Multiple sequence alignment - TraesCS6A01G033700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G033700 chr6A 100.000 3019 0 0 1 3019 16461732 16458714 0.000000e+00 5576.0
1 TraesCS6A01G033700 chr6A 100.000 2340 0 0 3204 5543 16458529 16456190 0.000000e+00 4322.0
2 TraesCS6A01G033700 chr6A 89.677 310 24 1 4327 4628 16467123 16466814 6.730000e-104 388.0
3 TraesCS6A01G033700 chr6D 88.571 2275 168 49 490 2710 16197219 16194983 0.000000e+00 2676.0
4 TraesCS6A01G033700 chr6D 87.957 2051 125 56 3278 5266 16192093 16190103 0.000000e+00 2307.0
5 TraesCS6A01G033700 chr6D 83.123 794 92 23 4027 4794 16380584 16381361 0.000000e+00 686.0
6 TraesCS6A01G033700 chr6D 91.613 310 18 1 4327 4628 16232612 16232303 6.640000e-114 422.0
7 TraesCS6A01G033700 chr6D 93.985 133 6 2 69 200 16198119 16197988 3.390000e-47 200.0
8 TraesCS6A01G033700 chr6D 80.515 272 41 6 4800 5061 16384008 16384277 1.220000e-46 198.0
9 TraesCS6A01G033700 chr6D 85.496 131 11 4 2787 2913 16192337 16192211 4.510000e-26 130.0
10 TraesCS6A01G033700 chr6D 80.814 172 20 9 5382 5543 445849417 445849585 7.540000e-24 122.0
11 TraesCS6A01G033700 chr6D 93.617 47 3 0 2735 2781 16192413 16192367 2.770000e-08 71.3
12 TraesCS6A01G033700 chr6D 78.182 110 17 7 5437 5543 450431248 450431353 4.640000e-06 63.9
13 TraesCS6A01G033700 chr6B 91.185 1815 93 25 3278 5066 28004893 28006666 0.000000e+00 2403.0
14 TraesCS6A01G033700 chr6B 90.249 1846 129 26 969 2790 28002470 28004288 0.000000e+00 2364.0
15 TraesCS6A01G033700 chr6B 91.974 1520 95 13 3737 5241 27942397 27940890 0.000000e+00 2106.0
16 TraesCS6A01G033700 chr6B 91.599 1476 92 9 1340 2789 27944703 27943234 0.000000e+00 2010.0
17 TraesCS6A01G033700 chr6B 82.337 1087 117 29 4030 5069 59301537 59300479 0.000000e+00 874.0
18 TraesCS6A01G033700 chr6B 82.342 1059 132 28 4031 5054 28945116 28944078 0.000000e+00 869.0
19 TraesCS6A01G033700 chr6B 83.112 829 91 23 4030 4831 28724981 28724175 0.000000e+00 710.0
20 TraesCS6A01G033700 chr6B 86.745 596 67 4 1951 2546 27996698 27997281 0.000000e+00 652.0
21 TraesCS6A01G033700 chr6B 85.885 503 21 17 3278 3753 27942943 27942464 1.790000e-134 490.0
22 TraesCS6A01G033700 chr6B 81.746 378 44 13 1289 1652 27995804 27996170 5.430000e-75 292.0
23 TraesCS6A01G033700 chr6B 82.332 283 32 16 893 1170 27945075 27944806 4.320000e-56 230.0
24 TraesCS6A01G033700 chr6B 94.262 122 6 1 2793 2913 27943199 27943078 9.480000e-43 185.0
25 TraesCS6A01G033700 chr6B 89.844 128 3 2 2787 2913 28004316 28004434 7.430000e-34 156.0
26 TraesCS6A01G033700 chr6B 93.814 97 6 0 4965 5061 28511189 28511285 4.470000e-31 147.0
27 TraesCS6A01G033700 chr6B 86.014 143 9 7 60 201 27946073 27945941 5.790000e-30 143.0
28 TraesCS6A01G033700 chr6B 92.784 97 7 0 4965 5061 28724009 28723913 2.080000e-29 141.0
29 TraesCS6A01G033700 chr6B 79.024 205 28 13 1 200 28000092 28000286 5.830000e-25 126.0
30 TraesCS6A01G033700 chr6B 75.949 316 31 17 5232 5540 28010549 28010826 2.710000e-23 121.0
31 TraesCS6A01G033700 chr6B 79.762 168 22 9 5382 5543 673618253 673618092 1.630000e-20 111.0
32 TraesCS6A01G033700 chr6B 93.939 66 4 0 893 958 28002360 28002425 3.530000e-17 100.0
33 TraesCS6A01G033700 chr6B 83.951 81 12 1 5460 5540 507681823 507681902 5.950000e-10 76.8
34 TraesCS6A01G033700 chr6B 83.951 81 10 3 3207 3285 175734449 175734528 2.140000e-09 75.0
35 TraesCS6A01G033700 chr2B 89.700 1835 119 21 969 2769 46602161 46600363 0.000000e+00 2278.0
36 TraesCS6A01G033700 chr2B 89.153 1346 73 22 3278 4593 46596781 46595479 0.000000e+00 1609.0
37 TraesCS6A01G033700 chr2B 88.657 670 66 10 4600 5266 46595369 46594707 0.000000e+00 808.0
38 TraesCS6A01G033700 chr2B 92.424 66 5 0 893 958 46602269 46602204 1.640000e-15 95.3
39 TraesCS6A01G033700 chr2B 88.525 61 6 1 3230 3290 297592841 297592782 7.700000e-09 73.1
40 TraesCS6A01G033700 chr2B 97.436 39 1 0 489 527 46602547 46602509 3.580000e-07 67.6
41 TraesCS6A01G033700 chr1D 82.747 1733 236 35 999 2685 313216278 313214563 0.000000e+00 1485.0
42 TraesCS6A01G033700 chr1D 100.000 39 0 0 5502 5540 493785552 493785590 7.700000e-09 73.1
43 TraesCS6A01G033700 chr1B 82.366 1741 228 43 999 2685 423593218 423591503 0.000000e+00 1441.0
44 TraesCS6A01G033700 chr1B 81.603 973 121 27 4031 4966 587495698 587496649 0.000000e+00 752.0
45 TraesCS6A01G033700 chr1B 83.544 79 10 3 3208 3286 674604454 674604379 2.770000e-08 71.3
46 TraesCS6A01G033700 chr1A 81.876 1727 236 45 999 2671 392786746 392785043 0.000000e+00 1384.0
47 TraesCS6A01G033700 chr1A 90.164 61 3 3 3236 3294 84197821 84197880 5.950000e-10 76.8
48 TraesCS6A01G033700 chr2D 88.889 72 7 1 5466 5537 72964911 72964981 2.750000e-13 87.9
49 TraesCS6A01G033700 chr3B 85.526 76 9 2 5459 5533 652493186 652493260 1.660000e-10 78.7
50 TraesCS6A01G033700 chr3B 100.000 28 0 0 666 693 788250647 788250674 1.000000e-02 52.8
51 TraesCS6A01G033700 chr7B 92.593 54 1 3 3236 3287 652529434 652529486 2.140000e-09 75.0
52 TraesCS6A01G033700 chr7A 92.593 54 1 3 3236 3287 154171561 154171613 2.140000e-09 75.0
53 TraesCS6A01G033700 chr7A 86.885 61 8 0 3230 3290 637959474 637959414 9.960000e-08 69.4
54 TraesCS6A01G033700 chr3A 88.060 67 3 5 3230 3294 265892130 265892193 2.140000e-09 75.0
55 TraesCS6A01G033700 chr4A 88.333 60 6 1 3230 3288 431229394 431229453 2.770000e-08 71.3
56 TraesCS6A01G033700 chr4A 80.208 96 13 6 5445 5538 206246 206337 3.580000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G033700 chr6A 16456190 16461732 5542 True 4949.000000 5576 100.000000 1 5543 2 chr6A.!!$R2 5542
1 TraesCS6A01G033700 chr6D 16190103 16198119 8016 True 1076.860000 2676 89.925200 69 5266 5 chr6D.!!$R2 5197
2 TraesCS6A01G033700 chr6D 16380584 16384277 3693 False 442.000000 686 81.819000 4027 5061 2 chr6D.!!$F3 1034
3 TraesCS6A01G033700 chr6B 59300479 59301537 1058 True 874.000000 874 82.337000 4030 5069 1 chr6B.!!$R2 1039
4 TraesCS6A01G033700 chr6B 28944078 28945116 1038 True 869.000000 869 82.342000 4031 5054 1 chr6B.!!$R1 1023
5 TraesCS6A01G033700 chr6B 27940890 27946073 5183 True 860.666667 2106 88.677667 60 5241 6 chr6B.!!$R4 5181
6 TraesCS6A01G033700 chr6B 27995804 28010826 15022 False 776.750000 2403 86.085125 1 5540 8 chr6B.!!$F4 5539
7 TraesCS6A01G033700 chr6B 28723913 28724981 1068 True 425.500000 710 87.948000 4030 5061 2 chr6B.!!$R5 1031
8 TraesCS6A01G033700 chr2B 46594707 46602547 7840 True 971.580000 2278 91.474000 489 5266 5 chr2B.!!$R2 4777
9 TraesCS6A01G033700 chr1D 313214563 313216278 1715 True 1485.000000 1485 82.747000 999 2685 1 chr1D.!!$R1 1686
10 TraesCS6A01G033700 chr1B 423591503 423593218 1715 True 1441.000000 1441 82.366000 999 2685 1 chr1B.!!$R1 1686
11 TraesCS6A01G033700 chr1B 587495698 587496649 951 False 752.000000 752 81.603000 4031 4966 1 chr1B.!!$F1 935
12 TraesCS6A01G033700 chr1A 392785043 392786746 1703 True 1384.000000 1384 81.876000 999 2671 1 chr1A.!!$R1 1672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 4964 0.170561 GCATTTGAGCTCAGGTGCAG 59.829 55.0 32.97 17.92 37.72 4.41 F
470 5291 0.386113 CCGCCCTCTTCTGTAGTAGC 59.614 60.0 0.00 0.00 0.00 3.58 F
1241 7174 0.469144 GTTTCCCAGCCCACCAAGAA 60.469 55.0 0.00 0.00 0.00 2.52 F
2951 14924 0.035343 GCTTTAGAGTCCCCCACCAC 60.035 60.0 0.00 0.00 0.00 4.16 F
2964 14937 0.038343 CCACCACAAAAGGCGGATTG 60.038 55.0 0.00 0.00 32.38 2.67 F
2975 14948 0.814457 GGCGGATTGTTGTTGCCATA 59.186 50.0 0.00 0.00 45.06 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 7718 0.173708 GATGAACTCGACCCTTCGCT 59.826 55.000 0.00 0.00 45.46 4.93 R
2424 8429 0.108585 GTGCCAAACTCCTCACTGGA 59.891 55.000 0.00 0.00 43.86 3.86 R
2953 14926 0.033366 GGCAACAACAATCCGCCTTT 59.967 50.000 0.00 0.00 39.73 3.11 R
4304 16545 0.555769 TCTTGGCCACTTCCTTGGTT 59.444 50.000 3.88 0.00 39.09 3.67 R
4510 16758 1.588824 TTCTGCAAGGCATCCAAGCG 61.589 55.000 0.00 0.00 38.13 4.68 R
4807 19826 3.500343 ACTTCTTGGTAAAGCTTGCCAT 58.500 40.909 19.70 5.89 45.05 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 4317 5.333187 CGATATTTGATCTGCTCTCTTGCAC 60.333 44.000 0.00 0.00 38.12 4.57
34 4323 3.797451 TCTGCTCTCTTGCACTATCTG 57.203 47.619 0.00 0.00 38.12 2.90
48 4337 2.639839 ACTATCTGGCAGACAAAGTGGT 59.360 45.455 21.37 8.84 0.00 4.16
51 4340 1.211703 TCTGGCAGACAAAGTGGTCAA 59.788 47.619 14.43 0.00 40.29 3.18
52 4341 2.158623 TCTGGCAGACAAAGTGGTCAAT 60.159 45.455 14.43 0.00 40.29 2.57
59 4348 5.221048 GCAGACAAAGTGGTCAATAACAACT 60.221 40.000 0.00 0.00 44.55 3.16
118 4420 0.734253 CTACACTCACTGTCTGCGCC 60.734 60.000 4.18 0.00 33.91 6.53
191 4494 7.604164 GCCATGTTTATGCTACACTATATCTGT 59.396 37.037 0.00 0.00 32.79 3.41
231 4537 2.749044 ACTGGCTGCCATGCGAAG 60.749 61.111 23.64 11.87 30.82 3.79
239 4545 0.820482 TGCCATGCGAAGATGATGGG 60.820 55.000 0.00 0.00 37.67 4.00
240 4546 1.954528 CCATGCGAAGATGATGGGC 59.045 57.895 0.00 0.00 34.14 5.36
241 4547 0.820482 CCATGCGAAGATGATGGGCA 60.820 55.000 0.00 0.00 38.09 5.36
242 4548 0.591659 CATGCGAAGATGATGGGCAG 59.408 55.000 0.00 0.00 37.01 4.85
244 4550 0.829990 TGCGAAGATGATGGGCAGTA 59.170 50.000 0.00 0.00 0.00 2.74
246 4552 2.072298 GCGAAGATGATGGGCAGTATC 58.928 52.381 0.00 0.00 0.00 2.24
248 4554 2.029918 CGAAGATGATGGGCAGTATCGA 60.030 50.000 0.00 0.00 33.20 3.59
249 4555 3.583806 GAAGATGATGGGCAGTATCGAG 58.416 50.000 0.00 0.00 0.00 4.04
252 4558 2.073252 TGATGGGCAGTATCGAGTCT 57.927 50.000 0.00 0.00 0.00 3.24
253 4559 2.388735 TGATGGGCAGTATCGAGTCTT 58.611 47.619 0.00 0.00 0.00 3.01
254 4560 2.766263 TGATGGGCAGTATCGAGTCTTT 59.234 45.455 0.00 0.00 0.00 2.52
255 4561 3.197766 TGATGGGCAGTATCGAGTCTTTT 59.802 43.478 0.00 0.00 0.00 2.27
281 4587 8.641499 TTTTTGCCACGATTTCCATAAATATC 57.359 30.769 0.00 0.00 35.41 1.63
283 4589 4.454161 TGCCACGATTTCCATAAATATCCG 59.546 41.667 0.00 0.00 35.41 4.18
284 4590 4.454504 GCCACGATTTCCATAAATATCCGT 59.545 41.667 0.00 0.00 35.41 4.69
285 4591 5.048991 GCCACGATTTCCATAAATATCCGTT 60.049 40.000 0.00 0.00 35.41 4.44
286 4592 6.599437 CCACGATTTCCATAAATATCCGTTC 58.401 40.000 0.00 0.00 35.41 3.95
287 4593 6.296605 CACGATTTCCATAAATATCCGTTCG 58.703 40.000 0.00 0.00 35.41 3.95
289 4595 6.073980 ACGATTTCCATAAATATCCGTTCGTG 60.074 38.462 0.00 0.00 35.41 4.35
292 4598 9.146984 GATTTCCATAAATATCCGTTCGTGATA 57.853 33.333 6.11 6.11 35.41 2.15
293 4599 8.890124 TTTCCATAAATATCCGTTCGTGATAA 57.110 30.769 7.19 0.00 0.00 1.75
295 4601 9.496873 TTCCATAAATATCCGTTCGTGATAAAT 57.503 29.630 7.19 3.94 0.00 1.40
296 4602 9.496873 TCCATAAATATCCGTTCGTGATAAATT 57.503 29.630 7.19 7.92 0.00 1.82
312 4618 3.822594 AAATTTTCACGAGCGCATACA 57.177 38.095 11.47 0.00 0.00 2.29
313 4619 3.822594 AATTTTCACGAGCGCATACAA 57.177 38.095 11.47 0.00 0.00 2.41
314 4620 2.587612 TTTTCACGAGCGCATACAAC 57.412 45.000 11.47 0.00 0.00 3.32
315 4621 1.503294 TTTCACGAGCGCATACAACA 58.497 45.000 11.47 0.00 0.00 3.33
321 4627 2.159707 ACGAGCGCATACAACATTTGTC 60.160 45.455 11.47 0.00 44.12 3.18
328 4634 4.981674 CGCATACAACATTTGTCAAAGGTT 59.018 37.500 19.74 19.74 45.16 3.50
330 4636 6.087555 CGCATACAACATTTGTCAAAGGTTAC 59.912 38.462 23.58 12.37 42.75 2.50
332 4638 8.293867 GCATACAACATTTGTCAAAGGTTACTA 58.706 33.333 23.58 16.91 42.75 1.82
333 4639 9.607285 CATACAACATTTGTCAAAGGTTACTAC 57.393 33.333 23.58 0.00 42.75 2.73
334 4640 7.633193 ACAACATTTGTCAAAGGTTACTACA 57.367 32.000 23.58 0.00 42.75 2.74
335 4641 8.057536 ACAACATTTGTCAAAGGTTACTACAA 57.942 30.769 23.58 0.00 42.75 2.41
336 4642 8.524487 ACAACATTTGTCAAAGGTTACTACAAA 58.476 29.630 23.58 5.56 42.75 2.83
344 4650 9.959749 TGTCAAAGGTTACTACAAAAATGATTC 57.040 29.630 0.00 0.00 0.00 2.52
395 4943 9.694137 TTTTTATTGATTTTACTGTTTACCGGG 57.306 29.630 6.32 0.00 0.00 5.73
396 4944 8.632906 TTTATTGATTTTACTGTTTACCGGGA 57.367 30.769 6.32 0.00 0.00 5.14
397 4945 6.753107 ATTGATTTTACTGTTTACCGGGAG 57.247 37.500 6.32 0.00 0.00 4.30
398 4946 4.004982 TGATTTTACTGTTTACCGGGAGC 58.995 43.478 6.32 0.00 0.00 4.70
399 4947 3.488778 TTTTACTGTTTACCGGGAGCA 57.511 42.857 6.32 0.90 0.00 4.26
400 4948 3.706600 TTTACTGTTTACCGGGAGCAT 57.293 42.857 6.32 0.00 0.00 3.79
401 4949 3.706600 TTACTGTTTACCGGGAGCATT 57.293 42.857 6.32 0.00 0.00 3.56
402 4950 2.579410 ACTGTTTACCGGGAGCATTT 57.421 45.000 6.32 0.00 0.00 2.32
403 4951 2.159382 ACTGTTTACCGGGAGCATTTG 58.841 47.619 6.32 0.00 0.00 2.32
404 4952 2.224670 ACTGTTTACCGGGAGCATTTGA 60.225 45.455 6.32 0.00 0.00 2.69
405 4953 2.420022 CTGTTTACCGGGAGCATTTGAG 59.580 50.000 6.32 0.00 0.00 3.02
406 4954 1.132453 GTTTACCGGGAGCATTTGAGC 59.868 52.381 6.32 0.00 0.00 4.26
414 4962 2.564471 AGCATTTGAGCTCAGGTGC 58.436 52.632 31.86 31.86 42.18 5.01
416 4964 0.170561 GCATTTGAGCTCAGGTGCAG 59.829 55.000 32.97 17.92 37.72 4.41
418 4966 2.366533 CATTTGAGCTCAGGTGCAGAT 58.633 47.619 17.43 1.44 34.99 2.90
419 4967 1.817357 TTTGAGCTCAGGTGCAGATG 58.183 50.000 17.43 0.00 34.99 2.90
420 4968 0.675837 TTGAGCTCAGGTGCAGATGC 60.676 55.000 17.43 0.00 42.50 3.91
421 4969 1.221293 GAGCTCAGGTGCAGATGCT 59.779 57.895 9.40 0.00 42.66 3.79
422 4970 0.810823 GAGCTCAGGTGCAGATGCTC 60.811 60.000 9.40 10.04 42.66 4.26
428 4976 3.479370 GTGCAGATGCTCCACGTC 58.521 61.111 6.35 0.00 42.66 4.34
429 4977 2.103042 GTGCAGATGCTCCACGTCC 61.103 63.158 6.35 0.00 42.66 4.79
430 4978 2.512515 GCAGATGCTCCACGTCCC 60.513 66.667 0.00 0.00 38.21 4.46
431 4979 3.023949 GCAGATGCTCCACGTCCCT 62.024 63.158 0.00 0.00 38.21 4.20
443 5263 1.134580 CACGTCCCTCATCTGCTCAAT 60.135 52.381 0.00 0.00 0.00 2.57
446 5266 2.363680 CGTCCCTCATCTGCTCAATACT 59.636 50.000 0.00 0.00 0.00 2.12
452 5272 5.053145 CCTCATCTGCTCAATACTTACACC 58.947 45.833 0.00 0.00 0.00 4.16
470 5291 0.386113 CCGCCCTCTTCTGTAGTAGC 59.614 60.000 0.00 0.00 0.00 3.58
478 5299 0.966875 TTCTGTAGTAGCGCGGGGAA 60.967 55.000 8.83 0.00 0.00 3.97
485 5306 0.596859 GTAGCGCGGGGAACTCATAC 60.597 60.000 8.83 0.00 0.00 2.39
487 5308 1.227556 GCGCGGGGAACTCATACAT 60.228 57.895 8.83 0.00 0.00 2.29
597 5445 7.834681 TCTTCTACTAGTGGTATGTTGTCTCAT 59.165 37.037 5.39 0.00 0.00 2.90
599 5447 7.116736 TCTACTAGTGGTATGTTGTCTCATGA 58.883 38.462 5.39 0.00 0.00 3.07
625 5473 4.659111 AAAAACCGGTCGGATTTTTCTT 57.341 36.364 19.70 3.67 44.27 2.52
629 5477 5.970317 AACCGGTCGGATTTTTCTTTTAT 57.030 34.783 16.90 0.00 38.96 1.40
699 5568 8.961294 ATGTTCATGAATTTGAAAAGTTTCCA 57.039 26.923 12.12 0.00 37.36 3.53
700 5569 8.961294 TGTTCATGAATTTGAAAAGTTTCCAT 57.039 26.923 12.12 0.00 37.36 3.41
701 5570 9.393512 TGTTCATGAATTTGAAAAGTTTCCATT 57.606 25.926 12.12 0.78 37.36 3.16
794 5671 8.274939 CGAATTCAAGTATGTTTGCAAATTTGT 58.725 29.630 16.21 4.65 0.00 2.83
823 5700 7.875316 TTCACGAATTTTGAAGAAAAACACA 57.125 28.000 0.00 0.00 40.51 3.72
824 5701 7.875316 TCACGAATTTTGAAGAAAAACACAA 57.125 28.000 0.00 0.00 40.51 3.33
825 5702 8.299262 TCACGAATTTTGAAGAAAAACACAAA 57.701 26.923 0.00 0.00 40.51 2.83
826 5703 8.930760 TCACGAATTTTGAAGAAAAACACAAAT 58.069 25.926 0.00 0.00 40.51 2.32
827 5704 8.987729 CACGAATTTTGAAGAAAAACACAAATG 58.012 29.630 0.00 0.00 40.51 2.32
828 5705 7.691877 ACGAATTTTGAAGAAAAACACAAATGC 59.308 29.630 0.00 0.00 40.51 3.56
891 6719 7.870826 TGAATTTTGATACATTATACAGCCCG 58.129 34.615 0.00 0.00 0.00 6.13
900 6753 1.717032 TATACAGCCCGCTCCAGAAT 58.283 50.000 0.00 0.00 0.00 2.40
1011 6898 1.890979 GGCTGCCATGGATGACGAG 60.891 63.158 18.40 1.50 0.00 4.18
1239 7172 0.895559 GAGTTTCCCAGCCCACCAAG 60.896 60.000 0.00 0.00 0.00 3.61
1241 7174 0.469144 GTTTCCCAGCCCACCAAGAA 60.469 55.000 0.00 0.00 0.00 2.52
1249 7182 1.754380 GCCCACCAAGAACCCCAAAC 61.754 60.000 0.00 0.00 0.00 2.93
1254 7187 1.906333 CAAGAACCCCAAACCCCGG 60.906 63.158 0.00 0.00 0.00 5.73
1255 7188 3.820825 AAGAACCCCAAACCCCGGC 62.821 63.158 0.00 0.00 0.00 6.13
1256 7189 4.607025 GAACCCCAAACCCCGGCA 62.607 66.667 0.00 0.00 0.00 5.69
1257 7190 4.614036 AACCCCAAACCCCGGCAG 62.614 66.667 0.00 0.00 0.00 4.85
1432 7401 1.377725 GTCGAGAGGTACCGGGTGA 60.378 63.158 10.66 0.86 0.00 4.02
1513 7482 1.005984 TTCGACGAAATGTGGGCGA 60.006 52.632 8.05 0.00 0.00 5.54
1533 7514 3.077556 AAGGTGCTCGCCGAGGAT 61.078 61.111 16.95 0.00 31.72 3.24
1537 7518 2.755876 TGCTCGCCGAGGATGAGT 60.756 61.111 16.95 0.00 32.32 3.41
1649 7640 8.846943 TTGATCAACATATGTAGTGTCTTTGT 57.153 30.769 9.21 0.00 0.00 2.83
1650 7641 8.255394 TGATCAACATATGTAGTGTCTTTGTG 57.745 34.615 9.21 0.00 0.00 3.33
1651 7642 7.877612 TGATCAACATATGTAGTGTCTTTGTGT 59.122 33.333 9.21 0.00 0.00 3.72
1652 7643 7.652300 TCAACATATGTAGTGTCTTTGTGTC 57.348 36.000 9.21 0.00 0.00 3.67
1723 7718 0.949105 GCCTCGCCTCGAAAAGACAA 60.949 55.000 0.00 0.00 34.74 3.18
1784 7779 2.577112 CTGCCGCTGTACTCGACG 60.577 66.667 9.16 0.00 0.00 5.12
1895 7890 1.094785 ATGTGGCAGCATTTACGGAC 58.905 50.000 0.00 0.00 0.00 4.79
2051 8046 6.149474 TGCAGCTTCCTTCAGTTAATTTCTAC 59.851 38.462 0.00 0.00 0.00 2.59
2084 8079 2.271800 CGCTACTTGGATGAGTTGTCC 58.728 52.381 0.00 0.00 36.26 4.02
2275 8277 7.402071 GGTATGGGAGGTGAGTATTCCATATAA 59.598 40.741 0.00 0.00 38.83 0.98
2765 11349 5.130145 AGAGCCACTAGTCTATCTTGCAATT 59.870 40.000 0.00 0.00 0.00 2.32
2913 14886 2.173782 TGTGGAGTTTCTGGCCTTGTTA 59.826 45.455 3.32 0.00 0.00 2.41
2915 14888 2.441750 TGGAGTTTCTGGCCTTGTTAGT 59.558 45.455 3.32 0.00 0.00 2.24
2916 14889 2.814336 GGAGTTTCTGGCCTTGTTAGTG 59.186 50.000 3.32 0.00 0.00 2.74
2919 14892 4.729868 AGTTTCTGGCCTTGTTAGTGATT 58.270 39.130 3.32 0.00 0.00 2.57
2920 14893 5.140454 AGTTTCTGGCCTTGTTAGTGATTT 58.860 37.500 3.32 0.00 0.00 2.17
2921 14894 5.598417 AGTTTCTGGCCTTGTTAGTGATTTT 59.402 36.000 3.32 0.00 0.00 1.82
2922 14895 5.452078 TTCTGGCCTTGTTAGTGATTTTG 57.548 39.130 3.32 0.00 0.00 2.44
2923 14896 3.255642 TCTGGCCTTGTTAGTGATTTTGC 59.744 43.478 3.32 0.00 0.00 3.68
2924 14897 2.298729 TGGCCTTGTTAGTGATTTTGCC 59.701 45.455 3.32 0.00 36.90 4.52
2925 14898 2.298729 GGCCTTGTTAGTGATTTTGCCA 59.701 45.455 0.00 0.00 36.40 4.92
2926 14899 3.244044 GGCCTTGTTAGTGATTTTGCCAA 60.244 43.478 0.00 0.00 36.40 4.52
2927 14900 3.740832 GCCTTGTTAGTGATTTTGCCAAC 59.259 43.478 0.00 0.00 0.00 3.77
2928 14901 4.739137 GCCTTGTTAGTGATTTTGCCAACA 60.739 41.667 0.00 0.00 0.00 3.33
2930 14903 5.990996 CCTTGTTAGTGATTTTGCCAACATT 59.009 36.000 0.00 0.00 0.00 2.71
2931 14904 6.073657 CCTTGTTAGTGATTTTGCCAACATTG 60.074 38.462 0.00 0.00 0.00 2.82
2945 14918 2.755103 CAACATTGGCTTTAGAGTCCCC 59.245 50.000 0.00 0.00 0.00 4.81
2948 14921 0.696501 TTGGCTTTAGAGTCCCCCAC 59.303 55.000 0.00 0.00 0.00 4.61
2950 14923 1.205460 GGCTTTAGAGTCCCCCACCA 61.205 60.000 0.00 0.00 0.00 4.17
2951 14924 0.035343 GCTTTAGAGTCCCCCACCAC 60.035 60.000 0.00 0.00 0.00 4.16
2952 14925 1.358152 CTTTAGAGTCCCCCACCACA 58.642 55.000 0.00 0.00 0.00 4.17
2953 14926 1.702957 CTTTAGAGTCCCCCACCACAA 59.297 52.381 0.00 0.00 0.00 3.33
2954 14927 1.822425 TTAGAGTCCCCCACCACAAA 58.178 50.000 0.00 0.00 0.00 2.83
2955 14928 1.822425 TAGAGTCCCCCACCACAAAA 58.178 50.000 0.00 0.00 0.00 2.44
2956 14929 0.478507 AGAGTCCCCCACCACAAAAG 59.521 55.000 0.00 0.00 0.00 2.27
2957 14930 0.539669 GAGTCCCCCACCACAAAAGG 60.540 60.000 0.00 0.00 0.00 3.11
2958 14931 2.200092 TCCCCCACCACAAAAGGC 59.800 61.111 0.00 0.00 0.00 4.35
2959 14932 3.302344 CCCCCACCACAAAAGGCG 61.302 66.667 0.00 0.00 0.00 5.52
2960 14933 3.302344 CCCCACCACAAAAGGCGG 61.302 66.667 0.00 0.00 0.00 6.13
2961 14934 2.203422 CCCACCACAAAAGGCGGA 60.203 61.111 0.00 0.00 32.38 5.54
2962 14935 1.606313 CCCACCACAAAAGGCGGAT 60.606 57.895 0.00 0.00 32.38 4.18
2963 14936 1.184970 CCCACCACAAAAGGCGGATT 61.185 55.000 0.00 0.00 32.38 3.01
2964 14937 0.038343 CCACCACAAAAGGCGGATTG 60.038 55.000 0.00 0.00 32.38 2.67
2966 14939 1.068434 CACCACAAAAGGCGGATTGTT 59.932 47.619 3.42 0.00 37.66 2.83
2968 14941 1.068434 CCACAAAAGGCGGATTGTTGT 59.932 47.619 3.42 0.00 37.66 3.32
2969 14942 2.482839 CCACAAAAGGCGGATTGTTGTT 60.483 45.455 3.42 0.00 37.66 2.83
2970 14943 2.539274 CACAAAAGGCGGATTGTTGTTG 59.461 45.455 3.42 0.00 37.66 3.33
2971 14944 1.526464 CAAAAGGCGGATTGTTGTTGC 59.474 47.619 0.00 0.00 0.00 4.17
2973 14946 3.046870 GGCGGATTGTTGTTGCCA 58.953 55.556 0.00 0.00 45.06 4.92
2975 14948 0.814457 GGCGGATTGTTGTTGCCATA 59.186 50.000 0.00 0.00 45.06 2.74
2976 14949 1.202290 GGCGGATTGTTGTTGCCATAG 60.202 52.381 0.00 0.00 45.06 2.23
2979 14952 3.500982 CGGATTGTTGTTGCCATAGTTG 58.499 45.455 0.00 0.00 0.00 3.16
2980 14953 3.190327 CGGATTGTTGTTGCCATAGTTGA 59.810 43.478 0.00 0.00 0.00 3.18
2982 14955 4.218417 GGATTGTTGTTGCCATAGTTGAGT 59.782 41.667 0.00 0.00 0.00 3.41
2983 14956 4.829064 TTGTTGTTGCCATAGTTGAGTC 57.171 40.909 0.00 0.00 0.00 3.36
2984 14957 3.146066 TGTTGTTGCCATAGTTGAGTCC 58.854 45.455 0.00 0.00 0.00 3.85
2985 14958 3.146066 GTTGTTGCCATAGTTGAGTCCA 58.854 45.455 0.00 0.00 0.00 4.02
2987 14960 4.835284 TGTTGCCATAGTTGAGTCCATA 57.165 40.909 0.00 0.00 0.00 2.74
2988 14961 4.769688 TGTTGCCATAGTTGAGTCCATAG 58.230 43.478 0.00 0.00 0.00 2.23
2989 14962 3.475566 TGCCATAGTTGAGTCCATAGC 57.524 47.619 0.00 0.00 0.00 2.97
2990 14963 2.771372 TGCCATAGTTGAGTCCATAGCA 59.229 45.455 0.00 0.00 0.00 3.49
2991 14964 3.392285 TGCCATAGTTGAGTCCATAGCAT 59.608 43.478 0.00 0.00 0.00 3.79
2993 14966 5.071653 TGCCATAGTTGAGTCCATAGCATAA 59.928 40.000 0.00 0.00 0.00 1.90
2994 14967 5.409826 GCCATAGTTGAGTCCATAGCATAAC 59.590 44.000 0.00 0.00 0.00 1.89
2995 14968 5.934625 CCATAGTTGAGTCCATAGCATAACC 59.065 44.000 0.00 0.00 0.00 2.85
2996 14969 4.423625 AGTTGAGTCCATAGCATAACCC 57.576 45.455 0.00 0.00 0.00 4.11
2997 14970 4.040755 AGTTGAGTCCATAGCATAACCCT 58.959 43.478 0.00 0.00 0.00 4.34
2998 14971 4.475016 AGTTGAGTCCATAGCATAACCCTT 59.525 41.667 0.00 0.00 0.00 3.95
2999 14972 5.044846 AGTTGAGTCCATAGCATAACCCTTT 60.045 40.000 0.00 0.00 0.00 3.11
3000 14973 4.780815 TGAGTCCATAGCATAACCCTTTG 58.219 43.478 0.00 0.00 0.00 2.77
3002 14975 5.132648 TGAGTCCATAGCATAACCCTTTGAT 59.867 40.000 0.00 0.00 0.00 2.57
3003 14976 5.625150 AGTCCATAGCATAACCCTTTGATC 58.375 41.667 0.00 0.00 0.00 2.92
3004 14977 5.370880 AGTCCATAGCATAACCCTTTGATCT 59.629 40.000 0.00 0.00 0.00 2.75
3006 14979 6.016777 GTCCATAGCATAACCCTTTGATCTTG 60.017 42.308 0.00 0.00 0.00 3.02
3007 14980 5.829924 CCATAGCATAACCCTTTGATCTTGT 59.170 40.000 0.00 0.00 0.00 3.16
3011 14984 5.652452 AGCATAACCCTTTGATCTTGTAACC 59.348 40.000 0.00 0.00 0.00 2.85
3012 14985 5.417580 GCATAACCCTTTGATCTTGTAACCA 59.582 40.000 0.00 0.00 0.00 3.67
3013 14986 6.625081 GCATAACCCTTTGATCTTGTAACCAC 60.625 42.308 0.00 0.00 0.00 4.16
3014 14987 3.763057 ACCCTTTGATCTTGTAACCACC 58.237 45.455 0.00 0.00 0.00 4.61
3015 14988 3.397955 ACCCTTTGATCTTGTAACCACCT 59.602 43.478 0.00 0.00 0.00 4.00
3016 14989 4.010349 CCCTTTGATCTTGTAACCACCTC 58.990 47.826 0.00 0.00 0.00 3.85
3017 14990 4.263506 CCCTTTGATCTTGTAACCACCTCT 60.264 45.833 0.00 0.00 0.00 3.69
3229 15202 9.871238 CCTTTGTACATATGTAAACACTACTCT 57.129 33.333 17.07 0.00 31.52 3.24
3259 15232 6.935240 TTAATATACATGCAGTAGGAGCCT 57.065 37.500 0.00 0.00 35.85 4.58
3262 15235 2.409948 ACATGCAGTAGGAGCCTTTC 57.590 50.000 0.00 0.00 0.00 2.62
3277 15250 5.834204 GGAGCCTTTCCTACTGTCTAATCTA 59.166 44.000 0.00 0.00 43.16 1.98
3278 15251 6.495526 GGAGCCTTTCCTACTGTCTAATCTAT 59.504 42.308 0.00 0.00 43.16 1.98
3279 15252 7.309560 GGAGCCTTTCCTACTGTCTAATCTATC 60.310 44.444 0.00 0.00 43.16 2.08
3347 15437 5.010719 TCTGCTAGTACCTTTGGATTATCCG 59.989 44.000 6.77 0.00 40.17 4.18
3392 15482 7.482169 TCTTACACAAACATAGAGGTCTGAT 57.518 36.000 0.00 0.00 0.00 2.90
3427 15538 6.959366 AGAAGGGATCCCATGTTTCAAAAATA 59.041 34.615 32.69 0.00 38.92 1.40
3428 15539 7.457535 AGAAGGGATCCCATGTTTCAAAAATAA 59.542 33.333 32.69 0.00 38.92 1.40
3448 15573 0.954449 CCAAGACAGAGCTGCACCTG 60.954 60.000 16.82 16.82 36.53 4.00
3518 15643 1.830279 CATCACTCTGTTGGCATGGT 58.170 50.000 0.00 0.00 0.00 3.55
3520 15645 2.768253 TCACTCTGTTGGCATGGTAG 57.232 50.000 0.00 0.00 0.00 3.18
3563 15688 1.939934 TGTGTTCGAGTTTTGGCTCTG 59.060 47.619 0.00 0.00 33.55 3.35
3602 15727 7.837359 AGGATGCCCCTTCTATTAATTCTAT 57.163 36.000 0.00 0.00 44.85 1.98
3603 15728 8.237109 AGGATGCCCCTTCTATTAATTCTATT 57.763 34.615 0.00 0.00 44.85 1.73
3604 15729 9.351572 AGGATGCCCCTTCTATTAATTCTATTA 57.648 33.333 0.00 0.00 44.85 0.98
3698 15827 7.698130 GCTTAGAAGTACAATAATGGCAAAGTG 59.302 37.037 0.00 0.00 0.00 3.16
3730 15859 9.374838 GATAAGAAAAATGTGCATTCCATTCTT 57.625 29.630 22.13 22.13 39.15 2.52
3788 16010 5.550290 TGCTCAGATTTGTGTCTGTGAATA 58.450 37.500 9.40 0.00 44.66 1.75
3801 16023 5.719563 TGTCTGTGAATACATTCTAGGGTGA 59.280 40.000 3.76 0.00 37.67 4.02
3947 16169 4.818534 TGCATGTTCAGTTGAAGAAGAC 57.181 40.909 0.00 0.00 34.27 3.01
4118 16343 3.533606 TTTGGTGGTGATTGTTGTTGG 57.466 42.857 0.00 0.00 0.00 3.77
4125 16350 5.115480 GTGGTGATTGTTGTTGGTTTGATT 58.885 37.500 0.00 0.00 0.00 2.57
4127 16352 5.583854 TGGTGATTGTTGTTGGTTTGATTTG 59.416 36.000 0.00 0.00 0.00 2.32
4172 16413 2.297033 AGAATTCAAAAGCGCACACCAT 59.703 40.909 11.47 0.00 0.00 3.55
4235 16476 1.000060 TGCAAGGTGCTTTTCTGCATC 60.000 47.619 1.43 0.00 45.31 3.91
4236 16477 1.000060 GCAAGGTGCTTTTCTGCATCA 60.000 47.619 2.59 0.00 45.75 3.07
4237 16478 2.353406 GCAAGGTGCTTTTCTGCATCAT 60.353 45.455 2.59 0.00 45.75 2.45
4238 16479 3.508762 CAAGGTGCTTTTCTGCATCATC 58.491 45.455 2.59 0.00 45.75 2.92
4239 16480 2.799017 AGGTGCTTTTCTGCATCATCA 58.201 42.857 2.59 0.00 45.75 3.07
4240 16481 3.362706 AGGTGCTTTTCTGCATCATCAT 58.637 40.909 2.59 0.00 45.75 2.45
4254 16495 5.186198 GCATCATCATCATCATCATCAGGA 58.814 41.667 0.00 0.00 0.00 3.86
4282 16523 8.641498 ACAAAGTATCAAGTCAGAAATGGAAT 57.359 30.769 0.00 0.00 0.00 3.01
4304 16545 8.584157 GGAATACCATGGATTTTGTTATATGCA 58.416 33.333 21.47 0.00 35.97 3.96
4345 16586 7.296628 AGATCAGATGGTTACCTTCACTATC 57.703 40.000 17.71 15.25 33.44 2.08
4382 16623 2.620115 CTGGTCATCTTGTTTGTGCTGT 59.380 45.455 0.00 0.00 0.00 4.40
4510 16758 5.305644 TGGATAGAGGAAAGAATAGGCAGAC 59.694 44.000 0.00 0.00 0.00 3.51
4786 17164 1.069204 ACGATTCCCATGGAGATGTCG 59.931 52.381 15.22 20.32 33.69 4.35
4807 19826 4.510038 GGTAGACCGTAGTTCACTTTGA 57.490 45.455 0.00 0.00 0.00 2.69
4844 19907 8.083828 ACCAAGAAGTTATAGTCATCATCTGT 57.916 34.615 0.00 0.00 0.00 3.41
5070 20148 7.073854 ACTGGATTTAGCTAGGGATACTAACA 58.926 38.462 0.00 0.00 0.00 2.41
5167 23904 7.877097 CCATGGTTAATTGGTCAAATTCAAAGA 59.123 33.333 2.57 0.00 39.29 2.52
5196 23935 3.191162 TCAACTTGCGGATCAATTTGGAG 59.809 43.478 0.00 0.00 42.30 3.86
5228 23967 6.070995 CCAAGGCCATTCTTTGCATGATATAT 60.071 38.462 5.01 0.00 0.00 0.86
5232 23971 6.327934 GCCATTCTTTGCATGATATATCCAC 58.672 40.000 10.25 0.62 0.00 4.02
5276 24075 1.136891 GCTAAAATGTGGCCCCATCAC 59.863 52.381 0.00 0.00 35.82 3.06
5282 24081 0.409092 TGTGGCCCCATCACTGAATT 59.591 50.000 0.00 0.00 36.21 2.17
5284 24083 0.703488 TGGCCCCATCACTGAATTCA 59.297 50.000 8.12 8.12 0.00 2.57
5285 24084 1.106285 GGCCCCATCACTGAATTCAC 58.894 55.000 3.38 0.00 0.00 3.18
5291 24090 2.756760 CCATCACTGAATTCACAAGGGG 59.243 50.000 3.38 0.00 0.00 4.79
5296 24095 4.959210 TCACTGAATTCACAAGGGGAAAAA 59.041 37.500 3.38 0.00 0.00 1.94
5343 24147 1.384222 CCGGCAATTAGGGTGAAGGC 61.384 60.000 0.00 0.00 0.00 4.35
5344 24148 1.384222 CGGCAATTAGGGTGAAGGCC 61.384 60.000 0.00 0.00 36.62 5.19
5348 24152 1.566231 CAATTAGGGTGAAGGCCTCCT 59.434 52.381 14.78 14.78 33.87 3.69
5374 24178 6.668133 TCCTTTTTAGGGGGAATGTATCTT 57.332 37.500 0.00 0.00 0.00 2.40
5375 24179 7.051696 TCCTTTTTAGGGGGAATGTATCTTT 57.948 36.000 0.00 0.00 0.00 2.52
5376 24180 7.483881 TCCTTTTTAGGGGGAATGTATCTTTT 58.516 34.615 0.00 0.00 0.00 2.27
5377 24181 7.959152 TCCTTTTTAGGGGGAATGTATCTTTTT 59.041 33.333 0.00 0.00 0.00 1.94
5378 24182 9.262240 CCTTTTTAGGGGGAATGTATCTTTTTA 57.738 33.333 0.00 0.00 0.00 1.52
5380 24184 8.832458 TTTTAGGGGGAATGTATCTTTTTAGG 57.168 34.615 0.00 0.00 0.00 2.69
5381 24185 5.403558 AGGGGGAATGTATCTTTTTAGGG 57.596 43.478 0.00 0.00 0.00 3.53
5382 24186 4.170053 AGGGGGAATGTATCTTTTTAGGGG 59.830 45.833 0.00 0.00 0.00 4.79
5383 24187 4.169264 GGGGGAATGTATCTTTTTAGGGGA 59.831 45.833 0.00 0.00 0.00 4.81
5384 24188 5.341369 GGGGGAATGTATCTTTTTAGGGGAA 60.341 44.000 0.00 0.00 0.00 3.97
5385 24189 6.382087 GGGGAATGTATCTTTTTAGGGGAAT 58.618 40.000 0.00 0.00 0.00 3.01
5386 24190 6.267699 GGGGAATGTATCTTTTTAGGGGAATG 59.732 42.308 0.00 0.00 0.00 2.67
5387 24191 6.839134 GGGAATGTATCTTTTTAGGGGAATGT 59.161 38.462 0.00 0.00 0.00 2.71
5388 24192 8.002459 GGGAATGTATCTTTTTAGGGGAATGTA 58.998 37.037 0.00 0.00 0.00 2.29
5389 24193 9.588096 GGAATGTATCTTTTTAGGGGAATGTAT 57.412 33.333 0.00 0.00 0.00 2.29
5399 24203 1.212935 GGGGAATGTATCTGGTGCACT 59.787 52.381 17.98 0.00 0.00 4.40
5404 24208 1.055849 TGTATCTGGTGCACTGGTGT 58.944 50.000 17.98 2.32 0.00 4.16
5409 24213 1.210722 TCTGGTGCACTGGTGTTTGTA 59.789 47.619 17.98 0.00 0.00 2.41
5413 24217 2.014128 GTGCACTGGTGTTTGTAGTGT 58.986 47.619 10.32 0.00 42.79 3.55
5417 24221 3.002965 GCACTGGTGTTTGTAGTGTTACC 59.997 47.826 0.00 0.00 42.79 2.85
5418 24222 4.193090 CACTGGTGTTTGTAGTGTTACCA 58.807 43.478 0.00 0.00 37.59 3.25
5421 24225 4.193090 TGGTGTTTGTAGTGTTACCAGTG 58.807 43.478 0.00 0.00 33.60 3.66
5422 24226 4.193865 GGTGTTTGTAGTGTTACCAGTGT 58.806 43.478 0.00 0.00 0.00 3.55
5423 24227 4.637091 GGTGTTTGTAGTGTTACCAGTGTT 59.363 41.667 0.00 0.00 0.00 3.32
5424 24228 5.448089 GGTGTTTGTAGTGTTACCAGTGTTG 60.448 44.000 0.00 0.00 0.00 3.33
5439 24243 0.108377 TGTTGGACGCTGTATCGCAT 60.108 50.000 0.00 0.00 0.00 4.73
5442 24246 0.108377 TGGACGCTGTATCGCATTGT 60.108 50.000 0.00 0.00 0.00 2.71
5480 24284 9.899226 AAATAAATCTGAAAAAGTCTAGCACAC 57.101 29.630 0.00 0.00 0.00 3.82
5482 24286 9.944376 ATAAATCTGAAAAAGTCTAGCACACTA 57.056 29.630 0.00 0.00 0.00 2.74
5511 24315 8.516234 ACAAACACTAATGTAAGTTGTCACAAA 58.484 29.630 0.00 0.00 38.45 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.793071 AGAGAGCAGATCAAATATCGTCG 58.207 43.478 0.00 0.00 0.00 5.12
2 3 5.107530 GCAAGAGAGCAGATCAAATATCGTC 60.108 44.000 0.00 0.00 0.00 4.20
3 4 4.749099 GCAAGAGAGCAGATCAAATATCGT 59.251 41.667 0.00 0.00 0.00 3.73
4 5 4.748600 TGCAAGAGAGCAGATCAAATATCG 59.251 41.667 0.00 0.00 40.11 2.92
17 4306 1.134580 TGCCAGATAGTGCAAGAGAGC 60.135 52.381 0.00 0.00 33.87 4.09
28 4317 3.265791 GACCACTTTGTCTGCCAGATAG 58.734 50.000 0.00 0.00 32.39 2.08
34 4323 3.568007 TGTTATTGACCACTTTGTCTGCC 59.432 43.478 0.00 0.00 36.21 4.85
207 4511 1.338389 GCATGGCAGCCAGTGATTTTT 60.338 47.619 21.51 0.00 36.75 1.94
208 4512 0.248289 GCATGGCAGCCAGTGATTTT 59.752 50.000 21.51 0.00 36.75 1.82
209 4513 1.895238 GCATGGCAGCCAGTGATTT 59.105 52.632 21.51 0.00 36.75 2.17
210 4514 2.412323 CGCATGGCAGCCAGTGATT 61.412 57.895 21.51 0.00 36.75 2.57
211 4515 2.825075 TTCGCATGGCAGCCAGTGAT 62.825 55.000 21.51 0.00 36.75 3.06
213 4517 3.047718 CTTCGCATGGCAGCCAGTG 62.048 63.158 21.51 18.05 36.75 3.66
214 4518 2.547640 ATCTTCGCATGGCAGCCAGT 62.548 55.000 21.51 5.38 36.75 4.00
215 4519 1.822613 ATCTTCGCATGGCAGCCAG 60.823 57.895 21.51 12.99 36.75 4.85
231 4537 2.560542 AGACTCGATACTGCCCATCATC 59.439 50.000 0.00 0.00 0.00 2.92
258 4564 6.514212 CGGATATTTATGGAAATCGTGGCAAA 60.514 38.462 0.00 0.00 36.62 3.68
261 4567 4.454504 ACGGATATTTATGGAAATCGTGGC 59.545 41.667 0.00 0.00 33.94 5.01
263 4569 6.073980 ACGAACGGATATTTATGGAAATCGTG 60.074 38.462 0.00 0.00 34.85 4.35
264 4570 5.987347 ACGAACGGATATTTATGGAAATCGT 59.013 36.000 0.00 0.00 35.63 3.73
265 4571 6.144886 TCACGAACGGATATTTATGGAAATCG 59.855 38.462 0.00 0.00 36.62 3.34
266 4572 7.416154 TCACGAACGGATATTTATGGAAATC 57.584 36.000 0.00 0.00 36.62 2.17
267 4573 7.979444 ATCACGAACGGATATTTATGGAAAT 57.021 32.000 0.00 0.00 38.79 2.17
270 4576 9.496873 AATTTATCACGAACGGATATTTATGGA 57.503 29.630 0.00 0.00 0.00 3.41
287 4593 3.742786 TGCGCTCGTGAAAATTTATCAC 58.257 40.909 9.73 16.84 42.94 3.06
289 4595 5.498159 TGTATGCGCTCGTGAAAATTTATC 58.502 37.500 9.73 0.00 0.00 1.75
292 4598 3.822594 TGTATGCGCTCGTGAAAATTT 57.177 38.095 9.73 0.00 0.00 1.82
293 4599 3.058570 TGTTGTATGCGCTCGTGAAAATT 60.059 39.130 9.73 0.00 0.00 1.82
295 4601 1.867865 TGTTGTATGCGCTCGTGAAAA 59.132 42.857 9.73 0.00 0.00 2.29
296 4602 1.503294 TGTTGTATGCGCTCGTGAAA 58.497 45.000 9.73 0.00 0.00 2.69
297 4603 1.720805 ATGTTGTATGCGCTCGTGAA 58.279 45.000 9.73 0.00 0.00 3.18
298 4604 1.720805 AATGTTGTATGCGCTCGTGA 58.279 45.000 9.73 0.00 0.00 4.35
299 4605 2.168384 CAAATGTTGTATGCGCTCGTG 58.832 47.619 9.73 0.00 0.00 4.35
300 4606 1.804151 ACAAATGTTGTATGCGCTCGT 59.196 42.857 9.73 0.00 43.27 4.18
302 4608 3.469899 TGACAAATGTTGTATGCGCTC 57.530 42.857 9.73 0.00 45.52 5.03
303 4609 3.913548 TTGACAAATGTTGTATGCGCT 57.086 38.095 9.73 0.00 45.52 5.92
304 4610 3.364621 CCTTTGACAAATGTTGTATGCGC 59.635 43.478 0.00 0.00 45.52 6.09
305 4611 4.545610 ACCTTTGACAAATGTTGTATGCG 58.454 39.130 0.05 0.00 45.52 4.73
306 4612 7.145323 AGTAACCTTTGACAAATGTTGTATGC 58.855 34.615 23.71 12.69 45.52 3.14
312 4618 9.930693 TTTTTGTAGTAACCTTTGACAAATGTT 57.069 25.926 20.59 20.59 39.15 2.71
320 4626 9.058174 TCGAATCATTTTTGTAGTAACCTTTGA 57.942 29.630 0.00 0.00 0.00 2.69
321 4627 9.840427 ATCGAATCATTTTTGTAGTAACCTTTG 57.160 29.630 0.00 0.00 0.00 2.77
375 4923 4.456566 GCTCCCGGTAAACAGTAAAATCAA 59.543 41.667 0.00 0.00 0.00 2.57
376 4924 4.004982 GCTCCCGGTAAACAGTAAAATCA 58.995 43.478 0.00 0.00 0.00 2.57
382 4930 3.008157 TCAAATGCTCCCGGTAAACAGTA 59.992 43.478 0.00 0.00 0.00 2.74
384 4932 2.420022 CTCAAATGCTCCCGGTAAACAG 59.580 50.000 0.00 0.00 0.00 3.16
389 4937 2.296920 AGCTCAAATGCTCCCGGTA 58.703 52.632 0.00 0.00 39.34 4.02
390 4938 3.081554 AGCTCAAATGCTCCCGGT 58.918 55.556 0.00 0.00 39.34 5.28
397 4945 0.170561 CTGCACCTGAGCTCAAATGC 59.829 55.000 31.22 31.22 37.33 3.56
398 4946 1.817357 TCTGCACCTGAGCTCAAATG 58.183 50.000 18.85 18.60 34.99 2.32
399 4947 2.366533 CATCTGCACCTGAGCTCAAAT 58.633 47.619 18.85 5.66 34.99 2.32
400 4948 1.817357 CATCTGCACCTGAGCTCAAA 58.183 50.000 18.85 0.00 34.99 2.69
401 4949 0.675837 GCATCTGCACCTGAGCTCAA 60.676 55.000 18.85 0.48 41.59 3.02
402 4950 1.078637 GCATCTGCACCTGAGCTCA 60.079 57.895 17.19 17.19 41.59 4.26
403 4951 0.810823 GAGCATCTGCACCTGAGCTC 60.811 60.000 6.82 6.82 45.16 4.09
404 4952 1.221293 GAGCATCTGCACCTGAGCT 59.779 57.895 4.79 0.00 45.16 4.09
405 4953 1.818785 GGAGCATCTGCACCTGAGC 60.819 63.158 10.88 0.00 46.30 4.26
406 4954 4.536316 GGAGCATCTGCACCTGAG 57.464 61.111 10.88 0.00 46.30 3.35
411 4959 2.103042 GGACGTGGAGCATCTGCAC 61.103 63.158 8.18 8.18 46.73 4.57
412 4960 2.265739 GGACGTGGAGCATCTGCA 59.734 61.111 4.79 0.00 45.16 4.41
413 4961 2.512515 GGGACGTGGAGCATCTGC 60.513 66.667 0.00 0.00 42.49 4.26
414 4962 1.142748 GAGGGACGTGGAGCATCTG 59.857 63.158 0.00 0.00 33.73 2.90
416 4964 0.249657 GATGAGGGACGTGGAGCATC 60.250 60.000 0.00 0.00 0.00 3.91
418 4966 1.305297 AGATGAGGGACGTGGAGCA 60.305 57.895 0.00 0.00 0.00 4.26
419 4967 1.142748 CAGATGAGGGACGTGGAGC 59.857 63.158 0.00 0.00 0.00 4.70
420 4968 1.142748 GCAGATGAGGGACGTGGAG 59.857 63.158 0.00 0.00 0.00 3.86
421 4969 1.305297 AGCAGATGAGGGACGTGGA 60.305 57.895 0.00 0.00 0.00 4.02
422 4970 1.142748 GAGCAGATGAGGGACGTGG 59.857 63.158 0.00 0.00 0.00 4.94
423 4971 0.247460 TTGAGCAGATGAGGGACGTG 59.753 55.000 0.00 0.00 0.00 4.49
424 4972 1.198713 ATTGAGCAGATGAGGGACGT 58.801 50.000 0.00 0.00 0.00 4.34
426 4974 4.414337 AAGTATTGAGCAGATGAGGGAC 57.586 45.455 0.00 0.00 0.00 4.46
427 4975 4.962362 TGTAAGTATTGAGCAGATGAGGGA 59.038 41.667 0.00 0.00 0.00 4.20
428 4976 5.053145 GTGTAAGTATTGAGCAGATGAGGG 58.947 45.833 0.00 0.00 0.00 4.30
429 4977 5.053145 GGTGTAAGTATTGAGCAGATGAGG 58.947 45.833 0.00 0.00 0.00 3.86
430 4978 4.742167 CGGTGTAAGTATTGAGCAGATGAG 59.258 45.833 0.00 0.00 0.00 2.90
431 4979 4.682787 CGGTGTAAGTATTGAGCAGATGA 58.317 43.478 0.00 0.00 0.00 2.92
443 5263 1.822990 CAGAAGAGGGCGGTGTAAGTA 59.177 52.381 0.00 0.00 0.00 2.24
446 5266 1.822990 CTACAGAAGAGGGCGGTGTAA 59.177 52.381 0.00 0.00 0.00 2.41
452 5272 0.029567 CGCTACTACAGAAGAGGGCG 59.970 60.000 0.00 0.00 35.87 6.13
470 5291 0.179084 ACATGTATGAGTTCCCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
478 5299 5.740224 GCACTATACCAGCACATGTATGAGT 60.740 44.000 10.94 9.48 0.00 3.41
530 5373 1.154205 CGAACAGGCGAGCCTATTGG 61.154 60.000 17.13 9.59 46.28 3.16
533 5376 2.107141 GCGAACAGGCGAGCCTAT 59.893 61.111 17.13 1.75 46.28 2.57
577 5425 6.605471 TTCATGAGACAACATACCACTAGT 57.395 37.500 0.00 0.00 0.00 2.57
606 5454 4.659111 AAAAGAAAAATCCGACCGGTTT 57.341 36.364 9.42 0.00 36.47 3.27
607 5455 5.970317 ATAAAAGAAAAATCCGACCGGTT 57.030 34.783 9.42 0.00 36.47 4.44
608 5456 5.970317 AATAAAAGAAAAATCCGACCGGT 57.030 34.783 6.92 6.92 36.47 5.28
654 5502 9.814899 TGAACATTTGTTAAAACTCATGAACAT 57.185 25.926 0.00 0.00 38.56 2.71
655 5503 9.814899 ATGAACATTTGTTAAAACTCATGAACA 57.185 25.926 0.00 0.00 38.56 3.18
674 5543 8.961294 TGGAAACTTTTCAAATTCATGAACAT 57.039 26.923 11.07 0.00 38.95 2.71
697 5566 9.480053 AACTCACAAACATTCTCAAATTAATGG 57.520 29.630 4.21 0.00 37.40 3.16
702 5571 9.434420 TTTTGAACTCACAAACATTCTCAAATT 57.566 25.926 0.00 0.00 39.08 1.82
703 5572 9.434420 TTTTTGAACTCACAAACATTCTCAAAT 57.566 25.926 0.00 0.00 39.08 2.32
704 5573 8.824159 TTTTTGAACTCACAAACATTCTCAAA 57.176 26.923 0.00 0.00 39.08 2.69
808 5685 7.664082 TTCAGCATTTGTGTTTTTCTTCAAA 57.336 28.000 0.00 0.00 34.95 2.69
809 5686 7.664082 TTTCAGCATTTGTGTTTTTCTTCAA 57.336 28.000 0.00 0.00 0.00 2.69
810 5687 7.664082 TTTTCAGCATTTGTGTTTTTCTTCA 57.336 28.000 0.00 0.00 0.00 3.02
864 6692 9.630098 GGGCTGTATAATGTATCAAAATTCATG 57.370 33.333 0.00 0.00 0.00 3.07
891 6719 4.006319 GACATGGGCTTATATTCTGGAGC 58.994 47.826 0.00 0.00 0.00 4.70
900 6753 4.303794 AGTAGGGTTGACATGGGCTTATA 58.696 43.478 0.00 0.00 0.00 0.98
997 6884 2.592861 GCCCTCGTCATCCATGGC 60.593 66.667 6.96 0.00 0.00 4.40
1183 7079 3.053896 CGGGGTTTGGAAGTCGGC 61.054 66.667 0.00 0.00 0.00 5.54
1184 7080 2.359478 CCGGGGTTTGGAAGTCGG 60.359 66.667 0.00 0.00 0.00 4.79
1185 7081 2.359478 CCCGGGGTTTGGAAGTCG 60.359 66.667 14.71 0.00 0.00 4.18
1188 7084 2.203567 TTGCCCGGGGTTTGGAAG 60.204 61.111 25.28 0.00 0.00 3.46
1239 7172 4.607025 TGCCGGGGTTTGGGGTTC 62.607 66.667 2.18 0.00 0.00 3.62
1272 7232 3.291101 TTCGAAGGGACGGGAAGCG 62.291 63.158 0.00 0.00 0.00 4.68
1276 7236 0.822164 GATTCTTCGAAGGGACGGGA 59.178 55.000 24.37 0.89 0.00 5.14
1280 7240 1.739371 CGTGGGATTCTTCGAAGGGAC 60.739 57.143 24.37 14.71 0.00 4.46
1513 7482 3.764466 CTCGGCGAGCACCTTCCT 61.764 66.667 25.31 0.00 0.00 3.36
1533 7514 2.563427 CGTCTCTGCGCAGACTCA 59.437 61.111 35.30 19.26 40.75 3.41
1537 7518 2.568612 CTTCCGTCTCTGCGCAGA 59.431 61.111 35.97 35.97 35.85 4.26
1649 7640 2.848679 TGCTGGCCTGGACAGACA 60.849 61.111 33.50 25.13 42.14 3.41
1650 7641 2.046507 CTGCTGGCCTGGACAGAC 60.047 66.667 33.50 22.91 42.14 3.51
1651 7642 3.324930 CCTGCTGGCCTGGACAGA 61.325 66.667 33.50 16.54 42.14 3.41
1652 7643 2.898933 TTCCTGCTGGCCTGGACAG 61.899 63.158 25.65 25.65 42.51 3.51
1723 7718 0.173708 GATGAACTCGACCCTTCGCT 59.826 55.000 0.00 0.00 45.46 4.93
1784 7779 1.604278 GCCAGGAAACAGACAGACAAC 59.396 52.381 0.00 0.00 0.00 3.32
1895 7890 0.250295 TCCCAAGAAGCTTGTCCACG 60.250 55.000 2.10 0.00 0.00 4.94
2084 8079 1.486726 AGGGTTCTTTCTATCGGCAGG 59.513 52.381 0.00 0.00 0.00 4.85
2223 8225 7.503566 CCCTTGACCATTGATGTTATACTGAAT 59.496 37.037 0.00 0.00 0.00 2.57
2340 8344 0.891373 GCTGCCTCGCATATCTCCTA 59.109 55.000 0.00 0.00 38.13 2.94
2348 8353 0.454600 CATTTCTTGCTGCCTCGCAT 59.545 50.000 0.00 0.00 40.04 4.73
2424 8429 0.108585 GTGCCAAACTCCTCACTGGA 59.891 55.000 0.00 0.00 43.86 3.86
2765 11349 5.941647 GCTACCCCAGTAACTGAAAATTACA 59.058 40.000 0.00 0.00 35.39 2.41
2881 14854 4.929211 CAGAAACTCCACACATACATCGAA 59.071 41.667 0.00 0.00 0.00 3.71
2924 14897 2.755103 GGGGACTCTAAAGCCAATGTTG 59.245 50.000 0.00 0.00 0.00 3.33
2925 14898 2.291605 GGGGGACTCTAAAGCCAATGTT 60.292 50.000 0.00 0.00 0.00 2.71
2926 14899 1.285078 GGGGGACTCTAAAGCCAATGT 59.715 52.381 0.00 0.00 0.00 2.71
2927 14900 1.284785 TGGGGGACTCTAAAGCCAATG 59.715 52.381 0.00 0.00 0.00 2.82
2928 14901 1.285078 GTGGGGGACTCTAAAGCCAAT 59.715 52.381 0.00 0.00 0.00 3.16
2930 14903 1.205460 GGTGGGGGACTCTAAAGCCA 61.205 60.000 0.00 0.00 0.00 4.75
2931 14904 1.205460 TGGTGGGGGACTCTAAAGCC 61.205 60.000 0.00 0.00 0.00 4.35
2932 14905 0.035343 GTGGTGGGGGACTCTAAAGC 60.035 60.000 0.00 0.00 0.00 3.51
2933 14906 1.358152 TGTGGTGGGGGACTCTAAAG 58.642 55.000 0.00 0.00 0.00 1.85
2937 14910 0.478507 CTTTTGTGGTGGGGGACTCT 59.521 55.000 0.00 0.00 0.00 3.24
2938 14911 0.539669 CCTTTTGTGGTGGGGGACTC 60.540 60.000 0.00 0.00 0.00 3.36
2941 14914 2.200092 GCCTTTTGTGGTGGGGGA 59.800 61.111 0.00 0.00 0.00 4.81
2942 14915 3.302344 CGCCTTTTGTGGTGGGGG 61.302 66.667 0.00 0.00 34.20 5.40
2948 14921 1.068434 ACAACAATCCGCCTTTTGTGG 59.932 47.619 0.00 0.00 46.66 4.17
2950 14923 2.820330 CAACAACAATCCGCCTTTTGT 58.180 42.857 0.00 0.00 37.66 2.83
2951 14924 1.526464 GCAACAACAATCCGCCTTTTG 59.474 47.619 0.00 0.00 0.00 2.44
2952 14925 1.540146 GGCAACAACAATCCGCCTTTT 60.540 47.619 0.00 0.00 39.73 2.27
2953 14926 0.033366 GGCAACAACAATCCGCCTTT 59.967 50.000 0.00 0.00 39.73 3.11
2954 14927 1.665442 GGCAACAACAATCCGCCTT 59.335 52.632 0.00 0.00 39.73 4.35
2955 14928 3.365535 GGCAACAACAATCCGCCT 58.634 55.556 0.00 0.00 39.73 5.52
2968 14941 3.199727 TGCTATGGACTCAACTATGGCAA 59.800 43.478 0.00 0.00 40.66 4.52
2969 14942 2.771372 TGCTATGGACTCAACTATGGCA 59.229 45.455 0.00 0.00 41.12 4.92
2970 14943 3.475566 TGCTATGGACTCAACTATGGC 57.524 47.619 0.00 0.00 36.24 4.40
2971 14944 5.934625 GGTTATGCTATGGACTCAACTATGG 59.065 44.000 0.00 0.00 0.00 2.74
2973 14946 5.846714 AGGGTTATGCTATGGACTCAACTAT 59.153 40.000 0.00 0.00 0.00 2.12
2975 14948 4.040755 AGGGTTATGCTATGGACTCAACT 58.959 43.478 0.00 0.00 0.00 3.16
2976 14949 4.423625 AGGGTTATGCTATGGACTCAAC 57.576 45.455 0.00 0.00 0.00 3.18
2979 14952 5.036117 TCAAAGGGTTATGCTATGGACTC 57.964 43.478 0.00 0.00 0.00 3.36
2980 14953 5.370880 AGATCAAAGGGTTATGCTATGGACT 59.629 40.000 0.00 0.00 0.00 3.85
2982 14955 5.912149 AGATCAAAGGGTTATGCTATGGA 57.088 39.130 0.00 0.00 0.00 3.41
2983 14956 5.829924 ACAAGATCAAAGGGTTATGCTATGG 59.170 40.000 0.00 0.00 0.00 2.74
2984 14957 6.949352 ACAAGATCAAAGGGTTATGCTATG 57.051 37.500 0.00 0.00 0.00 2.23
2985 14958 7.502561 GGTTACAAGATCAAAGGGTTATGCTAT 59.497 37.037 0.00 0.00 0.00 2.97
2987 14960 5.652452 GGTTACAAGATCAAAGGGTTATGCT 59.348 40.000 0.00 0.00 0.00 3.79
2988 14961 5.417580 TGGTTACAAGATCAAAGGGTTATGC 59.582 40.000 0.00 0.00 0.00 3.14
2989 14962 6.127730 GGTGGTTACAAGATCAAAGGGTTATG 60.128 42.308 0.00 0.00 0.00 1.90
2990 14963 5.949952 GGTGGTTACAAGATCAAAGGGTTAT 59.050 40.000 0.00 0.00 0.00 1.89
2991 14964 5.073965 AGGTGGTTACAAGATCAAAGGGTTA 59.926 40.000 0.00 0.00 0.00 2.85
2993 14966 3.397955 AGGTGGTTACAAGATCAAAGGGT 59.602 43.478 0.00 0.00 0.00 4.34
2994 14967 4.010349 GAGGTGGTTACAAGATCAAAGGG 58.990 47.826 0.00 0.00 0.00 3.95
2995 14968 4.697352 CAGAGGTGGTTACAAGATCAAAGG 59.303 45.833 0.00 0.00 0.00 3.11
2996 14969 5.869753 CAGAGGTGGTTACAAGATCAAAG 57.130 43.478 0.00 0.00 0.00 2.77
3203 15176 9.871238 AGAGTAGTGTTTACATATGTACAAAGG 57.129 33.333 15.20 0.00 0.00 3.11
3232 15205 9.667107 GGCTCCTACTGCATGTATATTAAAATA 57.333 33.333 0.00 0.00 0.00 1.40
3233 15206 8.386264 AGGCTCCTACTGCATGTATATTAAAAT 58.614 33.333 0.00 0.00 0.00 1.82
3234 15207 7.745717 AGGCTCCTACTGCATGTATATTAAAA 58.254 34.615 0.00 0.00 0.00 1.52
3235 15208 7.316393 AGGCTCCTACTGCATGTATATTAAA 57.684 36.000 0.00 0.00 0.00 1.52
3236 15209 6.935240 AGGCTCCTACTGCATGTATATTAA 57.065 37.500 0.00 0.00 0.00 1.40
3237 15210 6.935240 AAGGCTCCTACTGCATGTATATTA 57.065 37.500 0.00 0.00 0.00 0.98
3238 15211 5.832539 AAGGCTCCTACTGCATGTATATT 57.167 39.130 0.00 0.00 0.00 1.28
3239 15212 5.280215 GGAAAGGCTCCTACTGCATGTATAT 60.280 44.000 0.00 0.00 41.61 0.86
3240 15213 4.040461 GGAAAGGCTCCTACTGCATGTATA 59.960 45.833 0.00 0.00 41.61 1.47
3241 15214 3.181450 GGAAAGGCTCCTACTGCATGTAT 60.181 47.826 0.00 0.00 41.61 2.29
3242 15215 2.170607 GGAAAGGCTCCTACTGCATGTA 59.829 50.000 0.00 0.00 41.61 2.29
3243 15216 1.065126 GGAAAGGCTCCTACTGCATGT 60.065 52.381 0.00 0.00 41.61 3.21
3244 15217 1.673168 GGAAAGGCTCCTACTGCATG 58.327 55.000 0.00 0.00 41.61 4.06
3254 15227 5.862678 AGATTAGACAGTAGGAAAGGCTC 57.137 43.478 0.00 0.00 0.00 4.70
3255 15228 7.069986 TGATAGATTAGACAGTAGGAAAGGCT 58.930 38.462 0.00 0.00 0.00 4.58
3283 15373 6.891908 ACTGGAAGATACTGGTGCATTATTTT 59.108 34.615 0.00 0.00 37.43 1.82
3392 15482 7.313731 ACATGGGATCCCTTCTAGAATACTTA 58.686 38.462 31.05 6.23 36.94 2.24
3427 15538 0.536006 GGTGCAGCTCTGTCTTGGTT 60.536 55.000 9.07 0.00 0.00 3.67
3428 15539 1.072159 GGTGCAGCTCTGTCTTGGT 59.928 57.895 9.07 0.00 0.00 3.67
3448 15573 3.252458 AGCACCATCCGTACAAAAGAAAC 59.748 43.478 0.00 0.00 0.00 2.78
3698 15827 9.034544 GGAATGCACATTTTTCTTATCCAATAC 57.965 33.333 0.00 0.00 0.00 1.89
3788 16010 8.877195 TCTAGTAAAAAGTTCACCCTAGAATGT 58.123 33.333 0.00 0.00 29.67 2.71
3947 16169 6.985653 TCCTGGAAGATCTCTATTAAGTGG 57.014 41.667 0.00 0.00 34.07 4.00
3974 16196 4.020928 TGCATTACCTCTCGTCCTTTGTAA 60.021 41.667 0.00 0.00 0.00 2.41
4066 16291 4.461081 AGATAATCCTCGAGGTGCTACATC 59.539 45.833 30.17 21.63 36.34 3.06
4118 16343 5.810074 AGTGCAACAGGTTTACAAATCAAAC 59.190 36.000 0.00 0.00 41.43 2.93
4125 16350 3.880490 CCTACAGTGCAACAGGTTTACAA 59.120 43.478 0.00 0.00 41.43 2.41
4127 16352 3.735591 TCCTACAGTGCAACAGGTTTAC 58.264 45.455 0.00 0.00 41.43 2.01
4172 16413 4.761975 ACCTCGTTTATTCGCTCCATTTA 58.238 39.130 0.00 0.00 0.00 1.40
4181 16422 2.124903 CATCCCGACCTCGTTTATTCG 58.875 52.381 0.00 0.00 37.74 3.34
4235 16476 8.561738 TTGTATTCCTGATGATGATGATGATG 57.438 34.615 0.00 0.00 0.00 3.07
4236 16477 9.232473 CTTTGTATTCCTGATGATGATGATGAT 57.768 33.333 0.00 0.00 0.00 2.45
4237 16478 8.215736 ACTTTGTATTCCTGATGATGATGATGA 58.784 33.333 0.00 0.00 0.00 2.92
4238 16479 8.392372 ACTTTGTATTCCTGATGATGATGATG 57.608 34.615 0.00 0.00 0.00 3.07
4240 16481 9.716531 GATACTTTGTATTCCTGATGATGATGA 57.283 33.333 0.00 0.00 0.00 2.92
4254 16495 9.739276 TCCATTTCTGACTTGATACTTTGTATT 57.261 29.630 0.00 0.00 0.00 1.89
4282 16523 7.343057 TGGTTGCATATAACAAAATCCATGGTA 59.657 33.333 12.58 0.00 32.22 3.25
4304 16545 0.555769 TCTTGGCCACTTCCTTGGTT 59.444 50.000 3.88 0.00 39.09 3.67
4345 16586 4.058124 TGACCAGTCATTGTCTTCTTTCG 58.942 43.478 0.00 0.00 34.14 3.46
4382 16623 9.489084 GTATCAACAGGTAATAATCAGCATGTA 57.511 33.333 0.00 0.00 37.40 2.29
4510 16758 1.588824 TTCTGCAAGGCATCCAAGCG 61.589 55.000 0.00 0.00 38.13 4.68
4709 17077 4.274459 GTCACTTTGTCAGCAAGATCTTGT 59.726 41.667 30.88 17.93 42.31 3.16
4786 17164 4.510038 TCAAAGTGAACTACGGTCTACC 57.490 45.455 0.00 0.00 0.00 3.18
4807 19826 3.500343 ACTTCTTGGTAAAGCTTGCCAT 58.500 40.909 19.70 5.89 45.05 4.40
4844 19907 8.716646 TTTTACAATCGAGCTGATAAATCTCA 57.283 30.769 0.00 0.00 35.84 3.27
5040 20118 8.110908 AGTATCCCTAGCTAAATCCAGTAGTAG 58.889 40.741 0.00 0.00 0.00 2.57
5112 23848 9.810545 TCGAGATATGAATACACAACAACAATA 57.189 29.630 0.00 0.00 0.00 1.90
5137 23873 4.799564 TTGACCAATTAACCATGGCTTC 57.200 40.909 13.04 0.00 40.51 3.86
5167 23904 8.776376 AAATTGATCCGCAAGTTGATATTTTT 57.224 26.923 7.16 0.00 42.57 1.94
5196 23935 2.222227 AGAATGGCCTTGGGAAGTTC 57.778 50.000 3.32 0.00 0.00 3.01
5228 23967 8.893563 ATATCATGGGTTAAAAGAAAAGTGGA 57.106 30.769 0.00 0.00 0.00 4.02
5266 24005 1.106285 GTGAATTCAGTGATGGGGCC 58.894 55.000 8.80 0.00 0.00 5.80
5323 24127 0.254747 CCTTCACCCTAATTGCCGGA 59.745 55.000 5.05 0.00 0.00 5.14
5343 24147 1.064389 CCCCTAAAAAGGAGCAGGAGG 60.064 57.143 0.00 0.00 0.00 4.30
5344 24148 1.064389 CCCCCTAAAAAGGAGCAGGAG 60.064 57.143 0.00 0.00 0.00 3.69
5348 24152 2.381961 ACATTCCCCCTAAAAAGGAGCA 59.618 45.455 0.00 0.00 0.00 4.26
5374 24178 4.017958 TGCACCAGATACATTCCCCTAAAA 60.018 41.667 0.00 0.00 0.00 1.52
5375 24179 3.525609 TGCACCAGATACATTCCCCTAAA 59.474 43.478 0.00 0.00 0.00 1.85
5376 24180 3.118038 GTGCACCAGATACATTCCCCTAA 60.118 47.826 5.22 0.00 0.00 2.69
5377 24181 2.438021 GTGCACCAGATACATTCCCCTA 59.562 50.000 5.22 0.00 0.00 3.53
5378 24182 1.212935 GTGCACCAGATACATTCCCCT 59.787 52.381 5.22 0.00 0.00 4.79
5379 24183 1.212935 AGTGCACCAGATACATTCCCC 59.787 52.381 14.63 0.00 0.00 4.81
5380 24184 2.292267 CAGTGCACCAGATACATTCCC 58.708 52.381 14.63 0.00 0.00 3.97
5381 24185 2.292267 CCAGTGCACCAGATACATTCC 58.708 52.381 14.63 0.00 0.00 3.01
5382 24186 2.679837 CACCAGTGCACCAGATACATTC 59.320 50.000 14.63 0.00 0.00 2.67
5383 24187 2.040278 ACACCAGTGCACCAGATACATT 59.960 45.455 14.63 0.00 0.00 2.71
5384 24188 1.630369 ACACCAGTGCACCAGATACAT 59.370 47.619 14.63 0.00 0.00 2.29
5385 24189 1.055849 ACACCAGTGCACCAGATACA 58.944 50.000 14.63 0.00 0.00 2.29
5386 24190 2.185004 AACACCAGTGCACCAGATAC 57.815 50.000 14.63 0.00 0.00 2.24
5387 24191 2.158682 ACAAACACCAGTGCACCAGATA 60.159 45.455 14.63 0.00 0.00 1.98
5388 24192 1.321474 CAAACACCAGTGCACCAGAT 58.679 50.000 14.63 0.00 0.00 2.90
5389 24193 0.034574 ACAAACACCAGTGCACCAGA 60.035 50.000 14.63 0.00 0.00 3.86
5390 24194 1.603802 CTACAAACACCAGTGCACCAG 59.396 52.381 14.63 7.78 0.00 4.00
5391 24195 1.065053 ACTACAAACACCAGTGCACCA 60.065 47.619 14.63 0.00 0.00 4.17
5399 24203 4.193090 CACTGGTAACACTACAAACACCA 58.807 43.478 0.00 0.00 46.17 4.17
5404 24208 4.877251 GTCCAACACTGGTAACACTACAAA 59.123 41.667 0.00 0.00 46.17 2.83
5409 24213 1.808891 GCGTCCAACACTGGTAACACT 60.809 52.381 0.00 0.00 46.17 3.55
5413 24217 0.466543 ACAGCGTCCAACACTGGTAA 59.533 50.000 0.78 0.00 43.97 2.85
5417 24221 0.992072 CGATACAGCGTCCAACACTG 59.008 55.000 0.00 0.00 34.62 3.66
5418 24222 0.736325 GCGATACAGCGTCCAACACT 60.736 55.000 0.00 0.00 0.00 3.55
5421 24225 1.006832 AATGCGATACAGCGTCCAAC 58.993 50.000 0.00 0.00 40.67 3.77
5422 24226 1.006086 CAATGCGATACAGCGTCCAA 58.994 50.000 0.00 0.00 40.67 3.53
5423 24227 0.108377 ACAATGCGATACAGCGTCCA 60.108 50.000 0.00 0.00 40.67 4.02
5424 24228 1.847818 TACAATGCGATACAGCGTCC 58.152 50.000 0.00 0.00 40.67 4.79
5425 24229 3.918258 TTTACAATGCGATACAGCGTC 57.082 42.857 0.00 0.00 40.67 5.19
5426 24230 4.094294 ACATTTTACAATGCGATACAGCGT 59.906 37.500 1.43 0.00 43.39 5.07
5427 24231 4.587306 ACATTTTACAATGCGATACAGCG 58.413 39.130 1.43 0.00 43.39 5.18
5428 24232 6.526325 TGAAACATTTTACAATGCGATACAGC 59.474 34.615 1.43 0.00 43.39 4.40
5429 24233 8.446489 TTGAAACATTTTACAATGCGATACAG 57.554 30.769 1.43 0.00 43.39 2.74
5430 24234 8.803201 TTTGAAACATTTTACAATGCGATACA 57.197 26.923 1.43 0.00 43.39 2.29
5457 24261 9.772973 TTAGTGTGCTAGACTTTTTCAGATTTA 57.227 29.630 0.00 0.00 0.00 1.40
5461 24265 6.479001 GTGTTAGTGTGCTAGACTTTTTCAGA 59.521 38.462 0.00 0.00 0.00 3.27
5462 24266 6.257849 TGTGTTAGTGTGCTAGACTTTTTCAG 59.742 38.462 0.00 0.00 0.00 3.02
5463 24267 6.110033 TGTGTTAGTGTGCTAGACTTTTTCA 58.890 36.000 0.00 0.00 0.00 2.69
5464 24268 6.598753 TGTGTTAGTGTGCTAGACTTTTTC 57.401 37.500 0.00 0.00 0.00 2.29
5465 24269 6.995511 TTGTGTTAGTGTGCTAGACTTTTT 57.004 33.333 0.00 0.00 0.00 1.94
5466 24270 6.373216 TGTTTGTGTTAGTGTGCTAGACTTTT 59.627 34.615 0.00 0.00 0.00 2.27
5470 24274 4.809426 AGTGTTTGTGTTAGTGTGCTAGAC 59.191 41.667 0.00 0.00 0.00 2.59
5471 24275 5.018539 AGTGTTTGTGTTAGTGTGCTAGA 57.981 39.130 0.00 0.00 0.00 2.43
5472 24276 6.838198 TTAGTGTTTGTGTTAGTGTGCTAG 57.162 37.500 0.00 0.00 0.00 3.42
5474 24278 5.588648 ACATTAGTGTTTGTGTTAGTGTGCT 59.411 36.000 0.00 0.00 34.01 4.40
5475 24279 5.816919 ACATTAGTGTTTGTGTTAGTGTGC 58.183 37.500 0.00 0.00 34.01 4.57
5480 24284 9.646336 GACAACTTACATTAGTGTTTGTGTTAG 57.354 33.333 10.55 0.00 37.09 2.34
5482 24286 7.966204 GTGACAACTTACATTAGTGTTTGTGTT 59.034 33.333 10.55 3.12 37.09 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.