Multiple sequence alignment - TraesCS6A01G035400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G035400 chr6A 100.000 3086 0 0 1 3086 17396541 17399626 0.000000e+00 5699.0
1 TraesCS6A01G035400 chr6B 93.368 1523 75 10 1583 3085 29268958 29270474 0.000000e+00 2230.0
2 TraesCS6A01G035400 chr6B 91.049 648 41 8 959 1590 29268173 29268819 0.000000e+00 859.0
3 TraesCS6A01G035400 chr6B 87.430 533 55 8 1939 2465 29559262 29559788 1.220000e-168 603.0
4 TraesCS6A01G035400 chr6B 80.317 442 62 16 2654 3085 29274979 29275405 8.310000e-81 311.0
5 TraesCS6A01G035400 chr6B 90.071 141 9 1 1 141 29267368 29267503 8.790000e-41 178.0
6 TraesCS6A01G035400 chr6B 87.402 127 16 0 1798 1924 29558969 29559095 2.480000e-31 147.0
7 TraesCS6A01G035400 chr6B 77.517 298 29 5 125 422 29267863 29268122 8.920000e-31 145.0
8 TraesCS6A01G035400 chr6B 74.634 410 57 28 1711 2097 29560626 29561011 1.490000e-28 137.0
9 TraesCS6A01G035400 chr6B 96.552 58 2 0 865 922 29268107 29268164 2.530000e-16 97.1
10 TraesCS6A01G035400 chr6B 97.143 35 0 1 2884 2917 59403548 59403582 1.200000e-04 58.4
11 TraesCS6A01G035400 chr6D 91.541 662 31 7 865 1526 16601577 16602213 0.000000e+00 889.0
12 TraesCS6A01G035400 chr6D 88.258 528 38 3 1582 2108 16602396 16602900 7.320000e-171 610.0
13 TraesCS6A01G035400 chr6D 89.848 394 27 11 2696 3086 16605574 16605957 7.690000e-136 494.0
14 TraesCS6A01G035400 chr6D 90.278 288 15 5 2176 2454 16602932 16603215 6.290000e-97 364.0
15 TraesCS6A01G035400 chr6D 82.500 360 42 8 1051 1392 16608482 16608838 2.330000e-76 296.0
16 TraesCS6A01G035400 chr6D 84.615 234 31 5 1591 1823 16608918 16609147 8.610000e-56 228.0
17 TraesCS6A01G035400 chr6D 79.661 295 31 9 128 422 16601327 16601592 5.250000e-43 185.0
18 TraesCS6A01G035400 chr6D 90.647 139 8 1 3 141 16601174 16601307 2.440000e-41 180.0
19 TraesCS6A01G035400 chr6D 90.909 88 8 0 30 117 16636165 16636252 5.410000e-23 119.0
20 TraesCS6A01G035400 chr2A 96.462 424 14 1 442 864 748798017 748798440 0.000000e+00 699.0
21 TraesCS6A01G035400 chr2A 96.226 424 13 3 442 864 614575557 614575136 0.000000e+00 691.0
22 TraesCS6A01G035400 chr2A 95.195 437 18 3 436 871 8679362 8678928 0.000000e+00 688.0
23 TraesCS6A01G035400 chr7A 95.794 428 16 2 440 866 62496312 62495886 0.000000e+00 689.0
24 TraesCS6A01G035400 chr1A 96.000 425 15 2 440 863 48771964 48771541 0.000000e+00 689.0
25 TraesCS6A01G035400 chr1A 95.765 425 15 2 442 865 95433242 95432820 0.000000e+00 682.0
26 TraesCS6A01G035400 chr3A 95.765 425 14 3 442 863 55619475 55619052 0.000000e+00 682.0
27 TraesCS6A01G035400 chr3A 78.066 579 81 31 987 1525 128086505 128085933 1.070000e-84 324.0
28 TraesCS6A01G035400 chr3A 83.824 68 9 1 2579 2646 533627903 533627968 2.570000e-06 63.9
29 TraesCS6A01G035400 chr5A 95.745 423 16 2 442 863 350796136 350795715 0.000000e+00 680.0
30 TraesCS6A01G035400 chr4A 95.745 423 16 2 442 863 593114526 593114947 0.000000e+00 680.0
31 TraesCS6A01G035400 chr3B 77.643 577 85 28 987 1525 173324313 173323743 8.310000e-81 311.0
32 TraesCS6A01G035400 chr3B 88.095 84 10 0 2568 2651 818304770 818304687 1.960000e-17 100.0
33 TraesCS6A01G035400 chr4B 82.203 354 46 12 999 1338 34571639 34571989 3.890000e-74 289.0
34 TraesCS6A01G035400 chr3D 76.776 577 90 26 987 1525 121880891 121880321 1.810000e-72 283.0
35 TraesCS6A01G035400 chr3D 80.000 300 26 18 987 1256 121735416 121735121 1.130000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G035400 chr6A 17396541 17399626 3085 False 5699.000000 5699 100.000000 1 3086 1 chr6A.!!$F1 3085
1 TraesCS6A01G035400 chr6B 29267368 29270474 3106 False 701.820000 2230 89.711400 1 3085 5 chr6B.!!$F3 3084
2 TraesCS6A01G035400 chr6B 29558969 29561011 2042 False 295.666667 603 83.155333 1711 2465 3 chr6B.!!$F4 754
3 TraesCS6A01G035400 chr6D 16601174 16609147 7973 False 405.750000 889 87.168500 3 3086 8 chr6D.!!$F2 3083
4 TraesCS6A01G035400 chr3A 128085933 128086505 572 True 324.000000 324 78.066000 987 1525 1 chr3A.!!$R2 538
5 TraesCS6A01G035400 chr3B 173323743 173324313 570 True 311.000000 311 77.643000 987 1525 1 chr3B.!!$R1 538
6 TraesCS6A01G035400 chr3D 121880321 121880891 570 True 283.000000 283 76.776000 987 1525 1 chr3D.!!$R2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 829 0.031414 ACCATAGGGAGTAGGGCGTT 60.031 55.0 0.0 0.0 35.85 4.84 F
459 836 0.035739 GGAGTAGGGCGTTTTGGTGA 59.964 55.0 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 2815 3.054878 CAACTTCATTGCACTTTCCTGC 58.945 45.455 0.0 0.0 37.70 4.85 R
2509 4008 5.695851 AGCTGATCGACAAATTTTCTTGT 57.304 34.783 0.0 0.0 42.23 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.920524 TGGAGTTGTTGCGGTCTTTTA 58.079 42.857 0.00 0.00 0.00 1.52
29 30 3.280295 TGGAGTTGTTGCGGTCTTTTAA 58.720 40.909 0.00 0.00 0.00 1.52
30 31 3.886505 TGGAGTTGTTGCGGTCTTTTAAT 59.113 39.130 0.00 0.00 0.00 1.40
31 32 4.339814 TGGAGTTGTTGCGGTCTTTTAATT 59.660 37.500 0.00 0.00 0.00 1.40
32 33 5.163499 TGGAGTTGTTGCGGTCTTTTAATTT 60.163 36.000 0.00 0.00 0.00 1.82
121 122 3.256879 TGTTGTTCCTTTGTGCAAGTTGA 59.743 39.130 7.16 0.00 0.00 3.18
127 504 6.183360 TGTTCCTTTGTGCAAGTTGATTGTAT 60.183 34.615 7.16 0.00 41.29 2.29
133 510 6.480524 TGTGCAAGTTGATTGTATAGTCAC 57.519 37.500 7.16 1.74 41.29 3.67
136 513 6.368791 GTGCAAGTTGATTGTATAGTCACAGA 59.631 38.462 7.16 0.00 41.29 3.41
157 534 6.765036 ACAGACTTATTGCAATGATCACTAGG 59.235 38.462 22.27 3.03 0.00 3.02
163 540 9.499479 CTTATTGCAATGATCACTAGGTAAGAT 57.501 33.333 22.27 0.00 0.00 2.40
179 556 6.402456 GGTAAGATACCGATAGAAGTTGGT 57.598 41.667 0.00 0.00 39.39 3.67
213 590 1.343506 GCGGCTTGCTGAGAAATTTG 58.656 50.000 5.52 0.00 41.73 2.32
217 594 3.311966 GGCTTGCTGAGAAATTTGTGTC 58.688 45.455 0.00 0.00 0.00 3.67
223 600 3.003275 GCTGAGAAATTTGTGTCCGTTCA 59.997 43.478 0.00 0.00 0.00 3.18
224 601 4.320494 GCTGAGAAATTTGTGTCCGTTCAT 60.320 41.667 0.00 0.00 0.00 2.57
264 641 4.217118 GCTCATGTTTGATTCCACACTTCT 59.783 41.667 0.00 0.00 0.00 2.85
270 647 6.295249 TGTTTGATTCCACACTTCTCATGTA 58.705 36.000 0.00 0.00 0.00 2.29
273 650 7.615582 TTGATTCCACACTTCTCATGTAATC 57.384 36.000 0.00 0.00 30.60 1.75
287 664 6.309494 TCTCATGTAATCGTTTTACTTGTCGG 59.691 38.462 17.59 12.70 34.00 4.79
312 689 7.174253 GGTCATGTAAACTTGAGGATGTAACAA 59.826 37.037 0.00 0.00 31.81 2.83
313 690 8.730680 GTCATGTAAACTTGAGGATGTAACAAT 58.269 33.333 0.00 0.00 31.81 2.71
314 691 8.729756 TCATGTAAACTTGAGGATGTAACAATG 58.270 33.333 0.00 0.00 0.00 2.82
315 692 6.908825 TGTAAACTTGAGGATGTAACAATGC 58.091 36.000 0.00 0.00 0.00 3.56
316 693 6.488344 TGTAAACTTGAGGATGTAACAATGCA 59.512 34.615 0.00 0.00 0.00 3.96
317 694 6.403866 AAACTTGAGGATGTAACAATGCAA 57.596 33.333 0.00 0.00 0.00 4.08
318 695 5.376854 ACTTGAGGATGTAACAATGCAAC 57.623 39.130 0.00 0.00 0.00 4.17
319 696 4.218417 ACTTGAGGATGTAACAATGCAACC 59.782 41.667 0.00 0.00 34.86 3.77
320 697 3.088532 TGAGGATGTAACAATGCAACCC 58.911 45.455 0.00 0.00 35.15 4.11
321 698 2.091541 AGGATGTAACAATGCAACCCG 58.908 47.619 0.00 0.00 35.15 5.28
322 699 1.469079 GGATGTAACAATGCAACCCGC 60.469 52.381 0.00 0.00 42.89 6.13
395 772 6.590234 AAAAGGAATGTCCATACTGTTTCC 57.410 37.500 0.00 0.00 39.61 3.13
412 789 8.331931 ACTGTTTCCCAGAGATTATACCATAA 57.668 34.615 0.00 0.00 44.49 1.90
418 795 5.723887 CCCAGAGATTATACCATAAGCCTCT 59.276 44.000 0.00 0.00 0.00 3.69
422 799 9.566432 CAGAGATTATACCATAAGCCTCTTTTT 57.434 33.333 9.23 0.00 0.00 1.94
443 820 3.887621 TTTTGAGACGACCATAGGGAG 57.112 47.619 0.00 0.00 38.05 4.30
444 821 2.526888 TTGAGACGACCATAGGGAGT 57.473 50.000 0.00 0.00 38.05 3.85
445 822 3.657398 TTGAGACGACCATAGGGAGTA 57.343 47.619 0.00 0.00 38.05 2.59
446 823 3.210232 TGAGACGACCATAGGGAGTAG 57.790 52.381 0.00 0.00 38.05 2.57
447 824 2.158652 TGAGACGACCATAGGGAGTAGG 60.159 54.545 0.00 0.00 38.05 3.18
448 825 1.145325 AGACGACCATAGGGAGTAGGG 59.855 57.143 0.00 0.00 38.65 3.53
449 826 0.469518 ACGACCATAGGGAGTAGGGC 60.470 60.000 0.00 0.00 35.85 5.19
450 827 1.524863 CGACCATAGGGAGTAGGGCG 61.525 65.000 0.00 0.00 35.85 6.13
451 828 0.469518 GACCATAGGGAGTAGGGCGT 60.470 60.000 0.00 0.00 35.85 5.68
452 829 0.031414 ACCATAGGGAGTAGGGCGTT 60.031 55.000 0.00 0.00 35.85 4.84
453 830 1.129058 CCATAGGGAGTAGGGCGTTT 58.871 55.000 0.00 0.00 35.59 3.60
454 831 1.489230 CCATAGGGAGTAGGGCGTTTT 59.511 52.381 0.00 0.00 35.59 2.43
455 832 2.561569 CATAGGGAGTAGGGCGTTTTG 58.438 52.381 0.00 0.00 0.00 2.44
456 833 0.906775 TAGGGAGTAGGGCGTTTTGG 59.093 55.000 0.00 0.00 0.00 3.28
457 834 1.131928 AGGGAGTAGGGCGTTTTGGT 61.132 55.000 0.00 0.00 0.00 3.67
458 835 0.958876 GGGAGTAGGGCGTTTTGGTG 60.959 60.000 0.00 0.00 0.00 4.17
459 836 0.035739 GGAGTAGGGCGTTTTGGTGA 59.964 55.000 0.00 0.00 0.00 4.02
460 837 1.154197 GAGTAGGGCGTTTTGGTGAC 58.846 55.000 0.00 0.00 0.00 3.67
461 838 0.250597 AGTAGGGCGTTTTGGTGACC 60.251 55.000 0.00 0.00 0.00 4.02
462 839 1.301874 TAGGGCGTTTTGGTGACCG 60.302 57.895 0.00 0.00 0.00 4.79
463 840 1.756408 TAGGGCGTTTTGGTGACCGA 61.756 55.000 0.00 0.00 0.00 4.69
464 841 2.613506 GGGCGTTTTGGTGACCGAG 61.614 63.158 0.00 0.00 0.00 4.63
465 842 2.251371 GCGTTTTGGTGACCGAGC 59.749 61.111 0.00 0.00 0.00 5.03
466 843 2.251642 GCGTTTTGGTGACCGAGCT 61.252 57.895 0.00 0.00 0.00 4.09
467 844 1.860078 CGTTTTGGTGACCGAGCTC 59.140 57.895 2.73 2.73 0.00 4.09
468 845 1.566018 CGTTTTGGTGACCGAGCTCC 61.566 60.000 8.47 0.00 0.00 4.70
469 846 0.534203 GTTTTGGTGACCGAGCTCCA 60.534 55.000 8.47 0.00 0.00 3.86
470 847 0.400213 TTTTGGTGACCGAGCTCCAT 59.600 50.000 8.47 0.00 32.09 3.41
471 848 0.321564 TTTGGTGACCGAGCTCCATG 60.322 55.000 8.47 0.00 32.09 3.66
472 849 1.191489 TTGGTGACCGAGCTCCATGA 61.191 55.000 8.47 0.00 32.09 3.07
473 850 1.191489 TGGTGACCGAGCTCCATGAA 61.191 55.000 8.47 0.00 0.00 2.57
474 851 0.460987 GGTGACCGAGCTCCATGAAG 60.461 60.000 8.47 0.00 0.00 3.02
475 852 1.086634 GTGACCGAGCTCCATGAAGC 61.087 60.000 8.47 0.00 42.82 3.86
476 853 1.522580 GACCGAGCTCCATGAAGCC 60.523 63.158 8.47 0.00 43.56 4.35
477 854 2.203126 CCGAGCTCCATGAAGCCC 60.203 66.667 8.47 0.00 43.56 5.19
478 855 2.739996 CCGAGCTCCATGAAGCCCT 61.740 63.158 8.47 0.00 43.56 5.19
479 856 1.222936 CGAGCTCCATGAAGCCCTT 59.777 57.895 8.47 0.00 43.56 3.95
480 857 0.393537 CGAGCTCCATGAAGCCCTTT 60.394 55.000 8.47 0.00 43.56 3.11
481 858 1.134401 CGAGCTCCATGAAGCCCTTTA 60.134 52.381 8.47 0.00 43.56 1.85
482 859 2.486191 CGAGCTCCATGAAGCCCTTTAT 60.486 50.000 8.47 0.00 43.56 1.40
483 860 3.560105 GAGCTCCATGAAGCCCTTTATT 58.440 45.455 0.00 0.00 43.56 1.40
484 861 3.956848 GAGCTCCATGAAGCCCTTTATTT 59.043 43.478 0.00 0.00 43.56 1.40
485 862 4.356436 AGCTCCATGAAGCCCTTTATTTT 58.644 39.130 0.00 0.00 43.56 1.82
486 863 4.779489 AGCTCCATGAAGCCCTTTATTTTT 59.221 37.500 0.00 0.00 43.56 1.94
487 864 4.872124 GCTCCATGAAGCCCTTTATTTTTG 59.128 41.667 0.00 0.00 36.22 2.44
488 865 5.337491 GCTCCATGAAGCCCTTTATTTTTGA 60.337 40.000 0.00 0.00 36.22 2.69
489 866 6.678568 TCCATGAAGCCCTTTATTTTTGAA 57.321 33.333 0.00 0.00 0.00 2.69
490 867 7.072263 TCCATGAAGCCCTTTATTTTTGAAA 57.928 32.000 0.00 0.00 0.00 2.69
491 868 7.512992 TCCATGAAGCCCTTTATTTTTGAAAA 58.487 30.769 0.00 0.00 0.00 2.29
492 869 7.995488 TCCATGAAGCCCTTTATTTTTGAAAAA 59.005 29.630 5.47 5.47 0.00 1.94
493 870 8.795513 CCATGAAGCCCTTTATTTTTGAAAAAT 58.204 29.630 18.56 18.56 0.00 1.82
496 873 9.401058 TGAAGCCCTTTATTTTTGAAAAATTCA 57.599 25.926 19.57 12.70 38.04 2.57
557 934 9.719355 AATAAATATGCAACTATACACGGATGA 57.281 29.630 0.00 0.00 0.00 2.92
558 935 7.658179 AAATATGCAACTATACACGGATGAG 57.342 36.000 0.00 0.00 0.00 2.90
559 936 4.937201 ATGCAACTATACACGGATGAGA 57.063 40.909 0.00 0.00 0.00 3.27
560 937 4.937201 TGCAACTATACACGGATGAGAT 57.063 40.909 0.00 0.00 0.00 2.75
561 938 4.620982 TGCAACTATACACGGATGAGATG 58.379 43.478 0.00 0.00 0.00 2.90
562 939 4.099419 TGCAACTATACACGGATGAGATGT 59.901 41.667 0.00 0.00 0.00 3.06
563 940 5.300792 TGCAACTATACACGGATGAGATGTA 59.699 40.000 0.00 0.00 33.54 2.29
564 941 6.015434 TGCAACTATACACGGATGAGATGTAT 60.015 38.462 0.00 0.00 41.33 2.29
565 942 6.309009 GCAACTATACACGGATGAGATGTATG 59.691 42.308 6.41 0.91 39.34 2.39
566 943 7.371159 CAACTATACACGGATGAGATGTATGT 58.629 38.462 6.41 1.41 39.34 2.29
567 944 6.914259 ACTATACACGGATGAGATGTATGTG 58.086 40.000 6.41 0.00 39.34 3.21
568 945 5.791336 ATACACGGATGAGATGTATGTGT 57.209 39.130 0.59 0.59 37.97 3.72
569 946 3.785486 ACACGGATGAGATGTATGTGTG 58.215 45.455 0.00 0.00 37.66 3.82
570 947 3.195610 ACACGGATGAGATGTATGTGTGT 59.804 43.478 0.00 0.00 37.66 3.72
571 948 3.553105 CACGGATGAGATGTATGTGTGTG 59.447 47.826 0.00 0.00 0.00 3.82
572 949 3.195610 ACGGATGAGATGTATGTGTGTGT 59.804 43.478 0.00 0.00 0.00 3.72
573 950 4.401202 ACGGATGAGATGTATGTGTGTGTA 59.599 41.667 0.00 0.00 0.00 2.90
574 951 5.105513 ACGGATGAGATGTATGTGTGTGTAA 60.106 40.000 0.00 0.00 0.00 2.41
575 952 5.810074 CGGATGAGATGTATGTGTGTGTAAA 59.190 40.000 0.00 0.00 0.00 2.01
576 953 6.312672 CGGATGAGATGTATGTGTGTGTAAAA 59.687 38.462 0.00 0.00 0.00 1.52
577 954 7.148490 CGGATGAGATGTATGTGTGTGTAAAAA 60.148 37.037 0.00 0.00 0.00 1.94
578 955 8.677300 GGATGAGATGTATGTGTGTGTAAAAAT 58.323 33.333 0.00 0.00 0.00 1.82
581 958 9.061435 TGAGATGTATGTGTGTGTAAAAATTCA 57.939 29.630 0.00 0.00 0.00 2.57
582 959 9.891828 GAGATGTATGTGTGTGTAAAAATTCAA 57.108 29.630 0.00 0.00 0.00 2.69
583 960 9.897744 AGATGTATGTGTGTGTAAAAATTCAAG 57.102 29.630 0.00 0.00 0.00 3.02
584 961 9.891828 GATGTATGTGTGTGTAAAAATTCAAGA 57.108 29.630 0.00 0.00 0.00 3.02
586 963 9.676195 TGTATGTGTGTGTAAAAATTCAAGATG 57.324 29.630 0.00 0.00 0.00 2.90
587 964 9.891828 GTATGTGTGTGTAAAAATTCAAGATGA 57.108 29.630 0.00 0.00 0.00 2.92
589 966 9.814899 ATGTGTGTGTAAAAATTCAAGATGAAA 57.185 25.926 0.00 0.00 40.12 2.69
590 967 9.814899 TGTGTGTGTAAAAATTCAAGATGAAAT 57.185 25.926 0.00 0.00 40.12 2.17
602 979 8.847444 ATTCAAGATGAAATACTTCGAAATGC 57.153 30.769 0.00 0.00 40.12 3.56
603 980 6.477742 TCAAGATGAAATACTTCGAAATGCG 58.522 36.000 0.00 0.00 42.69 4.73
604 981 7.148490 TTCAAGATGAAATACTTCGAAATGCGA 60.148 33.333 0.00 0.00 39.38 5.10
638 1015 8.707938 AAAAAGACAAATTTCTGGACTTTGAG 57.292 30.769 5.85 0.00 34.69 3.02
639 1016 6.396829 AAGACAAATTTCTGGACTTTGAGG 57.603 37.500 5.85 0.00 34.69 3.86
640 1017 5.694995 AGACAAATTTCTGGACTTTGAGGA 58.305 37.500 5.85 0.00 34.69 3.71
641 1018 6.310149 AGACAAATTTCTGGACTTTGAGGAT 58.690 36.000 5.85 0.00 34.69 3.24
642 1019 6.208204 AGACAAATTTCTGGACTTTGAGGATG 59.792 38.462 5.85 0.00 34.69 3.51
643 1020 6.070656 ACAAATTTCTGGACTTTGAGGATGA 58.929 36.000 5.85 0.00 34.69 2.92
644 1021 6.550854 ACAAATTTCTGGACTTTGAGGATGAA 59.449 34.615 5.85 0.00 34.69 2.57
645 1022 7.234166 ACAAATTTCTGGACTTTGAGGATGAAT 59.766 33.333 5.85 0.00 34.69 2.57
646 1023 8.742777 CAAATTTCTGGACTTTGAGGATGAATA 58.257 33.333 0.00 0.00 32.83 1.75
647 1024 8.517062 AATTTCTGGACTTTGAGGATGAATAG 57.483 34.615 0.00 0.00 0.00 1.73
648 1025 6.627087 TTCTGGACTTTGAGGATGAATAGT 57.373 37.500 0.00 0.00 0.00 2.12
649 1026 7.733773 TTCTGGACTTTGAGGATGAATAGTA 57.266 36.000 0.00 0.00 0.00 1.82
650 1027 7.733773 TCTGGACTTTGAGGATGAATAGTAA 57.266 36.000 0.00 0.00 0.00 2.24
651 1028 7.556844 TCTGGACTTTGAGGATGAATAGTAAC 58.443 38.462 0.00 0.00 0.00 2.50
652 1029 7.180229 TCTGGACTTTGAGGATGAATAGTAACA 59.820 37.037 0.00 0.00 0.00 2.41
653 1030 7.861629 TGGACTTTGAGGATGAATAGTAACAT 58.138 34.615 0.00 0.00 0.00 2.71
654 1031 7.770433 TGGACTTTGAGGATGAATAGTAACATG 59.230 37.037 0.00 0.00 0.00 3.21
655 1032 7.770897 GGACTTTGAGGATGAATAGTAACATGT 59.229 37.037 0.00 0.00 0.00 3.21
656 1033 8.498054 ACTTTGAGGATGAATAGTAACATGTG 57.502 34.615 0.00 0.00 0.00 3.21
657 1034 8.103305 ACTTTGAGGATGAATAGTAACATGTGT 58.897 33.333 0.00 0.00 0.00 3.72
658 1035 8.862325 TTTGAGGATGAATAGTAACATGTGTT 57.138 30.769 0.00 3.64 41.73 3.32
659 1036 9.952030 TTTGAGGATGAATAGTAACATGTGTTA 57.048 29.630 0.00 1.62 39.31 2.41
660 1037 9.952030 TTGAGGATGAATAGTAACATGTGTTAA 57.048 29.630 0.00 0.00 41.58 2.01
661 1038 9.952030 TGAGGATGAATAGTAACATGTGTTAAA 57.048 29.630 0.00 0.47 41.58 1.52
664 1041 9.485591 GGATGAATAGTAACATGTGTTAAAACG 57.514 33.333 0.00 0.00 41.58 3.60
665 1042 8.889849 ATGAATAGTAACATGTGTTAAAACGC 57.110 30.769 0.00 0.00 41.58 4.84
666 1043 7.299586 TGAATAGTAACATGTGTTAAAACGCC 58.700 34.615 0.00 0.00 41.58 5.68
667 1044 7.173562 TGAATAGTAACATGTGTTAAAACGCCT 59.826 33.333 0.00 2.84 41.58 5.52
668 1045 5.352643 AGTAACATGTGTTAAAACGCCTC 57.647 39.130 0.00 0.00 41.58 4.70
669 1046 4.817464 AGTAACATGTGTTAAAACGCCTCA 59.183 37.500 0.00 0.00 41.58 3.86
670 1047 3.896648 ACATGTGTTAAAACGCCTCAG 57.103 42.857 0.00 0.00 38.61 3.35
671 1048 3.472652 ACATGTGTTAAAACGCCTCAGA 58.527 40.909 0.00 0.00 38.61 3.27
672 1049 4.072131 ACATGTGTTAAAACGCCTCAGAT 58.928 39.130 0.00 0.00 38.61 2.90
673 1050 4.518970 ACATGTGTTAAAACGCCTCAGATT 59.481 37.500 0.00 0.00 38.61 2.40
674 1051 5.009610 ACATGTGTTAAAACGCCTCAGATTT 59.990 36.000 0.00 0.00 38.61 2.17
675 1052 4.854399 TGTGTTAAAACGCCTCAGATTTG 58.146 39.130 4.09 0.00 38.61 2.32
676 1053 4.336993 TGTGTTAAAACGCCTCAGATTTGT 59.663 37.500 4.09 0.00 38.61 2.83
677 1054 4.909880 GTGTTAAAACGCCTCAGATTTGTC 59.090 41.667 0.00 0.00 33.44 3.18
678 1055 4.819630 TGTTAAAACGCCTCAGATTTGTCT 59.180 37.500 0.00 0.00 0.00 3.41
679 1056 5.298276 TGTTAAAACGCCTCAGATTTGTCTT 59.702 36.000 0.00 0.00 0.00 3.01
680 1057 4.918810 AAAACGCCTCAGATTTGTCTTT 57.081 36.364 0.00 0.00 0.00 2.52
681 1058 4.918810 AAACGCCTCAGATTTGTCTTTT 57.081 36.364 0.00 0.00 0.00 2.27
682 1059 4.918810 AACGCCTCAGATTTGTCTTTTT 57.081 36.364 0.00 0.00 0.00 1.94
700 1077 3.815856 TTTTGCACAGCCTTCATTTCA 57.184 38.095 0.00 0.00 0.00 2.69
701 1078 3.815856 TTTGCACAGCCTTCATTTCAA 57.184 38.095 0.00 0.00 0.00 2.69
702 1079 2.798976 TGCACAGCCTTCATTTCAAC 57.201 45.000 0.00 0.00 0.00 3.18
703 1080 1.001487 TGCACAGCCTTCATTTCAACG 60.001 47.619 0.00 0.00 0.00 4.10
704 1081 1.001378 GCACAGCCTTCATTTCAACGT 60.001 47.619 0.00 0.00 0.00 3.99
705 1082 2.225491 GCACAGCCTTCATTTCAACGTA 59.775 45.455 0.00 0.00 0.00 3.57
706 1083 3.119849 GCACAGCCTTCATTTCAACGTAT 60.120 43.478 0.00 0.00 0.00 3.06
707 1084 4.615912 GCACAGCCTTCATTTCAACGTATT 60.616 41.667 0.00 0.00 0.00 1.89
708 1085 5.460646 CACAGCCTTCATTTCAACGTATTT 58.539 37.500 0.00 0.00 0.00 1.40
709 1086 5.569059 CACAGCCTTCATTTCAACGTATTTC 59.431 40.000 0.00 0.00 0.00 2.17
710 1087 4.788100 CAGCCTTCATTTCAACGTATTTCG 59.212 41.667 0.00 0.00 46.00 3.46
728 1105 9.043678 CGTATTTCGTCCTAAAAATTTACACAC 57.956 33.333 0.00 0.00 34.52 3.82
729 1106 9.881529 GTATTTCGTCCTAAAAATTTACACACA 57.118 29.630 0.00 0.00 0.00 3.72
731 1108 8.789881 TTTCGTCCTAAAAATTTACACACATG 57.210 30.769 0.00 0.00 0.00 3.21
732 1109 7.499321 TCGTCCTAAAAATTTACACACATGT 57.501 32.000 0.00 0.00 43.30 3.21
746 1123 2.435422 CACATGTGTGTTATGCCTCCA 58.565 47.619 18.03 0.00 40.96 3.86
747 1124 3.018856 CACATGTGTGTTATGCCTCCAT 58.981 45.455 18.03 0.00 40.96 3.41
748 1125 4.198530 CACATGTGTGTTATGCCTCCATA 58.801 43.478 18.03 0.00 40.96 2.74
749 1126 4.823442 CACATGTGTGTTATGCCTCCATAT 59.177 41.667 18.03 0.00 40.96 1.78
750 1127 5.997129 CACATGTGTGTTATGCCTCCATATA 59.003 40.000 18.03 0.00 40.96 0.86
751 1128 6.656270 CACATGTGTGTTATGCCTCCATATAT 59.344 38.462 18.03 0.00 40.96 0.86
752 1129 7.823799 CACATGTGTGTTATGCCTCCATATATA 59.176 37.037 18.03 0.00 40.96 0.86
753 1130 8.551440 ACATGTGTGTTATGCCTCCATATATAT 58.449 33.333 0.00 0.00 34.01 0.86
754 1131 9.049523 CATGTGTGTTATGCCTCCATATATATC 57.950 37.037 0.00 0.00 34.10 1.63
755 1132 8.379428 TGTGTGTTATGCCTCCATATATATCT 57.621 34.615 0.00 0.00 34.10 1.98
756 1133 8.260114 TGTGTGTTATGCCTCCATATATATCTG 58.740 37.037 0.00 0.00 34.10 2.90
757 1134 8.260818 GTGTGTTATGCCTCCATATATATCTGT 58.739 37.037 0.00 0.00 34.10 3.41
758 1135 9.487442 TGTGTTATGCCTCCATATATATCTGTA 57.513 33.333 0.00 0.00 34.10 2.74
827 1204 9.943163 ATGAATTTTATGTTTTTCAAAAACCGG 57.057 25.926 20.61 0.00 32.35 5.28
828 1205 7.910683 TGAATTTTATGTTTTTCAAAAACCGGC 59.089 29.630 20.61 0.00 0.00 6.13
829 1206 5.736486 TTTATGTTTTTCAAAAACCGGCC 57.264 34.783 20.61 0.00 0.00 6.13
830 1207 3.552132 ATGTTTTTCAAAAACCGGCCT 57.448 38.095 20.61 0.88 0.00 5.19
831 1208 2.894902 TGTTTTTCAAAAACCGGCCTC 58.105 42.857 20.61 0.00 0.00 4.70
832 1209 2.206750 GTTTTTCAAAAACCGGCCTCC 58.793 47.619 13.93 0.00 0.00 4.30
833 1210 1.486211 TTTTCAAAAACCGGCCTCCA 58.514 45.000 0.00 0.00 0.00 3.86
834 1211 1.710816 TTTCAAAAACCGGCCTCCAT 58.289 45.000 0.00 0.00 0.00 3.41
835 1212 0.965439 TTCAAAAACCGGCCTCCATG 59.035 50.000 0.00 0.00 0.00 3.66
836 1213 0.111446 TCAAAAACCGGCCTCCATGA 59.889 50.000 0.00 0.00 0.00 3.07
837 1214 0.965439 CAAAAACCGGCCTCCATGAA 59.035 50.000 0.00 0.00 0.00 2.57
838 1215 1.067635 CAAAAACCGGCCTCCATGAAG 60.068 52.381 0.00 0.00 0.00 3.02
839 1216 0.611896 AAAACCGGCCTCCATGAAGG 60.612 55.000 0.00 0.00 39.62 3.46
845 1222 2.203126 CCTCCATGAAGGCCGAGC 60.203 66.667 0.00 0.00 37.29 5.03
846 1223 2.739996 CCTCCATGAAGGCCGAGCT 61.740 63.158 0.00 0.00 37.29 4.09
847 1224 1.227497 CTCCATGAAGGCCGAGCTC 60.227 63.158 2.73 2.73 37.29 4.09
848 1225 2.203126 CCATGAAGGCCGAGCTCC 60.203 66.667 8.47 0.00 0.00 4.70
849 1226 2.586245 CATGAAGGCCGAGCTCCA 59.414 61.111 8.47 0.00 0.00 3.86
850 1227 1.078214 CATGAAGGCCGAGCTCCAA 60.078 57.895 8.47 0.00 0.00 3.53
851 1228 0.677731 CATGAAGGCCGAGCTCCAAA 60.678 55.000 8.47 0.00 0.00 3.28
852 1229 0.038166 ATGAAGGCCGAGCTCCAAAA 59.962 50.000 8.47 0.00 0.00 2.44
853 1230 0.606401 TGAAGGCCGAGCTCCAAAAG 60.606 55.000 8.47 0.00 0.00 2.27
854 1231 1.303643 AAGGCCGAGCTCCAAAAGG 60.304 57.895 8.47 4.02 0.00 3.11
855 1232 3.443925 GGCCGAGCTCCAAAAGGC 61.444 66.667 18.28 18.28 46.51 4.35
856 1233 2.672996 GCCGAGCTCCAAAAGGCA 60.673 61.111 20.71 0.00 46.48 4.75
857 1234 2.048603 GCCGAGCTCCAAAAGGCAT 61.049 57.895 20.71 0.00 46.48 4.40
858 1235 1.598701 GCCGAGCTCCAAAAGGCATT 61.599 55.000 20.71 0.00 46.48 3.56
859 1236 0.890683 CCGAGCTCCAAAAGGCATTT 59.109 50.000 8.47 0.00 0.00 2.32
860 1237 1.273327 CCGAGCTCCAAAAGGCATTTT 59.727 47.619 8.47 2.67 39.22 1.82
861 1238 2.599659 CGAGCTCCAAAAGGCATTTTC 58.400 47.619 6.03 0.00 36.47 2.29
862 1239 2.599659 GAGCTCCAAAAGGCATTTTCG 58.400 47.619 6.03 0.00 36.47 3.46
863 1240 1.273327 AGCTCCAAAAGGCATTTTCGG 59.727 47.619 6.03 11.56 36.47 4.30
864 1241 1.272212 GCTCCAAAAGGCATTTTCGGA 59.728 47.619 19.42 19.42 36.47 4.55
865 1242 2.926586 GCTCCAAAAGGCATTTTCGGAC 60.927 50.000 17.78 13.14 36.47 4.79
866 1243 1.616374 TCCAAAAGGCATTTTCGGACC 59.384 47.619 17.78 0.00 36.47 4.46
867 1244 1.342819 CCAAAAGGCATTTTCGGACCA 59.657 47.619 6.03 0.00 36.47 4.02
868 1245 2.028203 CCAAAAGGCATTTTCGGACCAT 60.028 45.455 6.03 0.00 36.47 3.55
869 1246 3.194542 CCAAAAGGCATTTTCGGACCATA 59.805 43.478 6.03 0.00 36.47 2.74
870 1247 4.423732 CAAAAGGCATTTTCGGACCATAG 58.576 43.478 6.03 0.00 36.47 2.23
871 1248 2.348411 AGGCATTTTCGGACCATAGG 57.652 50.000 0.00 0.00 0.00 2.57
872 1249 0.668535 GGCATTTTCGGACCATAGGC 59.331 55.000 0.00 0.00 0.00 3.93
873 1250 0.668535 GCATTTTCGGACCATAGGCC 59.331 55.000 0.00 0.00 0.00 5.19
874 1251 1.750682 GCATTTTCGGACCATAGGCCT 60.751 52.381 11.78 11.78 0.00 5.19
875 1252 2.222027 CATTTTCGGACCATAGGCCTC 58.778 52.381 9.68 0.00 0.00 4.70
876 1253 1.580059 TTTTCGGACCATAGGCCTCT 58.420 50.000 9.68 0.00 0.00 3.69
877 1254 1.580059 TTTCGGACCATAGGCCTCTT 58.420 50.000 9.68 0.00 0.00 2.85
878 1255 1.580059 TTCGGACCATAGGCCTCTTT 58.420 50.000 9.68 0.00 0.00 2.52
879 1256 1.580059 TCGGACCATAGGCCTCTTTT 58.420 50.000 9.68 0.00 0.00 2.27
922 1299 3.629398 CCCAAATAGAGCATCCAAGTCAC 59.371 47.826 0.00 0.00 33.66 3.67
923 1300 3.310774 CCAAATAGAGCATCCAAGTCACG 59.689 47.826 0.00 0.00 33.66 4.35
925 1302 4.471904 AATAGAGCATCCAAGTCACGAA 57.528 40.909 0.00 0.00 33.66 3.85
926 1303 2.839486 AGAGCATCCAAGTCACGAAA 57.161 45.000 0.00 0.00 33.66 3.46
927 1304 3.126001 AGAGCATCCAAGTCACGAAAA 57.874 42.857 0.00 0.00 33.66 2.29
928 1305 3.476552 AGAGCATCCAAGTCACGAAAAA 58.523 40.909 0.00 0.00 33.66 1.94
945 1322 2.881111 AAAAAGACACCCTAGCCCTC 57.119 50.000 0.00 0.00 0.00 4.30
946 1323 1.742308 AAAAGACACCCTAGCCCTCA 58.258 50.000 0.00 0.00 0.00 3.86
947 1324 1.280457 AAAGACACCCTAGCCCTCAG 58.720 55.000 0.00 0.00 0.00 3.35
948 1325 0.413832 AAGACACCCTAGCCCTCAGA 59.586 55.000 0.00 0.00 0.00 3.27
949 1326 0.413832 AGACACCCTAGCCCTCAGAA 59.586 55.000 0.00 0.00 0.00 3.02
950 1327 1.203313 AGACACCCTAGCCCTCAGAAA 60.203 52.381 0.00 0.00 0.00 2.52
951 1328 1.628846 GACACCCTAGCCCTCAGAAAA 59.371 52.381 0.00 0.00 0.00 2.29
952 1329 2.039879 GACACCCTAGCCCTCAGAAAAA 59.960 50.000 0.00 0.00 0.00 1.94
1120 1530 2.287069 ACGCTTATGTTCCTCTCGATCG 60.287 50.000 9.36 9.36 0.00 3.69
1186 1597 2.046314 CAAGGTAGGCGTGGTGGG 60.046 66.667 0.00 0.00 0.00 4.61
1365 1776 2.584835 TCCTCCACACATTCCTTTGG 57.415 50.000 0.00 0.00 0.00 3.28
1400 1830 1.565759 AGGCTTGATATGGTTGCTGGA 59.434 47.619 0.00 0.00 0.00 3.86
1450 1882 7.138081 TCGTCGTGTAATTGTAGAGTTTGTTA 58.862 34.615 0.00 0.00 0.00 2.41
1509 1941 4.765339 AGAGCAATTGGGTTAGTTTGGTAC 59.235 41.667 7.72 0.00 30.61 3.34
1529 1961 7.302948 TGGTACTAGATGGTTCCTGTGTATAT 58.697 38.462 0.00 0.00 0.00 0.86
1543 1983 8.011844 TCCTGTGTATATATGATGCCTGATAC 57.988 38.462 0.00 0.00 0.00 2.24
1544 1984 7.619302 TCCTGTGTATATATGATGCCTGATACA 59.381 37.037 0.00 0.00 0.00 2.29
1553 1993 6.931790 ATGATGCCTGATACATAACTCTCT 57.068 37.500 0.00 0.00 0.00 3.10
1554 1994 6.094193 TGATGCCTGATACATAACTCTCTG 57.906 41.667 0.00 0.00 0.00 3.35
1644 2237 1.467734 CTGATGCACTGAACTGGCTTC 59.532 52.381 0.00 0.00 33.70 3.86
1768 2361 7.041030 TGTCGGATGTTTCAATTGCTAGTAAAA 60.041 33.333 0.00 0.00 0.00 1.52
1769 2362 7.806014 GTCGGATGTTTCAATTGCTAGTAAAAA 59.194 33.333 0.00 0.00 0.00 1.94
1781 2374 4.868171 TGCTAGTAAAAATACCGTGAGCAG 59.132 41.667 0.00 0.00 32.75 4.24
1806 2399 7.878127 AGTTTTCTAAATAACAGCAGCTAGACA 59.122 33.333 0.00 0.00 0.00 3.41
1849 2442 5.530915 CGGCATTTCAGATATTCCAGGTTAA 59.469 40.000 0.00 0.00 0.00 2.01
1890 2483 1.815003 AGATGGTTTGCAGCTTGCTAC 59.185 47.619 9.12 7.29 45.31 3.58
1891 2484 0.523072 ATGGTTTGCAGCTTGCTACG 59.477 50.000 9.12 0.00 45.31 3.51
1893 2486 1.282570 GTTTGCAGCTTGCTACGCA 59.717 52.632 9.12 3.93 45.31 5.24
1924 2517 6.488344 TGCCATTGTTAACATTTACTGTGAGA 59.512 34.615 9.56 0.00 38.39 3.27
1971 2717 8.635765 AGCTATGTTTCCTCTGTTTAATTTCA 57.364 30.769 0.00 0.00 0.00 2.69
2222 2979 2.550830 AGTGGCGTTCTTGATCTTGT 57.449 45.000 0.00 0.00 0.00 3.16
2402 3166 5.072741 AGCACATGTGTTAATTTGTCTCCT 58.927 37.500 26.01 7.72 0.00 3.69
2469 3968 2.093181 TGTGCGTAGGCTGATTAACCAT 60.093 45.455 9.11 0.00 40.82 3.55
2509 4008 9.042008 GTTGACACTGTATTTGAGTCTTTCTAA 57.958 33.333 0.00 0.00 0.00 2.10
2576 4101 3.441101 AGTGCTACATTGTACTCCCTCA 58.559 45.455 0.00 0.00 0.00 3.86
2588 4113 9.046296 CATTGTACTCCCTCAGTATCAAAATAC 57.954 37.037 0.00 0.00 39.90 1.89
2873 5799 6.072112 TCCTATGTGTTTTCTTGCTGAAAC 57.928 37.500 5.24 2.55 43.55 2.78
2927 5853 6.715280 TCTCTACAGATTTTGCAAGATTCCT 58.285 36.000 3.69 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.527568 TCGACCAACCTAAATAAACCAAATT 57.472 32.000 0.00 0.00 0.00 1.82
29 30 7.527568 TTCGACCAACCTAAATAAACCAAAT 57.472 32.000 0.00 0.00 0.00 2.32
30 31 6.956202 TTCGACCAACCTAAATAAACCAAA 57.044 33.333 0.00 0.00 0.00 3.28
31 32 6.956202 TTTCGACCAACCTAAATAAACCAA 57.044 33.333 0.00 0.00 0.00 3.67
32 33 6.715718 TCATTTCGACCAACCTAAATAAACCA 59.284 34.615 0.00 0.00 0.00 3.67
47 48 5.584649 TGTCAATGGAAGTATCATTTCGACC 59.415 40.000 0.00 0.00 33.08 4.79
121 122 9.618890 ATTGCAATAAGTCTGTGACTATACAAT 57.381 29.630 11.02 5.11 42.59 2.71
127 504 7.278646 GTGATCATTGCAATAAGTCTGTGACTA 59.721 37.037 12.53 0.00 42.59 2.59
133 510 6.765036 ACCTAGTGATCATTGCAATAAGTCTG 59.235 38.462 12.53 0.00 0.00 3.51
136 513 8.486210 TCTTACCTAGTGATCATTGCAATAAGT 58.514 33.333 12.53 0.57 0.00 2.24
141 518 7.217200 GGTATCTTACCTAGTGATCATTGCAA 58.783 38.462 0.00 0.00 45.52 4.08
157 534 5.690857 GCACCAACTTCTATCGGTATCTTAC 59.309 44.000 0.00 0.00 0.00 2.34
163 540 2.093890 TCGCACCAACTTCTATCGGTA 58.906 47.619 0.00 0.00 0.00 4.02
166 543 1.990799 TGTCGCACCAACTTCTATCG 58.009 50.000 0.00 0.00 0.00 2.92
175 552 1.269517 GCTCCAATTTTGTCGCACCAA 60.270 47.619 0.00 0.00 0.00 3.67
179 556 1.578926 CCGCTCCAATTTTGTCGCA 59.421 52.632 0.00 0.00 0.00 5.10
203 580 8.731275 ATATATGAACGGACACAAATTTCTCA 57.269 30.769 0.00 0.00 0.00 3.27
213 590 8.223177 AGCCTACTATATATATGAACGGACAC 57.777 38.462 5.44 0.00 0.00 3.67
217 594 8.198109 AGCAAAGCCTACTATATATATGAACGG 58.802 37.037 5.44 2.76 0.00 4.44
230 607 4.905429 TCAAACATGAGCAAAGCCTACTA 58.095 39.130 0.00 0.00 0.00 1.82
264 641 5.927689 ACCGACAAGTAAAACGATTACATGA 59.072 36.000 19.78 0.00 30.72 3.07
270 647 4.753107 ACATGACCGACAAGTAAAACGATT 59.247 37.500 0.00 0.00 0.00 3.34
273 650 5.579384 TTACATGACCGACAAGTAAAACG 57.421 39.130 0.00 0.00 38.92 3.60
287 664 7.667043 TGTTACATCCTCAAGTTTACATGAC 57.333 36.000 0.00 0.00 0.00 3.06
325 702 9.530633 TTTTTACCTACGCATTGTTACATTTTT 57.469 25.926 0.00 0.00 0.00 1.94
326 703 9.699703 ATTTTTACCTACGCATTGTTACATTTT 57.300 25.926 0.00 0.00 0.00 1.82
327 704 9.349145 GATTTTTACCTACGCATTGTTACATTT 57.651 29.630 0.00 0.00 0.00 2.32
328 705 8.516234 TGATTTTTACCTACGCATTGTTACATT 58.484 29.630 0.00 0.00 0.00 2.71
329 706 8.046294 TGATTTTTACCTACGCATTGTTACAT 57.954 30.769 0.00 0.00 0.00 2.29
330 707 7.436430 TGATTTTTACCTACGCATTGTTACA 57.564 32.000 0.00 0.00 0.00 2.41
331 708 7.431084 CCATGATTTTTACCTACGCATTGTTAC 59.569 37.037 0.00 0.00 0.00 2.50
332 709 7.121463 ACCATGATTTTTACCTACGCATTGTTA 59.879 33.333 0.00 0.00 0.00 2.41
333 710 6.071616 ACCATGATTTTTACCTACGCATTGTT 60.072 34.615 0.00 0.00 0.00 2.83
334 711 5.417580 ACCATGATTTTTACCTACGCATTGT 59.582 36.000 0.00 0.00 0.00 2.71
335 712 5.890334 ACCATGATTTTTACCTACGCATTG 58.110 37.500 0.00 0.00 0.00 2.82
336 713 5.650266 TGACCATGATTTTTACCTACGCATT 59.350 36.000 0.00 0.00 0.00 3.56
395 772 6.865834 AGAGGCTTATGGTATAATCTCTGG 57.134 41.667 0.00 0.00 0.00 3.86
422 799 3.581332 ACTCCCTATGGTCGTCTCAAAAA 59.419 43.478 0.00 0.00 0.00 1.94
423 800 3.170717 ACTCCCTATGGTCGTCTCAAAA 58.829 45.455 0.00 0.00 0.00 2.44
424 801 2.816411 ACTCCCTATGGTCGTCTCAAA 58.184 47.619 0.00 0.00 0.00 2.69
425 802 2.526888 ACTCCCTATGGTCGTCTCAA 57.473 50.000 0.00 0.00 0.00 3.02
426 803 2.158652 CCTACTCCCTATGGTCGTCTCA 60.159 54.545 0.00 0.00 0.00 3.27
427 804 2.506444 CCTACTCCCTATGGTCGTCTC 58.494 57.143 0.00 0.00 0.00 3.36
428 805 1.145325 CCCTACTCCCTATGGTCGTCT 59.855 57.143 0.00 0.00 0.00 4.18
429 806 1.618487 CCCTACTCCCTATGGTCGTC 58.382 60.000 0.00 0.00 0.00 4.20
430 807 0.469518 GCCCTACTCCCTATGGTCGT 60.470 60.000 0.00 0.00 0.00 4.34
431 808 1.524863 CGCCCTACTCCCTATGGTCG 61.525 65.000 0.00 0.00 0.00 4.79
432 809 0.469518 ACGCCCTACTCCCTATGGTC 60.470 60.000 0.00 0.00 0.00 4.02
433 810 0.031414 AACGCCCTACTCCCTATGGT 60.031 55.000 0.00 0.00 0.00 3.55
434 811 1.129058 AAACGCCCTACTCCCTATGG 58.871 55.000 0.00 0.00 0.00 2.74
435 812 2.561569 CAAAACGCCCTACTCCCTATG 58.438 52.381 0.00 0.00 0.00 2.23
436 813 1.489230 CCAAAACGCCCTACTCCCTAT 59.511 52.381 0.00 0.00 0.00 2.57
437 814 0.906775 CCAAAACGCCCTACTCCCTA 59.093 55.000 0.00 0.00 0.00 3.53
438 815 1.131928 ACCAAAACGCCCTACTCCCT 61.132 55.000 0.00 0.00 0.00 4.20
439 816 0.958876 CACCAAAACGCCCTACTCCC 60.959 60.000 0.00 0.00 0.00 4.30
440 817 0.035739 TCACCAAAACGCCCTACTCC 59.964 55.000 0.00 0.00 0.00 3.85
441 818 1.154197 GTCACCAAAACGCCCTACTC 58.846 55.000 0.00 0.00 0.00 2.59
442 819 0.250597 GGTCACCAAAACGCCCTACT 60.251 55.000 0.00 0.00 0.00 2.57
443 820 1.571215 CGGTCACCAAAACGCCCTAC 61.571 60.000 0.00 0.00 0.00 3.18
444 821 1.301874 CGGTCACCAAAACGCCCTA 60.302 57.895 0.00 0.00 0.00 3.53
445 822 2.593436 CGGTCACCAAAACGCCCT 60.593 61.111 0.00 0.00 0.00 5.19
446 823 2.592287 TCGGTCACCAAAACGCCC 60.592 61.111 0.00 0.00 0.00 6.13
447 824 2.943653 CTCGGTCACCAAAACGCC 59.056 61.111 0.00 0.00 0.00 5.68
448 825 2.171489 GAGCTCGGTCACCAAAACGC 62.171 60.000 0.00 0.00 0.00 4.84
449 826 1.566018 GGAGCTCGGTCACCAAAACG 61.566 60.000 7.83 0.00 0.00 3.60
450 827 0.534203 TGGAGCTCGGTCACCAAAAC 60.534 55.000 7.83 0.00 0.00 2.43
451 828 0.400213 ATGGAGCTCGGTCACCAAAA 59.600 50.000 7.83 0.00 36.00 2.44
452 829 0.321564 CATGGAGCTCGGTCACCAAA 60.322 55.000 7.83 0.00 36.00 3.28
453 830 1.191489 TCATGGAGCTCGGTCACCAA 61.191 55.000 7.83 0.00 36.00 3.67
454 831 1.191489 TTCATGGAGCTCGGTCACCA 61.191 55.000 7.83 0.00 36.83 4.17
455 832 0.460987 CTTCATGGAGCTCGGTCACC 60.461 60.000 7.83 0.00 0.00 4.02
456 833 1.086634 GCTTCATGGAGCTCGGTCAC 61.087 60.000 19.38 0.00 39.57 3.67
457 834 1.219124 GCTTCATGGAGCTCGGTCA 59.781 57.895 19.38 0.00 39.57 4.02
458 835 1.522580 GGCTTCATGGAGCTCGGTC 60.523 63.158 25.16 4.65 42.32 4.79
459 836 2.586792 GGCTTCATGGAGCTCGGT 59.413 61.111 25.16 0.00 42.32 4.69
460 837 2.203126 GGGCTTCATGGAGCTCGG 60.203 66.667 25.16 0.00 42.32 4.63
462 839 2.717639 TAAAGGGCTTCATGGAGCTC 57.282 50.000 25.16 22.36 43.65 4.09
463 840 3.677156 AATAAAGGGCTTCATGGAGCT 57.323 42.857 25.16 8.32 42.32 4.09
464 841 4.743057 AAAATAAAGGGCTTCATGGAGC 57.257 40.909 18.45 18.45 41.96 4.70
465 842 6.284891 TCAAAAATAAAGGGCTTCATGGAG 57.715 37.500 0.00 0.00 0.00 3.86
466 843 6.678568 TTCAAAAATAAAGGGCTTCATGGA 57.321 33.333 0.00 0.00 0.00 3.41
467 844 7.742556 TTTTCAAAAATAAAGGGCTTCATGG 57.257 32.000 0.00 0.00 0.00 3.66
470 847 9.401058 TGAATTTTTCAAAAATAAAGGGCTTCA 57.599 25.926 8.55 4.56 36.59 3.02
531 908 9.719355 TCATCCGTGTATAGTTGCATATTTATT 57.281 29.630 0.00 0.00 0.00 1.40
532 909 9.371136 CTCATCCGTGTATAGTTGCATATTTAT 57.629 33.333 0.00 0.00 0.00 1.40
533 910 8.581578 TCTCATCCGTGTATAGTTGCATATTTA 58.418 33.333 0.00 0.00 0.00 1.40
534 911 7.441836 TCTCATCCGTGTATAGTTGCATATTT 58.558 34.615 0.00 0.00 0.00 1.40
535 912 6.993079 TCTCATCCGTGTATAGTTGCATATT 58.007 36.000 0.00 0.00 0.00 1.28
536 913 6.590234 TCTCATCCGTGTATAGTTGCATAT 57.410 37.500 0.00 0.00 0.00 1.78
537 914 6.015434 ACATCTCATCCGTGTATAGTTGCATA 60.015 38.462 0.00 0.00 0.00 3.14
538 915 4.937201 TCTCATCCGTGTATAGTTGCAT 57.063 40.909 0.00 0.00 0.00 3.96
539 916 4.099419 ACATCTCATCCGTGTATAGTTGCA 59.901 41.667 0.00 0.00 0.00 4.08
540 917 4.621991 ACATCTCATCCGTGTATAGTTGC 58.378 43.478 0.00 0.00 0.00 4.17
541 918 7.327032 CACATACATCTCATCCGTGTATAGTTG 59.673 40.741 0.00 0.00 37.04 3.16
542 919 7.014326 ACACATACATCTCATCCGTGTATAGTT 59.986 37.037 0.00 0.00 37.04 2.24
543 920 6.490381 ACACATACATCTCATCCGTGTATAGT 59.510 38.462 0.00 0.00 37.04 2.12
544 921 6.803807 CACACATACATCTCATCCGTGTATAG 59.196 42.308 0.00 0.00 37.04 1.31
545 922 6.264518 ACACACATACATCTCATCCGTGTATA 59.735 38.462 0.00 0.00 37.04 1.47
546 923 5.069119 ACACACATACATCTCATCCGTGTAT 59.931 40.000 0.00 0.00 39.05 2.29
547 924 4.401202 ACACACATACATCTCATCCGTGTA 59.599 41.667 0.00 0.00 34.55 2.90
548 925 3.195610 ACACACATACATCTCATCCGTGT 59.804 43.478 0.00 0.00 36.61 4.49
549 926 3.553105 CACACACATACATCTCATCCGTG 59.447 47.826 0.00 0.00 0.00 4.94
550 927 3.195610 ACACACACATACATCTCATCCGT 59.804 43.478 0.00 0.00 0.00 4.69
551 928 3.785486 ACACACACATACATCTCATCCG 58.215 45.455 0.00 0.00 0.00 4.18
552 929 7.609760 TTTTACACACACATACATCTCATCC 57.390 36.000 0.00 0.00 0.00 3.51
555 932 9.061435 TGAATTTTTACACACACATACATCTCA 57.939 29.630 0.00 0.00 0.00 3.27
556 933 9.891828 TTGAATTTTTACACACACATACATCTC 57.108 29.630 0.00 0.00 0.00 2.75
557 934 9.897744 CTTGAATTTTTACACACACATACATCT 57.102 29.630 0.00 0.00 0.00 2.90
558 935 9.891828 TCTTGAATTTTTACACACACATACATC 57.108 29.630 0.00 0.00 0.00 3.06
560 937 9.676195 CATCTTGAATTTTTACACACACATACA 57.324 29.630 0.00 0.00 0.00 2.29
561 938 9.891828 TCATCTTGAATTTTTACACACACATAC 57.108 29.630 0.00 0.00 0.00 2.39
563 940 9.814899 TTTCATCTTGAATTTTTACACACACAT 57.185 25.926 0.00 0.00 36.11 3.21
564 941 9.814899 ATTTCATCTTGAATTTTTACACACACA 57.185 25.926 0.00 0.00 36.11 3.72
576 953 9.294030 GCATTTCGAAGTATTTCATCTTGAATT 57.706 29.630 0.00 0.00 36.11 2.17
577 954 7.641411 CGCATTTCGAAGTATTTCATCTTGAAT 59.359 33.333 0.00 0.00 41.67 2.57
578 955 6.960992 CGCATTTCGAAGTATTTCATCTTGAA 59.039 34.615 0.00 0.00 41.67 2.69
579 956 6.312672 TCGCATTTCGAAGTATTTCATCTTGA 59.687 34.615 0.00 0.00 45.36 3.02
580 957 6.477742 TCGCATTTCGAAGTATTTCATCTTG 58.522 36.000 0.00 0.00 45.36 3.02
581 958 6.662414 TCGCATTTCGAAGTATTTCATCTT 57.338 33.333 0.00 0.00 45.36 2.40
613 990 7.765819 CCTCAAAGTCCAGAAATTTGTCTTTTT 59.234 33.333 0.00 0.00 35.80 1.94
614 991 7.124147 TCCTCAAAGTCCAGAAATTTGTCTTTT 59.876 33.333 0.00 0.00 35.80 2.27
615 992 6.607198 TCCTCAAAGTCCAGAAATTTGTCTTT 59.393 34.615 0.00 0.00 35.80 2.52
616 993 6.129179 TCCTCAAAGTCCAGAAATTTGTCTT 58.871 36.000 0.00 0.00 35.80 3.01
617 994 5.694995 TCCTCAAAGTCCAGAAATTTGTCT 58.305 37.500 0.00 0.00 35.80 3.41
618 995 6.207417 TCATCCTCAAAGTCCAGAAATTTGTC 59.793 38.462 0.00 0.00 35.80 3.18
619 996 6.070656 TCATCCTCAAAGTCCAGAAATTTGT 58.929 36.000 0.00 0.00 35.80 2.83
620 997 6.579666 TCATCCTCAAAGTCCAGAAATTTG 57.420 37.500 0.00 0.00 35.68 2.32
621 998 7.787623 ATTCATCCTCAAAGTCCAGAAATTT 57.212 32.000 0.00 0.00 0.00 1.82
622 999 8.112183 ACTATTCATCCTCAAAGTCCAGAAATT 58.888 33.333 0.00 0.00 0.00 1.82
623 1000 7.637511 ACTATTCATCCTCAAAGTCCAGAAAT 58.362 34.615 0.00 0.00 0.00 2.17
624 1001 7.020827 ACTATTCATCCTCAAAGTCCAGAAA 57.979 36.000 0.00 0.00 0.00 2.52
625 1002 6.627087 ACTATTCATCCTCAAAGTCCAGAA 57.373 37.500 0.00 0.00 0.00 3.02
626 1003 7.180229 TGTTACTATTCATCCTCAAAGTCCAGA 59.820 37.037 0.00 0.00 0.00 3.86
627 1004 7.331026 TGTTACTATTCATCCTCAAAGTCCAG 58.669 38.462 0.00 0.00 0.00 3.86
628 1005 7.252612 TGTTACTATTCATCCTCAAAGTCCA 57.747 36.000 0.00 0.00 0.00 4.02
629 1006 7.770897 ACATGTTACTATTCATCCTCAAAGTCC 59.229 37.037 0.00 0.00 0.00 3.85
630 1007 8.607459 CACATGTTACTATTCATCCTCAAAGTC 58.393 37.037 0.00 0.00 0.00 3.01
631 1008 8.103305 ACACATGTTACTATTCATCCTCAAAGT 58.897 33.333 0.00 0.00 0.00 2.66
632 1009 8.498054 ACACATGTTACTATTCATCCTCAAAG 57.502 34.615 0.00 0.00 0.00 2.77
633 1010 8.862325 AACACATGTTACTATTCATCCTCAAA 57.138 30.769 0.00 0.00 36.32 2.69
634 1011 9.952030 TTAACACATGTTACTATTCATCCTCAA 57.048 29.630 3.95 0.00 39.92 3.02
635 1012 9.952030 TTTAACACATGTTACTATTCATCCTCA 57.048 29.630 3.95 0.00 39.92 3.86
638 1015 9.485591 CGTTTTAACACATGTTACTATTCATCC 57.514 33.333 3.95 0.00 39.92 3.51
639 1016 8.995906 GCGTTTTAACACATGTTACTATTCATC 58.004 33.333 3.95 0.00 39.92 2.92
640 1017 7.966204 GGCGTTTTAACACATGTTACTATTCAT 59.034 33.333 3.95 0.00 39.92 2.57
641 1018 7.173562 AGGCGTTTTAACACATGTTACTATTCA 59.826 33.333 3.95 0.00 39.92 2.57
642 1019 7.524065 AGGCGTTTTAACACATGTTACTATTC 58.476 34.615 3.95 0.00 39.92 1.75
643 1020 7.173562 TGAGGCGTTTTAACACATGTTACTATT 59.826 33.333 3.95 0.00 39.92 1.73
644 1021 6.651643 TGAGGCGTTTTAACACATGTTACTAT 59.348 34.615 3.95 0.00 39.92 2.12
645 1022 5.990386 TGAGGCGTTTTAACACATGTTACTA 59.010 36.000 3.95 0.00 39.92 1.82
646 1023 4.817464 TGAGGCGTTTTAACACATGTTACT 59.183 37.500 3.95 0.00 39.92 2.24
647 1024 5.049954 TCTGAGGCGTTTTAACACATGTTAC 60.050 40.000 3.95 0.00 39.92 2.50
648 1025 5.057819 TCTGAGGCGTTTTAACACATGTTA 58.942 37.500 0.00 0.22 39.31 2.41
649 1026 3.880490 TCTGAGGCGTTTTAACACATGTT 59.120 39.130 0.00 2.32 41.73 2.71
650 1027 3.472652 TCTGAGGCGTTTTAACACATGT 58.527 40.909 0.00 0.00 0.00 3.21
651 1028 4.685169 ATCTGAGGCGTTTTAACACATG 57.315 40.909 0.00 0.00 0.00 3.21
652 1029 5.009610 ACAAATCTGAGGCGTTTTAACACAT 59.990 36.000 0.00 0.00 0.00 3.21
653 1030 4.336993 ACAAATCTGAGGCGTTTTAACACA 59.663 37.500 0.00 0.00 0.00 3.72
654 1031 4.855531 ACAAATCTGAGGCGTTTTAACAC 58.144 39.130 0.00 0.00 0.00 3.32
655 1032 4.819630 AGACAAATCTGAGGCGTTTTAACA 59.180 37.500 0.00 0.00 32.29 2.41
656 1033 5.358298 AGACAAATCTGAGGCGTTTTAAC 57.642 39.130 0.00 0.00 32.29 2.01
657 1034 6.385649 AAAGACAAATCTGAGGCGTTTTAA 57.614 33.333 0.00 0.00 34.48 1.52
658 1035 6.385649 AAAAGACAAATCTGAGGCGTTTTA 57.614 33.333 0.00 0.00 34.48 1.52
659 1036 4.918810 AAAGACAAATCTGAGGCGTTTT 57.081 36.364 0.00 0.00 34.48 2.43
660 1037 4.918810 AAAAGACAAATCTGAGGCGTTT 57.081 36.364 0.00 0.00 34.48 3.60
661 1038 4.918810 AAAAAGACAAATCTGAGGCGTT 57.081 36.364 0.00 0.00 34.48 4.84
679 1056 4.134379 TGAAATGAAGGCTGTGCAAAAA 57.866 36.364 0.00 0.00 0.00 1.94
680 1057 3.815856 TGAAATGAAGGCTGTGCAAAA 57.184 38.095 0.00 0.00 0.00 2.44
681 1058 3.456280 GTTGAAATGAAGGCTGTGCAAA 58.544 40.909 0.00 0.00 0.00 3.68
682 1059 2.543445 CGTTGAAATGAAGGCTGTGCAA 60.543 45.455 0.00 0.00 0.00 4.08
683 1060 1.001487 CGTTGAAATGAAGGCTGTGCA 60.001 47.619 0.00 0.00 0.00 4.57
684 1061 1.001378 ACGTTGAAATGAAGGCTGTGC 60.001 47.619 0.00 0.00 0.00 4.57
685 1062 4.685169 ATACGTTGAAATGAAGGCTGTG 57.315 40.909 0.00 0.00 0.00 3.66
686 1063 5.616866 CGAAATACGTTGAAATGAAGGCTGT 60.617 40.000 0.00 0.00 37.22 4.40
687 1064 4.788100 CGAAATACGTTGAAATGAAGGCTG 59.212 41.667 0.00 0.00 37.22 4.85
688 1065 4.969816 CGAAATACGTTGAAATGAAGGCT 58.030 39.130 0.00 0.00 37.22 4.58
703 1080 9.881529 TGTGTGTAAATTTTTAGGACGAAATAC 57.118 29.630 0.00 0.00 0.00 1.89
705 1082 9.405587 CATGTGTGTAAATTTTTAGGACGAAAT 57.594 29.630 0.00 0.00 0.00 2.17
706 1083 8.407064 ACATGTGTGTAAATTTTTAGGACGAAA 58.593 29.630 0.00 0.00 36.63 3.46
707 1084 7.858382 CACATGTGTGTAAATTTTTAGGACGAA 59.142 33.333 18.03 0.00 40.96 3.85
708 1085 7.356540 CACATGTGTGTAAATTTTTAGGACGA 58.643 34.615 18.03 0.00 40.96 4.20
709 1086 7.547285 CACATGTGTGTAAATTTTTAGGACG 57.453 36.000 18.03 0.00 40.96 4.79
727 1104 2.877097 TGGAGGCATAACACACATGT 57.123 45.000 0.00 0.00 42.46 3.21
728 1105 8.969260 ATATATATGGAGGCATAACACACATG 57.031 34.615 0.00 0.00 0.00 3.21
729 1106 8.996655 AGATATATATGGAGGCATAACACACAT 58.003 33.333 0.00 0.00 0.00 3.21
730 1107 8.260114 CAGATATATATGGAGGCATAACACACA 58.740 37.037 0.00 0.00 0.00 3.72
731 1108 8.260818 ACAGATATATATGGAGGCATAACACAC 58.739 37.037 11.84 0.00 0.00 3.82
732 1109 8.379428 ACAGATATATATGGAGGCATAACACA 57.621 34.615 11.84 0.00 0.00 3.72
801 1178 9.943163 CCGGTTTTTGAAAAACATAAAATTCAT 57.057 25.926 28.24 0.00 35.34 2.57
802 1179 7.910683 GCCGGTTTTTGAAAAACATAAAATTCA 59.089 29.630 28.24 0.00 35.34 2.57
803 1180 7.377397 GGCCGGTTTTTGAAAAACATAAAATTC 59.623 33.333 28.24 12.10 35.34 2.17
804 1181 7.067615 AGGCCGGTTTTTGAAAAACATAAAATT 59.932 29.630 28.24 9.91 35.34 1.82
805 1182 6.544197 AGGCCGGTTTTTGAAAAACATAAAAT 59.456 30.769 28.24 11.51 35.34 1.82
806 1183 5.880887 AGGCCGGTTTTTGAAAAACATAAAA 59.119 32.000 28.24 0.00 35.34 1.52
807 1184 5.429130 AGGCCGGTTTTTGAAAAACATAAA 58.571 33.333 28.24 0.00 35.34 1.40
808 1185 5.024785 AGGCCGGTTTTTGAAAAACATAA 57.975 34.783 28.24 0.00 35.34 1.90
809 1186 4.501743 GGAGGCCGGTTTTTGAAAAACATA 60.502 41.667 28.24 0.00 35.34 2.29
810 1187 3.462982 GAGGCCGGTTTTTGAAAAACAT 58.537 40.909 28.24 12.79 35.34 2.71
811 1188 2.418884 GGAGGCCGGTTTTTGAAAAACA 60.419 45.455 28.24 0.00 35.34 2.83
812 1189 2.206750 GGAGGCCGGTTTTTGAAAAAC 58.793 47.619 21.76 21.76 32.33 2.43
813 1190 1.831736 TGGAGGCCGGTTTTTGAAAAA 59.168 42.857 1.90 0.00 0.00 1.94
814 1191 1.486211 TGGAGGCCGGTTTTTGAAAA 58.514 45.000 1.90 0.00 0.00 2.29
815 1192 1.342819 CATGGAGGCCGGTTTTTGAAA 59.657 47.619 1.90 0.00 0.00 2.69
816 1193 0.965439 CATGGAGGCCGGTTTTTGAA 59.035 50.000 1.90 0.00 0.00 2.69
817 1194 0.111446 TCATGGAGGCCGGTTTTTGA 59.889 50.000 1.90 0.00 0.00 2.69
818 1195 0.965439 TTCATGGAGGCCGGTTTTTG 59.035 50.000 1.90 0.00 0.00 2.44
819 1196 1.256812 CTTCATGGAGGCCGGTTTTT 58.743 50.000 1.90 0.00 0.00 1.94
820 1197 0.611896 CCTTCATGGAGGCCGGTTTT 60.612 55.000 7.24 0.00 38.35 2.43
821 1198 1.000896 CCTTCATGGAGGCCGGTTT 60.001 57.895 7.24 0.00 38.35 3.27
822 1199 2.677228 CCTTCATGGAGGCCGGTT 59.323 61.111 7.24 0.00 38.35 4.44
828 1205 2.203126 GCTCGGCCTTCATGGAGG 60.203 66.667 16.65 16.65 39.93 4.30
829 1206 1.227497 GAGCTCGGCCTTCATGGAG 60.227 63.158 0.00 0.00 38.35 3.86
830 1207 2.735772 GGAGCTCGGCCTTCATGGA 61.736 63.158 7.83 0.00 38.35 3.41
831 1208 2.203126 GGAGCTCGGCCTTCATGG 60.203 66.667 7.83 0.00 39.35 3.66
832 1209 0.677731 TTTGGAGCTCGGCCTTCATG 60.678 55.000 7.83 0.00 0.00 3.07
833 1210 0.038166 TTTTGGAGCTCGGCCTTCAT 59.962 50.000 7.83 0.00 0.00 2.57
834 1211 0.606401 CTTTTGGAGCTCGGCCTTCA 60.606 55.000 7.83 0.00 0.00 3.02
835 1212 1.308783 CCTTTTGGAGCTCGGCCTTC 61.309 60.000 7.83 0.00 44.07 3.46
836 1213 1.303643 CCTTTTGGAGCTCGGCCTT 60.304 57.895 7.83 0.00 44.07 4.35
837 1214 2.352805 CCTTTTGGAGCTCGGCCT 59.647 61.111 7.83 0.00 44.07 5.19
838 1215 3.443925 GCCTTTTGGAGCTCGGCC 61.444 66.667 16.31 0.00 44.07 6.13
839 1216 1.598701 AATGCCTTTTGGAGCTCGGC 61.599 55.000 19.32 19.32 44.07 5.54
840 1217 0.890683 AAATGCCTTTTGGAGCTCGG 59.109 50.000 7.83 3.78 44.07 4.63
841 1218 2.599659 GAAAATGCCTTTTGGAGCTCG 58.400 47.619 7.83 0.00 44.07 5.03
842 1219 2.599659 CGAAAATGCCTTTTGGAGCTC 58.400 47.619 4.71 4.71 44.07 4.09
843 1220 2.730550 CGAAAATGCCTTTTGGAGCT 57.269 45.000 4.31 0.00 44.07 4.09
847 1224 1.342819 TGGTCCGAAAATGCCTTTTGG 59.657 47.619 4.31 6.40 46.59 3.28
848 1225 2.810439 TGGTCCGAAAATGCCTTTTG 57.190 45.000 4.31 0.00 34.73 2.44
849 1226 3.447229 CCTATGGTCCGAAAATGCCTTTT 59.553 43.478 0.00 0.00 37.28 2.27
850 1227 3.023832 CCTATGGTCCGAAAATGCCTTT 58.976 45.455 0.00 0.00 0.00 3.11
851 1228 2.654863 CCTATGGTCCGAAAATGCCTT 58.345 47.619 0.00 0.00 0.00 4.35
852 1229 1.750682 GCCTATGGTCCGAAAATGCCT 60.751 52.381 0.00 0.00 0.00 4.75
853 1230 0.668535 GCCTATGGTCCGAAAATGCC 59.331 55.000 0.00 0.00 0.00 4.40
854 1231 0.668535 GGCCTATGGTCCGAAAATGC 59.331 55.000 0.00 0.00 0.00 3.56
855 1232 2.158755 AGAGGCCTATGGTCCGAAAATG 60.159 50.000 4.42 0.00 0.00 2.32
856 1233 2.127708 AGAGGCCTATGGTCCGAAAAT 58.872 47.619 4.42 0.00 0.00 1.82
857 1234 1.580059 AGAGGCCTATGGTCCGAAAA 58.420 50.000 4.42 0.00 0.00 2.29
858 1235 1.580059 AAGAGGCCTATGGTCCGAAA 58.420 50.000 4.42 0.00 0.00 3.46
859 1236 1.580059 AAAGAGGCCTATGGTCCGAA 58.420 50.000 4.42 0.00 0.00 4.30
860 1237 1.209504 CAAAAGAGGCCTATGGTCCGA 59.790 52.381 4.42 0.00 0.00 4.55
861 1238 1.065418 ACAAAAGAGGCCTATGGTCCG 60.065 52.381 4.42 0.00 0.00 4.79
862 1239 2.808906 ACAAAAGAGGCCTATGGTCC 57.191 50.000 4.42 0.00 0.00 4.46
863 1240 5.036117 TCATACAAAAGAGGCCTATGGTC 57.964 43.478 4.42 0.00 0.00 4.02
864 1241 4.687219 GCTCATACAAAAGAGGCCTATGGT 60.687 45.833 4.42 4.91 32.54 3.55
865 1242 3.817647 GCTCATACAAAAGAGGCCTATGG 59.182 47.826 4.42 0.00 32.54 2.74
872 1249 6.352516 ACAATAGAGGCTCATACAAAAGAGG 58.647 40.000 18.26 0.00 32.54 3.69
873 1250 6.199908 CGACAATAGAGGCTCATACAAAAGAG 59.800 42.308 18.26 0.00 35.01 2.85
874 1251 6.042777 CGACAATAGAGGCTCATACAAAAGA 58.957 40.000 18.26 0.00 0.00 2.52
875 1252 5.235186 CCGACAATAGAGGCTCATACAAAAG 59.765 44.000 18.26 1.60 0.00 2.27
876 1253 5.116180 CCGACAATAGAGGCTCATACAAAA 58.884 41.667 18.26 0.00 0.00 2.44
877 1254 4.693283 CCGACAATAGAGGCTCATACAAA 58.307 43.478 18.26 0.00 0.00 2.83
878 1255 3.492656 GCCGACAATAGAGGCTCATACAA 60.493 47.826 18.26 0.00 46.83 2.41
879 1256 2.035961 GCCGACAATAGAGGCTCATACA 59.964 50.000 18.26 0.00 46.83 2.29
926 1303 2.040412 CTGAGGGCTAGGGTGTCTTTTT 59.960 50.000 0.00 0.00 0.00 1.94
927 1304 1.630878 CTGAGGGCTAGGGTGTCTTTT 59.369 52.381 0.00 0.00 0.00 2.27
928 1305 1.203313 TCTGAGGGCTAGGGTGTCTTT 60.203 52.381 0.00 0.00 0.00 2.52
930 1307 0.413832 TTCTGAGGGCTAGGGTGTCT 59.586 55.000 0.00 0.00 0.00 3.41
931 1308 1.276622 TTTCTGAGGGCTAGGGTGTC 58.723 55.000 0.00 0.00 0.00 3.67
932 1309 1.742308 TTTTCTGAGGGCTAGGGTGT 58.258 50.000 0.00 0.00 0.00 4.16
933 1310 2.879103 TTTTTCTGAGGGCTAGGGTG 57.121 50.000 0.00 0.00 0.00 4.61
952 1329 5.887214 AAATTGCAAGAGGTAGGGTTTTT 57.113 34.783 4.94 0.00 0.00 1.94
953 1330 5.887214 AAAATTGCAAGAGGTAGGGTTTT 57.113 34.783 4.94 0.51 0.00 2.43
954 1331 5.887214 AAAAATTGCAAGAGGTAGGGTTT 57.113 34.783 4.94 0.00 0.00 3.27
978 1360 2.683768 GGGGAGAATGAGGCTAGAAGA 58.316 52.381 0.00 0.00 0.00 2.87
979 1361 1.696884 GGGGGAGAATGAGGCTAGAAG 59.303 57.143 0.00 0.00 0.00 2.85
1083 1468 1.153429 CGTACCTTGGTAGGGCTGC 60.153 63.158 10.66 0.00 46.58 5.25
1120 1530 2.287103 GTCACAACGAACAGGGAGAAAC 59.713 50.000 0.00 0.00 0.00 2.78
1186 1597 2.047560 CGACCCCGTTCAGGAACC 60.048 66.667 6.59 0.00 45.00 3.62
1365 1776 8.598075 CATATCAAGCCTTCTGCAAAATTAAAC 58.402 33.333 0.00 0.00 44.83 2.01
1400 1830 3.131396 GCCCGAAGAAACACGATCATAT 58.869 45.455 0.00 0.00 0.00 1.78
1458 1890 7.222872 TCCAAAGCATAACAATGTTGGAAAAT 58.777 30.769 9.15 0.00 41.08 1.82
1473 1905 5.302568 CCCAATTGCTCTTATCCAAAGCATA 59.697 40.000 0.00 0.00 44.84 3.14
1529 1961 7.671398 TCAGAGAGTTATGTATCAGGCATCATA 59.329 37.037 0.00 0.00 0.00 2.15
1543 1983 8.032952 TGTGCAAAACTAATCAGAGAGTTATG 57.967 34.615 0.00 0.00 34.81 1.90
1544 1984 8.671921 CATGTGCAAAACTAATCAGAGAGTTAT 58.328 33.333 0.00 0.00 34.81 1.89
1547 1987 6.233434 TCATGTGCAAAACTAATCAGAGAGT 58.767 36.000 0.00 0.00 0.00 3.24
1548 1988 6.732531 TCATGTGCAAAACTAATCAGAGAG 57.267 37.500 0.00 0.00 0.00 3.20
1550 1990 6.088824 GGTTCATGTGCAAAACTAATCAGAG 58.911 40.000 0.00 0.00 0.00 3.35
1551 1991 5.534278 TGGTTCATGTGCAAAACTAATCAGA 59.466 36.000 0.00 0.00 0.00 3.27
1552 1992 5.630680 GTGGTTCATGTGCAAAACTAATCAG 59.369 40.000 0.00 0.00 0.00 2.90
1553 1993 5.068329 TGTGGTTCATGTGCAAAACTAATCA 59.932 36.000 0.00 0.00 0.00 2.57
1554 1994 5.527951 TGTGGTTCATGTGCAAAACTAATC 58.472 37.500 0.00 0.00 0.00 1.75
1600 2193 7.535258 CAGAAATCACACAATGTGTAGCTTAAC 59.465 37.037 19.42 7.73 45.65 2.01
1686 2279 6.476243 AACTACGCATTTACAAACTACCTG 57.524 37.500 0.00 0.00 0.00 4.00
1745 2338 8.687824 ATTTTTACTAGCAATTGAAACATCCG 57.312 30.769 10.34 0.00 0.00 4.18
1752 2345 8.325421 TCACGGTATTTTTACTAGCAATTGAA 57.675 30.769 10.34 0.00 0.00 2.69
1768 2361 8.448615 GTTATTTAGAAAACTGCTCACGGTATT 58.551 33.333 0.00 0.00 32.87 1.89
1769 2362 7.604927 TGTTATTTAGAAAACTGCTCACGGTAT 59.395 33.333 0.00 0.00 32.87 2.73
1781 2374 8.029642 TGTCTAGCTGCTGTTATTTAGAAAAC 57.970 34.615 13.43 0.00 0.00 2.43
1806 2399 3.740141 GCCGTTAGTGTGTACATATGCCT 60.740 47.826 1.58 0.00 0.00 4.75
1849 2442 8.587608 CCATCTTTACAAATATGCATGGGTTAT 58.412 33.333 10.16 0.00 0.00 1.89
1857 2450 6.695429 TGCAAACCATCTTTACAAATATGCA 58.305 32.000 0.00 0.00 36.65 3.96
1893 2486 9.638239 CAGTAAATGTTAACAATGGCAATTAGT 57.362 29.630 13.23 4.44 0.00 2.24
1924 2517 6.784969 AGCTAGTTAGGATTCTACCATGTGAT 59.215 38.462 0.00 0.00 0.00 3.06
2069 2815 3.054878 CAACTTCATTGCACTTTCCTGC 58.945 45.455 0.00 0.00 37.70 4.85
2509 4008 5.695851 AGCTGATCGACAAATTTTCTTGT 57.304 34.783 0.00 0.00 42.23 3.16
2520 4019 0.378610 CGCACTCTAGCTGATCGACA 59.621 55.000 0.00 0.00 0.00 4.35
2521 4020 0.932585 GCGCACTCTAGCTGATCGAC 60.933 60.000 0.30 0.00 0.00 4.20
2714 5612 8.076178 AGTTACAATCTTTTTGATGTTTCCTCG 58.924 33.333 0.00 0.00 35.21 4.63
2873 5799 8.198109 TCCATTCTAGAAAATACTTCGGAGAAG 58.802 37.037 9.71 8.11 45.90 2.85
2927 5853 6.061022 TGCTAAATGGGTCTTCAGTATTCA 57.939 37.500 0.00 0.00 0.00 2.57
2979 5905 3.967326 TCTTCCACAAAGACAGGAGAAGA 59.033 43.478 0.00 0.00 39.12 2.87
2990 5916 7.535139 TCTTTTAGTTGTTGTCTTCCACAAAG 58.465 34.615 0.00 0.00 46.90 2.77
2995 5921 6.882140 TCTGTTCTTTTAGTTGTTGTCTTCCA 59.118 34.615 0.00 0.00 0.00 3.53
2996 5922 7.316544 TCTGTTCTTTTAGTTGTTGTCTTCC 57.683 36.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.