 29946930 29946541 3.810000e-136 496
18 TraesCS6A01G035900 chr6B 87.399 373 29 9 332 696 29990549 29990187 3.950000e-111 412
19 TraesCS6A01G035900 chr6B 88.176 296 26 6 416 706 29948741 29948450 1.460000e-90 344
20 TraesCS6A01G035900 chr6B 89.381 226 24 0 9 234 29992250 29992025 8.980000e-73 285
21 TraesCS6A01G035900 chr6B 95.041 121 6 0 2628 2748 29983046 29982926 2.010000e-44 191
22 TraesCS6A01G035900 chr2A 74.207 1733 376 52 2817 4504 17598979 17597273 0.000000e+00 658
23 TraesCS6A01G035900 chr2A 73.509 1710 393 48 2817 4491 17503394 17501710 1.310000e-165 593
24 TraesCS6A01G035900 chr2A 97.576 330 8 0 5147 5476 750836013 750835684 2.860000e-157 566
25 TraesCS6A01G035900 chr2A 97.264 329 9 0 5148 5476 408798039 408797711 4.790000e-155 558
26 TraesCS6A01G035900 chr2A 83.301 509 85 0 1247 1755 17600582 17600074 2.310000e-128 470
27 TraesCS6A01G035900 chr4A 97.872 329 7 0 5148 5476 42711039 42710711 2.210000e-158 569
28 TraesCS6A01G035900 chr7A 97.568 329 8 0 5148 5476 451473954 451473626 1.030000e-156 564
29 TraesCS6A01G035900 chr7A 97.281 331 9 0 5146 5476 575231672 575232002 3.700000e-156 562
30 TraesCS6A01G035900 chr7A 96.736 337 10 1 5140 5476 434872766 434872431 1.330000e-155 560
31 TraesCS6A01G035900 chr1A 97.568 329 8 0 5148 5476 94004315 94003987 1.030000e-156 564
32 TraesCS6A01G035900 chr2B 97.264 329 9 0 5148 5476 226019354 226019682 4.790000e-155 558
33 TraesCS6A01G035900 chr2D 73.945 1516 329 48 2812 4286 15472524 15471034 8.020000e-153 551
34 TraesCS6A01G035900 chr2D 73.711 1552 342 48 2817 4326 15506825 15505298 3.730000e-151 545
35 TraesCS6A01G035900 chr2D 81.209 612 98 14 1151 1756 15518378 15517778 1.380000e-130 477
36 TraesCS6A01G035900 chr2D 81.349 504 92 2 1248 1750 15508209 15507707 5.110000e-110 409
37 TraesCS6A01G035900 chr3A 94.186 344 18 2 5134 5476 251185844 251186186 1.750000e-144 523
38 TraesCS6A01G035900 chr3A 100.000 55 0 0 5092 5146 650053683 650053737 9.700000e-18 102
39 TraesCS6A01G035900 chr4D 93.696 349 18 3 5129 5475 112874904 112874558 2.260000e-143 520
40 TraesCS6A01G035900 chr4D 98.276 58 1 0 5089 5146 125078524 125078581 9.700000e-18 102
41 TraesCS6A01G035900 chr7B 92.241 348 26 1 5130 5476 72482991 72483338 4.930000e-135 492
42 TraesCS6A01G035900 chr7B 98.246 57 1 0 5091 5147 729729723 729729779 3.490000e-17 100
43 TraesCS6A01G035900 chr7B 98.246 57 1 0 5091 5147 729964993 729965049 3.490000e-17 100
44 TraesCS6A01G035900 chr5D 91.040 346 26 4 5134 5476 434279205 434279548 3.860000e-126 462
45 TraesCS6A01G035900 chr5D 93.214 280 16 3 5132 5411 201586993 201586717 5.110000e-110 409
46 TraesCS6A01G035900 chr5D 96.667 60 2 0 5087 5146 558898409 558898468 3.490000e-17 100
47 TraesCS6A01G035900 chr5B 81.006 358 44 14 5125 5465 174876311 174876661 4.210000e-66 263
48 TraesCS6A01G035900 chr7D 95.312 64 2 1 5081 5143 20148015 20148078 3.490000e-17 100
49 TraesCS6A01G035900 chr7D 95.312 64 2 1 5081 5143 20161795 20161858 3.490000e-17 100
50 TraesCS6A01G035900 chr7D 95.312 64 2 1 5081 5143 20201340 20201403 3.490000e-17 100
51 TraesCS6A01G035900 chrUn 95.161 62 3 0 5085 5146 287282325 287282264 1.260000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G035900 chr6A 17653601 17659076 5475 True 10113.000000 10113 100.000000 1 5476 1 chr6A.!!$R1 5475
1 TraesCS6A01G035900 chr6A 17646234 17650623 4389 False 3550.000000 3550 81.724000 473 4901 1 chr6A.!!$F1 4428
2 TraesCS6A01G035900 chr6D 16939784 16944471 4687 False 2069.000000 3927 83.897500 473 4866 2 chr6D.!!$F1 4393
3 TraesCS6A01G035900 chr6D 16961691 16966680 4989 True 1921.333333 5040 88.350333 7 5093 3 chr6D.!!$R2 5086
4 TraesCS6A01G035900 chr6B 29929430 29932943 3513 True 4800.000000 4800 91.472000 148 3650 1 chr6B.!!$R1 3502
5 TraesCS6A01G035900 chr6B 29855965 29860356 4391 False 3542.000000 3542 81.744000 473 4866 1 chr6B.!!$F1 4393
6 TraesCS6A01G035900 chr6B 29967785 29969785 2000 True 2778.000000 2778 91.679000 3079 5093 1 chr6B.!!$R2 2014
7 TraesCS6A01G035900 chr6B 29927412 29929439 2027 False 2052.000000 2052 85.019000 2267 4309 1 chr6B.!!$F3 2042
8 TraesCS6A01G035900 chr6B 29920331 29921853 1522 False 1059.000000 1059 80.128000 729 2211 1 chr6B.!!$F2 1482
9 TraesCS6A01G035900 chr6B 29982926 29983788 862 True 569.500000 948 92.327500 1844 2748 2 chr6B.!!$R5 904
10 TraesCS6A01G035900 chr6B 29989066 29992250 3184 True 479.333333 741 88.562333 9 1848 3 chr6B.!!$R6 1839
11 TraesCS6A01G035900 chr6B 29946541 29948741 2200 True 420.000000 496 88.792500 416 1175 2 chr6B.!!$R4 759
12 TraesCS6A01G035900 chr2A 17501710 17503394 1684 True 593.000000 593 73.509000 2817 4491 1 chr2A.!!$R1 1674
13 TraesCS6A01G035900 chr2A 17597273 17600582 3309 True 564.000000 658 78.754000 1247 4504 2 chr2A.!!$R4 3257
14 TraesCS6A01G035900 chr2D 15471034 15472524 1490 True 551.000000 551 73.945000 2812 4286 1 chr2D.!!$R1 1474
15 TraesCS6A01G035900 chr2D 15505298 15508209 2911 True 477.000000 545 77.530000 1248 4326 2 chr2D.!!$R3 3078
16 TraesCS6A01G035900 chr2D 15517778 15518378 600 True 477.000000 477 81.209000 1151 1756 1 chr2D.!!$R2 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 1.340502 TGCTTTCCAGTGGTGTTGTCA 60.341 47.619 9.54 0.00 0.0 3.58 F
176 177 2.288666 ACCGGCATGCTGTTAACTATG 58.711 47.619 24.56 9.44 0.0 2.23 F
2157 5648 0.607217 CAGTGCAGGCTTCATGACCA 60.607 55.000 0.00 0.00 0.0 4.02 F
2454 5957 1.547372 GCATCCAAGCCACAATGAAGT 59.453 47.619 0.00 0.00 0.0 3.01 F
3910 7477 0.319211 TACACGTGCTTCCCTTGTCG 60.319 55.000 17.22 0.00 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1244 4651 3.877559 TGATCTCCTGCGATGTTCAATT 58.122 40.909 0.00 0.00 0.00 2.32 R
2265 5765 3.096852 TCTGGTAATGTCGTCATCTGGT 58.903 45.455 0.00 0.00 32.56 4.00 R
3447 6996 0.109342 AGGAATAGCTGGGCAATCCG 59.891 55.000 0.00 0.00 38.76 4.18 R
4169 7742 0.610174 TCCACACTAGGCAGCTTCTG 59.390 55.000 0.00 0.00 34.12 3.02 R
5239 8871 0.034756 TCCAAGCTGAGCACGCTTAA 59.965 50.000 7.39 3.27 45.27 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.395639 TCATCAAAGCGTTACTTTCCGT 58.604 40.909 0.00 0.00 45.78 4.69
94 95 2.942710 GTCTGACGGACGATTTCTTGA 58.057 47.619 0.00 0.00 35.07 3.02
119 120 1.340502 TGCTTTCCAGTGGTGTTGTCA 60.341 47.619 9.54 0.00 0.00 3.58
142 143 5.930209 TTAGGAAGGCCAATCAGGATAAT 57.070 39.130 5.01 0.00 41.22 1.28
143 144 4.109877 AGGAAGGCCAATCAGGATAATG 57.890 45.455 5.01 0.00 41.22 1.90
144 145 2.560105 GGAAGGCCAATCAGGATAATGC 59.440 50.000 5.01 0.00 41.22 3.56
145 146 3.494332 GAAGGCCAATCAGGATAATGCT 58.506 45.455 5.01 0.00 41.22 3.79
146 147 2.872732 AGGCCAATCAGGATAATGCTG 58.127 47.619 5.01 0.00 41.22 4.41
152 153 4.694509 CCAATCAGGATAATGCTGCTAGAC 59.305 45.833 0.00 0.00 41.22 2.59
154 155 4.862902 TCAGGATAATGCTGCTAGACTC 57.137 45.455 0.00 0.00 35.65 3.36
174 175 2.761767 TCTACCGGCATGCTGTTAACTA 59.238 45.455 24.56 1.43 0.00 2.24
175 176 2.710096 ACCGGCATGCTGTTAACTAT 57.290 45.000 24.56 0.00 0.00 2.12
176 177 2.288666 ACCGGCATGCTGTTAACTATG 58.711 47.619 24.56 9.44 0.00 2.23
185 186 6.418819 GCATGCTGTTAACTATGGCAATTAAG 59.581 38.462 11.37 0.00 36.49 1.85
198 199 5.448654 TGGCAATTAAGAGGATAATGCTGT 58.551 37.500 0.00 0.00 0.00 4.40
202 203 7.862873 GGCAATTAAGAGGATAATGCTGTTAAC 59.137 37.037 0.00 0.00 36.64 2.01
234 235 4.999311 GGGACTGTTGTTAGATTTTACCGT 59.001 41.667 0.00 0.00 0.00 4.83
283 1787 3.056107 GTCTTGTACTAGGCATCCACACA 60.056 47.826 3.95 0.00 0.00 3.72
287 1791 3.711190 TGTACTAGGCATCCACACATCAT 59.289 43.478 0.00 0.00 0.00 2.45
296 1800 4.740268 CATCCACACATCATTTTGACTGG 58.260 43.478 0.00 0.00 0.00 4.00
297 1801 3.831323 TCCACACATCATTTTGACTGGT 58.169 40.909 0.00 0.00 0.00 4.00
298 1802 4.979335 TCCACACATCATTTTGACTGGTA 58.021 39.130 0.00 0.00 0.00 3.25
299 1803 5.380900 TCCACACATCATTTTGACTGGTAA 58.619 37.500 0.00 0.00 0.00 2.85
426 1948 3.963129 CCTTTACAAGGGAATGGTAGCA 58.037 45.455 0.00 0.00 45.27 3.49
436 1958 6.305272 AGGGAATGGTAGCATCATACATAG 57.695 41.667 8.07 0.00 0.00 2.23
450 1972 7.445402 GCATCATACATAGGTTGGTCAACTAAT 59.555 37.037 12.75 5.13 40.94 1.73
451 1973 9.342308 CATCATACATAGGTTGGTCAACTAATT 57.658 33.333 12.75 0.00 40.94 1.40
455 1977 9.847224 ATACATAGGTTGGTCAACTAATTAAGG 57.153 33.333 12.75 0.55 40.94 2.69
456 1978 7.924541 ACATAGGTTGGTCAACTAATTAAGGA 58.075 34.615 12.75 0.00 40.94 3.36
460 1982 8.388656 AGGTTGGTCAACTAATTAAGGAGATA 57.611 34.615 12.75 0.00 40.94 1.98
492 2014 2.929398 CAACAAAGCAAACAACCCAGAC 59.071 45.455 0.00 0.00 0.00 3.51
497 2019 5.830991 ACAAAGCAAACAACCCAGACTTATA 59.169 36.000 0.00 0.00 0.00 0.98
560 2090 5.486735 AGAATCTGATGATGGATCCTGAC 57.513 43.478 14.23 4.95 32.44 3.51
561 2091 4.906060 AGAATCTGATGATGGATCCTGACA 59.094 41.667 14.23 10.58 32.44 3.58
1219 4626 9.931210 AAGAAACAAGACTAAAGTGATAAAACG 57.069 29.630 0.00 0.00 0.00 3.60
1228 4635 9.113876 GACTAAAGTGATAAAACGACATTTTGG 57.886 33.333 0.00 0.00 40.80 3.28
1281 4689 9.727627 GCAGGAGATCAATATTCAAGTAAAAAG 57.272 33.333 0.00 0.00 0.00 2.27
1772 5185 7.316544 AGGTTTCAATCCAAATACATACGTC 57.683 36.000 0.00 0.00 0.00 4.34
2157 5648 0.607217 CAGTGCAGGCTTCATGACCA 60.607 55.000 0.00 0.00 0.00 4.02
2296 5796 4.756642 ACGACATTACCAGATGGCATATTG 59.243 41.667 0.00 1.95 34.60 1.90
2407 5907 2.159114 GCTAAGACTCCTCCAGCTGAAG 60.159 54.545 17.39 3.25 31.38 3.02
2428 5928 5.378230 AGAACTGCAGAAATATCCCATCA 57.622 39.130 23.35 0.00 0.00 3.07
2454 5957 1.547372 GCATCCAAGCCACAATGAAGT 59.453 47.619 0.00 0.00 0.00 3.01
2455 5958 2.673043 GCATCCAAGCCACAATGAAGTG 60.673 50.000 0.00 0.00 39.21 3.16
2671 6200 2.951229 ACTTACCAACCAAGGACCAG 57.049 50.000 0.00 0.00 0.00 4.00
2790 6319 3.668447 TGCTTGAGTCATTCACCTTCTC 58.332 45.455 0.00 0.00 34.94 2.87
2816 6348 6.303496 GCGTGATTCTTATACTCATGACTACG 59.697 42.308 0.00 0.00 0.00 3.51
2818 6350 6.583050 GTGATTCTTATACTCATGACTACGCC 59.417 42.308 0.00 0.00 0.00 5.68
3047 6579 6.800072 AAATGACAAAGGTTTTGGAGGTAA 57.200 33.333 6.51 0.00 0.00 2.85
3106 6638 5.852827 CAAGCTAATTGGGAAGAAAAACCA 58.147 37.500 0.00 0.00 35.08 3.67
3258 6793 5.294060 GGTCGCTTGAACCGGTTAAATATAA 59.706 40.000 22.33 7.96 0.00 0.98
3312 6850 4.290093 TCATCTCCTACAAGTGGTGCTAT 58.710 43.478 0.00 0.00 0.00 2.97
3317 6855 3.772572 TCCTACAAGTGGTGCTATTGCTA 59.227 43.478 0.00 0.00 40.48 3.49
3357 6895 2.379972 AGGAATCCGGAGTCTGTGTAG 58.620 52.381 29.13 0.00 0.00 2.74
3367 6906 3.068873 GGAGTCTGTGTAGGCCTGATAAG 59.931 52.174 17.99 8.28 0.00 1.73
3384 6929 9.178758 GCCTGATAAGTATTTATATTCAAGGGG 57.821 37.037 0.00 0.00 29.67 4.79
3399 6944 9.942526 ATATTCAAGGGGTATCTTCTTTCAATT 57.057 29.630 0.00 0.00 0.00 2.32
3401 6946 6.789268 TCAAGGGGTATCTTCTTTCAATTCA 58.211 36.000 0.00 0.00 0.00 2.57
3405 6950 5.714806 GGGGTATCTTCTTTCAATTCAACCA 59.285 40.000 0.00 0.00 0.00 3.67
3408 6953 4.488126 TCTTCTTTCAATTCAACCAGCG 57.512 40.909 0.00 0.00 0.00 5.18
3447 6996 0.737219 GGTGCAATCAGCTGGATGTC 59.263 55.000 15.13 9.78 45.94 3.06
3475 7024 2.771943 CCCAGCTATTCCTACTCCAACA 59.228 50.000 0.00 0.00 0.00 3.33
3553 7105 2.285950 GCAGCAACAACAAAGCAACATG 60.286 45.455 0.00 0.00 0.00 3.21
3577 7129 7.272978 TGGAAGGAATTAATACTAGTGCTGAC 58.727 38.462 5.39 0.00 0.00 3.51
3584 7136 8.644318 AATTAATACTAGTGCTGACTTAACCG 57.356 34.615 5.39 0.00 33.21 4.44
3587 7139 2.299297 ACTAGTGCTGACTTAACCGCTT 59.701 45.455 0.00 0.00 33.21 4.68
3603 7155 5.116069 ACCGCTTGTTTGGTATTTAACAG 57.884 39.130 0.00 0.00 36.50 3.16
3691 7249 0.329596 GGAGGAGCCTTGAATGGTGT 59.670 55.000 0.00 0.00 0.00 4.16
3739 7297 1.000955 ACTGTCTTTCGTACTGCCCAG 59.999 52.381 0.00 0.00 0.00 4.45
3910 7477 0.319211 TACACGTGCTTCCCTTGTCG 60.319 55.000 17.22 0.00 0.00 4.35
3937 7504 0.476338 TGGACACTTTGCCTTGCCTA 59.524 50.000 0.00 0.00 0.00 3.93
4169 7742 1.282875 GCTGTCAGCGGAAACAACC 59.717 57.895 9.53 0.00 0.00 3.77
4221 7794 4.569865 GGAATGGTGGGATAACCTTGAGTT 60.570 45.833 0.00 0.00 41.16 3.01
4340 7919 7.397476 GGTAAGATACATATGGTCCATCTCTCA 59.603 40.741 7.92 0.00 0.00 3.27
4491 8088 3.891049 AGGTAATCAGTTCCTTCCATGC 58.109 45.455 0.00 0.00 0.00 4.06
4606 8208 7.841282 TCCCTATTTCATGTTGTTTTGGTTA 57.159 32.000 0.00 0.00 0.00 2.85
4610 8212 9.541143 CCTATTTCATGTTGTTTTGGTTAGTTT 57.459 29.630 0.00 0.00 0.00 2.66
4612 8214 7.602517 TTTCATGTTGTTTTGGTTAGTTTGG 57.397 32.000 0.00 0.00 0.00 3.28
4613 8215 6.287589 TCATGTTGTTTTGGTTAGTTTGGT 57.712 33.333 0.00 0.00 0.00 3.67
4614 8216 6.702329 TCATGTTGTTTTGGTTAGTTTGGTT 58.298 32.000 0.00 0.00 0.00 3.67
4754 8377 1.271934 GTCAGCTCTGCTCAACTGAGA 59.728 52.381 10.95 0.00 44.82 3.27
4901 8533 2.630158 CTGCTCAAGCTGCTTAGATGT 58.370 47.619 15.51 0.00 42.66 3.06
4922 8554 0.889186 GTGGTGTGGTGTGTGGGATC 60.889 60.000 0.00 0.00 0.00 3.36
4979 8611 3.384146 TGCTGTGGTGTGTGATTTTTCAT 59.616 39.130 0.00 0.00 0.00 2.57
5088 8720 4.584325 GCTTGATTAAGGTCCCATATGCAA 59.416 41.667 0.00 0.00 34.40 4.08
5093 8725 6.714810 TGATTAAGGTCCCATATGCAACATAC 59.285 38.462 0.00 0.00 0.00 2.39
5094 8726 4.796110 AAGGTCCCATATGCAACATACT 57.204 40.909 0.00 0.00 0.00 2.12
5095 8727 4.357918 AGGTCCCATATGCAACATACTC 57.642 45.455 0.00 0.00 0.00 2.59
5096 8728 3.073062 AGGTCCCATATGCAACATACTCC 59.927 47.826 0.00 0.00 0.00 3.85
5097 8729 3.412386 GTCCCATATGCAACATACTCCC 58.588 50.000 0.00 0.00 0.00 4.30
5098 8730 3.073062 GTCCCATATGCAACATACTCCCT 59.927 47.826 0.00 0.00 0.00 4.20
5099 8731 3.327757 TCCCATATGCAACATACTCCCTC 59.672 47.826 0.00 0.00 0.00 4.30
5100 8732 3.560025 CCCATATGCAACATACTCCCTCC 60.560 52.174 0.00 0.00 0.00 4.30
5101 8733 3.329386 CATATGCAACATACTCCCTCCG 58.671 50.000 0.00 0.00 0.00 4.63
5102 8734 1.204146 ATGCAACATACTCCCTCCGT 58.796 50.000 0.00 0.00 0.00 4.69
5103 8735 0.535335 TGCAACATACTCCCTCCGTC 59.465 55.000 0.00 0.00 0.00 4.79
5104 8736 0.179081 GCAACATACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
5105 8737 1.486211 CAACATACTCCCTCCGTCCT 58.514 55.000 0.00 0.00 0.00 3.85
5106 8738 2.662866 CAACATACTCCCTCCGTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
5107 8739 3.028850 CAACATACTCCCTCCGTCCTAA 58.971 50.000 0.00 0.00 0.00 2.69
5108 8740 3.393426 ACATACTCCCTCCGTCCTAAA 57.607 47.619 0.00 0.00 0.00 1.85
5109 8741 3.716431 ACATACTCCCTCCGTCCTAAAA 58.284 45.455 0.00 0.00 0.00 1.52
5110 8742 4.296056 ACATACTCCCTCCGTCCTAAAAT 58.704 43.478 0.00 0.00 0.00 1.82
5111 8743 4.720273 ACATACTCCCTCCGTCCTAAAATT 59.280 41.667 0.00 0.00 0.00 1.82
5112 8744 3.908643 ACTCCCTCCGTCCTAAAATTC 57.091 47.619 0.00 0.00 0.00 2.17
5113 8745 3.451890 ACTCCCTCCGTCCTAAAATTCT 58.548 45.455 0.00 0.00 0.00 2.40
5114 8746 3.844804 ACTCCCTCCGTCCTAAAATTCTT 59.155 43.478 0.00 0.00 0.00 2.52
5115 8747 4.192317 CTCCCTCCGTCCTAAAATTCTTG 58.808 47.826 0.00 0.00 0.00 3.02
5116 8748 3.585732 TCCCTCCGTCCTAAAATTCTTGT 59.414 43.478 0.00 0.00 0.00 3.16
5117 8749 3.939592 CCCTCCGTCCTAAAATTCTTGTC 59.060 47.826 0.00 0.00 0.00 3.18
5118 8750 4.323562 CCCTCCGTCCTAAAATTCTTGTCT 60.324 45.833 0.00 0.00 0.00 3.41
5119 8751 5.246307 CCTCCGTCCTAAAATTCTTGTCTT 58.754 41.667 0.00 0.00 0.00 3.01
5120 8752 6.403878 CCTCCGTCCTAAAATTCTTGTCTTA 58.596 40.000 0.00 0.00 0.00 2.10
5121 8753 7.048512 CCTCCGTCCTAAAATTCTTGTCTTAT 58.951 38.462 0.00 0.00 0.00 1.73
5122 8754 8.202137 CCTCCGTCCTAAAATTCTTGTCTTATA 58.798 37.037 0.00 0.00 0.00 0.98
5123 8755 9.765795 CTCCGTCCTAAAATTCTTGTCTTATAT 57.234 33.333 0.00 0.00 0.00 0.86
5155 8787 4.244425 ACGGATGTATCTGTGTGATAGC 57.756 45.455 5.57 0.00 44.34 2.97
5156 8788 3.005897 ACGGATGTATCTGTGTGATAGCC 59.994 47.826 5.57 0.00 44.34 3.93
5157 8789 3.256879 CGGATGTATCTGTGTGATAGCCT 59.743 47.826 0.00 0.00 38.23 4.58
5158 8790 4.564041 GGATGTATCTGTGTGATAGCCTG 58.436 47.826 0.00 0.00 38.23 4.85
5159 8791 4.562347 GGATGTATCTGTGTGATAGCCTGG 60.562 50.000 0.00 0.00 38.23 4.45
5160 8792 2.103094 TGTATCTGTGTGATAGCCTGGC 59.897 50.000 11.65 11.65 38.23 4.85
5161 8793 1.504912 ATCTGTGTGATAGCCTGGCT 58.495 50.000 26.52 26.52 43.41 4.75
5162 8794 1.279496 TCTGTGTGATAGCCTGGCTT 58.721 50.000 28.55 14.60 40.44 4.35
5163 8795 2.466846 TCTGTGTGATAGCCTGGCTTA 58.533 47.619 28.55 13.11 40.44 3.09
5164 8796 2.837591 TCTGTGTGATAGCCTGGCTTAA 59.162 45.455 28.55 10.52 40.44 1.85
5165 8797 3.455910 TCTGTGTGATAGCCTGGCTTAAT 59.544 43.478 28.55 15.57 40.44 1.40
5166 8798 4.653801 TCTGTGTGATAGCCTGGCTTAATA 59.346 41.667 28.55 9.22 40.44 0.98
5167 8799 4.960938 TGTGTGATAGCCTGGCTTAATAG 58.039 43.478 28.55 0.00 40.44 1.73
5168 8800 4.202357 TGTGTGATAGCCTGGCTTAATAGG 60.202 45.833 28.55 0.00 40.44 2.57
5169 8801 3.327757 TGTGATAGCCTGGCTTAATAGGG 59.672 47.826 28.55 0.00 40.44 3.53
5170 8802 3.583086 GTGATAGCCTGGCTTAATAGGGA 59.417 47.826 28.55 6.21 40.44 4.20
5171 8803 4.226168 GTGATAGCCTGGCTTAATAGGGAT 59.774 45.833 28.55 11.46 40.44 3.85
5172 8804 4.225942 TGATAGCCTGGCTTAATAGGGATG 59.774 45.833 28.55 0.00 40.44 3.51
5173 8805 2.706350 AGCCTGGCTTAATAGGGATGA 58.294 47.619 17.22 0.00 33.89 2.92
5174 8806 3.263724 AGCCTGGCTTAATAGGGATGAT 58.736 45.455 17.22 0.00 33.89 2.45
5175 8807 4.438913 AGCCTGGCTTAATAGGGATGATA 58.561 43.478 17.22 0.00 33.89 2.15
5176 8808 4.472833 AGCCTGGCTTAATAGGGATGATAG 59.527 45.833 17.22 0.00 33.89 2.08
5177 8809 4.471386 GCCTGGCTTAATAGGGATGATAGA 59.529 45.833 12.43 0.00 34.58 1.98
5178 8810 5.627968 GCCTGGCTTAATAGGGATGATAGAC 60.628 48.000 12.43 0.00 34.58 2.59
5179 8811 5.723887 CCTGGCTTAATAGGGATGATAGACT 59.276 44.000 0.00 0.00 0.00 3.24
5180 8812 6.897966 CCTGGCTTAATAGGGATGATAGACTA 59.102 42.308 0.00 0.00 0.00 2.59
5181 8813 7.147811 CCTGGCTTAATAGGGATGATAGACTAC 60.148 44.444 0.00 0.00 0.00 2.73
5182 8814 7.479579 TGGCTTAATAGGGATGATAGACTACT 58.520 38.462 0.00 0.00 0.00 2.57
5183 8815 7.616150 TGGCTTAATAGGGATGATAGACTACTC 59.384 40.741 0.00 0.00 0.00 2.59
5184 8816 7.616150 GGCTTAATAGGGATGATAGACTACTCA 59.384 40.741 0.00 0.00 0.00 3.41
5185 8817 9.196139 GCTTAATAGGGATGATAGACTACTCAT 57.804 37.037 6.96 6.96 34.86 2.90
5215 8847 4.928263 AGGAATTCCTTCTTTTCTGGGAG 58.072 43.478 21.89 0.00 46.09 4.30
5216 8848 3.445450 GGAATTCCTTCTTTTCTGGGAGC 59.555 47.826 17.73 0.00 0.00 4.70
5217 8849 2.586648 TTCCTTCTTTTCTGGGAGCC 57.413 50.000 0.00 0.00 0.00 4.70
5218 8850 0.698818 TCCTTCTTTTCTGGGAGCCC 59.301 55.000 0.00 0.00 0.00 5.19
5219 8851 0.405585 CCTTCTTTTCTGGGAGCCCA 59.594 55.000 8.20 8.20 45.02 5.36
5220 8852 1.006400 CCTTCTTTTCTGGGAGCCCAT 59.994 52.381 9.03 0.00 46.15 4.00
5221 8853 2.558350 CCTTCTTTTCTGGGAGCCCATT 60.558 50.000 9.03 0.00 46.15 3.16
5222 8854 2.514458 TCTTTTCTGGGAGCCCATTC 57.486 50.000 9.03 0.00 46.15 2.67
5223 8855 1.098050 CTTTTCTGGGAGCCCATTCG 58.902 55.000 9.03 0.00 46.15 3.34
5224 8856 0.323360 TTTTCTGGGAGCCCATTCGG 60.323 55.000 9.03 0.00 46.15 4.30
5225 8857 1.204786 TTTCTGGGAGCCCATTCGGA 61.205 55.000 9.03 0.00 46.15 4.55
5226 8858 1.910580 TTCTGGGAGCCCATTCGGAC 61.911 60.000 9.03 0.00 46.15 4.79
5227 8859 2.609299 TGGGAGCCCATTCGGACA 60.609 61.111 3.58 0.00 41.89 4.02
5228 8860 2.190578 GGGAGCCCATTCGGACAG 59.809 66.667 0.00 0.00 35.81 3.51
5229 8861 2.367202 GGGAGCCCATTCGGACAGA 61.367 63.158 0.00 0.00 35.81 3.41
5230 8862 1.602237 GGAGCCCATTCGGACAGAA 59.398 57.895 0.00 0.00 43.93 3.02
5231 8863 0.744771 GGAGCCCATTCGGACAGAAC 60.745 60.000 0.00 0.00 42.39 3.01
5232 8864 0.250513 GAGCCCATTCGGACAGAACT 59.749 55.000 0.00 0.00 42.39 3.01
5233 8865 0.250513 AGCCCATTCGGACAGAACTC 59.749 55.000 0.00 0.00 42.39 3.01
5234 8866 0.744771 GCCCATTCGGACAGAACTCC 60.745 60.000 0.00 0.00 42.39 3.85
5235 8867 0.613260 CCCATTCGGACAGAACTCCA 59.387 55.000 0.00 0.00 42.39 3.86
5236 8868 1.003118 CCCATTCGGACAGAACTCCAA 59.997 52.381 0.00 0.00 42.39 3.53
5237 8869 2.552155 CCCATTCGGACAGAACTCCAAA 60.552 50.000 0.00 0.00 42.39 3.28
5238 8870 2.744202 CCATTCGGACAGAACTCCAAAG 59.256 50.000 0.00 0.00 42.39 2.77
5239 8871 3.403038 CATTCGGACAGAACTCCAAAGT 58.597 45.455 0.00 0.00 42.39 2.66
5241 8873 4.675976 TTCGGACAGAACTCCAAAGTTA 57.324 40.909 0.00 0.00 45.80 2.24
5242 8874 4.675976 TCGGACAGAACTCCAAAGTTAA 57.324 40.909 0.00 0.00 45.80 2.01
5243 8875 4.628074 TCGGACAGAACTCCAAAGTTAAG 58.372 43.478 0.00 0.00 45.80 1.85
5244 8876 3.186613 CGGACAGAACTCCAAAGTTAAGC 59.813 47.826 0.00 0.00 45.80 3.09
5245 8877 3.186613 GGACAGAACTCCAAAGTTAAGCG 59.813 47.826 0.00 0.00 45.80 4.68
5246 8878 3.805207 ACAGAACTCCAAAGTTAAGCGT 58.195 40.909 0.00 0.00 45.80 5.07
5247 8879 3.560068 ACAGAACTCCAAAGTTAAGCGTG 59.440 43.478 0.00 0.00 45.80 5.34
5248 8880 2.548480 AGAACTCCAAAGTTAAGCGTGC 59.452 45.455 0.00 0.00 45.80 5.34
5249 8881 2.256117 ACTCCAAAGTTAAGCGTGCT 57.744 45.000 0.00 0.00 28.74 4.40
5250 8882 2.143925 ACTCCAAAGTTAAGCGTGCTC 58.856 47.619 0.00 0.00 28.74 4.26
5251 8883 2.143122 CTCCAAAGTTAAGCGTGCTCA 58.857 47.619 0.00 0.00 0.00 4.26
5252 8884 2.143122 TCCAAAGTTAAGCGTGCTCAG 58.857 47.619 0.00 0.00 0.00 3.35
5253 8885 1.400242 CCAAAGTTAAGCGTGCTCAGC 60.400 52.381 0.00 0.00 0.00 4.26
5259 8891 2.047465 AGCGTGCTCAGCTTGGAG 60.047 61.111 0.00 0.00 43.24 3.86
5260 8892 2.358003 GCGTGCTCAGCTTGGAGT 60.358 61.111 0.00 0.00 37.24 3.85
5261 8893 1.079819 GCGTGCTCAGCTTGGAGTA 60.080 57.895 0.00 0.00 37.24 2.59
5262 8894 1.080995 GCGTGCTCAGCTTGGAGTAG 61.081 60.000 0.00 0.00 37.24 2.57
5263 8895 0.244994 CGTGCTCAGCTTGGAGTAGT 59.755 55.000 0.00 0.00 37.24 2.73
5264 8896 1.719600 GTGCTCAGCTTGGAGTAGTG 58.280 55.000 0.00 0.00 37.24 2.74
5265 8897 1.001406 GTGCTCAGCTTGGAGTAGTGT 59.999 52.381 0.00 0.00 37.24 3.55
5266 8898 1.273606 TGCTCAGCTTGGAGTAGTGTC 59.726 52.381 0.00 0.00 37.24 3.67
5267 8899 1.273606 GCTCAGCTTGGAGTAGTGTCA 59.726 52.381 3.27 0.00 37.24 3.58
5268 8900 2.673610 GCTCAGCTTGGAGTAGTGTCAG 60.674 54.545 3.27 0.00 37.24 3.51
5269 8901 1.895798 TCAGCTTGGAGTAGTGTCAGG 59.104 52.381 0.00 0.00 0.00 3.86
5270 8902 1.895798 CAGCTTGGAGTAGTGTCAGGA 59.104 52.381 0.00 0.00 0.00 3.86
5271 8903 2.499289 CAGCTTGGAGTAGTGTCAGGAT 59.501 50.000 0.00 0.00 0.00 3.24
5272 8904 2.499289 AGCTTGGAGTAGTGTCAGGATG 59.501 50.000 0.00 0.00 37.54 3.51
5273 8905 2.419297 GCTTGGAGTAGTGTCAGGATGG 60.419 54.545 0.00 0.00 36.16 3.51
5274 8906 1.866015 TGGAGTAGTGTCAGGATGGG 58.134 55.000 0.00 0.00 36.16 4.00
5275 8907 1.078823 TGGAGTAGTGTCAGGATGGGT 59.921 52.381 0.00 0.00 36.16 4.51
5276 8908 1.482593 GGAGTAGTGTCAGGATGGGTG 59.517 57.143 0.00 0.00 36.16 4.61
5277 8909 2.457598 GAGTAGTGTCAGGATGGGTGA 58.542 52.381 0.00 0.00 36.16 4.02
5278 8910 2.166664 GAGTAGTGTCAGGATGGGTGAC 59.833 54.545 0.00 0.00 43.97 3.67
5291 8923 4.324991 GTGACCGGCCGGGAAGTT 62.325 66.667 44.99 26.86 39.97 2.66
5292 8924 4.323477 TGACCGGCCGGGAAGTTG 62.323 66.667 44.99 21.06 39.97 3.16
5296 8928 3.431725 CGGCCGGGAAGTTGCTTC 61.432 66.667 20.10 0.58 39.52 3.86
5303 8935 2.954611 GAAGTTGCTTCCGGGTGC 59.045 61.111 0.00 7.18 34.71 5.01
5304 8936 2.966309 GAAGTTGCTTCCGGGTGCG 61.966 63.158 0.00 0.00 34.71 5.34
5316 8948 4.357947 GGTGCGCACGAGTGAGGA 62.358 66.667 32.35 1.86 0.00 3.71
5317 8949 3.106407 GTGCGCACGAGTGAGGAC 61.106 66.667 26.77 14.42 43.08 3.85
5318 8950 3.601685 TGCGCACGAGTGAGGACA 61.602 61.111 5.66 0.00 0.00 4.02
5319 8951 2.355837 GCGCACGAGTGAGGACAA 60.356 61.111 0.30 0.00 0.00 3.18
5320 8952 1.954146 GCGCACGAGTGAGGACAAA 60.954 57.895 0.30 0.00 0.00 2.83
5321 8953 1.891060 GCGCACGAGTGAGGACAAAG 61.891 60.000 0.30 0.00 0.00 2.77
5322 8954 0.597637 CGCACGAGTGAGGACAAAGT 60.598 55.000 7.50 0.00 0.00 2.66
5323 8955 0.861837 GCACGAGTGAGGACAAAGTG 59.138 55.000 7.50 0.00 33.46 3.16
5324 8956 0.861837 CACGAGTGAGGACAAAGTGC 59.138 55.000 0.00 0.00 0.00 4.40
5325 8957 0.597637 ACGAGTGAGGACAAAGTGCG 60.598 55.000 0.00 0.00 0.00 5.34
5326 8958 1.862806 GAGTGAGGACAAAGTGCGC 59.137 57.895 0.00 0.00 0.00 6.09
5327 8959 0.880278 GAGTGAGGACAAAGTGCGCA 60.880 55.000 5.66 5.66 31.18 6.09
5328 8960 0.882042 AGTGAGGACAAAGTGCGCAG 60.882 55.000 12.22 0.12 34.38 5.18
5329 8961 0.880278 GTGAGGACAAAGTGCGCAGA 60.880 55.000 12.22 0.00 34.38 4.26
5330 8962 0.179059 TGAGGACAAAGTGCGCAGAA 60.179 50.000 12.22 0.00 30.20 3.02
5331 8963 0.944386 GAGGACAAAGTGCGCAGAAA 59.056 50.000 12.22 0.00 0.00 2.52
5332 8964 1.333619 GAGGACAAAGTGCGCAGAAAA 59.666 47.619 12.22 0.00 0.00 2.29
5333 8965 1.334869 AGGACAAAGTGCGCAGAAAAG 59.665 47.619 12.22 2.30 0.00 2.27
5334 8966 1.333619 GGACAAAGTGCGCAGAAAAGA 59.666 47.619 12.22 0.00 0.00 2.52
5335 8967 2.376032 GACAAAGTGCGCAGAAAAGAC 58.624 47.619 12.22 0.00 0.00 3.01
5336 8968 2.017049 ACAAAGTGCGCAGAAAAGACT 58.983 42.857 12.22 0.00 0.00 3.24
5337 8969 3.202906 ACAAAGTGCGCAGAAAAGACTA 58.797 40.909 12.22 0.00 0.00 2.59
5338 8970 3.248602 ACAAAGTGCGCAGAAAAGACTAG 59.751 43.478 12.22 1.53 0.00 2.57
5339 8971 2.821991 AGTGCGCAGAAAAGACTAGT 57.178 45.000 12.22 0.00 0.00 2.57
5340 8972 3.936372 AGTGCGCAGAAAAGACTAGTA 57.064 42.857 12.22 0.00 0.00 1.82
5341 8973 4.457834 AGTGCGCAGAAAAGACTAGTAT 57.542 40.909 12.22 0.00 0.00 2.12
5342 8974 4.822026 AGTGCGCAGAAAAGACTAGTATT 58.178 39.130 12.22 0.00 0.00 1.89
5343 8975 4.627467 AGTGCGCAGAAAAGACTAGTATTG 59.373 41.667 12.22 0.00 0.00 1.90
5344 8976 4.625742 GTGCGCAGAAAAGACTAGTATTGA 59.374 41.667 12.22 0.00 0.00 2.57
5345 8977 5.292101 GTGCGCAGAAAAGACTAGTATTGAT 59.708 40.000 12.22 0.00 0.00 2.57
5346 8978 5.520288 TGCGCAGAAAAGACTAGTATTGATC 59.480 40.000 5.66 5.93 0.00 2.92
5347 8979 5.751028 GCGCAGAAAAGACTAGTATTGATCT 59.249 40.000 0.30 8.07 0.00 2.75
5348 8980 6.292061 GCGCAGAAAAGACTAGTATTGATCTG 60.292 42.308 26.54 26.54 34.47 2.90
5349 8981 6.754209 CGCAGAAAAGACTAGTATTGATCTGT 59.246 38.462 28.67 6.17 34.16 3.41
5350 8982 7.253917 CGCAGAAAAGACTAGTATTGATCTGTG 60.254 40.741 28.67 28.07 35.17 3.66
5351 8983 7.010923 GCAGAAAAGACTAGTATTGATCTGTGG 59.989 40.741 28.67 15.98 34.16 4.17
5352 8984 7.493971 CAGAAAAGACTAGTATTGATCTGTGGG 59.506 40.741 24.47 10.26 30.53 4.61
5353 8985 5.878406 AAGACTAGTATTGATCTGTGGGG 57.122 43.478 1.03 0.00 0.00 4.96
5354 8986 3.643792 AGACTAGTATTGATCTGTGGGGC 59.356 47.826 0.00 0.00 0.00 5.80
5355 8987 2.706190 ACTAGTATTGATCTGTGGGGCC 59.294 50.000 0.00 0.00 0.00 5.80
5356 8988 1.595311 AGTATTGATCTGTGGGGCCA 58.405 50.000 4.39 0.00 0.00 5.36
5357 8989 1.492176 AGTATTGATCTGTGGGGCCAG 59.508 52.381 4.39 0.00 0.00 4.85
5358 8990 1.212935 GTATTGATCTGTGGGGCCAGT 59.787 52.381 4.39 0.00 34.02 4.00
5359 8991 0.257039 ATTGATCTGTGGGGCCAGTC 59.743 55.000 4.39 0.00 34.02 3.51
5360 8992 0.842030 TTGATCTGTGGGGCCAGTCT 60.842 55.000 4.39 0.00 34.02 3.24
5361 8993 0.042581 TGATCTGTGGGGCCAGTCTA 59.957 55.000 4.39 0.00 34.02 2.59
5362 8994 0.755686 GATCTGTGGGGCCAGTCTAG 59.244 60.000 4.39 0.00 34.02 2.43
5363 8995 0.339859 ATCTGTGGGGCCAGTCTAGA 59.660 55.000 4.39 1.35 34.02 2.43
5364 8996 0.339859 TCTGTGGGGCCAGTCTAGAT 59.660 55.000 4.39 0.00 34.02 1.98
5365 8997 0.755686 CTGTGGGGCCAGTCTAGATC 59.244 60.000 4.39 0.00 0.00 2.75
5366 8998 0.691078 TGTGGGGCCAGTCTAGATCC 60.691 60.000 4.39 0.00 0.00 3.36
5367 8999 0.691078 GTGGGGCCAGTCTAGATCCA 60.691 60.000 4.39 0.00 0.00 3.41
5368 9000 0.399091 TGGGGCCAGTCTAGATCCAG 60.399 60.000 4.39 0.00 0.00 3.86
5369 9001 1.751563 GGGCCAGTCTAGATCCAGC 59.248 63.158 4.39 0.00 0.00 4.85
5370 9002 1.751563 GGCCAGTCTAGATCCAGCC 59.248 63.158 0.00 9.43 0.00 4.85
5371 9003 1.050988 GGCCAGTCTAGATCCAGCCA 61.051 60.000 16.69 0.00 38.79 4.75
5372 9004 0.392336 GCCAGTCTAGATCCAGCCAG 59.608 60.000 0.00 0.00 0.00 4.85
5373 9005 1.047002 CCAGTCTAGATCCAGCCAGG 58.953 60.000 0.00 0.00 39.47 4.45
5381 9013 4.856789 TCCAGCCAGGAGTAACGA 57.143 55.556 0.00 0.00 43.07 3.85
5382 9014 2.273908 TCCAGCCAGGAGTAACGAC 58.726 57.895 0.00 0.00 43.07 4.34
5383 9015 1.218316 CCAGCCAGGAGTAACGACC 59.782 63.158 0.00 0.00 41.22 4.79
5384 9016 1.541310 CCAGCCAGGAGTAACGACCA 61.541 60.000 0.00 0.00 41.22 4.02
5385 9017 0.389948 CAGCCAGGAGTAACGACCAC 60.390 60.000 0.00 0.00 0.00 4.16
5386 9018 1.079336 GCCAGGAGTAACGACCACC 60.079 63.158 0.00 0.00 0.00 4.61
5387 9019 1.214589 CCAGGAGTAACGACCACCG 59.785 63.158 0.00 0.00 45.44 4.94
5388 9020 1.214589 CAGGAGTAACGACCACCGG 59.785 63.158 0.00 0.00 43.93 5.28
5389 9021 2.125793 GGAGTAACGACCACCGGC 60.126 66.667 0.00 0.00 43.93 6.13
5390 9022 2.505557 GAGTAACGACCACCGGCG 60.506 66.667 0.00 0.00 43.93 6.46
5391 9023 3.976902 GAGTAACGACCACCGGCGG 62.977 68.421 27.06 27.06 43.93 6.13
5408 9040 4.006357 GGTGTGTCCGGGGCGTTA 62.006 66.667 0.00 0.00 0.00 3.18
5409 9041 2.739671 GTGTGTCCGGGGCGTTAC 60.740 66.667 0.00 0.00 0.00 2.50
5410 9042 3.232483 TGTGTCCGGGGCGTTACA 61.232 61.111 0.00 0.00 0.00 2.41
5411 9043 2.030862 GTGTCCGGGGCGTTACAA 59.969 61.111 0.00 0.00 0.00 2.41
5412 9044 2.030958 GTGTCCGGGGCGTTACAAG 61.031 63.158 0.00 0.00 0.00 3.16
5413 9045 2.344872 GTCCGGGGCGTTACAAGT 59.655 61.111 0.00 0.00 0.00 3.16
5414 9046 1.301953 GTCCGGGGCGTTACAAGTT 60.302 57.895 0.00 0.00 0.00 2.66
5415 9047 1.301874 TCCGGGGCGTTACAAGTTG 60.302 57.895 0.00 0.00 0.00 3.16
5416 9048 2.329614 CCGGGGCGTTACAAGTTGG 61.330 63.158 7.96 0.00 0.00 3.77
5417 9049 1.598685 CGGGGCGTTACAAGTTGGT 60.599 57.895 7.96 0.00 0.00 3.67
5418 9050 0.320596 CGGGGCGTTACAAGTTGGTA 60.321 55.000 7.96 0.00 0.00 3.25
5419 9051 1.676615 CGGGGCGTTACAAGTTGGTAT 60.677 52.381 7.96 0.00 0.00 2.73
5420 9052 2.011947 GGGGCGTTACAAGTTGGTATC 58.988 52.381 7.96 0.00 0.00 2.24
5421 9053 2.616001 GGGGCGTTACAAGTTGGTATCA 60.616 50.000 7.96 0.00 0.00 2.15
5422 9054 2.676342 GGGCGTTACAAGTTGGTATCAG 59.324 50.000 7.96 0.00 0.00 2.90
5423 9055 3.592059 GGCGTTACAAGTTGGTATCAGA 58.408 45.455 7.96 0.00 0.00 3.27
5424 9056 3.617263 GGCGTTACAAGTTGGTATCAGAG 59.383 47.826 7.96 0.00 0.00 3.35
5425 9057 3.062234 GCGTTACAAGTTGGTATCAGAGC 59.938 47.826 7.96 0.00 0.00 4.09
5426 9058 3.617263 CGTTACAAGTTGGTATCAGAGCC 59.383 47.826 7.96 0.00 0.00 4.70
5427 9059 2.386661 ACAAGTTGGTATCAGAGCCG 57.613 50.000 7.96 0.00 0.00 5.52
5428 9060 1.899814 ACAAGTTGGTATCAGAGCCGA 59.100 47.619 7.96 0.00 0.00 5.54
5429 9061 2.271800 CAAGTTGGTATCAGAGCCGAC 58.728 52.381 0.00 6.20 39.00 4.79
5430 9062 0.824759 AGTTGGTATCAGAGCCGACC 59.175 55.000 9.51 0.18 39.42 4.79
5431 9063 0.179081 GTTGGTATCAGAGCCGACCC 60.179 60.000 3.73 0.00 33.97 4.46
5432 9064 0.325296 TTGGTATCAGAGCCGACCCT 60.325 55.000 0.00 0.00 0.00 4.34
5433 9065 0.755698 TGGTATCAGAGCCGACCCTC 60.756 60.000 0.00 0.00 0.00 4.30
5434 9066 1.655329 GTATCAGAGCCGACCCTCG 59.345 63.158 0.00 0.00 40.07 4.63
5435 9067 2.194212 TATCAGAGCCGACCCTCGC 61.194 63.158 0.00 0.00 38.82 5.03
5445 9077 4.060038 ACCCTCGCGGTTACACGG 62.060 66.667 6.13 0.00 45.36 4.94
5446 9078 3.751246 CCCTCGCGGTTACACGGA 61.751 66.667 6.13 0.00 0.00 4.69
5447 9079 2.493030 CCTCGCGGTTACACGGAT 59.507 61.111 6.13 0.00 0.00 4.18
5448 9080 1.876714 CCTCGCGGTTACACGGATG 60.877 63.158 6.13 0.00 0.00 3.51
5449 9081 1.876714 CTCGCGGTTACACGGATGG 60.877 63.158 6.13 0.00 0.00 3.51
5450 9082 2.125832 CGCGGTTACACGGATGGT 60.126 61.111 0.00 0.00 0.00 3.55
5451 9083 1.738830 CGCGGTTACACGGATGGTT 60.739 57.895 0.00 0.00 0.00 3.67
5452 9084 1.791662 GCGGTTACACGGATGGTTG 59.208 57.895 0.00 0.00 0.00 3.77
5453 9085 1.791662 CGGTTACACGGATGGTTGC 59.208 57.895 0.00 0.00 0.00 4.17
5454 9086 1.791662 GGTTACACGGATGGTTGCG 59.208 57.895 0.00 0.00 43.08 4.85
5455 9087 1.641123 GGTTACACGGATGGTTGCGG 61.641 60.000 0.00 0.00 41.53 5.69
5456 9088 0.671163 GTTACACGGATGGTTGCGGA 60.671 55.000 0.00 0.00 41.53 5.54
5457 9089 0.671163 TTACACGGATGGTTGCGGAC 60.671 55.000 0.00 0.00 41.53 4.79
5458 9090 1.817911 TACACGGATGGTTGCGGACA 61.818 55.000 0.00 0.00 41.53 4.02
5459 9091 2.047274 ACGGATGGTTGCGGACAG 60.047 61.111 0.00 0.00 41.53 3.51
5460 9092 2.819595 CGGATGGTTGCGGACAGG 60.820 66.667 0.00 0.00 32.40 4.00
5461 9093 2.351276 GGATGGTTGCGGACAGGT 59.649 61.111 0.00 0.00 0.00 4.00
5462 9094 2.040544 GGATGGTTGCGGACAGGTG 61.041 63.158 0.00 0.00 0.00 4.00
5463 9095 2.672996 ATGGTTGCGGACAGGTGC 60.673 61.111 0.00 0.00 0.00 5.01
5471 9103 4.760047 GGACAGGTGCGCGGTCAT 62.760 66.667 18.54 1.74 33.26 3.06
5472 9104 3.490759 GACAGGTGCGCGGTCATG 61.491 66.667 8.83 6.54 0.00 3.07
5473 9105 4.314440 ACAGGTGCGCGGTCATGT 62.314 61.111 8.83 7.23 0.00 3.21
5474 9106 3.049674 CAGGTGCGCGGTCATGTT 61.050 61.111 8.83 0.00 0.00 2.71
5475 9107 3.049674 AGGTGCGCGGTCATGTTG 61.050 61.111 8.83 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.704493 AGAAGAGTTAATCGTGTTTGCAGTAA 59.296 34.615 0.00 0.00 0.00 2.24
4 5 5.597813 AGAAGAGTTAATCGTGTTTGCAG 57.402 39.130 0.00 0.00 0.00 4.41
5 6 7.439955 TCTTTAGAAGAGTTAATCGTGTTTGCA 59.560 33.333 0.00 0.00 32.71 4.08
42 43 1.868498 CCACGGAAAGTAACGCTTTGA 59.132 47.619 0.00 0.00 46.54 2.69
45 46 2.467566 ATCCACGGAAAGTAACGCTT 57.532 45.000 0.00 0.00 39.52 4.68
94 95 2.456577 ACACCACTGGAAAGCAAAAGT 58.543 42.857 0.71 0.00 0.00 2.66
119 120 5.930209 TTATCCTGATTGGCCTTCCTAAT 57.070 39.130 3.32 0.00 35.26 1.73
142 143 1.384989 GCCGGTAGAGTCTAGCAGCA 61.385 60.000 25.57 0.00 0.00 4.41
143 144 1.360911 GCCGGTAGAGTCTAGCAGC 59.639 63.158 24.95 21.99 0.00 5.25
144 145 1.000827 CATGCCGGTAGAGTCTAGCAG 60.001 57.143 24.95 16.98 33.10 4.24
145 146 1.032794 CATGCCGGTAGAGTCTAGCA 58.967 55.000 24.95 19.12 34.28 3.49
146 147 0.319125 GCATGCCGGTAGAGTCTAGC 60.319 60.000 17.69 17.69 0.00 3.42
152 153 1.933853 GTTAACAGCATGCCGGTAGAG 59.066 52.381 15.66 0.00 42.53 2.43
154 155 2.024176 AGTTAACAGCATGCCGGTAG 57.976 50.000 15.66 1.99 42.53 3.18
174 175 6.073314 ACAGCATTATCCTCTTAATTGCCAT 58.927 36.000 0.00 0.00 0.00 4.40
175 176 5.448654 ACAGCATTATCCTCTTAATTGCCA 58.551 37.500 0.00 0.00 0.00 4.92
176 177 6.396829 AACAGCATTATCCTCTTAATTGCC 57.603 37.500 0.00 0.00 0.00 4.52
185 186 5.415415 CTGCAGTTAACAGCATTATCCTC 57.585 43.478 23.71 0.00 37.73 3.71
198 199 0.037326 CAGTCCCTCGCTGCAGTTAA 60.037 55.000 16.64 0.00 0.00 2.01
202 203 2.031516 CAACAGTCCCTCGCTGCAG 61.032 63.158 10.11 10.11 37.47 4.41
209 210 5.350640 CGGTAAAATCTAACAACAGTCCCTC 59.649 44.000 0.00 0.00 0.00 4.30
260 1764 3.056107 GTGTGGATGCCTAGTACAAGACA 60.056 47.826 0.00 0.00 0.00 3.41
380 1902 9.760660 GGTCATGAATAATAATAAATCTCGCAC 57.239 33.333 0.00 0.00 0.00 5.34
436 1958 8.890718 GTTATCTCCTTAATTAGTTGACCAACC 58.109 37.037 9.07 0.00 42.06 3.77
450 1972 7.676004 TGTTGTCTGTCATGTTATCTCCTTAA 58.324 34.615 0.00 0.00 0.00 1.85
451 1973 7.239763 TGTTGTCTGTCATGTTATCTCCTTA 57.760 36.000 0.00 0.00 0.00 2.69
452 1974 6.114187 TGTTGTCTGTCATGTTATCTCCTT 57.886 37.500 0.00 0.00 0.00 3.36
453 1975 5.745312 TGTTGTCTGTCATGTTATCTCCT 57.255 39.130 0.00 0.00 0.00 3.69
454 1976 6.621596 GCTTTGTTGTCTGTCATGTTATCTCC 60.622 42.308 0.00 0.00 0.00 3.71
455 1977 6.073058 TGCTTTGTTGTCTGTCATGTTATCTC 60.073 38.462 0.00 0.00 0.00 2.75
456 1978 5.764686 TGCTTTGTTGTCTGTCATGTTATCT 59.235 36.000 0.00 0.00 0.00 1.98
460 1982 4.717233 TTGCTTTGTTGTCTGTCATGTT 57.283 36.364 0.00 0.00 0.00 2.71
497 2019 6.160459 AGTGGTCACAGGGATATAAAGGAAAT 59.840 38.462 3.82 0.00 0.00 2.17
1244 4651 3.877559 TGATCTCCTGCGATGTTCAATT 58.122 40.909 0.00 0.00 0.00 2.32
2261 5761 6.548251 TCTGGTAATGTCGTCATCTGGTAATA 59.452 38.462 0.00 0.00 32.56 0.98
2262 5762 5.362717 TCTGGTAATGTCGTCATCTGGTAAT 59.637 40.000 0.00 0.00 32.56 1.89
2263 5763 4.707934 TCTGGTAATGTCGTCATCTGGTAA 59.292 41.667 0.00 0.00 32.56 2.85
2264 5764 4.274978 TCTGGTAATGTCGTCATCTGGTA 58.725 43.478 0.00 0.00 32.56 3.25
2265 5765 3.096852 TCTGGTAATGTCGTCATCTGGT 58.903 45.455 0.00 0.00 32.56 4.00
2296 5796 0.031043 TGCTGCTGTGTGAATGTTGC 59.969 50.000 0.00 0.00 0.00 4.17
2407 5907 5.371526 TCTGATGGGATATTTCTGCAGTTC 58.628 41.667 14.67 4.45 0.00 3.01
2428 5928 3.370840 TTGTGGCTTGGATGCTTATCT 57.629 42.857 0.00 0.00 0.00 1.98
2671 6200 2.933056 GCTAGACAGGTCAGGCAAGTTC 60.933 54.545 1.84 0.00 32.52 3.01
2708 6237 5.824904 ACACAATTGATAAGGATGACTGC 57.175 39.130 13.59 0.00 0.00 4.40
2790 6319 5.215903 AGTCATGAGTATAAGAATCACGCG 58.784 41.667 3.53 3.53 0.00 6.01
2816 6348 6.176896 GGAAGGAAATTCTAGATATCCTGGC 58.823 44.000 17.52 13.64 40.33 4.85
2967 6499 1.067295 ACAGCCCAACAAGATGAGGA 58.933 50.000 0.00 0.00 0.00 3.71
3047 6579 1.291184 CGTGTGGTGTCGATGTGCAT 61.291 55.000 0.00 0.00 0.00 3.96
3106 6638 0.257039 CAGCTGCAATAGGGTCCCTT 59.743 55.000 17.94 0.78 34.61 3.95
3177 6709 6.368516 CCATTTAAAATCAAAGGACGCATGTT 59.631 34.615 0.00 0.00 0.00 2.71
3312 6850 2.759191 CAGCTTCACTGTCACTAGCAA 58.241 47.619 0.00 0.00 41.86 3.91
3357 6895 9.178758 CCCTTGAATATAAATACTTATCAGGCC 57.821 37.037 0.00 0.00 0.00 5.19
3377 6922 6.789268 TGAATTGAAAGAAGATACCCCTTGA 58.211 36.000 0.00 0.00 0.00 3.02
3384 6929 6.024049 CGCTGGTTGAATTGAAAGAAGATAC 58.976 40.000 0.00 0.00 0.00 2.24
3408 6953 1.876497 TTCATTTTCAGCGCCAGCCC 61.876 55.000 2.29 0.00 46.67 5.19
3421 6966 2.232941 CCAGCTGATTGCACCTTCATTT 59.767 45.455 17.39 0.00 45.94 2.32
3447 6996 0.109342 AGGAATAGCTGGGCAATCCG 59.891 55.000 0.00 0.00 38.76 4.18
3475 7024 4.960938 TGTGAACATACAAGTCTTGAGCT 58.039 39.130 19.53 0.00 0.00 4.09
3553 7105 7.501844 AGTCAGCACTAGTATTAATTCCTTCC 58.498 38.462 0.00 0.00 0.00 3.46
3577 7129 7.140048 TGTTAAATACCAAACAAGCGGTTAAG 58.860 34.615 0.00 0.00 39.29 1.85
3581 7133 4.581409 ACTGTTAAATACCAAACAAGCGGT 59.419 37.500 0.00 0.00 35.32 5.68
3584 7136 5.528870 AGCACTGTTAAATACCAAACAAGC 58.471 37.500 0.00 0.00 37.15 4.01
3587 7139 4.319911 GCGAGCACTGTTAAATACCAAACA 60.320 41.667 0.00 0.00 34.57 2.83
3603 7155 2.097160 CGTGAAGCATGCGAGCAC 59.903 61.111 22.36 22.36 36.85 4.40
3658 7210 2.911484 CTCCTCCAGTATGAACCTTGC 58.089 52.381 0.00 0.00 39.69 4.01
3739 7297 2.409948 AGCTATCACCCTCACTTTGC 57.590 50.000 0.00 0.00 0.00 3.68
3895 7462 1.738099 CTCCGACAAGGGAAGCACG 60.738 63.158 0.00 0.00 41.52 5.34
3910 7477 1.230324 GCAAAGTGTCCACAGACTCC 58.770 55.000 0.00 0.00 43.91 3.85
3937 7504 4.657814 ACACACAATTTCCAGGGTATCT 57.342 40.909 0.00 0.00 0.00 1.98
4169 7742 0.610174 TCCACACTAGGCAGCTTCTG 59.390 55.000 0.00 0.00 34.12 3.02
4369 7954 9.185680 GTAGATTGGATGGTAAATTAAGTTGGT 57.814 33.333 0.00 0.00 0.00 3.67
4606 8208 3.694043 AAGCACAAACCAAACCAAACT 57.306 38.095 0.00 0.00 0.00 2.66
4610 8212 1.731720 GCAAAGCACAAACCAAACCA 58.268 45.000 0.00 0.00 0.00 3.67
4611 8213 0.649993 CGCAAAGCACAAACCAAACC 59.350 50.000 0.00 0.00 0.00 3.27
4612 8214 1.355005 ACGCAAAGCACAAACCAAAC 58.645 45.000 0.00 0.00 0.00 2.93
4613 8215 2.941453 TACGCAAAGCACAAACCAAA 57.059 40.000 0.00 0.00 0.00 3.28
4614 8216 2.736978 CATACGCAAAGCACAAACCAA 58.263 42.857 0.00 0.00 0.00 3.67
4655 8257 2.435586 GATCCACGCTGCTGCAGT 60.436 61.111 28.50 10.07 39.64 4.40
4703 8308 8.284693 CCAATCAAATCAAATCAAACCAAACTC 58.715 33.333 0.00 0.00 0.00 3.01
4754 8377 1.197721 GCTTACTTTGATGCGCAGTGT 59.802 47.619 18.32 12.01 0.00 3.55
4901 8533 1.379176 CCCACACACCACACCACAA 60.379 57.895 0.00 0.00 0.00 3.33
4922 8554 3.311106 GCTGAAAATCACACACCACATG 58.689 45.455 0.00 0.00 0.00 3.21
5015 8647 0.739462 TATGCGGAAGTTGGAGCACG 60.739 55.000 0.00 0.00 42.73 5.34
5016 8648 1.448985 TTATGCGGAAGTTGGAGCAC 58.551 50.000 0.00 0.00 42.73 4.40
5088 8720 3.393426 TTTAGGACGGAGGGAGTATGT 57.607 47.619 0.00 0.00 0.00 2.29
5093 8725 4.192317 CAAGAATTTTAGGACGGAGGGAG 58.808 47.826 0.00 0.00 0.00 4.30
5094 8726 3.585732 ACAAGAATTTTAGGACGGAGGGA 59.414 43.478 0.00 0.00 0.00 4.20
5095 8727 3.939592 GACAAGAATTTTAGGACGGAGGG 59.060 47.826 0.00 0.00 0.00 4.30
5096 8728 4.833390 AGACAAGAATTTTAGGACGGAGG 58.167 43.478 0.00 0.00 0.00 4.30
5097 8729 9.765795 ATATAAGACAAGAATTTTAGGACGGAG 57.234 33.333 0.00 0.00 0.00 4.63
5132 8764 5.105716 GGCTATCACACAGATACATCCGTAT 60.106 44.000 0.00 0.00 41.16 3.06
5133 8765 4.217767 GGCTATCACACAGATACATCCGTA 59.782 45.833 0.00 0.00 38.19 4.02
5134 8766 3.005897 GGCTATCACACAGATACATCCGT 59.994 47.826 0.00 0.00 38.19 4.69
5135 8767 3.256879 AGGCTATCACACAGATACATCCG 59.743 47.826 0.00 0.00 38.19 4.18
5136 8768 4.562347 CCAGGCTATCACACAGATACATCC 60.562 50.000 0.00 0.00 38.19 3.51
5137 8769 4.564041 CCAGGCTATCACACAGATACATC 58.436 47.826 0.00 0.00 38.19 3.06
5138 8770 3.244353 GCCAGGCTATCACACAGATACAT 60.244 47.826 3.29 0.00 38.19 2.29
5139 8771 2.103094 GCCAGGCTATCACACAGATACA 59.897 50.000 3.29 0.00 38.19 2.29
5140 8772 2.366916 AGCCAGGCTATCACACAGATAC 59.633 50.000 14.18 0.00 36.99 2.24
5141 8773 2.682594 AGCCAGGCTATCACACAGATA 58.317 47.619 14.18 0.00 36.99 1.98
5142 8774 1.504912 AGCCAGGCTATCACACAGAT 58.495 50.000 14.18 0.00 36.99 2.90
5143 8775 1.279496 AAGCCAGGCTATCACACAGA 58.721 50.000 16.56 0.00 38.25 3.41
5144 8776 2.988010 TAAGCCAGGCTATCACACAG 57.012 50.000 16.56 0.00 38.25 3.66
5145 8777 3.931907 ATTAAGCCAGGCTATCACACA 57.068 42.857 16.56 0.00 38.25 3.72
5146 8778 4.319177 CCTATTAAGCCAGGCTATCACAC 58.681 47.826 16.56 0.00 38.25 3.82
5147 8779 3.327757 CCCTATTAAGCCAGGCTATCACA 59.672 47.826 16.56 0.00 38.25 3.58
5148 8780 3.583086 TCCCTATTAAGCCAGGCTATCAC 59.417 47.826 16.56 0.00 38.25 3.06
5149 8781 3.869310 TCCCTATTAAGCCAGGCTATCA 58.131 45.455 16.56 1.36 38.25 2.15
5150 8782 4.471386 TCATCCCTATTAAGCCAGGCTATC 59.529 45.833 16.56 0.00 38.25 2.08
5151 8783 4.438913 TCATCCCTATTAAGCCAGGCTAT 58.561 43.478 16.56 8.31 38.25 2.97
5152 8784 3.869310 TCATCCCTATTAAGCCAGGCTA 58.131 45.455 16.56 0.00 38.25 3.93
5153 8785 2.706350 TCATCCCTATTAAGCCAGGCT 58.294 47.619 8.70 8.70 42.56 4.58
5154 8786 3.728385 ATCATCCCTATTAAGCCAGGC 57.272 47.619 1.84 1.84 0.00 4.85
5155 8787 5.723887 AGTCTATCATCCCTATTAAGCCAGG 59.276 44.000 0.00 0.00 0.00 4.45
5156 8788 6.865834 AGTCTATCATCCCTATTAAGCCAG 57.134 41.667 0.00 0.00 0.00 4.85
5157 8789 7.479579 AGTAGTCTATCATCCCTATTAAGCCA 58.520 38.462 0.00 0.00 0.00 4.75
5158 8790 7.616150 TGAGTAGTCTATCATCCCTATTAAGCC 59.384 40.741 0.00 0.00 0.00 4.35
5159 8791 8.582657 TGAGTAGTCTATCATCCCTATTAAGC 57.417 38.462 0.00 0.00 0.00 3.09
5194 8826 3.445450 GCTCCCAGAAAAGAAGGAATTCC 59.555 47.826 17.31 17.31 0.00 3.01
5195 8827 3.445450 GGCTCCCAGAAAAGAAGGAATTC 59.555 47.826 0.00 0.00 0.00 2.17
5196 8828 3.435275 GGCTCCCAGAAAAGAAGGAATT 58.565 45.455 0.00 0.00 0.00 2.17
5197 8829 2.291865 GGGCTCCCAGAAAAGAAGGAAT 60.292 50.000 0.00 0.00 35.81 3.01
5198 8830 1.075536 GGGCTCCCAGAAAAGAAGGAA 59.924 52.381 0.00 0.00 35.81 3.36
5199 8831 0.698818 GGGCTCCCAGAAAAGAAGGA 59.301 55.000 0.00 0.00 35.81 3.36
5200 8832 0.405585 TGGGCTCCCAGAAAAGAAGG 59.594 55.000 2.93 0.00 41.89 3.46
5211 8843 1.910580 TTCTGTCCGAATGGGCTCCC 61.911 60.000 0.00 0.00 41.88 4.30
5212 8844 0.744771 GTTCTGTCCGAATGGGCTCC 60.745 60.000 0.00 0.00 41.88 4.70
5213 8845 0.250513 AGTTCTGTCCGAATGGGCTC 59.749 55.000 0.00 0.00 41.88 4.70
5214 8846 0.250513 GAGTTCTGTCCGAATGGGCT 59.749 55.000 0.00 0.00 41.88 5.19
5215 8847 0.744771 GGAGTTCTGTCCGAATGGGC 60.745 60.000 0.00 0.00 41.64 5.36
5216 8848 0.613260 TGGAGTTCTGTCCGAATGGG 59.387 55.000 0.00 0.00 39.81 4.00
5217 8849 2.472695 TTGGAGTTCTGTCCGAATGG 57.527 50.000 0.00 0.00 39.81 3.16
5218 8850 3.403038 ACTTTGGAGTTCTGTCCGAATG 58.597 45.455 0.00 0.00 38.99 2.67
5219 8851 3.771577 ACTTTGGAGTTCTGTCCGAAT 57.228 42.857 0.00 0.00 38.99 3.34
5220 8852 3.553828 AACTTTGGAGTTCTGTCCGAA 57.446 42.857 0.00 0.00 42.35 4.30
5221 8853 4.628074 CTTAACTTTGGAGTTCTGTCCGA 58.372 43.478 0.00 0.00 44.75 4.55
5222 8854 3.186613 GCTTAACTTTGGAGTTCTGTCCG 59.813 47.826 0.00 0.00 44.75 4.79
5223 8855 3.186613 CGCTTAACTTTGGAGTTCTGTCC 59.813 47.826 0.00 0.00 44.75 4.02
5224 8856 3.808174 ACGCTTAACTTTGGAGTTCTGTC 59.192 43.478 0.00 0.00 44.75 3.51
5225 8857 3.560068 CACGCTTAACTTTGGAGTTCTGT 59.440 43.478 0.00 0.00 44.75 3.41
5226 8858 3.607078 GCACGCTTAACTTTGGAGTTCTG 60.607 47.826 0.00 0.00 44.75 3.02
5227 8859 2.548480 GCACGCTTAACTTTGGAGTTCT 59.452 45.455 0.00 0.00 44.75 3.01
5228 8860 2.548480 AGCACGCTTAACTTTGGAGTTC 59.452 45.455 0.00 0.00 44.75 3.01
5230 8862 2.143925 GAGCACGCTTAACTTTGGAGT 58.856 47.619 0.00 0.00 37.87 3.85
5231 8863 2.143122 TGAGCACGCTTAACTTTGGAG 58.857 47.619 0.00 0.00 0.00 3.86
5232 8864 2.143122 CTGAGCACGCTTAACTTTGGA 58.857 47.619 0.00 0.00 0.00 3.53
5233 8865 1.400242 GCTGAGCACGCTTAACTTTGG 60.400 52.381 0.00 0.00 0.00 3.28
5234 8866 1.532868 AGCTGAGCACGCTTAACTTTG 59.467 47.619 7.39 0.00 32.98 2.77
5235 8867 1.884235 AGCTGAGCACGCTTAACTTT 58.116 45.000 7.39 0.00 32.98 2.66
5236 8868 1.532868 CAAGCTGAGCACGCTTAACTT 59.467 47.619 7.39 0.00 45.27 2.66
5237 8869 1.151668 CAAGCTGAGCACGCTTAACT 58.848 50.000 7.39 0.00 45.27 2.24
5238 8870 0.166814 CCAAGCTGAGCACGCTTAAC 59.833 55.000 7.39 0.00 45.27 2.01
5239 8871 0.034756 TCCAAGCTGAGCACGCTTAA 59.965 50.000 7.39 3.27 45.27 1.85
5240 8872 0.390340 CTCCAAGCTGAGCACGCTTA 60.390 55.000 7.39 0.00 45.27 3.09
5242 8874 1.536073 TACTCCAAGCTGAGCACGCT 61.536 55.000 7.39 0.00 39.94 5.07
5243 8875 1.079819 TACTCCAAGCTGAGCACGC 60.080 57.895 7.39 0.00 35.72 5.34
5244 8876 0.244994 ACTACTCCAAGCTGAGCACG 59.755 55.000 7.39 0.00 35.72 5.34
5245 8877 1.001406 ACACTACTCCAAGCTGAGCAC 59.999 52.381 7.39 0.00 35.72 4.40
5246 8878 1.273606 GACACTACTCCAAGCTGAGCA 59.726 52.381 7.39 0.00 35.72 4.26
5247 8879 1.273606 TGACACTACTCCAAGCTGAGC 59.726 52.381 0.00 0.00 35.72 4.26
5248 8880 2.094286 CCTGACACTACTCCAAGCTGAG 60.094 54.545 0.00 0.00 38.37 3.35
5249 8881 1.895798 CCTGACACTACTCCAAGCTGA 59.104 52.381 0.00 0.00 0.00 4.26
5250 8882 1.895798 TCCTGACACTACTCCAAGCTG 59.104 52.381 0.00 0.00 0.00 4.24
5251 8883 2.310779 TCCTGACACTACTCCAAGCT 57.689 50.000 0.00 0.00 0.00 3.74
5252 8884 2.419297 CCATCCTGACACTACTCCAAGC 60.419 54.545 0.00 0.00 0.00 4.01
5253 8885 2.169352 CCCATCCTGACACTACTCCAAG 59.831 54.545 0.00 0.00 0.00 3.61
5254 8886 2.187958 CCCATCCTGACACTACTCCAA 58.812 52.381 0.00 0.00 0.00 3.53
5255 8887 1.078823 ACCCATCCTGACACTACTCCA 59.921 52.381 0.00 0.00 0.00 3.86
5256 8888 1.482593 CACCCATCCTGACACTACTCC 59.517 57.143 0.00 0.00 0.00 3.85
5257 8889 2.166664 GTCACCCATCCTGACACTACTC 59.833 54.545 0.00 0.00 38.36 2.59
5258 8890 2.180276 GTCACCCATCCTGACACTACT 58.820 52.381 0.00 0.00 38.36 2.57
5259 8891 1.207329 GGTCACCCATCCTGACACTAC 59.793 57.143 1.29 0.00 39.97 2.73
5260 8892 1.568504 GGTCACCCATCCTGACACTA 58.431 55.000 1.29 0.00 39.97 2.74
5261 8893 1.544825 CGGTCACCCATCCTGACACT 61.545 60.000 0.00 0.00 39.97 3.55
5262 8894 1.079127 CGGTCACCCATCCTGACAC 60.079 63.158 0.00 0.00 39.97 3.67
5263 8895 2.290287 CCGGTCACCCATCCTGACA 61.290 63.158 0.00 0.00 39.97 3.58
5264 8896 2.584608 CCGGTCACCCATCCTGAC 59.415 66.667 0.00 0.00 37.84 3.51
5265 8897 3.399181 GCCGGTCACCCATCCTGA 61.399 66.667 1.90 0.00 0.00 3.86
5266 8898 4.489771 GGCCGGTCACCCATCCTG 62.490 72.222 0.00 0.00 0.00 3.86
5274 8906 4.324991 AACTTCCCGGCCGGTCAC 62.325 66.667 40.52 0.00 0.00 3.67
5275 8907 4.323477 CAACTTCCCGGCCGGTCA 62.323 66.667 40.52 25.50 0.00 4.02
5279 8911 3.431725 GAAGCAACTTCCCGGCCG 61.432 66.667 21.04 21.04 34.71 6.13
5286 8918 2.954611 GCACCCGGAAGCAACTTC 59.045 61.111 0.73 0.00 39.52 3.01
5287 8919 2.978010 CGCACCCGGAAGCAACTT 60.978 61.111 16.56 0.00 0.00 2.66
5299 8931 4.357947 TCCTCACTCGTGCGCACC 62.358 66.667 33.23 16.56 0.00 5.01
5300 8932 3.106407 GTCCTCACTCGTGCGCAC 61.106 66.667 30.42 30.42 0.00 5.34
5301 8933 2.636778 TTTGTCCTCACTCGTGCGCA 62.637 55.000 5.66 5.66 0.00 6.09
5302 8934 1.891060 CTTTGTCCTCACTCGTGCGC 61.891 60.000 0.00 0.00 0.00 6.09
5303 8935 0.597637 ACTTTGTCCTCACTCGTGCG 60.598 55.000 0.00 0.00 0.00 5.34
5304 8936 0.861837 CACTTTGTCCTCACTCGTGC 59.138 55.000 0.00 0.00 0.00 5.34
5305 8937 0.861837 GCACTTTGTCCTCACTCGTG 59.138 55.000 0.00 0.00 0.00 4.35
5306 8938 0.597637 CGCACTTTGTCCTCACTCGT 60.598 55.000 0.00 0.00 0.00 4.18
5307 8939 1.891060 GCGCACTTTGTCCTCACTCG 61.891 60.000 0.30 0.00 0.00 4.18
5308 8940 0.880278 TGCGCACTTTGTCCTCACTC 60.880 55.000 5.66 0.00 0.00 3.51
5309 8941 0.882042 CTGCGCACTTTGTCCTCACT 60.882 55.000 5.66 0.00 0.00 3.41
5310 8942 0.880278 TCTGCGCACTTTGTCCTCAC 60.880 55.000 5.66 0.00 0.00 3.51
5311 8943 0.179059 TTCTGCGCACTTTGTCCTCA 60.179 50.000 5.66 0.00 0.00 3.86
5312 8944 0.944386 TTTCTGCGCACTTTGTCCTC 59.056 50.000 5.66 0.00 0.00 3.71
5313 8945 1.334869 CTTTTCTGCGCACTTTGTCCT 59.665 47.619 5.66 0.00 0.00 3.85
5314 8946 1.333619 TCTTTTCTGCGCACTTTGTCC 59.666 47.619 5.66 0.00 0.00 4.02
5315 8947 2.032178 AGTCTTTTCTGCGCACTTTGTC 59.968 45.455 5.66 0.00 0.00 3.18
5316 8948 2.017049 AGTCTTTTCTGCGCACTTTGT 58.983 42.857 5.66 0.00 0.00 2.83
5317 8949 2.763249 AGTCTTTTCTGCGCACTTTG 57.237 45.000 5.66 0.00 0.00 2.77
5318 8950 3.467803 ACTAGTCTTTTCTGCGCACTTT 58.532 40.909 5.66 0.00 0.00 2.66
5319 8951 3.113260 ACTAGTCTTTTCTGCGCACTT 57.887 42.857 5.66 0.00 0.00 3.16
5320 8952 2.821991 ACTAGTCTTTTCTGCGCACT 57.178 45.000 5.66 2.15 0.00 4.40
5321 8953 4.625742 TCAATACTAGTCTTTTCTGCGCAC 59.374 41.667 5.66 0.00 0.00 5.34
5322 8954 4.816392 TCAATACTAGTCTTTTCTGCGCA 58.184 39.130 10.98 10.98 0.00 6.09
5323 8955 5.751028 AGATCAATACTAGTCTTTTCTGCGC 59.249 40.000 0.00 0.00 0.00 6.09
5324 8956 6.754209 ACAGATCAATACTAGTCTTTTCTGCG 59.246 38.462 20.08 7.76 33.16 5.18
5325 8957 7.010923 CCACAGATCAATACTAGTCTTTTCTGC 59.989 40.741 20.08 1.61 33.16 4.26
5326 8958 7.493971 CCCACAGATCAATACTAGTCTTTTCTG 59.506 40.741 19.27 19.27 35.40 3.02
5327 8959 7.365117 CCCCACAGATCAATACTAGTCTTTTCT 60.365 40.741 0.00 0.00 0.00 2.52
5328 8960 6.763610 CCCCACAGATCAATACTAGTCTTTTC 59.236 42.308 0.00 0.00 0.00 2.29
5329 8961 6.653989 CCCCACAGATCAATACTAGTCTTTT 58.346 40.000 0.00 0.00 0.00 2.27
5330 8962 5.396884 GCCCCACAGATCAATACTAGTCTTT 60.397 44.000 0.00 0.00 0.00 2.52
5331 8963 4.101741 GCCCCACAGATCAATACTAGTCTT 59.898 45.833 0.00 0.00 0.00 3.01
5332 8964 3.643792 GCCCCACAGATCAATACTAGTCT 59.356 47.826 0.00 0.00 0.00 3.24
5333 8965 3.244249 GGCCCCACAGATCAATACTAGTC 60.244 52.174 0.00 0.00 0.00 2.59
5334 8966 2.706190 GGCCCCACAGATCAATACTAGT 59.294 50.000 0.00 0.00 0.00 2.57
5335 8967 2.705658 TGGCCCCACAGATCAATACTAG 59.294 50.000 0.00 0.00 0.00 2.57
5336 8968 2.705658 CTGGCCCCACAGATCAATACTA 59.294 50.000 0.00 0.00 40.97 1.82
5337 8969 1.492176 CTGGCCCCACAGATCAATACT 59.508 52.381 0.00 0.00 40.97 2.12
5338 8970 1.212935 ACTGGCCCCACAGATCAATAC 59.787 52.381 0.00 0.00 40.97 1.89
5339 8971 1.490490 GACTGGCCCCACAGATCAATA 59.510 52.381 0.00 0.00 40.97 1.90
5340 8972 0.257039 GACTGGCCCCACAGATCAAT 59.743 55.000 0.00 0.00 40.97 2.57
5341 8973 0.842030 AGACTGGCCCCACAGATCAA 60.842 55.000 0.00 0.00 40.97 2.57
5342 8974 0.042581 TAGACTGGCCCCACAGATCA 59.957 55.000 0.00 0.00 40.97 2.92
5343 8975 0.755686 CTAGACTGGCCCCACAGATC 59.244 60.000 0.00 0.00 40.97 2.75
5344 8976 0.339859 TCTAGACTGGCCCCACAGAT 59.660 55.000 0.00 0.00 40.97 2.90
5345 8977 0.339859 ATCTAGACTGGCCCCACAGA 59.660 55.000 0.00 0.00 40.97 3.41
5346 8978 0.755686 GATCTAGACTGGCCCCACAG 59.244 60.000 0.00 0.00 44.03 3.66
5347 8979 0.691078 GGATCTAGACTGGCCCCACA 60.691 60.000 0.00 0.00 0.00 4.17
5348 8980 0.691078 TGGATCTAGACTGGCCCCAC 60.691 60.000 0.00 0.00 0.00 4.61
5349 8981 0.399091 CTGGATCTAGACTGGCCCCA 60.399 60.000 0.00 0.00 0.00 4.96
5350 8982 1.763546 GCTGGATCTAGACTGGCCCC 61.764 65.000 10.75 0.00 0.00 5.80
5351 8983 1.751563 GCTGGATCTAGACTGGCCC 59.248 63.158 10.75 0.00 0.00 5.80
5352 8984 1.050988 TGGCTGGATCTAGACTGGCC 61.051 60.000 13.75 16.26 38.67 5.36
5353 8985 0.392336 CTGGCTGGATCTAGACTGGC 59.608 60.000 13.75 3.61 0.00 4.85
5354 8986 1.047002 CCTGGCTGGATCTAGACTGG 58.953 60.000 21.06 21.06 38.28 4.00
5355 8987 1.962807 CTCCTGGCTGGATCTAGACTG 59.037 57.143 13.75 12.48 45.16 3.51
5356 8988 1.573376 ACTCCTGGCTGGATCTAGACT 59.427 52.381 13.75 0.00 45.16 3.24
5357 8989 2.080654 ACTCCTGGCTGGATCTAGAC 57.919 55.000 13.94 7.79 45.16 2.59
5358 8990 3.567397 GTTACTCCTGGCTGGATCTAGA 58.433 50.000 13.94 0.00 45.16 2.43
5359 8991 2.294791 CGTTACTCCTGGCTGGATCTAG 59.705 54.545 13.94 0.86 45.16 2.43
5360 8992 2.092049 TCGTTACTCCTGGCTGGATCTA 60.092 50.000 13.94 3.97 45.16 1.98
5361 8993 1.115467 CGTTACTCCTGGCTGGATCT 58.885 55.000 13.94 4.93 45.16 2.75
5362 8994 1.112113 TCGTTACTCCTGGCTGGATC 58.888 55.000 13.94 4.65 45.16 3.36
5363 8995 0.824759 GTCGTTACTCCTGGCTGGAT 59.175 55.000 13.94 7.02 45.16 3.41
5364 8996 1.255667 GGTCGTTACTCCTGGCTGGA 61.256 60.000 12.90 12.90 43.86 3.86
5365 8997 1.218316 GGTCGTTACTCCTGGCTGG 59.782 63.158 3.65 3.65 37.10 4.85
5366 8998 0.389948 GTGGTCGTTACTCCTGGCTG 60.390 60.000 0.00 0.00 0.00 4.85
5367 8999 1.542187 GGTGGTCGTTACTCCTGGCT 61.542 60.000 0.00 0.00 0.00 4.75
5368 9000 1.079336 GGTGGTCGTTACTCCTGGC 60.079 63.158 0.00 0.00 0.00 4.85
5369 9001 1.214589 CGGTGGTCGTTACTCCTGG 59.785 63.158 0.00 0.00 0.00 4.45
5370 9002 1.214589 CCGGTGGTCGTTACTCCTG 59.785 63.158 0.00 0.00 37.11 3.86
5371 9003 2.643232 GCCGGTGGTCGTTACTCCT 61.643 63.158 1.90 0.00 37.11 3.69
5372 9004 2.125793 GCCGGTGGTCGTTACTCC 60.126 66.667 1.90 0.00 37.11 3.85
5373 9005 2.505557 CGCCGGTGGTCGTTACTC 60.506 66.667 7.26 0.00 37.11 2.59
5374 9006 4.060038 CCGCCGGTGGTCGTTACT 62.060 66.667 26.60 0.00 37.11 2.24
5391 9023 4.006357 TAACGCCCCGGACACACC 62.006 66.667 0.73 0.00 0.00 4.16
5392 9024 2.739671 GTAACGCCCCGGACACAC 60.740 66.667 0.73 0.00 0.00 3.82
5393 9025 2.718747 CTTGTAACGCCCCGGACACA 62.719 60.000 0.73 0.00 0.00 3.72
5394 9026 2.030862 TTGTAACGCCCCGGACAC 59.969 61.111 0.73 0.00 0.00 3.67
5395 9027 2.042404 AACTTGTAACGCCCCGGACA 62.042 55.000 0.73 0.00 0.00 4.02
5396 9028 1.301953 AACTTGTAACGCCCCGGAC 60.302 57.895 0.73 0.00 0.00 4.79
5397 9029 1.301874 CAACTTGTAACGCCCCGGA 60.302 57.895 0.73 0.00 0.00 5.14
5398 9030 2.329614 CCAACTTGTAACGCCCCGG 61.330 63.158 0.00 0.00 0.00 5.73
5399 9031 0.320596 TACCAACTTGTAACGCCCCG 60.321 55.000 0.00 0.00 0.00 5.73
5400 9032 2.011947 GATACCAACTTGTAACGCCCC 58.988 52.381 0.00 0.00 0.00 5.80
5401 9033 2.676342 CTGATACCAACTTGTAACGCCC 59.324 50.000 0.00 0.00 0.00 6.13
5402 9034 3.592059 TCTGATACCAACTTGTAACGCC 58.408 45.455 0.00 0.00 0.00 5.68
5403 9035 3.062234 GCTCTGATACCAACTTGTAACGC 59.938 47.826 0.00 0.00 0.00 4.84
5404 9036 3.617263 GGCTCTGATACCAACTTGTAACG 59.383 47.826 0.00 0.00 0.00 3.18
5405 9037 3.617263 CGGCTCTGATACCAACTTGTAAC 59.383 47.826 0.00 0.00 0.00 2.50
5406 9038 3.512329 TCGGCTCTGATACCAACTTGTAA 59.488 43.478 0.00 0.00 0.00 2.41
5407 9039 3.093814 TCGGCTCTGATACCAACTTGTA 58.906 45.455 0.00 0.00 0.00 2.41
5408 9040 1.899814 TCGGCTCTGATACCAACTTGT 59.100 47.619 0.00 0.00 0.00 3.16
5409 9041 2.271800 GTCGGCTCTGATACCAACTTG 58.728 52.381 0.00 0.00 0.00 3.16
5410 9042 1.207329 GGTCGGCTCTGATACCAACTT 59.793 52.381 0.00 0.00 32.04 2.66
5411 9043 0.824759 GGTCGGCTCTGATACCAACT 59.175 55.000 0.00 0.00 32.04 3.16
5412 9044 0.179081 GGGTCGGCTCTGATACCAAC 60.179 60.000 0.00 0.00 33.46 3.77
5413 9045 0.325296 AGGGTCGGCTCTGATACCAA 60.325 55.000 0.00 0.00 33.46 3.67
5414 9046 0.755698 GAGGGTCGGCTCTGATACCA 60.756 60.000 0.00 0.00 33.46 3.25
5415 9047 1.797211 CGAGGGTCGGCTCTGATACC 61.797 65.000 0.00 0.00 36.00 2.73
5416 9048 1.655329 CGAGGGTCGGCTCTGATAC 59.345 63.158 0.00 0.00 36.00 2.24
5417 9049 2.194212 GCGAGGGTCGGCTCTGATA 61.194 63.158 0.00 0.00 40.84 2.15
5418 9050 3.532155 GCGAGGGTCGGCTCTGAT 61.532 66.667 0.00 0.00 40.84 2.90
5433 9065 1.738830 AACCATCCGTGTAACCGCG 60.739 57.895 0.00 0.00 44.04 6.46
5434 9066 1.791662 CAACCATCCGTGTAACCGC 59.208 57.895 0.00 0.00 0.00 5.68
5435 9067 1.791662 GCAACCATCCGTGTAACCG 59.208 57.895 0.00 0.00 0.00 4.44
5436 9068 1.641123 CCGCAACCATCCGTGTAACC 61.641 60.000 0.00 0.00 0.00 2.85
5437 9069 0.671163 TCCGCAACCATCCGTGTAAC 60.671 55.000 0.00 0.00 0.00 2.50
5438 9070 0.671163 GTCCGCAACCATCCGTGTAA 60.671 55.000 0.00 0.00 0.00 2.41
5439 9071 1.079681 GTCCGCAACCATCCGTGTA 60.080 57.895 0.00 0.00 0.00 2.90
5440 9072 2.358247 GTCCGCAACCATCCGTGT 60.358 61.111 0.00 0.00 0.00 4.49
5441 9073 2.358125 TGTCCGCAACCATCCGTG 60.358 61.111 0.00 0.00 0.00 4.94
5442 9074 2.047274 CTGTCCGCAACCATCCGT 60.047 61.111 0.00 0.00 0.00 4.69
5443 9075 2.819595 CCTGTCCGCAACCATCCG 60.820 66.667 0.00 0.00 0.00 4.18
5444 9076 2.040544 CACCTGTCCGCAACCATCC 61.041 63.158 0.00 0.00 0.00 3.51
5445 9077 2.690778 GCACCTGTCCGCAACCATC 61.691 63.158 0.00 0.00 0.00 3.51
5446 9078 2.672996 GCACCTGTCCGCAACCAT 60.673 61.111 0.00 0.00 0.00 3.55
5454 9086 4.760047 ATGACCGCGCACCTGTCC 62.760 66.667 8.75 0.00 0.00 4.02
5455 9087 3.490759 CATGACCGCGCACCTGTC 61.491 66.667 8.75 8.79 0.00 3.51
5456 9088 3.825160 AACATGACCGCGCACCTGT 62.825 57.895 8.75 4.82 0.00 4.00
5457 9089 3.049674 AACATGACCGCGCACCTG 61.050 61.111 8.75 4.16 0.00 4.00
5458 9090 3.049674 CAACATGACCGCGCACCT 61.050 61.111 8.75 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.