Multiple sequence alignment - TraesCS6A01G034000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G034000 chr6A 100.000 3074 0 0 1 3074 16530312 16533385 0.000000e+00 5677.0
1 TraesCS6A01G034000 chr6A 82.897 1491 223 19 672 2148 20522595 20521123 0.000000e+00 1312.0
2 TraesCS6A01G034000 chr6A 98.148 54 1 0 2848 2901 16532956 16532903 9.070000e-16 95.3
3 TraesCS6A01G034000 chr6A 98.148 54 1 0 2592 2645 16533212 16533159 9.070000e-16 95.3
4 TraesCS6A01G034000 chr6D 95.455 1650 72 2 686 2335 16242668 16244314 0.000000e+00 2628.0
5 TraesCS6A01G034000 chr6D 79.830 1408 259 20 747 2137 20312416 20311017 0.000000e+00 1003.0
6 TraesCS6A01G034000 chr6D 93.277 119 8 0 2861 2979 16244311 16244429 3.150000e-40 176.0
7 TraesCS6A01G034000 chr6B 92.952 1362 92 3 903 2261 27992462 27991102 0.000000e+00 1980.0
8 TraesCS6A01G034000 chr6B 83.458 1469 230 9 686 2148 35529585 35528124 0.000000e+00 1354.0
9 TraesCS6A01G034000 chr6B 79.489 1487 260 34 678 2136 34341696 34340227 0.000000e+00 1014.0
10 TraesCS6A01G034000 chr6B 87.437 199 18 5 678 873 27992654 27992460 3.990000e-54 222.0
11 TraesCS6A01G034000 chr6B 92.969 128 8 1 2422 2549 27991101 27990975 5.230000e-43 185.0
12 TraesCS6A01G034000 chr6B 85.629 167 20 4 2260 2424 487031768 487031932 4.080000e-39 172.0
13 TraesCS6A01G034000 chr6B 91.463 82 7 0 2648 2729 27990964 27990883 2.510000e-21 113.0
14 TraesCS6A01G034000 chrUn 79.542 1486 261 32 678 2136 273854545 273856014 0.000000e+00 1020.0
15 TraesCS6A01G034000 chrUn 88.339 566 49 13 119 678 142746146 142745592 0.000000e+00 664.0
16 TraesCS6A01G034000 chrUn 97.059 34 0 1 2547 2579 93497047 93497014 4.280000e-04 56.5
17 TraesCS6A01G034000 chrUn 97.059 34 0 1 2547 2579 93497103 93497136 4.280000e-04 56.5
18 TraesCS6A01G034000 chrUn 97.059 34 0 1 2547 2579 293241118 293241151 4.280000e-04 56.5
19 TraesCS6A01G034000 chrUn 97.059 34 0 1 2547 2579 353326896 353326929 4.280000e-04 56.5
20 TraesCS6A01G034000 chrUn 97.059 34 0 1 2547 2579 380281594 380281561 4.280000e-04 56.5
21 TraesCS6A01G034000 chrUn 97.059 34 0 1 2547 2579 382109298 382109265 4.280000e-04 56.5
22 TraesCS6A01G034000 chrUn 100.000 28 0 0 2552 2579 439263664 439263637 6.000000e-03 52.8
23 TraesCS6A01G034000 chr3B 89.265 680 67 6 3 677 790896157 790896835 0.000000e+00 846.0
24 TraesCS6A01G034000 chr3B 86.297 686 68 20 6 681 101746295 101745626 0.000000e+00 723.0
25 TraesCS6A01G034000 chr3B 85.217 690 77 16 3 675 822571289 822571970 0.000000e+00 686.0
26 TraesCS6A01G034000 chr7B 89.349 676 64 8 6 675 606641870 606641197 0.000000e+00 843.0
27 TraesCS6A01G034000 chr7B 79.770 1132 206 20 956 2073 744570691 744569569 0.000000e+00 800.0
28 TraesCS6A01G034000 chr7B 90.506 158 10 4 2260 2414 627977374 627977219 1.450000e-48 204.0
29 TraesCS6A01G034000 chr7B 89.032 155 13 4 2260 2411 503503362 503503515 4.050000e-44 189.0
30 TraesCS6A01G034000 chr7B 81.452 124 23 0 2425 2548 731047382 731047505 5.420000e-18 102.0
31 TraesCS6A01G034000 chr4A 88.757 676 69 6 6 675 724009487 724008813 0.000000e+00 821.0
32 TraesCS6A01G034000 chr4A 87.986 566 51 13 119 678 652764871 652764317 0.000000e+00 652.0
33 TraesCS6A01G034000 chr7A 87.120 691 58 18 3 675 706620457 706621134 0.000000e+00 754.0
34 TraesCS6A01G034000 chr7A 87.079 178 17 6 2260 2433 641988910 641988735 2.420000e-46 196.0
35 TraesCS6A01G034000 chr4B 85.609 681 76 14 6 679 509336915 509337580 0.000000e+00 695.0
36 TraesCS6A01G034000 chr7D 79.207 731 139 9 956 1678 632760645 632759920 2.130000e-136 496.0
37 TraesCS6A01G034000 chr7D 90.909 44 2 2 2537 2579 295322107 295322065 1.190000e-04 58.4
38 TraesCS6A01G034000 chr2D 88.750 160 16 2 2260 2418 27835063 27834905 8.700000e-46 195.0
39 TraesCS6A01G034000 chr3A 87.654 162 18 2 2258 2418 600921018 600920858 1.460000e-43 187.0
40 TraesCS6A01G034000 chr3A 84.946 186 22 5 2234 2418 41244465 41244645 1.880000e-42 183.0
41 TraesCS6A01G034000 chr5A 87.578 161 17 3 2260 2418 643329532 643329373 1.880000e-42 183.0
42 TraesCS6A01G034000 chr1D 85.629 167 21 3 2260 2424 242825775 242825940 4.080000e-39 172.0
43 TraesCS6A01G034000 chr3D 100.000 31 0 0 2549 2579 475261773 475261803 1.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G034000 chr6A 16530312 16533385 3073 False 5677 5677 100.00000 1 3074 1 chr6A.!!$F1 3073
1 TraesCS6A01G034000 chr6A 20521123 20522595 1472 True 1312 1312 82.89700 672 2148 1 chr6A.!!$R1 1476
2 TraesCS6A01G034000 chr6D 16242668 16244429 1761 False 1402 2628 94.36600 686 2979 2 chr6D.!!$F1 2293
3 TraesCS6A01G034000 chr6D 20311017 20312416 1399 True 1003 1003 79.83000 747 2137 1 chr6D.!!$R1 1390
4 TraesCS6A01G034000 chr6B 35528124 35529585 1461 True 1354 1354 83.45800 686 2148 1 chr6B.!!$R2 1462
5 TraesCS6A01G034000 chr6B 34340227 34341696 1469 True 1014 1014 79.48900 678 2136 1 chr6B.!!$R1 1458
6 TraesCS6A01G034000 chr6B 27990883 27992654 1771 True 625 1980 91.20525 678 2729 4 chr6B.!!$R3 2051
7 TraesCS6A01G034000 chrUn 273854545 273856014 1469 False 1020 1020 79.54200 678 2136 1 chrUn.!!$F2 1458
8 TraesCS6A01G034000 chrUn 142745592 142746146 554 True 664 664 88.33900 119 678 1 chrUn.!!$R2 559
9 TraesCS6A01G034000 chr3B 790896157 790896835 678 False 846 846 89.26500 3 677 1 chr3B.!!$F1 674
10 TraesCS6A01G034000 chr3B 101745626 101746295 669 True 723 723 86.29700 6 681 1 chr3B.!!$R1 675
11 TraesCS6A01G034000 chr3B 822571289 822571970 681 False 686 686 85.21700 3 675 1 chr3B.!!$F2 672
12 TraesCS6A01G034000 chr7B 606641197 606641870 673 True 843 843 89.34900 6 675 1 chr7B.!!$R1 669
13 TraesCS6A01G034000 chr7B 744569569 744570691 1122 True 800 800 79.77000 956 2073 1 chr7B.!!$R3 1117
14 TraesCS6A01G034000 chr4A 724008813 724009487 674 True 821 821 88.75700 6 675 1 chr4A.!!$R2 669
15 TraesCS6A01G034000 chr4A 652764317 652764871 554 True 652 652 87.98600 119 678 1 chr4A.!!$R1 559
16 TraesCS6A01G034000 chr7A 706620457 706621134 677 False 754 754 87.12000 3 675 1 chr7A.!!$F1 672
17 TraesCS6A01G034000 chr4B 509336915 509337580 665 False 695 695 85.60900 6 679 1 chr4B.!!$F1 673
18 TraesCS6A01G034000 chr7D 632759920 632760645 725 True 496 496 79.20700 956 1678 1 chr7D.!!$R2 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 563 1.638529 TCAAACGGGCATCCCAAAAT 58.361 45.0 2.47 0.0 45.83 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2306 2405 0.246635 ATTTGCTCCGTACGCAGTCT 59.753 50.0 10.49 0.0 43.93 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.899661 TTATTCCATTAAGTAATATAGCGCCAT 57.100 29.630 2.29 0.00 0.00 4.40
93 96 6.920758 GGACTTATAACTAGCAGAGATGTGTG 59.079 42.308 0.00 0.00 0.00 3.82
165 171 9.371136 GTTGAGTATTATCTGTCACAAAGATCA 57.629 33.333 0.00 0.00 35.92 2.92
420 431 3.753272 TGAAGTGCATGCTCCTTTAAGAC 59.247 43.478 20.33 5.03 0.00 3.01
460 473 7.151308 AGACGTGGAAATCATATTTTGCAAAA 58.849 30.769 25.76 25.76 38.42 2.44
487 500 8.593679 TCTTTGGAGAAAATTTATCCCTTTTCC 58.406 33.333 15.82 4.51 40.57 3.13
526 544 7.890655 AGGCTATTACATCTCCCCAAATATTTC 59.109 37.037 0.00 0.00 0.00 2.17
534 552 2.498078 TCCCCAAATATTTCAAACGGGC 59.502 45.455 12.93 0.00 0.00 6.13
544 563 1.638529 TCAAACGGGCATCCCAAAAT 58.361 45.000 2.47 0.00 45.83 1.82
563 582 8.658609 CCCAAAATGAATTCAAATGTGTATCAC 58.341 33.333 13.09 0.00 34.56 3.06
678 701 3.547613 GCACGGGTTGACGACTAGTATAG 60.548 52.174 0.00 0.00 40.17 1.31
679 702 3.873361 CACGGGTTGACGACTAGTATAGA 59.127 47.826 0.00 0.00 38.63 1.98
680 703 4.514441 CACGGGTTGACGACTAGTATAGAT 59.486 45.833 0.00 0.00 38.63 1.98
681 704 5.698089 CACGGGTTGACGACTAGTATAGATA 59.302 44.000 0.00 0.00 38.63 1.98
682 705 5.931146 ACGGGTTGACGACTAGTATAGATAG 59.069 44.000 0.00 0.00 38.63 2.08
683 706 6.162079 CGGGTTGACGACTAGTATAGATAGA 58.838 44.000 0.00 0.00 43.23 1.98
684 707 6.817641 CGGGTTGACGACTAGTATAGATAGAT 59.182 42.308 0.00 0.00 43.23 1.98
685 708 7.978414 CGGGTTGACGACTAGTATAGATAGATA 59.022 40.741 0.00 0.00 43.23 1.98
686 709 9.835389 GGGTTGACGACTAGTATAGATAGATAT 57.165 37.037 0.00 0.00 42.77 1.63
777 820 8.341892 TCTAGATATGCACAAGTATCTCGAAT 57.658 34.615 10.18 0.00 38.33 3.34
839 894 2.836154 GACCTTGCCTGTGGGTCA 59.164 61.111 6.49 0.00 46.14 4.02
861 916 4.096984 CAGTCCACTATTTCAGCATTTCCC 59.903 45.833 0.00 0.00 0.00 3.97
873 960 6.773976 TCAGCATTTCCCAGTTAATTAAGG 57.226 37.500 0.00 0.00 0.00 2.69
874 961 5.656416 TCAGCATTTCCCAGTTAATTAAGGG 59.344 40.000 13.94 13.94 42.86 3.95
875 962 5.422012 CAGCATTTCCCAGTTAATTAAGGGT 59.578 40.000 17.76 1.82 42.12 4.34
876 963 5.422012 AGCATTTCCCAGTTAATTAAGGGTG 59.578 40.000 17.76 12.13 42.12 4.61
877 964 5.186992 GCATTTCCCAGTTAATTAAGGGTGT 59.813 40.000 17.76 6.76 42.12 4.16
878 965 6.378848 GCATTTCCCAGTTAATTAAGGGTGTA 59.621 38.462 17.76 8.48 42.12 2.90
879 966 7.629866 GCATTTCCCAGTTAATTAAGGGTGTAC 60.630 40.741 17.76 6.20 42.12 2.90
880 967 6.451292 TTCCCAGTTAATTAAGGGTGTACA 57.549 37.500 17.76 0.00 42.12 2.90
881 968 5.807909 TCCCAGTTAATTAAGGGTGTACAC 58.192 41.667 18.01 18.01 42.12 2.90
882 969 5.310068 TCCCAGTTAATTAAGGGTGTACACA 59.690 40.000 26.51 6.89 42.12 3.72
883 970 6.005198 CCCAGTTAATTAAGGGTGTACACAA 58.995 40.000 26.51 13.05 36.52 3.33
884 971 6.490721 CCCAGTTAATTAAGGGTGTACACAAA 59.509 38.462 26.51 14.82 36.52 2.83
885 972 7.014422 CCCAGTTAATTAAGGGTGTACACAAAA 59.986 37.037 26.51 14.49 36.52 2.44
886 973 8.414778 CCAGTTAATTAAGGGTGTACACAAAAA 58.585 33.333 26.51 14.81 0.00 1.94
887 974 9.240159 CAGTTAATTAAGGGTGTACACAAAAAC 57.760 33.333 26.51 17.88 0.00 2.43
888 975 9.192642 AGTTAATTAAGGGTGTACACAAAAACT 57.807 29.630 26.51 19.37 0.00 2.66
889 976 9.240159 GTTAATTAAGGGTGTACACAAAAACTG 57.760 33.333 26.51 0.00 0.00 3.16
890 977 3.793797 AAGGGTGTACACAAAAACTGC 57.206 42.857 26.51 7.16 0.00 4.40
891 978 2.729194 AGGGTGTACACAAAAACTGCA 58.271 42.857 26.51 0.00 0.00 4.41
892 979 2.425668 AGGGTGTACACAAAAACTGCAC 59.574 45.455 26.51 5.75 0.00 4.57
893 980 2.446282 GGTGTACACAAAAACTGCACG 58.554 47.619 26.51 0.00 0.00 5.34
894 981 2.159490 GGTGTACACAAAAACTGCACGT 60.159 45.455 26.51 0.00 0.00 4.49
895 982 2.843643 GTGTACACAAAAACTGCACGTG 59.156 45.455 21.14 12.28 0.00 4.49
896 983 1.843753 GTACACAAAAACTGCACGTGC 59.156 47.619 33.11 33.11 42.50 5.34
976 1064 9.656323 ACAACCCAATAGATATCTAAGACACTA 57.344 33.333 16.27 0.00 31.39 2.74
1048 1139 1.093972 CATGGCCATCGTGCTTGTTA 58.906 50.000 17.61 0.00 0.00 2.41
1082 1173 0.250684 ACACACGCCATGGACATCAA 60.251 50.000 18.40 0.00 0.00 2.57
1088 1179 3.817084 CACGCCATGGACATCAAAGATAT 59.183 43.478 18.40 0.00 0.00 1.63
1173 1264 2.158813 GGGAGACAACCTCAGTGACAAA 60.159 50.000 0.00 0.00 43.76 2.83
1198 1289 1.333619 GGCGCTTCAAAGTGTTCAAGA 59.666 47.619 7.64 0.00 38.74 3.02
1371 1462 3.135712 ACCAGTTCACACATGGAGTTGTA 59.864 43.478 0.00 0.00 37.54 2.41
1404 1495 6.205853 GTGACAACTTACCAATGTATGTGGAA 59.794 38.462 0.00 0.00 39.62 3.53
1539 1631 0.905357 CCATCAGGACGAGGAACCTT 59.095 55.000 0.00 0.00 36.89 3.50
1728 1823 2.304761 ACATAACCCTGTCGTCACCATT 59.695 45.455 0.00 0.00 0.00 3.16
1849 1944 1.687123 GCTATGGAGGAGGCGTCTTTA 59.313 52.381 6.34 0.00 0.00 1.85
1966 2061 4.141158 GGATCATAAAGAACTCATGGGGGT 60.141 45.833 0.00 0.00 0.00 4.95
2200 2298 5.066893 CACCGCTACCTCAACTACTATAACA 59.933 44.000 0.00 0.00 0.00 2.41
2244 2343 8.646004 TCATTTCCCTCTATCTGTCTTCTTATG 58.354 37.037 0.00 0.00 0.00 1.90
2269 2368 5.208294 TGATTTCACTACTACTCCCTCCT 57.792 43.478 0.00 0.00 0.00 3.69
2319 2418 2.492881 TCCAATAAAGACTGCGTACGGA 59.507 45.455 18.39 14.19 0.00 4.69
2331 2430 1.990799 CGTACGGAGCAAATGAGTGA 58.009 50.000 7.57 0.00 0.00 3.41
2332 2431 2.333926 CGTACGGAGCAAATGAGTGAA 58.666 47.619 7.57 0.00 0.00 3.18
2333 2432 2.930040 CGTACGGAGCAAATGAGTGAAT 59.070 45.455 7.57 0.00 0.00 2.57
2334 2433 3.000322 CGTACGGAGCAAATGAGTGAATC 60.000 47.826 7.57 0.00 0.00 2.52
2335 2434 2.359900 ACGGAGCAAATGAGTGAATCC 58.640 47.619 0.00 0.00 0.00 3.01
2336 2435 2.290260 ACGGAGCAAATGAGTGAATCCA 60.290 45.455 0.00 0.00 0.00 3.41
2337 2436 2.947652 CGGAGCAAATGAGTGAATCCAT 59.052 45.455 0.00 0.00 0.00 3.41
2338 2437 4.129380 CGGAGCAAATGAGTGAATCCATA 58.871 43.478 0.00 0.00 0.00 2.74
2339 2438 4.024556 CGGAGCAAATGAGTGAATCCATAC 60.025 45.833 0.00 0.00 0.00 2.39
2340 2439 5.128919 GGAGCAAATGAGTGAATCCATACT 58.871 41.667 0.00 0.00 0.00 2.12
2341 2440 5.238214 GGAGCAAATGAGTGAATCCATACTC 59.762 44.000 0.00 0.00 42.77 2.59
2342 2441 5.999044 AGCAAATGAGTGAATCCATACTCT 58.001 37.500 0.00 0.00 42.86 3.24
2343 2442 7.129457 AGCAAATGAGTGAATCCATACTCTA 57.871 36.000 0.00 0.00 42.86 2.43
2344 2443 7.568349 AGCAAATGAGTGAATCCATACTCTAA 58.432 34.615 0.00 0.00 42.86 2.10
2345 2444 8.049117 AGCAAATGAGTGAATCCATACTCTAAA 58.951 33.333 0.00 0.00 42.86 1.85
2346 2445 8.677300 GCAAATGAGTGAATCCATACTCTAAAA 58.323 33.333 0.00 0.00 42.86 1.52
2415 2514 8.959705 AAAAGACCTATATTTAGAAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2416 2515 6.667558 AGACCTATATTTAGAAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2417 2516 6.379579 AGACCTATATTTAGAAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2418 2517 6.842807 AGACCTATATTTAGAAACGGAGGGAA 59.157 38.462 0.00 0.00 0.00 3.97
2419 2518 7.513091 AGACCTATATTTAGAAACGGAGGGAAT 59.487 37.037 0.00 0.00 0.00 3.01
2420 2519 7.450903 ACCTATATTTAGAAACGGAGGGAATG 58.549 38.462 0.00 0.00 0.00 2.67
2435 2534 7.778382 ACGGAGGGAATGTTATTTATAAAAGCT 59.222 33.333 1.21 0.00 0.00 3.74
2436 2535 8.630037 CGGAGGGAATGTTATTTATAAAAGCTT 58.370 33.333 1.21 0.00 0.00 3.74
2473 2572 2.134789 ATGAACTGAGCCATCCAACC 57.865 50.000 0.00 0.00 0.00 3.77
2482 2581 3.327757 TGAGCCATCCAACCACCTATATC 59.672 47.826 0.00 0.00 0.00 1.63
2486 2585 3.560025 CCATCCAACCACCTATATCCAGC 60.560 52.174 0.00 0.00 0.00 4.85
2501 2600 1.154016 CAGCGTCTCACCCTACACG 60.154 63.158 0.00 0.00 35.32 4.49
2564 2663 7.587375 TGTTAATTAGGTTAGGGTTTAGGGT 57.413 36.000 0.00 0.00 0.00 4.34
2565 2664 7.999042 TGTTAATTAGGTTAGGGTTTAGGGTT 58.001 34.615 0.00 0.00 0.00 4.11
2566 2665 8.455309 TGTTAATTAGGTTAGGGTTTAGGGTTT 58.545 33.333 0.00 0.00 0.00 3.27
2567 2666 9.973661 GTTAATTAGGTTAGGGTTTAGGGTTTA 57.026 33.333 0.00 0.00 0.00 2.01
2569 2668 6.641161 TTAGGTTAGGGTTTAGGGTTTAGG 57.359 41.667 0.00 0.00 0.00 2.69
2570 2669 3.854389 AGGTTAGGGTTTAGGGTTTAGGG 59.146 47.826 0.00 0.00 0.00 3.53
2571 2670 3.593328 GGTTAGGGTTTAGGGTTTAGGGT 59.407 47.826 0.00 0.00 0.00 4.34
2572 2671 4.044571 GGTTAGGGTTTAGGGTTTAGGGTT 59.955 45.833 0.00 0.00 0.00 4.11
2573 2672 5.459536 GGTTAGGGTTTAGGGTTTAGGGTTT 60.460 44.000 0.00 0.00 0.00 3.27
2574 2673 6.240438 GGTTAGGGTTTAGGGTTTAGGGTTTA 60.240 42.308 0.00 0.00 0.00 2.01
2575 2674 5.525454 AGGGTTTAGGGTTTAGGGTTTAG 57.475 43.478 0.00 0.00 0.00 1.85
2576 2675 4.293102 AGGGTTTAGGGTTTAGGGTTTAGG 59.707 45.833 0.00 0.00 0.00 2.69
2577 2676 4.570505 GGGTTTAGGGTTTAGGGTTTAGGG 60.571 50.000 0.00 0.00 0.00 3.53
2578 2677 4.044571 GGTTTAGGGTTTAGGGTTTAGGGT 59.955 45.833 0.00 0.00 0.00 4.34
2579 2678 5.256474 GTTTAGGGTTTAGGGTTTAGGGTC 58.744 45.833 0.00 0.00 0.00 4.46
2580 2679 3.008340 AGGGTTTAGGGTTTAGGGTCA 57.992 47.619 0.00 0.00 0.00 4.02
2581 2680 3.548967 AGGGTTTAGGGTTTAGGGTCAT 58.451 45.455 0.00 0.00 0.00 3.06
2582 2681 3.268595 AGGGTTTAGGGTTTAGGGTCATG 59.731 47.826 0.00 0.00 0.00 3.07
2583 2682 3.267551 GGGTTTAGGGTTTAGGGTCATGA 59.732 47.826 0.00 0.00 0.00 3.07
2584 2683 4.267536 GGTTTAGGGTTTAGGGTCATGAC 58.732 47.826 17.91 17.91 0.00 3.06
2593 2692 4.645809 GGTCATGACCCCAAGAGC 57.354 61.111 31.37 6.18 45.68 4.09
2594 2693 1.685224 GGTCATGACCCCAAGAGCA 59.315 57.895 31.37 0.00 45.68 4.26
2595 2694 0.393537 GGTCATGACCCCAAGAGCAG 60.394 60.000 31.37 0.00 45.68 4.24
2596 2695 1.028868 GTCATGACCCCAAGAGCAGC 61.029 60.000 15.31 0.00 0.00 5.25
2597 2696 1.751927 CATGACCCCAAGAGCAGCC 60.752 63.158 0.00 0.00 0.00 4.85
2598 2697 2.988839 ATGACCCCAAGAGCAGCCC 61.989 63.158 0.00 0.00 0.00 5.19
2599 2698 4.432741 GACCCCAAGAGCAGCCCC 62.433 72.222 0.00 0.00 0.00 5.80
2601 2700 3.665971 CCCCAAGAGCAGCCCCTT 61.666 66.667 0.00 0.00 0.00 3.95
2602 2701 2.308722 CCCCAAGAGCAGCCCCTTA 61.309 63.158 0.00 0.00 0.00 2.69
2603 2702 1.225704 CCCAAGAGCAGCCCCTTAG 59.774 63.158 0.00 0.00 0.00 2.18
2604 2703 1.225704 CCAAGAGCAGCCCCTTAGG 59.774 63.158 0.00 0.00 39.47 2.69
2605 2704 1.274703 CCAAGAGCAGCCCCTTAGGA 61.275 60.000 0.00 0.00 38.24 2.94
2606 2705 0.107459 CAAGAGCAGCCCCTTAGGAC 60.107 60.000 0.00 0.00 38.24 3.85
2607 2706 0.547712 AAGAGCAGCCCCTTAGGACA 60.548 55.000 0.00 0.00 38.24 4.02
2608 2707 0.980231 AGAGCAGCCCCTTAGGACAG 60.980 60.000 0.00 0.00 38.24 3.51
2609 2708 2.124529 GCAGCCCCTTAGGACAGC 60.125 66.667 0.00 0.00 38.24 4.40
2610 2709 2.592308 CAGCCCCTTAGGACAGCC 59.408 66.667 0.00 0.00 38.24 4.85
2611 2710 2.124996 AGCCCCTTAGGACAGCCA 59.875 61.111 0.00 0.00 38.24 4.75
2612 2711 1.308216 AGCCCCTTAGGACAGCCAT 60.308 57.895 0.00 0.00 38.24 4.40
2613 2712 1.149401 GCCCCTTAGGACAGCCATC 59.851 63.158 0.00 0.00 38.24 3.51
2614 2713 1.839894 CCCCTTAGGACAGCCATCC 59.160 63.158 0.00 0.00 38.24 3.51
2615 2714 0.988145 CCCCTTAGGACAGCCATCCA 60.988 60.000 0.00 0.00 41.73 3.41
2616 2715 0.918983 CCCTTAGGACAGCCATCCAA 59.081 55.000 0.00 0.00 41.73 3.53
2617 2716 1.496429 CCCTTAGGACAGCCATCCAAT 59.504 52.381 0.00 0.00 41.73 3.16
2618 2717 2.487986 CCCTTAGGACAGCCATCCAATC 60.488 54.545 0.00 0.00 41.73 2.67
2619 2718 2.487934 CTTAGGACAGCCATCCAATCG 58.512 52.381 6.62 0.00 41.73 3.34
2620 2719 0.106708 TAGGACAGCCATCCAATCGC 59.893 55.000 6.62 0.00 41.73 4.58
2621 2720 2.189499 GGACAGCCATCCAATCGCC 61.189 63.158 0.00 0.00 38.77 5.54
2622 2721 1.451927 GACAGCCATCCAATCGCCA 60.452 57.895 0.00 0.00 0.00 5.69
2623 2722 1.001020 ACAGCCATCCAATCGCCAA 60.001 52.632 0.00 0.00 0.00 4.52
2624 2723 0.611618 ACAGCCATCCAATCGCCAAA 60.612 50.000 0.00 0.00 0.00 3.28
2625 2724 0.531657 CAGCCATCCAATCGCCAAAA 59.468 50.000 0.00 0.00 0.00 2.44
2626 2725 1.067000 CAGCCATCCAATCGCCAAAAA 60.067 47.619 0.00 0.00 0.00 1.94
2627 2726 1.832998 AGCCATCCAATCGCCAAAAAT 59.167 42.857 0.00 0.00 0.00 1.82
2628 2727 1.935199 GCCATCCAATCGCCAAAAATG 59.065 47.619 0.00 0.00 0.00 2.32
2629 2728 2.418471 GCCATCCAATCGCCAAAAATGA 60.418 45.455 0.00 0.00 0.00 2.57
2630 2729 3.742013 GCCATCCAATCGCCAAAAATGAT 60.742 43.478 0.00 0.00 0.00 2.45
2631 2730 4.053295 CCATCCAATCGCCAAAAATGATC 58.947 43.478 0.00 0.00 0.00 2.92
2632 2731 3.419264 TCCAATCGCCAAAAATGATCG 57.581 42.857 0.00 0.00 0.00 3.69
2633 2732 2.098934 TCCAATCGCCAAAAATGATCGG 59.901 45.455 0.00 0.00 0.00 4.18
2634 2733 2.462889 CAATCGCCAAAAATGATCGGG 58.537 47.619 0.00 0.00 0.00 5.14
2635 2734 1.032014 ATCGCCAAAAATGATCGGGG 58.968 50.000 0.00 0.00 0.00 5.73
2636 2735 1.226945 CGCCAAAAATGATCGGGGC 60.227 57.895 0.00 0.00 38.04 5.80
2637 2736 1.143838 GCCAAAAATGATCGGGGCC 59.856 57.895 0.00 0.00 35.42 5.80
2638 2737 1.822615 CCAAAAATGATCGGGGCCC 59.177 57.895 15.76 15.76 0.00 5.80
2657 2756 5.268544 GGCCCGAGATCGTAATTTTAAAAC 58.731 41.667 1.97 0.00 37.74 2.43
2720 2819 8.747471 TCAACATTAATTGCAGATAAACATGGA 58.253 29.630 0.00 0.00 0.00 3.41
2750 2849 8.982723 AGTATTACTGTCAAATAGGACATGAGT 58.017 33.333 0.00 0.00 45.97 3.41
2751 2850 9.035607 GTATTACTGTCAAATAGGACATGAGTG 57.964 37.037 0.00 0.00 45.97 3.51
2752 2851 4.256920 ACTGTCAAATAGGACATGAGTGC 58.743 43.478 0.00 0.00 45.97 4.40
2753 2852 4.256110 CTGTCAAATAGGACATGAGTGCA 58.744 43.478 0.00 0.00 45.97 4.57
2754 2853 4.002982 TGTCAAATAGGACATGAGTGCAC 58.997 43.478 9.40 9.40 42.56 4.57
2755 2854 3.062639 GTCAAATAGGACATGAGTGCACG 59.937 47.826 12.01 0.00 38.75 5.34
2756 2855 3.002791 CAAATAGGACATGAGTGCACGT 58.997 45.455 12.01 2.54 38.75 4.49
2757 2856 4.081917 TCAAATAGGACATGAGTGCACGTA 60.082 41.667 12.01 4.73 38.75 3.57
2758 2857 2.933495 TAGGACATGAGTGCACGTAC 57.067 50.000 12.01 3.78 38.75 3.67
2759 2858 0.966179 AGGACATGAGTGCACGTACA 59.034 50.000 12.01 13.45 38.75 2.90
2760 2859 1.068474 GGACATGAGTGCACGTACAC 58.932 55.000 11.08 11.08 41.02 2.90
2761 2860 1.604438 GGACATGAGTGCACGTACACA 60.604 52.381 20.58 6.38 43.23 3.72
2762 2861 2.131972 GACATGAGTGCACGTACACAA 58.868 47.619 20.58 9.02 43.23 3.33
2763 2862 2.736721 GACATGAGTGCACGTACACAAT 59.263 45.455 20.58 10.86 43.23 2.71
2764 2863 3.138304 ACATGAGTGCACGTACACAATT 58.862 40.909 20.58 0.01 43.23 2.32
2765 2864 4.311606 ACATGAGTGCACGTACACAATTA 58.688 39.130 20.58 4.55 43.23 1.40
2766 2865 4.151689 ACATGAGTGCACGTACACAATTAC 59.848 41.667 20.58 7.25 43.23 1.89
2767 2866 3.985008 TGAGTGCACGTACACAATTACT 58.015 40.909 20.58 0.00 43.23 2.24
2768 2867 5.123805 TGAGTGCACGTACACAATTACTA 57.876 39.130 20.58 0.00 43.23 1.82
2769 2868 4.919168 TGAGTGCACGTACACAATTACTAC 59.081 41.667 20.58 3.01 43.23 2.73
2770 2869 5.130292 AGTGCACGTACACAATTACTACT 57.870 39.130 20.58 0.00 43.23 2.57
2771 2870 5.159209 AGTGCACGTACACAATTACTACTC 58.841 41.667 20.58 0.00 43.23 2.59
2772 2871 5.048224 AGTGCACGTACACAATTACTACTCT 60.048 40.000 20.58 0.00 43.23 3.24
2773 2872 5.632347 GTGCACGTACACAATTACTACTCTT 59.368 40.000 14.08 0.00 40.40 2.85
2774 2873 6.803320 GTGCACGTACACAATTACTACTCTTA 59.197 38.462 14.08 0.00 40.40 2.10
2775 2874 7.487189 GTGCACGTACACAATTACTACTCTTAT 59.513 37.037 14.08 0.00 40.40 1.73
2776 2875 8.676401 TGCACGTACACAATTACTACTCTTATA 58.324 33.333 0.00 0.00 0.00 0.98
2777 2876 9.674824 GCACGTACACAATTACTACTCTTATAT 57.325 33.333 0.00 0.00 0.00 0.86
2801 2900 7.330900 TCTTATCTAGGACAGTAGAAAACCG 57.669 40.000 0.00 0.00 32.72 4.44
2802 2901 7.114754 TCTTATCTAGGACAGTAGAAAACCGA 58.885 38.462 0.00 0.00 32.72 4.69
2803 2902 5.838531 ATCTAGGACAGTAGAAAACCGAG 57.161 43.478 0.00 0.00 32.72 4.63
2804 2903 2.745515 AGGACAGTAGAAAACCGAGC 57.254 50.000 0.00 0.00 0.00 5.03
2805 2904 1.275573 AGGACAGTAGAAAACCGAGCC 59.724 52.381 0.00 0.00 0.00 4.70
2806 2905 1.001633 GGACAGTAGAAAACCGAGCCA 59.998 52.381 0.00 0.00 0.00 4.75
2807 2906 2.549349 GGACAGTAGAAAACCGAGCCAA 60.549 50.000 0.00 0.00 0.00 4.52
2808 2907 3.135994 GACAGTAGAAAACCGAGCCAAA 58.864 45.455 0.00 0.00 0.00 3.28
2809 2908 3.547746 ACAGTAGAAAACCGAGCCAAAA 58.452 40.909 0.00 0.00 0.00 2.44
2810 2909 3.564225 ACAGTAGAAAACCGAGCCAAAAG 59.436 43.478 0.00 0.00 0.00 2.27
2811 2910 2.552743 AGTAGAAAACCGAGCCAAAAGC 59.447 45.455 0.00 0.00 44.25 3.51
2821 2920 2.787191 GCCAAAAGCTAGCCCTCTC 58.213 57.895 12.13 0.00 38.99 3.20
2822 2921 0.035056 GCCAAAAGCTAGCCCTCTCA 60.035 55.000 12.13 0.00 38.99 3.27
2823 2922 2.016096 GCCAAAAGCTAGCCCTCTCAG 61.016 57.143 12.13 0.00 38.99 3.35
2824 2923 1.407989 CCAAAAGCTAGCCCTCTCAGG 60.408 57.143 12.13 0.81 34.30 3.86
2843 2942 2.059215 GCACTAAGCGATTTTCGTCG 57.941 50.000 0.00 0.00 42.81 5.12
2844 2943 1.389106 GCACTAAGCGATTTTCGTCGT 59.611 47.619 0.00 0.00 42.81 4.34
2845 2944 2.532388 GCACTAAGCGATTTTCGTCGTC 60.532 50.000 0.00 0.00 42.81 4.20
2846 2945 2.659757 CACTAAGCGATTTTCGTCGTCA 59.340 45.455 0.00 0.00 42.81 4.35
2847 2946 2.915463 ACTAAGCGATTTTCGTCGTCAG 59.085 45.455 0.00 0.00 42.81 3.51
2848 2947 2.060326 AAGCGATTTTCGTCGTCAGA 57.940 45.000 0.00 0.00 42.81 3.27
2849 2948 2.279582 AGCGATTTTCGTCGTCAGAT 57.720 45.000 0.00 0.00 42.81 2.90
2850 2949 2.186076 AGCGATTTTCGTCGTCAGATC 58.814 47.619 0.00 0.00 42.81 2.75
2851 2950 2.159366 AGCGATTTTCGTCGTCAGATCT 60.159 45.455 0.00 0.00 42.81 2.75
2852 2951 2.214467 GCGATTTTCGTCGTCAGATCTC 59.786 50.000 0.00 0.00 42.81 2.75
2853 2952 2.460760 CGATTTTCGTCGTCAGATCTCG 59.539 50.000 0.00 0.00 36.88 4.04
2854 2953 2.257974 TTTTCGTCGTCAGATCTCGG 57.742 50.000 4.20 0.00 0.00 4.63
2855 2954 0.450583 TTTCGTCGTCAGATCTCGGG 59.549 55.000 4.20 0.00 0.00 5.14
2856 2955 0.675837 TTCGTCGTCAGATCTCGGGT 60.676 55.000 4.20 0.00 0.00 5.28
2857 2956 1.088340 TCGTCGTCAGATCTCGGGTC 61.088 60.000 4.20 0.00 0.00 4.46
2858 2957 1.728672 GTCGTCAGATCTCGGGTCC 59.271 63.158 4.20 0.00 0.00 4.46
2859 2958 1.453379 TCGTCAGATCTCGGGTCCC 60.453 63.158 0.00 0.00 0.00 4.46
2873 2972 0.100503 GGTCCCGATCATTTTTGGCG 59.899 55.000 0.00 0.00 0.00 5.69
2874 2973 1.091537 GTCCCGATCATTTTTGGCGA 58.908 50.000 0.00 0.00 0.00 5.54
2876 2975 2.099098 GTCCCGATCATTTTTGGCGATT 59.901 45.455 0.00 0.00 0.00 3.34
2939 3038 0.681175 AAGCTTGTGGTTGATTGGGC 59.319 50.000 0.00 0.00 32.09 5.36
2945 3044 1.133199 TGTGGTTGATTGGGCCTTCTT 60.133 47.619 4.53 0.00 0.00 2.52
2979 3078 1.959282 ACGAACAGAACGACTAACCCT 59.041 47.619 0.00 0.00 34.70 4.34
2980 3079 3.058016 CACGAACAGAACGACTAACCCTA 60.058 47.826 0.00 0.00 34.70 3.53
2981 3080 3.569701 ACGAACAGAACGACTAACCCTAA 59.430 43.478 0.00 0.00 34.70 2.69
2982 3081 3.916776 CGAACAGAACGACTAACCCTAAC 59.083 47.826 0.00 0.00 0.00 2.34
2983 3082 4.320788 CGAACAGAACGACTAACCCTAACT 60.321 45.833 0.00 0.00 0.00 2.24
2984 3083 5.536260 GAACAGAACGACTAACCCTAACTT 58.464 41.667 0.00 0.00 0.00 2.66
2985 3084 5.541953 ACAGAACGACTAACCCTAACTTT 57.458 39.130 0.00 0.00 0.00 2.66
2986 3085 5.536260 ACAGAACGACTAACCCTAACTTTC 58.464 41.667 0.00 0.00 0.00 2.62
2987 3086 4.928020 CAGAACGACTAACCCTAACTTTCC 59.072 45.833 0.00 0.00 0.00 3.13
2988 3087 4.590222 AGAACGACTAACCCTAACTTTCCA 59.410 41.667 0.00 0.00 0.00 3.53
2989 3088 5.247792 AGAACGACTAACCCTAACTTTCCAT 59.752 40.000 0.00 0.00 0.00 3.41
2990 3089 5.082251 ACGACTAACCCTAACTTTCCATC 57.918 43.478 0.00 0.00 0.00 3.51
2991 3090 4.776308 ACGACTAACCCTAACTTTCCATCT 59.224 41.667 0.00 0.00 0.00 2.90
2992 3091 5.247792 ACGACTAACCCTAACTTTCCATCTT 59.752 40.000 0.00 0.00 0.00 2.40
2993 3092 6.171213 CGACTAACCCTAACTTTCCATCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2994 3093 6.313164 CGACTAACCCTAACTTTCCATCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2995 3094 7.331089 ACTAACCCTAACTTTCCATCTTTCT 57.669 36.000 0.00 0.00 0.00 2.52
2996 3095 7.168905 ACTAACCCTAACTTTCCATCTTTCTG 58.831 38.462 0.00 0.00 0.00 3.02
2997 3096 5.584551 ACCCTAACTTTCCATCTTTCTGT 57.415 39.130 0.00 0.00 0.00 3.41
2998 3097 5.316987 ACCCTAACTTTCCATCTTTCTGTG 58.683 41.667 0.00 0.00 0.00 3.66
2999 3098 5.163088 ACCCTAACTTTCCATCTTTCTGTGT 60.163 40.000 0.00 0.00 0.00 3.72
3000 3099 5.770162 CCCTAACTTTCCATCTTTCTGTGTT 59.230 40.000 0.00 0.00 0.00 3.32
3001 3100 6.265422 CCCTAACTTTCCATCTTTCTGTGTTT 59.735 38.462 0.00 0.00 0.00 2.83
3002 3101 7.447238 CCCTAACTTTCCATCTTTCTGTGTTTA 59.553 37.037 0.00 0.00 0.00 2.01
3003 3102 9.014297 CCTAACTTTCCATCTTTCTGTGTTTAT 57.986 33.333 0.00 0.00 0.00 1.40
3006 3105 7.661040 ACTTTCCATCTTTCTGTGTTTATTGG 58.339 34.615 0.00 0.00 0.00 3.16
3007 3106 5.643379 TCCATCTTTCTGTGTTTATTGGC 57.357 39.130 0.00 0.00 0.00 4.52
3008 3107 4.155826 TCCATCTTTCTGTGTTTATTGGCG 59.844 41.667 0.00 0.00 0.00 5.69
3009 3108 4.414852 CATCTTTCTGTGTTTATTGGCGG 58.585 43.478 0.00 0.00 0.00 6.13
3010 3109 3.482436 TCTTTCTGTGTTTATTGGCGGT 58.518 40.909 0.00 0.00 0.00 5.68
3011 3110 3.500680 TCTTTCTGTGTTTATTGGCGGTC 59.499 43.478 0.00 0.00 0.00 4.79
3012 3111 1.816074 TCTGTGTTTATTGGCGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
3013 3112 0.808755 CTGTGTTTATTGGCGGTCCC 59.191 55.000 0.00 0.00 0.00 4.46
3014 3113 0.110678 TGTGTTTATTGGCGGTCCCA 59.889 50.000 0.00 0.00 43.51 4.37
3015 3114 0.808755 GTGTTTATTGGCGGTCCCAG 59.191 55.000 0.00 0.00 46.39 4.45
3016 3115 0.322997 TGTTTATTGGCGGTCCCAGG 60.323 55.000 0.00 0.00 46.39 4.45
3017 3116 0.323087 GTTTATTGGCGGTCCCAGGT 60.323 55.000 0.00 0.00 46.39 4.00
3018 3117 0.322997 TTTATTGGCGGTCCCAGGTG 60.323 55.000 0.00 0.00 46.39 4.00
3019 3118 1.202099 TTATTGGCGGTCCCAGGTGA 61.202 55.000 0.00 0.00 46.39 4.02
3020 3119 1.906105 TATTGGCGGTCCCAGGTGAC 61.906 60.000 0.48 0.48 46.39 3.67
3021 3120 4.954118 TGGCGGTCCCAGGTGACT 62.954 66.667 7.72 0.00 39.18 3.41
3031 3130 3.476386 AGGTGACTGGGTGAGCAG 58.524 61.111 0.00 0.00 41.13 4.24
3032 3131 1.460305 AGGTGACTGGGTGAGCAGT 60.460 57.895 0.00 0.00 41.13 4.40
3033 3132 1.004440 GGTGACTGGGTGAGCAGTC 60.004 63.158 0.00 0.00 45.75 3.51
3035 3134 2.433318 GACTGGGTGAGCAGTCGC 60.433 66.667 0.00 0.00 38.46 5.19
3061 3160 4.803426 CCGCCGAGGCAGTCACTC 62.803 72.222 15.03 0.00 42.06 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.899661 TGGCGCTATATTACTTAATGGAATAAT 57.100 29.630 7.64 0.00 0.00 1.28
27 28 8.668353 ACATTGATGGCGCTATATTACTTAATG 58.332 33.333 6.12 6.02 0.00 1.90
47 48 7.568349 AGTCCAGCATAAGATAAAGACATTGA 58.432 34.615 0.00 0.00 0.00 2.57
140 146 9.371136 GTGATCTTTGTGACAGATAATACTCAA 57.629 33.333 0.00 0.00 30.70 3.02
290 298 8.691661 ACTGGACAACATTCAGTTACTAATTT 57.308 30.769 0.00 0.00 38.44 1.82
336 347 4.628333 CCAAATGTGAAATGTTGCCTCATC 59.372 41.667 0.00 0.00 0.00 2.92
339 350 3.993920 ACCAAATGTGAAATGTTGCCTC 58.006 40.909 0.00 0.00 0.00 4.70
382 393 5.762711 TGCACTTCATAAGTAAACTCAGCAA 59.237 36.000 0.00 0.00 40.46 3.91
420 431 6.961359 TCCACGTCTTTATGTGTTTCATAG 57.039 37.500 0.00 0.00 40.44 2.23
479 492 2.037511 TGCAGCATTTGAAGGAAAAGGG 59.962 45.455 0.00 0.00 0.00 3.95
534 552 7.675962 ACACATTTGAATTCATTTTGGGATG 57.324 32.000 9.40 7.72 0.00 3.51
622 644 5.009410 GCCTAGCTAATTCATGTGCATTTCT 59.991 40.000 0.00 0.00 0.00 2.52
631 653 1.532868 GCACGGCCTAGCTAATTCATG 59.467 52.381 0.00 0.00 0.00 3.07
777 820 6.710597 AGACGGTGAATCTAGCAGTAATTA 57.289 37.500 0.00 0.00 0.00 1.40
839 894 4.263905 TGGGAAATGCTGAAATAGTGGACT 60.264 41.667 0.00 0.00 0.00 3.85
861 916 9.240159 GTTTTTGTGTACACCCTTAATTAACTG 57.760 33.333 22.91 0.00 0.00 3.16
873 960 2.159490 ACGTGCAGTTTTTGTGTACACC 60.159 45.455 22.91 7.29 31.45 4.16
874 961 2.843643 CACGTGCAGTTTTTGTGTACAC 59.156 45.455 19.36 19.36 31.45 2.90
875 962 2.729467 GCACGTGCAGTTTTTGTGTACA 60.729 45.455 34.52 0.00 41.59 2.90
876 963 1.843753 GCACGTGCAGTTTTTGTGTAC 59.156 47.619 34.52 0.00 41.59 2.90
877 964 2.181426 GCACGTGCAGTTTTTGTGTA 57.819 45.000 34.52 0.00 41.59 2.90
878 965 3.028760 GCACGTGCAGTTTTTGTGT 57.971 47.368 34.52 0.00 41.59 3.72
889 976 2.969443 AATTCTTGTAGTGCACGTGC 57.031 45.000 33.11 33.11 42.50 5.34
890 977 3.421888 GCAAAATTCTTGTAGTGCACGTG 59.578 43.478 12.28 12.28 32.29 4.49
891 978 3.315191 AGCAAAATTCTTGTAGTGCACGT 59.685 39.130 12.01 2.47 34.44 4.49
892 979 3.888934 AGCAAAATTCTTGTAGTGCACG 58.111 40.909 12.01 0.00 34.44 5.34
895 982 9.884465 CCTTATATAGCAAAATTCTTGTAGTGC 57.116 33.333 0.00 0.00 0.00 4.40
900 987 9.343539 GTCCTCCTTATATAGCAAAATTCTTGT 57.656 33.333 0.00 0.00 0.00 3.16
901 988 8.787852 GGTCCTCCTTATATAGCAAAATTCTTG 58.212 37.037 0.00 0.00 0.00 3.02
902 989 8.502738 TGGTCCTCCTTATATAGCAAAATTCTT 58.497 33.333 0.00 0.00 34.23 2.52
903 990 8.045720 TGGTCCTCCTTATATAGCAAAATTCT 57.954 34.615 0.00 0.00 34.23 2.40
904 991 8.691661 TTGGTCCTCCTTATATAGCAAAATTC 57.308 34.615 0.00 0.00 34.23 2.17
977 1065 9.275398 CCATTGTAAGTACTAAGTGGTTGTTTA 57.725 33.333 0.00 0.00 0.00 2.01
980 1068 5.704053 GCCATTGTAAGTACTAAGTGGTTGT 59.296 40.000 13.05 0.00 0.00 3.32
1048 1139 2.979676 TGTCGTCGGCGTAGTGGT 60.980 61.111 10.18 0.00 39.49 4.16
1198 1289 0.108186 TGGATCATGCGAGCGTTCTT 60.108 50.000 0.00 0.00 0.00 2.52
1371 1462 1.008194 TAAGTTGTCACGCGCGACT 60.008 52.632 39.36 25.81 36.82 4.18
1404 1495 1.524621 GTAGCCTGTCATGCGCCAT 60.525 57.895 4.18 0.00 0.00 4.40
1539 1631 0.307453 GTTGCGCAGACAATGACACA 59.693 50.000 11.31 0.00 0.00 3.72
1728 1823 1.005097 AGCACCTCTTTGATGCCATCA 59.995 47.619 2.53 2.53 40.33 3.07
1849 1944 0.619255 TCCGTACCACATGGACCCAT 60.619 55.000 4.53 0.00 37.41 4.00
1916 2011 1.207089 CTATGCGTCTCTTGGGGTCAA 59.793 52.381 0.00 0.00 0.00 3.18
1966 2061 2.978278 AGCCATTTTCACCCCATTTTGA 59.022 40.909 0.00 0.00 0.00 2.69
2225 2324 9.829507 AATCAAACATAAGAAGACAGATAGAGG 57.170 33.333 0.00 0.00 0.00 3.69
2244 2343 6.070710 AGGAGGGAGTAGTAGTGAAATCAAAC 60.071 42.308 0.00 0.00 0.00 2.93
2290 2389 6.821388 ACGCAGTCTTTATTGGAATCTCTAT 58.179 36.000 0.00 0.00 29.74 1.98
2306 2405 0.246635 ATTTGCTCCGTACGCAGTCT 59.753 50.000 10.49 0.00 43.93 3.24
2319 2418 5.999044 AGAGTATGGATTCACTCATTTGCT 58.001 37.500 4.70 0.00 42.99 3.91
2389 2488 9.392259 CCTCCGTTTCTAAATATAGGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2390 2489 7.991460 CCCTCCGTTTCTAAATATAGGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2391 2490 7.346436 TCCCTCCGTTTCTAAATATAGGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2392 2491 6.842807 TCCCTCCGTTTCTAAATATAGGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2393 2492 6.379579 TCCCTCCGTTTCTAAATATAGGTCT 58.620 40.000 0.00 0.00 0.00 3.85
2394 2493 6.661304 TCCCTCCGTTTCTAAATATAGGTC 57.339 41.667 0.00 0.00 0.00 3.85
2395 2494 7.072076 ACATTCCCTCCGTTTCTAAATATAGGT 59.928 37.037 0.00 0.00 0.00 3.08
2396 2495 7.450903 ACATTCCCTCCGTTTCTAAATATAGG 58.549 38.462 0.00 0.00 0.00 2.57
2397 2496 8.904099 AACATTCCCTCCGTTTCTAAATATAG 57.096 34.615 0.00 0.00 0.00 1.31
2399 2498 9.862149 AATAACATTCCCTCCGTTTCTAAATAT 57.138 29.630 0.00 0.00 0.00 1.28
2400 2499 9.689501 AAATAACATTCCCTCCGTTTCTAAATA 57.310 29.630 0.00 0.00 0.00 1.40
2401 2500 8.589701 AAATAACATTCCCTCCGTTTCTAAAT 57.410 30.769 0.00 0.00 0.00 1.40
2402 2501 9.689501 ATAAATAACATTCCCTCCGTTTCTAAA 57.310 29.630 0.00 0.00 0.00 1.85
2405 2504 9.689501 TTTATAAATAACATTCCCTCCGTTTCT 57.310 29.630 0.00 0.00 0.00 2.52
2408 2507 8.410912 GCTTTTATAAATAACATTCCCTCCGTT 58.589 33.333 0.00 0.00 0.00 4.44
2409 2508 7.778382 AGCTTTTATAAATAACATTCCCTCCGT 59.222 33.333 0.00 0.00 0.00 4.69
2410 2509 8.166422 AGCTTTTATAAATAACATTCCCTCCG 57.834 34.615 0.00 0.00 0.00 4.63
2411 2510 9.750125 CAAGCTTTTATAAATAACATTCCCTCC 57.250 33.333 0.00 0.00 0.00 4.30
2424 2523 9.691362 GATTCACCAAACTCAAGCTTTTATAAA 57.309 29.630 0.00 0.00 0.00 1.40
2473 2572 2.029828 GGTGAGACGCTGGATATAGGTG 60.030 54.545 0.00 0.00 0.00 4.00
2482 2581 1.215647 GTGTAGGGTGAGACGCTGG 59.784 63.158 3.71 0.00 41.73 4.85
2486 2585 1.471287 TCATTCGTGTAGGGTGAGACG 59.529 52.381 0.00 0.00 37.44 4.18
2549 2648 3.593328 ACCCTAAACCCTAAACCCTAACC 59.407 47.826 0.00 0.00 0.00 2.85
2550 2649 4.934797 ACCCTAAACCCTAAACCCTAAC 57.065 45.455 0.00 0.00 0.00 2.34
2551 2650 5.946644 AAACCCTAAACCCTAAACCCTAA 57.053 39.130 0.00 0.00 0.00 2.69
2552 2651 5.492162 CCTAAACCCTAAACCCTAAACCCTA 59.508 44.000 0.00 0.00 0.00 3.53
2553 2652 4.293102 CCTAAACCCTAAACCCTAAACCCT 59.707 45.833 0.00 0.00 0.00 4.34
2554 2653 4.570505 CCCTAAACCCTAAACCCTAAACCC 60.571 50.000 0.00 0.00 0.00 4.11
2555 2654 4.044571 ACCCTAAACCCTAAACCCTAAACC 59.955 45.833 0.00 0.00 0.00 3.27
2556 2655 5.222109 TGACCCTAAACCCTAAACCCTAAAC 60.222 44.000 0.00 0.00 0.00 2.01
2557 2656 4.918891 TGACCCTAAACCCTAAACCCTAAA 59.081 41.667 0.00 0.00 0.00 1.85
2558 2657 4.511304 TGACCCTAAACCCTAAACCCTAA 58.489 43.478 0.00 0.00 0.00 2.69
2559 2658 4.159104 TGACCCTAAACCCTAAACCCTA 57.841 45.455 0.00 0.00 0.00 3.53
2560 2659 3.008340 TGACCCTAAACCCTAAACCCT 57.992 47.619 0.00 0.00 0.00 4.34
2561 2660 3.267551 TCATGACCCTAAACCCTAAACCC 59.732 47.826 0.00 0.00 0.00 4.11
2562 2661 4.267536 GTCATGACCCTAAACCCTAAACC 58.732 47.826 15.31 0.00 0.00 3.27
2563 2662 4.267536 GGTCATGACCCTAAACCCTAAAC 58.732 47.826 31.37 3.54 45.68 2.01
2564 2663 4.579647 GGTCATGACCCTAAACCCTAAA 57.420 45.455 31.37 0.00 45.68 1.85
2577 2676 1.028868 GCTGCTCTTGGGGTCATGAC 61.029 60.000 17.91 17.91 0.00 3.06
2578 2677 1.300963 GCTGCTCTTGGGGTCATGA 59.699 57.895 0.00 0.00 0.00 3.07
2579 2678 1.751927 GGCTGCTCTTGGGGTCATG 60.752 63.158 0.00 0.00 0.00 3.07
2580 2679 2.679716 GGCTGCTCTTGGGGTCAT 59.320 61.111 0.00 0.00 0.00 3.06
2581 2680 3.650950 GGGCTGCTCTTGGGGTCA 61.651 66.667 0.00 0.00 0.00 4.02
2582 2681 4.432741 GGGGCTGCTCTTGGGGTC 62.433 72.222 0.00 0.00 0.00 4.46
2584 2683 2.276309 CTAAGGGGCTGCTCTTGGGG 62.276 65.000 15.25 5.70 0.00 4.96
2585 2684 1.225704 CTAAGGGGCTGCTCTTGGG 59.774 63.158 15.25 7.43 0.00 4.12
2586 2685 1.225704 CCTAAGGGGCTGCTCTTGG 59.774 63.158 15.25 12.92 0.00 3.61
2587 2686 0.107459 GTCCTAAGGGGCTGCTCTTG 60.107 60.000 15.25 8.06 33.70 3.02
2588 2687 0.547712 TGTCCTAAGGGGCTGCTCTT 60.548 55.000 0.00 6.74 38.23 2.85
2589 2688 0.980231 CTGTCCTAAGGGGCTGCTCT 60.980 60.000 0.00 0.00 38.23 4.09
2590 2689 1.524482 CTGTCCTAAGGGGCTGCTC 59.476 63.158 0.00 0.00 38.23 4.26
2591 2690 3.732938 CTGTCCTAAGGGGCTGCT 58.267 61.111 0.00 0.00 38.23 4.24
2593 2692 1.639635 ATGGCTGTCCTAAGGGGCTG 61.640 60.000 0.00 0.00 38.23 4.85
2594 2693 1.308216 ATGGCTGTCCTAAGGGGCT 60.308 57.895 0.00 0.00 38.23 5.19
2595 2694 1.149401 GATGGCTGTCCTAAGGGGC 59.851 63.158 0.00 0.00 37.81 5.80
2596 2695 0.988145 TGGATGGCTGTCCTAAGGGG 60.988 60.000 10.17 0.00 39.12 4.79
2597 2696 0.918983 TTGGATGGCTGTCCTAAGGG 59.081 55.000 10.17 0.00 39.12 3.95
2598 2697 2.808202 CGATTGGATGGCTGTCCTAAGG 60.808 54.545 10.17 0.00 39.12 2.69
2599 2698 2.487934 CGATTGGATGGCTGTCCTAAG 58.512 52.381 10.17 0.42 39.12 2.18
2600 2699 1.475034 GCGATTGGATGGCTGTCCTAA 60.475 52.381 10.17 4.68 39.12 2.69
2601 2700 0.106708 GCGATTGGATGGCTGTCCTA 59.893 55.000 10.17 4.10 39.12 2.94
2602 2701 1.153086 GCGATTGGATGGCTGTCCT 60.153 57.895 10.17 0.00 39.12 3.85
2603 2702 2.189499 GGCGATTGGATGGCTGTCC 61.189 63.158 3.00 3.00 38.81 4.02
2604 2703 1.031571 TTGGCGATTGGATGGCTGTC 61.032 55.000 0.00 0.00 34.17 3.51
2605 2704 0.611618 TTTGGCGATTGGATGGCTGT 60.612 50.000 0.00 0.00 34.17 4.40
2606 2705 0.531657 TTTTGGCGATTGGATGGCTG 59.468 50.000 0.00 0.00 34.17 4.85
2607 2706 1.265236 TTTTTGGCGATTGGATGGCT 58.735 45.000 0.00 0.00 34.17 4.75
2608 2707 1.935199 CATTTTTGGCGATTGGATGGC 59.065 47.619 0.00 0.00 0.00 4.40
2609 2708 3.523606 TCATTTTTGGCGATTGGATGG 57.476 42.857 0.00 0.00 0.00 3.51
2610 2709 3.732219 CGATCATTTTTGGCGATTGGATG 59.268 43.478 0.00 0.00 0.00 3.51
2611 2710 3.243501 CCGATCATTTTTGGCGATTGGAT 60.244 43.478 0.00 0.00 41.51 3.41
2612 2711 2.098934 CCGATCATTTTTGGCGATTGGA 59.901 45.455 0.00 0.00 41.51 3.53
2613 2712 2.462889 CCGATCATTTTTGGCGATTGG 58.537 47.619 0.00 0.00 35.00 3.16
2614 2713 2.462889 CCCGATCATTTTTGGCGATTG 58.537 47.619 0.00 0.00 0.00 2.67
2615 2714 1.408702 CCCCGATCATTTTTGGCGATT 59.591 47.619 0.00 0.00 0.00 3.34
2616 2715 1.032014 CCCCGATCATTTTTGGCGAT 58.968 50.000 0.00 0.00 0.00 4.58
2617 2716 1.662438 GCCCCGATCATTTTTGGCGA 61.662 55.000 0.00 0.00 0.00 5.54
2618 2717 1.226945 GCCCCGATCATTTTTGGCG 60.227 57.895 0.00 0.00 0.00 5.69
2619 2718 1.143838 GGCCCCGATCATTTTTGGC 59.856 57.895 0.00 0.00 38.16 4.52
2620 2719 1.822615 GGGCCCCGATCATTTTTGG 59.177 57.895 12.23 0.00 0.00 3.28
2632 2731 0.108019 AAATTACGATCTCGGGCCCC 59.892 55.000 18.66 0.00 44.95 5.80
2633 2732 1.963172 AAAATTACGATCTCGGGCCC 58.037 50.000 13.57 13.57 44.95 5.80
2634 2733 5.268544 GTTTTAAAATTACGATCTCGGGCC 58.731 41.667 3.52 0.00 44.95 5.80
2635 2734 4.959757 CGTTTTAAAATTACGATCTCGGGC 59.040 41.667 3.52 0.00 44.95 6.13
2636 2735 6.180567 GTCGTTTTAAAATTACGATCTCGGG 58.819 40.000 14.65 0.00 44.81 5.14
2637 2736 6.754206 TGTCGTTTTAAAATTACGATCTCGG 58.246 36.000 14.65 0.00 44.81 4.63
2638 2737 8.801553 AATGTCGTTTTAAAATTACGATCTCG 57.198 30.769 14.65 6.26 44.81 4.04
2672 2771 7.994425 TGATTCCAAGATTAGTTGTGCTTAA 57.006 32.000 0.00 0.00 0.00 1.85
2733 2832 3.062639 CGTGCACTCATGTCCTATTTGAC 59.937 47.826 16.19 0.00 35.77 3.18
2734 2833 3.261580 CGTGCACTCATGTCCTATTTGA 58.738 45.455 16.19 0.00 0.00 2.69
2735 2834 3.002791 ACGTGCACTCATGTCCTATTTG 58.997 45.455 16.19 0.00 37.94 2.32
2736 2835 3.334583 ACGTGCACTCATGTCCTATTT 57.665 42.857 16.19 0.00 37.94 1.40
2737 2836 3.194755 TGTACGTGCACTCATGTCCTATT 59.805 43.478 16.19 0.00 41.28 1.73
2738 2837 2.758423 TGTACGTGCACTCATGTCCTAT 59.242 45.455 16.19 0.00 41.28 2.57
2739 2838 2.094906 GTGTACGTGCACTCATGTCCTA 60.095 50.000 26.79 0.00 41.28 2.94
2740 2839 0.966179 TGTACGTGCACTCATGTCCT 59.034 50.000 16.19 0.00 41.28 3.85
2741 2840 1.068474 GTGTACGTGCACTCATGTCC 58.932 55.000 26.79 0.20 41.28 4.02
2742 2841 1.778334 TGTGTACGTGCACTCATGTC 58.222 50.000 31.94 9.45 41.28 3.06
2743 2842 2.232756 TTGTGTACGTGCACTCATGT 57.767 45.000 31.94 7.82 44.17 3.21
2744 2843 3.811722 AATTGTGTACGTGCACTCATG 57.188 42.857 31.94 1.10 39.89 3.07
2745 2844 4.566004 AGTAATTGTGTACGTGCACTCAT 58.434 39.130 31.94 22.29 39.89 2.90
2746 2845 3.985008 AGTAATTGTGTACGTGCACTCA 58.015 40.909 31.94 21.21 39.89 3.41
2747 2846 5.159209 AGTAGTAATTGTGTACGTGCACTC 58.841 41.667 31.94 18.46 39.89 3.51
2748 2847 5.048224 AGAGTAGTAATTGTGTACGTGCACT 60.048 40.000 31.94 17.99 39.89 4.40
2749 2848 5.159209 AGAGTAGTAATTGTGTACGTGCAC 58.841 41.667 27.24 27.24 39.65 4.57
2750 2849 5.381174 AGAGTAGTAATTGTGTACGTGCA 57.619 39.130 0.82 0.82 0.00 4.57
2751 2850 7.982371 ATAAGAGTAGTAATTGTGTACGTGC 57.018 36.000 0.00 0.00 0.00 5.34
2775 2874 9.064706 CGGTTTTCTACTGTCCTAGATAAGATA 57.935 37.037 0.00 0.00 0.00 1.98
2776 2875 7.778853 TCGGTTTTCTACTGTCCTAGATAAGAT 59.221 37.037 0.00 0.00 34.56 2.40
2777 2876 7.114754 TCGGTTTTCTACTGTCCTAGATAAGA 58.885 38.462 0.00 0.00 34.56 2.10
2778 2877 7.330900 TCGGTTTTCTACTGTCCTAGATAAG 57.669 40.000 0.00 0.00 34.56 1.73
2779 2878 6.183360 GCTCGGTTTTCTACTGTCCTAGATAA 60.183 42.308 0.00 0.00 34.56 1.75
2780 2879 5.298777 GCTCGGTTTTCTACTGTCCTAGATA 59.701 44.000 0.00 0.00 34.56 1.98
2781 2880 4.098196 GCTCGGTTTTCTACTGTCCTAGAT 59.902 45.833 0.00 0.00 34.56 1.98
2782 2881 3.442977 GCTCGGTTTTCTACTGTCCTAGA 59.557 47.826 0.00 0.00 34.56 2.43
2783 2882 3.429135 GGCTCGGTTTTCTACTGTCCTAG 60.429 52.174 0.00 0.00 34.56 3.02
2784 2883 2.494870 GGCTCGGTTTTCTACTGTCCTA 59.505 50.000 0.00 0.00 34.56 2.94
2785 2884 1.275573 GGCTCGGTTTTCTACTGTCCT 59.724 52.381 0.00 0.00 34.56 3.85
2786 2885 1.001633 TGGCTCGGTTTTCTACTGTCC 59.998 52.381 0.00 0.00 34.56 4.02
2787 2886 2.450609 TGGCTCGGTTTTCTACTGTC 57.549 50.000 0.00 0.00 34.56 3.51
2788 2887 2.922740 TTGGCTCGGTTTTCTACTGT 57.077 45.000 0.00 0.00 34.56 3.55
2789 2888 3.609409 GCTTTTGGCTCGGTTTTCTACTG 60.609 47.826 0.00 0.00 38.06 2.74
2790 2889 2.552743 GCTTTTGGCTCGGTTTTCTACT 59.447 45.455 0.00 0.00 38.06 2.57
2791 2890 2.929960 GCTTTTGGCTCGGTTTTCTAC 58.070 47.619 0.00 0.00 38.06 2.59
2803 2902 0.035056 TGAGAGGGCTAGCTTTTGGC 60.035 55.000 15.72 0.00 42.19 4.52
2804 2903 1.407989 CCTGAGAGGGCTAGCTTTTGG 60.408 57.143 15.72 4.65 0.00 3.28
2805 2904 2.035530 CCTGAGAGGGCTAGCTTTTG 57.964 55.000 15.72 0.00 0.00 2.44
2815 2914 1.142748 CGCTTAGTGCCTGAGAGGG 59.857 63.158 0.00 0.00 38.78 4.30
2816 2915 0.749649 ATCGCTTAGTGCCTGAGAGG 59.250 55.000 0.00 0.00 38.78 3.69
2817 2916 2.593346 AATCGCTTAGTGCCTGAGAG 57.407 50.000 0.00 0.00 38.78 3.20
2818 2917 3.262420 GAAAATCGCTTAGTGCCTGAGA 58.738 45.455 0.00 0.00 38.78 3.27
2819 2918 2.029728 CGAAAATCGCTTAGTGCCTGAG 59.970 50.000 0.00 0.00 38.78 3.35
2820 2919 1.999735 CGAAAATCGCTTAGTGCCTGA 59.000 47.619 0.00 0.00 38.78 3.86
2821 2920 1.732259 ACGAAAATCGCTTAGTGCCTG 59.268 47.619 0.00 0.00 45.12 4.85
2822 2921 2.000447 GACGAAAATCGCTTAGTGCCT 59.000 47.619 0.00 0.00 45.12 4.75
2823 2922 1.266891 CGACGAAAATCGCTTAGTGCC 60.267 52.381 0.00 0.00 45.12 5.01
2824 2923 1.389106 ACGACGAAAATCGCTTAGTGC 59.611 47.619 0.00 0.00 45.12 4.40
2825 2924 2.659757 TGACGACGAAAATCGCTTAGTG 59.340 45.455 0.00 0.00 45.12 2.74
2826 2925 2.915463 CTGACGACGAAAATCGCTTAGT 59.085 45.455 0.00 0.00 45.12 2.24
2827 2926 3.168963 TCTGACGACGAAAATCGCTTAG 58.831 45.455 0.00 0.00 45.12 2.18
2828 2927 3.206034 TCTGACGACGAAAATCGCTTA 57.794 42.857 0.00 0.00 45.12 3.09
2829 2928 2.060326 TCTGACGACGAAAATCGCTT 57.940 45.000 0.00 0.00 45.12 4.68
2830 2929 2.159366 AGATCTGACGACGAAAATCGCT 60.159 45.455 0.00 0.00 45.12 4.93
2831 2930 2.186076 AGATCTGACGACGAAAATCGC 58.814 47.619 0.00 0.00 45.12 4.58
2833 2932 2.784380 CCGAGATCTGACGACGAAAATC 59.216 50.000 0.00 0.00 0.00 2.17
2834 2933 2.479730 CCCGAGATCTGACGACGAAAAT 60.480 50.000 0.00 0.00 0.00 1.82
2835 2934 1.135489 CCCGAGATCTGACGACGAAAA 60.135 52.381 0.00 0.00 0.00 2.29
2836 2935 0.450583 CCCGAGATCTGACGACGAAA 59.549 55.000 0.00 0.00 0.00 3.46
2837 2936 0.675837 ACCCGAGATCTGACGACGAA 60.676 55.000 0.00 0.00 0.00 3.85
2838 2937 1.078637 ACCCGAGATCTGACGACGA 60.079 57.895 0.00 0.00 0.00 4.20
2839 2938 1.352404 GACCCGAGATCTGACGACG 59.648 63.158 0.00 0.00 0.00 5.12
2840 2939 1.726533 GGGACCCGAGATCTGACGAC 61.727 65.000 0.00 0.00 0.00 4.34
2841 2940 1.453379 GGGACCCGAGATCTGACGA 60.453 63.158 0.00 0.00 0.00 4.20
2842 2941 3.121019 GGGACCCGAGATCTGACG 58.879 66.667 0.00 0.00 0.00 4.35
2853 2952 0.459899 GCCAAAAATGATCGGGACCC 59.540 55.000 0.00 0.00 0.00 4.46
2854 2953 0.100503 CGCCAAAAATGATCGGGACC 59.899 55.000 0.00 0.00 0.00 4.46
2855 2954 1.091537 TCGCCAAAAATGATCGGGAC 58.908 50.000 0.00 0.00 0.00 4.46
2856 2955 2.051334 ATCGCCAAAAATGATCGGGA 57.949 45.000 0.00 0.00 0.00 5.14
2857 2956 2.462889 CAATCGCCAAAAATGATCGGG 58.537 47.619 0.00 0.00 0.00 5.14
2858 2957 2.098934 TCCAATCGCCAAAAATGATCGG 59.901 45.455 0.00 0.00 0.00 4.18
2859 2958 3.419264 TCCAATCGCCAAAAATGATCG 57.581 42.857 0.00 0.00 0.00 3.69
2865 2964 1.067000 CAGCCATCCAATCGCCAAAAA 60.067 47.619 0.00 0.00 0.00 1.94
2870 2969 2.189499 GGACAGCCATCCAATCGCC 61.189 63.158 0.00 0.00 38.77 5.54
2873 2972 2.487986 CCCTTAGGACAGCCATCCAATC 60.488 54.545 0.00 0.00 41.73 2.67
2874 2973 1.496429 CCCTTAGGACAGCCATCCAAT 59.504 52.381 0.00 0.00 41.73 3.16
2876 2975 0.988145 CCCCTTAGGACAGCCATCCA 60.988 60.000 0.00 0.00 41.73 3.41
2965 3064 4.590222 TGGAAAGTTAGGGTTAGTCGTTCT 59.410 41.667 0.00 0.00 0.00 3.01
2980 3079 8.143835 CCAATAAACACAGAAAGATGGAAAGTT 58.856 33.333 0.00 0.00 0.00 2.66
2981 3080 7.661040 CCAATAAACACAGAAAGATGGAAAGT 58.339 34.615 0.00 0.00 0.00 2.66
2982 3081 6.587608 GCCAATAAACACAGAAAGATGGAAAG 59.412 38.462 0.00 0.00 0.00 2.62
2983 3082 6.454795 GCCAATAAACACAGAAAGATGGAAA 58.545 36.000 0.00 0.00 0.00 3.13
2984 3083 5.335583 CGCCAATAAACACAGAAAGATGGAA 60.336 40.000 0.00 0.00 0.00 3.53
2985 3084 4.155826 CGCCAATAAACACAGAAAGATGGA 59.844 41.667 0.00 0.00 0.00 3.41
2986 3085 4.414852 CGCCAATAAACACAGAAAGATGG 58.585 43.478 0.00 0.00 0.00 3.51
2987 3086 4.082787 ACCGCCAATAAACACAGAAAGATG 60.083 41.667 0.00 0.00 0.00 2.90
2988 3087 4.079253 ACCGCCAATAAACACAGAAAGAT 58.921 39.130 0.00 0.00 0.00 2.40
2989 3088 3.482436 ACCGCCAATAAACACAGAAAGA 58.518 40.909 0.00 0.00 0.00 2.52
2990 3089 3.365969 GGACCGCCAATAAACACAGAAAG 60.366 47.826 0.00 0.00 0.00 2.62
2991 3090 2.554893 GGACCGCCAATAAACACAGAAA 59.445 45.455 0.00 0.00 0.00 2.52
2992 3091 2.156098 GGACCGCCAATAAACACAGAA 58.844 47.619 0.00 0.00 0.00 3.02
2993 3092 1.612199 GGGACCGCCAATAAACACAGA 60.612 52.381 0.00 0.00 35.15 3.41
2994 3093 0.808755 GGGACCGCCAATAAACACAG 59.191 55.000 0.00 0.00 35.15 3.66
2995 3094 0.110678 TGGGACCGCCAATAAACACA 59.889 50.000 0.00 0.00 35.15 3.72
2996 3095 0.808755 CTGGGACCGCCAATAAACAC 59.191 55.000 0.00 0.00 35.15 3.32
2997 3096 0.322997 CCTGGGACCGCCAATAAACA 60.323 55.000 0.00 0.00 35.15 2.83
2998 3097 0.323087 ACCTGGGACCGCCAATAAAC 60.323 55.000 0.00 0.00 35.15 2.01
2999 3098 0.322997 CACCTGGGACCGCCAATAAA 60.323 55.000 0.00 0.00 35.15 1.40
3000 3099 1.202099 TCACCTGGGACCGCCAATAA 61.202 55.000 0.00 0.00 35.15 1.40
3001 3100 1.613928 TCACCTGGGACCGCCAATA 60.614 57.895 0.00 0.00 35.15 1.90
3002 3101 2.933287 TCACCTGGGACCGCCAAT 60.933 61.111 0.00 0.00 35.15 3.16
3003 3102 3.948719 GTCACCTGGGACCGCCAA 61.949 66.667 0.00 0.00 35.15 4.52
3004 3103 4.954118 AGTCACCTGGGACCGCCA 62.954 66.667 10.50 0.00 38.59 5.69
3005 3104 4.394712 CAGTCACCTGGGACCGCC 62.395 72.222 10.50 0.00 38.59 6.13
3013 3112 1.004080 CTGCTCACCCAGTCACCTG 60.004 63.158 0.00 0.00 38.50 4.00
3014 3113 1.460305 ACTGCTCACCCAGTCACCT 60.460 57.895 0.00 0.00 42.10 4.00
3015 3114 3.151906 ACTGCTCACCCAGTCACC 58.848 61.111 0.00 0.00 42.10 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.