Multiple sequence alignment - TraesCS6A01G032700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G032700 chr6A 100.000 3106 0 0 1 3106 16336598 16339703 0.000000e+00 5736.0
1 TraesCS6A01G032700 chr6A 86.730 633 32 19 743 1370 16290028 16289443 0.000000e+00 656.0
2 TraesCS6A01G032700 chr6A 93.603 297 18 1 2574 2869 81124930 81124634 2.840000e-120 442.0
3 TraesCS6A01G032700 chr6D 94.265 837 37 8 15 843 15600366 15599533 0.000000e+00 1269.0
4 TraesCS6A01G032700 chr6D 93.711 811 38 5 1302 2108 15640245 15641046 0.000000e+00 1203.0
5 TraesCS6A01G032700 chr6D 91.043 882 50 13 1339 2214 15586601 15585743 0.000000e+00 1164.0
6 TraesCS6A01G032700 chr6D 86.642 1078 59 42 449 1508 15552185 15551175 0.000000e+00 1114.0
7 TraesCS6A01G032700 chr6D 89.655 551 43 10 1 543 15552725 15552181 0.000000e+00 689.0
8 TraesCS6A01G032700 chr6D 90.400 250 12 6 947 1193 15639949 15640189 5.000000e-83 318.0
9 TraesCS6A01G032700 chr6B 94.081 811 35 7 1302 2108 27668934 27669735 0.000000e+00 1219.0
10 TraesCS6A01G032700 chr6B 89.733 935 58 15 1 921 27487256 27486346 0.000000e+00 1160.0
11 TraesCS6A01G032700 chr6B 89.733 935 58 15 1 921 27533846 27532936 0.000000e+00 1160.0
12 TraesCS6A01G032700 chr6B 92.373 708 41 5 1574 2272 27455628 27454925 0.000000e+00 996.0
13 TraesCS6A01G032700 chr6B 92.232 708 42 5 1574 2272 27485760 27485057 0.000000e+00 990.0
14 TraesCS6A01G032700 chr6B 92.090 708 43 5 1574 2272 27419560 27418857 0.000000e+00 985.0
15 TraesCS6A01G032700 chr6B 92.090 708 43 5 1574 2272 27532350 27531647 0.000000e+00 985.0
16 TraesCS6A01G032700 chr6B 92.255 439 25 6 486 921 27420578 27420146 5.690000e-172 614.0
17 TraesCS6A01G032700 chr6B 91.800 439 27 6 486 921 27456646 27456214 1.230000e-168 603.0
18 TraesCS6A01G032700 chr6B 87.500 440 21 19 990 1426 27456181 27455773 7.790000e-131 477.0
19 TraesCS6A01G032700 chr6B 87.273 440 22 19 990 1426 27420113 27419705 3.630000e-129 472.0
20 TraesCS6A01G032700 chr6B 87.273 440 22 19 990 1426 27486313 27485905 3.630000e-129 472.0
21 TraesCS6A01G032700 chr6B 87.273 440 22 19 990 1426 27532903 27532495 3.630000e-129 472.0
22 TraesCS6A01G032700 chr6B 84.158 303 23 11 559 860 27668208 27668486 1.420000e-68 270.0
23 TraesCS6A01G032700 chrUn 93.379 725 30 7 1562 2272 319197574 319196854 0.000000e+00 1057.0
24 TraesCS6A01G032700 chrUn 93.533 634 34 4 1571 2203 76409290 76409917 0.000000e+00 937.0
25 TraesCS6A01G032700 chrUn 85.490 510 32 18 1013 1522 319198050 319197583 7.740000e-136 494.0
26 TraesCS6A01G032700 chrUn 85.490 510 32 18 1013 1522 347746851 347746384 7.740000e-136 494.0
27 TraesCS6A01G032700 chrUn 87.273 440 22 19 990 1426 441169573 441169165 3.630000e-129 472.0
28 TraesCS6A01G032700 chrUn 93.204 309 19 2 2274 2581 96179360 96179053 1.310000e-123 453.0
29 TraesCS6A01G032700 chrUn 95.397 239 10 1 2868 3106 96179054 96178817 2.260000e-101 379.0
30 TraesCS6A01G032700 chrUn 91.818 220 14 3 710 926 76417691 76417473 1.400000e-78 303.0
31 TraesCS6A01G032700 chrUn 88.889 207 19 4 1300 1505 76409077 76409280 5.140000e-63 252.0
32 TraesCS6A01G032700 chr1B 81.208 894 87 34 559 1442 405674160 405673338 0.000000e+00 645.0
33 TraesCS6A01G032700 chr1B 93.243 296 20 0 2571 2866 381224944 381224649 1.320000e-118 436.0
34 TraesCS6A01G032700 chr1D 80.493 892 96 33 559 1433 300667983 300667153 2.050000e-171 612.0
35 TraesCS6A01G032700 chr1D 93.831 308 18 1 2271 2578 457088393 457088699 2.180000e-126 462.0
36 TraesCS6A01G032700 chr1D 95.816 239 9 1 2868 3106 457088701 457088938 4.860000e-103 385.0
37 TraesCS6A01G032700 chr1A 79.646 904 91 41 559 1442 374960206 374959376 5.810000e-157 564.0
38 TraesCS6A01G032700 chr1A 94.613 297 15 1 2573 2869 512895378 512895083 2.820000e-125 459.0
39 TraesCS6A01G032700 chr1A 94.406 286 16 0 2581 2866 171452855 171452570 1.020000e-119 440.0
40 TraesCS6A01G032700 chr2A 96.167 287 11 0 2580 2866 216602152 216602438 1.300000e-128 470.0
41 TraesCS6A01G032700 chr2A 95.172 290 12 2 2578 2866 509312122 509312410 1.020000e-124 457.0
42 TraesCS6A01G032700 chr2A 90.698 215 12 2 2892 3106 619848486 619848692 2.360000e-71 279.0
43 TraesCS6A01G032700 chr2A 95.652 138 5 1 2444 2581 619848036 619848172 1.450000e-53 220.0
44 TraesCS6A01G032700 chr2A 96.907 97 2 1 2323 2418 619847947 619848043 8.910000e-36 161.0
45 TraesCS6A01G032700 chr5A 95.156 289 13 1 2578 2866 649477820 649478107 3.650000e-124 455.0
46 TraesCS6A01G032700 chr7D 93.898 295 17 1 2580 2874 441858368 441858661 7.900000e-121 444.0
47 TraesCS6A01G032700 chr7A 92.763 304 20 2 2573 2876 213107659 213107358 3.680000e-119 438.0
48 TraesCS6A01G032700 chr3D 79.167 312 54 11 2275 2581 71750117 71749812 4.060000e-49 206.0
49 TraesCS6A01G032700 chr2D 94.231 104 5 1 3004 3106 118119764 118119661 1.150000e-34 158.0
50 TraesCS6A01G032700 chr5B 76.963 191 42 2 2278 2467 427268459 427268270 1.180000e-19 108.0
51 TraesCS6A01G032700 chr2B 73.504 234 52 9 2267 2494 703801593 703801822 2.570000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G032700 chr6A 16336598 16339703 3105 False 5736.000000 5736 100.000000 1 3106 1 chr6A.!!$F1 3105
1 TraesCS6A01G032700 chr6A 16289443 16290028 585 True 656.000000 656 86.730000 743 1370 1 chr6A.!!$R1 627
2 TraesCS6A01G032700 chr6D 15599533 15600366 833 True 1269.000000 1269 94.265000 15 843 1 chr6D.!!$R2 828
3 TraesCS6A01G032700 chr6D 15585743 15586601 858 True 1164.000000 1164 91.043000 1339 2214 1 chr6D.!!$R1 875
4 TraesCS6A01G032700 chr6D 15551175 15552725 1550 True 901.500000 1114 88.148500 1 1508 2 chr6D.!!$R3 1507
5 TraesCS6A01G032700 chr6D 15639949 15641046 1097 False 760.500000 1203 92.055500 947 2108 2 chr6D.!!$F1 1161
6 TraesCS6A01G032700 chr6B 27485057 27487256 2199 True 874.000000 1160 89.746000 1 2272 3 chr6B.!!$R3 2271
7 TraesCS6A01G032700 chr6B 27531647 27533846 2199 True 872.333333 1160 89.698667 1 2272 3 chr6B.!!$R4 2271
8 TraesCS6A01G032700 chr6B 27668208 27669735 1527 False 744.500000 1219 89.119500 559 2108 2 chr6B.!!$F1 1549
9 TraesCS6A01G032700 chr6B 27454925 27456646 1721 True 692.000000 996 90.557667 486 2272 3 chr6B.!!$R2 1786
10 TraesCS6A01G032700 chr6B 27418857 27420578 1721 True 690.333333 985 90.539333 486 2272 3 chr6B.!!$R1 1786
11 TraesCS6A01G032700 chrUn 319196854 319198050 1196 True 775.500000 1057 89.434500 1013 2272 2 chrUn.!!$R5 1259
12 TraesCS6A01G032700 chrUn 76409077 76409917 840 False 594.500000 937 91.211000 1300 2203 2 chrUn.!!$F1 903
13 TraesCS6A01G032700 chrUn 96178817 96179360 543 True 416.000000 453 94.300500 2274 3106 2 chrUn.!!$R4 832
14 TraesCS6A01G032700 chr1B 405673338 405674160 822 True 645.000000 645 81.208000 559 1442 1 chr1B.!!$R2 883
15 TraesCS6A01G032700 chr1D 300667153 300667983 830 True 612.000000 612 80.493000 559 1433 1 chr1D.!!$R1 874
16 TraesCS6A01G032700 chr1D 457088393 457088938 545 False 423.500000 462 94.823500 2271 3106 2 chr1D.!!$F1 835
17 TraesCS6A01G032700 chr1A 374959376 374960206 830 True 564.000000 564 79.646000 559 1442 1 chr1A.!!$R2 883
18 TraesCS6A01G032700 chr2A 619847947 619848692 745 False 220.000000 279 94.419000 2323 3106 3 chr2A.!!$F3 783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 962 1.51231 GCTCGTCGTTCTCACCTCG 60.512 63.158 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2579 2925 0.035056 CTCCAAACCGAATGAGCCCT 60.035 55.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 6.604735 TTTTGCAAAGACACTCTAGAAGAC 57.395 37.500 12.41 0.00 0.00 3.01
131 133 3.909430 AGCGTCTTTTCATCGAACTGTA 58.091 40.909 0.00 0.00 0.00 2.74
132 134 4.495422 AGCGTCTTTTCATCGAACTGTAT 58.505 39.130 0.00 0.00 0.00 2.29
159 165 2.411290 CACACACGGTTTGCACCC 59.589 61.111 0.00 0.00 40.52 4.61
160 166 2.044848 ACACACGGTTTGCACCCA 60.045 55.556 2.71 0.00 40.52 4.51
161 167 1.679305 ACACACGGTTTGCACCCAA 60.679 52.632 2.71 0.00 40.52 4.12
205 211 3.302170 GTCATCGCACACGTTTTGTTTTT 59.698 39.130 0.00 0.00 35.67 1.94
323 331 3.499537 CGATGGTGCTTACATGCATACAT 59.500 43.478 0.00 8.54 45.23 2.29
484 591 8.015658 GCGGATCCATATTTCATACTACAAAAC 58.984 37.037 13.41 0.00 0.00 2.43
505 612 5.633830 ACAAAGTTGGACATGATTAGCAG 57.366 39.130 0.00 0.00 0.00 4.24
662 785 4.074259 CCCAAATGATTAGCGGATGATCA 58.926 43.478 3.12 3.12 38.20 2.92
766 895 2.557869 TGTGACCCTGTAGCCCTAAAT 58.442 47.619 0.00 0.00 0.00 1.40
833 962 1.512310 GCTCGTCGTTCTCACCTCG 60.512 63.158 0.00 0.00 0.00 4.63
914 1048 4.846779 AGTTCACAACACAACACAAACT 57.153 36.364 0.00 0.00 0.00 2.66
1030 1187 0.888736 CTCCACCAACGACATTGCCA 60.889 55.000 0.00 0.00 36.93 4.92
1187 1344 1.376295 GCCCCAACGACAACGGTAT 60.376 57.895 0.00 0.00 44.46 2.73
1193 1350 0.672401 AACGACAACGGTATGCCCAG 60.672 55.000 0.00 0.00 44.46 4.45
1194 1351 2.461110 CGACAACGGTATGCCCAGC 61.461 63.158 0.00 0.00 35.72 4.85
1195 1352 2.045340 ACAACGGTATGCCCAGCC 60.045 61.111 0.00 0.00 0.00 4.85
1196 1353 2.272146 CAACGGTATGCCCAGCCT 59.728 61.111 0.00 0.00 0.00 4.58
1197 1354 1.268992 ACAACGGTATGCCCAGCCTA 61.269 55.000 0.00 0.00 0.00 3.93
1198 1355 0.108585 CAACGGTATGCCCAGCCTAT 59.891 55.000 0.00 0.00 0.00 2.57
1199 1356 1.346395 CAACGGTATGCCCAGCCTATA 59.654 52.381 0.00 0.00 0.00 1.31
1200 1357 1.952621 ACGGTATGCCCAGCCTATAT 58.047 50.000 0.00 0.00 0.00 0.86
1201 1358 1.555075 ACGGTATGCCCAGCCTATATG 59.445 52.381 0.00 0.00 0.00 1.78
1202 1359 1.555075 CGGTATGCCCAGCCTATATGT 59.445 52.381 0.00 0.00 0.00 2.29
1203 1360 2.027192 CGGTATGCCCAGCCTATATGTT 60.027 50.000 0.00 0.00 0.00 2.71
1204 1361 3.610911 GGTATGCCCAGCCTATATGTTC 58.389 50.000 0.00 0.00 0.00 3.18
1205 1362 2.887151 ATGCCCAGCCTATATGTTCC 57.113 50.000 0.00 0.00 0.00 3.62
1206 1363 0.396435 TGCCCAGCCTATATGTTCCG 59.604 55.000 0.00 0.00 0.00 4.30
1220 1381 2.031870 TGTTCCGATCATCCGATGACT 58.968 47.619 13.36 3.48 43.01 3.41
1254 1428 3.883779 CATCACATGCGTAGTGTGC 57.116 52.632 10.70 0.00 45.01 4.57
1255 1429 0.025384 CATCACATGCGTAGTGTGCG 59.975 55.000 10.70 0.00 45.01 5.34
1259 1433 1.130411 CATGCGTAGTGTGCGTGTG 59.870 57.895 0.00 0.00 42.88 3.82
1274 1544 3.193903 TGCGTGTGCCAACTTATACTAGA 59.806 43.478 0.00 0.00 41.78 2.43
1293 1563 7.618019 ACTAGAAATAATGCTGATCTACCCA 57.382 36.000 0.00 0.00 0.00 4.51
1294 1564 8.212259 ACTAGAAATAATGCTGATCTACCCAT 57.788 34.615 0.00 0.00 0.00 4.00
1295 1565 8.099537 ACTAGAAATAATGCTGATCTACCCATG 58.900 37.037 0.00 0.00 0.00 3.66
1296 1566 6.243900 AGAAATAATGCTGATCTACCCATGG 58.756 40.000 4.14 4.14 0.00 3.66
1297 1567 5.848286 AATAATGCTGATCTACCCATGGA 57.152 39.130 15.22 0.00 0.00 3.41
1298 1568 6.398655 AATAATGCTGATCTACCCATGGAT 57.601 37.500 15.22 0.00 0.00 3.41
1299 1569 7.515004 AATAATGCTGATCTACCCATGGATA 57.485 36.000 15.22 0.00 0.00 2.59
1445 1771 8.862550 AGGTACGTACTACTGCATTAATAAAC 57.137 34.615 24.07 2.50 0.00 2.01
1459 1785 3.495434 AATAAACCCGACACCAGACAA 57.505 42.857 0.00 0.00 0.00 3.18
1464 1790 0.673644 CCCGACACCAGACAATGTCC 60.674 60.000 10.12 0.00 41.87 4.02
1482 1808 7.175990 ACAATGTCCGTTAAATTAGTTGGTCAT 59.824 33.333 0.00 0.00 0.00 3.06
1493 1819 2.233271 AGTTGGTCATGCTCAAACCTG 58.767 47.619 2.55 0.00 34.05 4.00
1498 1824 0.895100 TCATGCTCAAACCTGCCACC 60.895 55.000 0.00 0.00 0.00 4.61
1499 1825 1.153524 ATGCTCAAACCTGCCACCA 59.846 52.632 0.00 0.00 0.00 4.17
1500 1826 0.251922 ATGCTCAAACCTGCCACCAT 60.252 50.000 0.00 0.00 0.00 3.55
1505 1831 1.152483 AAACCTGCCACCATGTGCT 60.152 52.632 0.00 0.00 31.34 4.40
1512 1838 0.320946 GCCACCATGTGCTTGCAAAT 60.321 50.000 0.00 0.00 31.34 2.32
1513 1839 1.878948 GCCACCATGTGCTTGCAAATT 60.879 47.619 0.00 0.00 31.34 1.82
1518 1844 4.691685 CACCATGTGCTTGCAAATTTATGT 59.308 37.500 0.00 0.00 0.00 2.29
1526 1852 6.142798 GTGCTTGCAAATTTATGTATCCATCG 59.857 38.462 0.00 0.00 32.29 3.84
1527 1853 5.630680 GCTTGCAAATTTATGTATCCATCGG 59.369 40.000 0.00 0.00 32.29 4.18
1902 2235 0.818445 CATGGAGCTCATGCAGACCC 60.818 60.000 17.19 0.00 45.58 4.46
2036 2369 2.036098 TCCGGGAAGACGCTGGTA 59.964 61.111 0.00 0.00 0.00 3.25
2087 2420 0.608640 CGGACAAAGCCTACTGGTCT 59.391 55.000 0.00 0.00 33.62 3.85
2120 2453 8.195436 CAGTTCTATTGATTTTGGCTCAATCAT 58.805 33.333 11.22 6.26 41.28 2.45
2122 2455 7.885009 TCTATTGATTTTGGCTCAATCATCA 57.115 32.000 11.22 4.54 41.28 3.07
2123 2456 7.937649 TCTATTGATTTTGGCTCAATCATCAG 58.062 34.615 11.22 10.98 41.28 2.90
2125 2458 4.346730 TGATTTTGGCTCAATCATCAGGT 58.653 39.130 7.55 0.00 36.03 4.00
2126 2459 4.158949 TGATTTTGGCTCAATCATCAGGTG 59.841 41.667 7.55 0.00 36.03 4.00
2127 2460 1.466856 TTGGCTCAATCATCAGGTGC 58.533 50.000 0.00 0.00 0.00 5.01
2128 2461 0.328926 TGGCTCAATCATCAGGTGCA 59.671 50.000 0.00 0.00 0.00 4.57
2198 2535 3.512329 TCTCACCAAACGCTACCTATTGA 59.488 43.478 0.00 0.00 0.00 2.57
2239 2584 2.743636 TGAAGGTCTTTAGCGAGGTG 57.256 50.000 0.00 0.00 0.00 4.00
2252 2597 8.500773 TCTTTAGCGAGGTGTATTTGTAAAAAG 58.499 33.333 0.00 0.00 0.00 2.27
2291 2636 9.667107 TTCTTAAAGAGTCAATTACACCATAGG 57.333 33.333 0.00 0.00 0.00 2.57
2305 2650 3.182152 ACCATAGGTGCTAGAACTTGGT 58.818 45.455 14.40 14.40 32.98 3.67
2306 2651 3.197983 ACCATAGGTGCTAGAACTTGGTC 59.802 47.826 14.40 0.00 32.98 4.02
2311 2656 5.153950 AGGTGCTAGAACTTGGTCTTAAG 57.846 43.478 0.00 0.00 0.00 1.85
2325 2670 4.657039 TGGTCTTAAGGGTCACTTTAGTGT 59.343 41.667 9.53 0.00 45.76 3.55
2407 2752 7.040961 ACAGTGCAAACCTTATTTGTATACGTT 60.041 33.333 0.00 0.00 0.00 3.99
2436 2781 2.786539 GATGAGGTGTGCCAGCGTGA 62.787 60.000 0.00 0.00 36.92 4.35
2495 2841 1.340889 GTCATGTGGCCTGCTTTTTCA 59.659 47.619 3.32 0.00 0.00 2.69
2577 2923 6.815089 TGTCAGGAACAGCAAAATTTACATT 58.185 32.000 0.00 0.00 32.81 2.71
2578 2924 6.700960 TGTCAGGAACAGCAAAATTTACATTG 59.299 34.615 0.00 0.00 32.81 2.82
2579 2925 6.922957 GTCAGGAACAGCAAAATTTACATTGA 59.077 34.615 0.00 0.00 0.00 2.57
2580 2926 7.115378 GTCAGGAACAGCAAAATTTACATTGAG 59.885 37.037 0.00 0.00 0.00 3.02
2581 2927 6.366877 CAGGAACAGCAAAATTTACATTGAGG 59.633 38.462 0.00 0.00 0.00 3.86
2582 2928 5.639082 GGAACAGCAAAATTTACATTGAGGG 59.361 40.000 0.00 0.00 0.00 4.30
2583 2929 4.568956 ACAGCAAAATTTACATTGAGGGC 58.431 39.130 0.00 0.00 0.00 5.19
2584 2930 4.284234 ACAGCAAAATTTACATTGAGGGCT 59.716 37.500 0.00 0.00 0.00 5.19
2585 2931 4.866486 CAGCAAAATTTACATTGAGGGCTC 59.134 41.667 0.00 0.00 0.00 4.70
2586 2932 4.527816 AGCAAAATTTACATTGAGGGCTCA 59.472 37.500 0.00 0.00 37.91 4.26
2587 2933 5.188359 AGCAAAATTTACATTGAGGGCTCAT 59.812 36.000 0.00 0.00 39.64 2.90
2588 2934 5.876460 GCAAAATTTACATTGAGGGCTCATT 59.124 36.000 0.00 0.00 39.64 2.57
2589 2935 6.036408 GCAAAATTTACATTGAGGGCTCATTC 59.964 38.462 0.00 0.00 39.64 2.67
2590 2936 5.505173 AATTTACATTGAGGGCTCATTCG 57.495 39.130 0.00 0.00 39.64 3.34
2591 2937 2.620251 TACATTGAGGGCTCATTCGG 57.380 50.000 0.00 0.00 39.64 4.30
2592 2938 0.620556 ACATTGAGGGCTCATTCGGT 59.379 50.000 0.00 0.00 39.64 4.69
2593 2939 1.004745 ACATTGAGGGCTCATTCGGTT 59.995 47.619 0.00 0.00 39.64 4.44
2594 2940 2.094675 CATTGAGGGCTCATTCGGTTT 58.905 47.619 0.00 0.00 39.64 3.27
2595 2941 1.533625 TTGAGGGCTCATTCGGTTTG 58.466 50.000 0.00 0.00 39.64 2.93
2596 2942 0.322456 TGAGGGCTCATTCGGTTTGG 60.322 55.000 0.00 0.00 34.14 3.28
2597 2943 0.035439 GAGGGCTCATTCGGTTTGGA 60.035 55.000 0.00 0.00 0.00 3.53
2598 2944 0.035056 AGGGCTCATTCGGTTTGGAG 60.035 55.000 0.00 0.00 0.00 3.86
2599 2945 1.032114 GGGCTCATTCGGTTTGGAGG 61.032 60.000 0.00 0.00 0.00 4.30
2600 2946 0.035439 GGCTCATTCGGTTTGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
2601 2947 1.613255 GGCTCATTCGGTTTGGAGGAA 60.613 52.381 0.00 0.00 0.00 3.36
2602 2948 2.159382 GCTCATTCGGTTTGGAGGAAA 58.841 47.619 0.00 0.00 0.00 3.13
2603 2949 2.755103 GCTCATTCGGTTTGGAGGAAAT 59.245 45.455 0.00 0.00 0.00 2.17
2604 2950 3.181496 GCTCATTCGGTTTGGAGGAAATC 60.181 47.826 0.00 0.00 0.00 2.17
2605 2951 4.009675 CTCATTCGGTTTGGAGGAAATCA 58.990 43.478 0.00 0.00 0.00 2.57
2606 2952 4.402829 TCATTCGGTTTGGAGGAAATCAA 58.597 39.130 0.00 0.00 0.00 2.57
2607 2953 4.830046 TCATTCGGTTTGGAGGAAATCAAA 59.170 37.500 0.00 0.00 0.00 2.69
2608 2954 5.303078 TCATTCGGTTTGGAGGAAATCAAAA 59.697 36.000 0.00 0.00 35.08 2.44
2614 2960 5.458015 GTTTGGAGGAAATCAAAACGTAGG 58.542 41.667 0.00 0.00 41.01 3.18
2615 2961 4.627284 TGGAGGAAATCAAAACGTAGGA 57.373 40.909 0.00 0.00 0.00 2.94
2616 2962 4.975631 TGGAGGAAATCAAAACGTAGGAA 58.024 39.130 0.00 0.00 0.00 3.36
2617 2963 5.566469 TGGAGGAAATCAAAACGTAGGAAT 58.434 37.500 0.00 0.00 0.00 3.01
2618 2964 6.007703 TGGAGGAAATCAAAACGTAGGAATT 58.992 36.000 0.00 0.00 0.00 2.17
2619 2965 7.169591 TGGAGGAAATCAAAACGTAGGAATTA 58.830 34.615 0.00 0.00 0.00 1.40
2620 2966 7.335924 TGGAGGAAATCAAAACGTAGGAATTAG 59.664 37.037 0.00 0.00 0.00 1.73
2621 2967 7.551617 GGAGGAAATCAAAACGTAGGAATTAGA 59.448 37.037 0.00 0.00 0.00 2.10
2622 2968 8.857694 AGGAAATCAAAACGTAGGAATTAGAA 57.142 30.769 0.00 0.00 0.00 2.10
2623 2969 8.947115 AGGAAATCAAAACGTAGGAATTAGAAG 58.053 33.333 0.00 0.00 0.00 2.85
2624 2970 8.727910 GGAAATCAAAACGTAGGAATTAGAAGT 58.272 33.333 0.00 0.00 0.00 3.01
2627 2973 9.939802 AATCAAAACGTAGGAATTAGAAGTAGT 57.060 29.630 0.00 0.00 0.00 2.73
2648 2994 8.763601 AGTAGTATAGGAATTTGATAGGATGGC 58.236 37.037 0.00 0.00 0.00 4.40
2649 2995 7.574021 AGTATAGGAATTTGATAGGATGGCA 57.426 36.000 0.00 0.00 0.00 4.92
2650 2996 7.398024 AGTATAGGAATTTGATAGGATGGCAC 58.602 38.462 0.00 0.00 0.00 5.01
2651 2997 4.803329 AGGAATTTGATAGGATGGCACT 57.197 40.909 0.00 0.00 0.00 4.40
2652 2998 5.134725 AGGAATTTGATAGGATGGCACTT 57.865 39.130 0.00 0.00 0.00 3.16
2653 2999 4.891756 AGGAATTTGATAGGATGGCACTTG 59.108 41.667 0.00 0.00 0.00 3.16
2654 3000 4.500375 GGAATTTGATAGGATGGCACTTGC 60.500 45.833 0.00 0.00 41.14 4.01
2670 3016 6.147864 GCACTTGCCATCCTATAAAATTGA 57.852 37.500 0.00 0.00 34.31 2.57
2671 3017 5.979517 GCACTTGCCATCCTATAAAATTGAC 59.020 40.000 0.00 0.00 34.31 3.18
2672 3018 6.183360 GCACTTGCCATCCTATAAAATTGACT 60.183 38.462 0.00 0.00 34.31 3.41
2673 3019 7.631377 GCACTTGCCATCCTATAAAATTGACTT 60.631 37.037 0.00 0.00 34.31 3.01
2674 3020 8.902806 CACTTGCCATCCTATAAAATTGACTTA 58.097 33.333 0.00 0.00 0.00 2.24
2675 3021 8.903820 ACTTGCCATCCTATAAAATTGACTTAC 58.096 33.333 0.00 0.00 0.00 2.34
2676 3022 7.817418 TGCCATCCTATAAAATTGACTTACC 57.183 36.000 0.00 0.00 0.00 2.85
2677 3023 7.582719 TGCCATCCTATAAAATTGACTTACCT 58.417 34.615 0.00 0.00 0.00 3.08
2678 3024 7.719633 TGCCATCCTATAAAATTGACTTACCTC 59.280 37.037 0.00 0.00 0.00 3.85
2679 3025 7.095187 GCCATCCTATAAAATTGACTTACCTCG 60.095 40.741 0.00 0.00 0.00 4.63
2680 3026 7.931948 CCATCCTATAAAATTGACTTACCTCGT 59.068 37.037 0.00 0.00 0.00 4.18
2681 3027 9.326413 CATCCTATAAAATTGACTTACCTCGTT 57.674 33.333 0.00 0.00 0.00 3.85
2682 3028 8.937634 TCCTATAAAATTGACTTACCTCGTTC 57.062 34.615 0.00 0.00 0.00 3.95
2683 3029 7.983484 TCCTATAAAATTGACTTACCTCGTTCC 59.017 37.037 0.00 0.00 0.00 3.62
2684 3030 7.985752 CCTATAAAATTGACTTACCTCGTTCCT 59.014 37.037 0.00 0.00 0.00 3.36
2686 3032 8.713737 ATAAAATTGACTTACCTCGTTCCTAC 57.286 34.615 0.00 0.00 0.00 3.18
2698 3044 3.548216 CGTTCCTACGCGTAAAATGAG 57.452 47.619 20.97 9.01 41.41 2.90
2699 3045 2.284855 CGTTCCTACGCGTAAAATGAGC 60.285 50.000 20.97 14.10 41.41 4.26
2700 3046 2.928116 GTTCCTACGCGTAAAATGAGCT 59.072 45.455 20.97 0.00 0.00 4.09
2701 3047 3.241067 TCCTACGCGTAAAATGAGCTT 57.759 42.857 20.97 0.00 0.00 3.74
2702 3048 3.592059 TCCTACGCGTAAAATGAGCTTT 58.408 40.909 20.97 0.00 0.00 3.51
2703 3049 3.369756 TCCTACGCGTAAAATGAGCTTTG 59.630 43.478 20.97 3.65 0.00 2.77
2704 3050 3.369756 CCTACGCGTAAAATGAGCTTTGA 59.630 43.478 20.97 0.00 0.00 2.69
2705 3051 3.455619 ACGCGTAAAATGAGCTTTGAG 57.544 42.857 11.67 0.00 0.00 3.02
2706 3052 2.806244 ACGCGTAAAATGAGCTTTGAGT 59.194 40.909 11.67 0.00 0.00 3.41
2707 3053 3.155998 CGCGTAAAATGAGCTTTGAGTG 58.844 45.455 0.00 0.00 0.00 3.51
2708 3054 3.492313 GCGTAAAATGAGCTTTGAGTGG 58.508 45.455 0.00 0.00 0.00 4.00
2709 3055 3.188460 GCGTAAAATGAGCTTTGAGTGGA 59.812 43.478 0.00 0.00 0.00 4.02
2710 3056 4.142600 GCGTAAAATGAGCTTTGAGTGGAT 60.143 41.667 0.00 0.00 0.00 3.41
2711 3057 5.327091 CGTAAAATGAGCTTTGAGTGGATG 58.673 41.667 0.00 0.00 0.00 3.51
2712 3058 5.106555 CGTAAAATGAGCTTTGAGTGGATGT 60.107 40.000 0.00 0.00 0.00 3.06
2713 3059 4.778534 AAATGAGCTTTGAGTGGATGTG 57.221 40.909 0.00 0.00 0.00 3.21
2714 3060 2.936919 TGAGCTTTGAGTGGATGTGT 57.063 45.000 0.00 0.00 0.00 3.72
2715 3061 4.558226 ATGAGCTTTGAGTGGATGTGTA 57.442 40.909 0.00 0.00 0.00 2.90
2716 3062 3.930336 TGAGCTTTGAGTGGATGTGTAG 58.070 45.455 0.00 0.00 0.00 2.74
2717 3063 3.324846 TGAGCTTTGAGTGGATGTGTAGT 59.675 43.478 0.00 0.00 0.00 2.73
2718 3064 4.202357 TGAGCTTTGAGTGGATGTGTAGTT 60.202 41.667 0.00 0.00 0.00 2.24
2719 3065 4.718961 AGCTTTGAGTGGATGTGTAGTTT 58.281 39.130 0.00 0.00 0.00 2.66
2720 3066 4.757149 AGCTTTGAGTGGATGTGTAGTTTC 59.243 41.667 0.00 0.00 0.00 2.78
2721 3067 4.083271 GCTTTGAGTGGATGTGTAGTTTCC 60.083 45.833 0.00 0.00 0.00 3.13
2722 3068 4.974645 TTGAGTGGATGTGTAGTTTCCT 57.025 40.909 0.00 0.00 0.00 3.36
2723 3069 6.428083 TTTGAGTGGATGTGTAGTTTCCTA 57.572 37.500 0.00 0.00 0.00 2.94
2724 3070 5.401531 TGAGTGGATGTGTAGTTTCCTAC 57.598 43.478 0.00 0.00 43.30 3.18
2736 3082 6.930667 GTAGTTTCCTACAAAAACACAGGA 57.069 37.500 2.05 0.00 42.66 3.86
2737 3083 7.324354 GTAGTTTCCTACAAAAACACAGGAA 57.676 36.000 0.00 0.00 43.70 3.36
2741 3087 7.411486 TTTCCTACAAAAACACAGGAAATGA 57.589 32.000 9.92 0.00 46.92 2.57
2742 3088 6.633500 TCCTACAAAAACACAGGAAATGAG 57.367 37.500 0.00 0.00 34.25 2.90
2743 3089 6.126409 TCCTACAAAAACACAGGAAATGAGT 58.874 36.000 0.00 0.00 34.25 3.41
2744 3090 7.284074 TCCTACAAAAACACAGGAAATGAGTA 58.716 34.615 0.00 0.00 34.25 2.59
2745 3091 7.444183 TCCTACAAAAACACAGGAAATGAGTAG 59.556 37.037 0.00 0.00 34.25 2.57
2746 3092 7.228706 CCTACAAAAACACAGGAAATGAGTAGT 59.771 37.037 0.00 0.00 31.90 2.73
2747 3093 9.268268 CTACAAAAACACAGGAAATGAGTAGTA 57.732 33.333 0.00 0.00 31.90 1.82
2748 3094 8.691661 ACAAAAACACAGGAAATGAGTAGTAT 57.308 30.769 0.00 0.00 31.90 2.12
2749 3095 9.131791 ACAAAAACACAGGAAATGAGTAGTATT 57.868 29.630 0.00 0.00 31.90 1.89
2750 3096 9.612620 CAAAAACACAGGAAATGAGTAGTATTC 57.387 33.333 0.00 0.00 31.90 1.75
2751 3097 7.923414 AAACACAGGAAATGAGTAGTATTCC 57.077 36.000 0.00 0.00 41.32 3.01
2756 3102 8.642432 CACAGGAAATGAGTAGTATTCCTATGA 58.358 37.037 5.92 0.00 45.16 2.15
2765 3111 9.213777 TGAGTAGTATTCCTATGAAATTCCTGT 57.786 33.333 0.00 0.00 33.32 4.00
2768 3114 9.408069 GTAGTATTCCTATGAAATTCCTGTACG 57.592 37.037 0.00 0.00 33.32 3.67
2769 3115 6.929606 AGTATTCCTATGAAATTCCTGTACGC 59.070 38.462 0.00 0.00 33.32 4.42
2770 3116 4.746535 TCCTATGAAATTCCTGTACGCA 57.253 40.909 0.00 0.00 0.00 5.24
2771 3117 5.290493 TCCTATGAAATTCCTGTACGCAT 57.710 39.130 0.00 0.00 0.00 4.73
2772 3118 5.680619 TCCTATGAAATTCCTGTACGCATT 58.319 37.500 0.00 0.00 0.00 3.56
2773 3119 6.119536 TCCTATGAAATTCCTGTACGCATTT 58.880 36.000 0.00 0.00 0.00 2.32
2774 3120 6.260050 TCCTATGAAATTCCTGTACGCATTTC 59.740 38.462 9.99 9.99 36.54 2.17
2775 3121 4.695217 TGAAATTCCTGTACGCATTTCC 57.305 40.909 12.61 1.95 35.58 3.13
2776 3122 4.331968 TGAAATTCCTGTACGCATTTCCT 58.668 39.130 12.61 0.00 35.58 3.36
2777 3123 5.492895 TGAAATTCCTGTACGCATTTCCTA 58.507 37.500 12.61 0.00 35.58 2.94
2778 3124 5.353123 TGAAATTCCTGTACGCATTTCCTAC 59.647 40.000 12.61 0.00 35.58 3.18
2779 3125 3.965379 TTCCTGTACGCATTTCCTACA 57.035 42.857 0.00 0.00 0.00 2.74
2780 3126 3.965379 TCCTGTACGCATTTCCTACAA 57.035 42.857 0.00 0.00 0.00 2.41
2781 3127 4.274602 TCCTGTACGCATTTCCTACAAA 57.725 40.909 0.00 0.00 0.00 2.83
2782 3128 3.998341 TCCTGTACGCATTTCCTACAAAC 59.002 43.478 0.00 0.00 0.00 2.93
2783 3129 3.126343 CCTGTACGCATTTCCTACAAACC 59.874 47.826 0.00 0.00 0.00 3.27
2784 3130 2.737783 TGTACGCATTTCCTACAAACCG 59.262 45.455 0.00 0.00 0.00 4.44
2785 3131 2.172851 ACGCATTTCCTACAAACCGA 57.827 45.000 0.00 0.00 0.00 4.69
2786 3132 2.496111 ACGCATTTCCTACAAACCGAA 58.504 42.857 0.00 0.00 0.00 4.30
2787 3133 3.078837 ACGCATTTCCTACAAACCGAAT 58.921 40.909 0.00 0.00 0.00 3.34
2788 3134 3.119990 ACGCATTTCCTACAAACCGAATG 60.120 43.478 0.00 0.00 0.00 2.67
2789 3135 3.179048 GCATTTCCTACAAACCGAATGC 58.821 45.455 3.51 3.51 41.43 3.56
2790 3136 3.366883 GCATTTCCTACAAACCGAATGCA 60.367 43.478 12.42 0.00 45.14 3.96
2791 3137 4.677779 GCATTTCCTACAAACCGAATGCAT 60.678 41.667 12.42 0.00 45.14 3.96
2792 3138 5.449862 GCATTTCCTACAAACCGAATGCATA 60.450 40.000 0.00 0.00 45.14 3.14
2793 3139 6.735694 GCATTTCCTACAAACCGAATGCATAT 60.736 38.462 0.00 0.00 45.14 1.78
2794 3140 7.521423 GCATTTCCTACAAACCGAATGCATATA 60.521 37.037 0.00 0.00 45.14 0.86
2795 3141 8.514594 CATTTCCTACAAACCGAATGCATATAT 58.485 33.333 0.00 0.00 0.00 0.86
2796 3142 9.733556 ATTTCCTACAAACCGAATGCATATATA 57.266 29.630 0.00 0.00 0.00 0.86
2797 3143 8.771920 TTCCTACAAACCGAATGCATATATAG 57.228 34.615 0.00 0.00 0.00 1.31
2798 3144 7.327975 TCCTACAAACCGAATGCATATATAGG 58.672 38.462 0.00 1.89 0.00 2.57
2799 3145 7.179516 TCCTACAAACCGAATGCATATATAGGA 59.820 37.037 0.00 6.03 32.78 2.94
2800 3146 7.822334 CCTACAAACCGAATGCATATATAGGAA 59.178 37.037 0.00 0.00 0.00 3.36
2801 3147 9.214957 CTACAAACCGAATGCATATATAGGAAA 57.785 33.333 0.00 0.00 0.00 3.13
2802 3148 8.458573 ACAAACCGAATGCATATATAGGAAAA 57.541 30.769 0.00 0.00 0.00 2.29
2803 3149 9.077885 ACAAACCGAATGCATATATAGGAAAAT 57.922 29.630 0.00 0.00 0.00 1.82
2804 3150 9.912634 CAAACCGAATGCATATATAGGAAAATT 57.087 29.630 0.00 0.00 0.00 1.82
2820 3166 5.970592 GGAAAATTTCCTCTGGAATCCTTG 58.029 41.667 17.01 0.00 46.57 3.61
2821 3167 5.481824 GGAAAATTTCCTCTGGAATCCTTGT 59.518 40.000 17.01 0.00 46.57 3.16
2822 3168 6.014242 GGAAAATTTCCTCTGGAATCCTTGTT 60.014 38.462 17.01 0.00 46.57 2.83
2823 3169 6.596309 AAATTTCCTCTGGAATCCTTGTTC 57.404 37.500 0.00 0.00 41.71 3.18
2824 3170 5.527026 ATTTCCTCTGGAATCCTTGTTCT 57.473 39.130 0.00 0.00 41.71 3.01
2825 3171 4.559862 TTCCTCTGGAATCCTTGTTCTC 57.440 45.455 0.00 0.00 36.71 2.87
2826 3172 3.520696 TCCTCTGGAATCCTTGTTCTCA 58.479 45.455 0.00 0.00 0.00 3.27
2827 3173 4.107072 TCCTCTGGAATCCTTGTTCTCAT 58.893 43.478 0.00 0.00 0.00 2.90
2828 3174 4.080695 TCCTCTGGAATCCTTGTTCTCATG 60.081 45.833 0.00 0.00 0.00 3.07
2829 3175 4.324099 CCTCTGGAATCCTTGTTCTCATGT 60.324 45.833 0.00 0.00 0.00 3.21
2830 3176 5.246981 TCTGGAATCCTTGTTCTCATGTT 57.753 39.130 0.00 0.00 0.00 2.71
2831 3177 5.634118 TCTGGAATCCTTGTTCTCATGTTT 58.366 37.500 0.00 0.00 0.00 2.83
2832 3178 6.070656 TCTGGAATCCTTGTTCTCATGTTTT 58.929 36.000 0.00 0.00 0.00 2.43
2833 3179 6.550854 TCTGGAATCCTTGTTCTCATGTTTTT 59.449 34.615 0.00 0.00 0.00 1.94
2834 3180 6.748132 TGGAATCCTTGTTCTCATGTTTTTC 58.252 36.000 0.00 0.00 0.00 2.29
2835 3181 6.159293 GGAATCCTTGTTCTCATGTTTTTCC 58.841 40.000 0.00 0.00 0.00 3.13
2836 3182 6.015095 GGAATCCTTGTTCTCATGTTTTTCCT 60.015 38.462 0.00 0.00 0.00 3.36
2837 3183 7.176690 GGAATCCTTGTTCTCATGTTTTTCCTA 59.823 37.037 0.00 0.00 0.00 2.94
2838 3184 6.877611 TCCTTGTTCTCATGTTTTTCCTAC 57.122 37.500 0.00 0.00 0.00 3.18
2839 3185 6.361433 TCCTTGTTCTCATGTTTTTCCTACA 58.639 36.000 0.00 0.00 0.00 2.74
2840 3186 6.831353 TCCTTGTTCTCATGTTTTTCCTACAA 59.169 34.615 0.00 0.00 0.00 2.41
2841 3187 7.340743 TCCTTGTTCTCATGTTTTTCCTACAAA 59.659 33.333 0.00 0.00 0.00 2.83
2842 3188 7.978975 CCTTGTTCTCATGTTTTTCCTACAAAA 59.021 33.333 0.00 0.00 0.00 2.44
2843 3189 9.364989 CTTGTTCTCATGTTTTTCCTACAAAAA 57.635 29.630 0.00 0.00 0.00 1.94
2844 3190 9.883142 TTGTTCTCATGTTTTTCCTACAAAAAT 57.117 25.926 0.00 0.00 32.55 1.82
2845 3191 9.528018 TGTTCTCATGTTTTTCCTACAAAAATC 57.472 29.630 0.00 0.00 32.55 2.17
2846 3192 8.978539 GTTCTCATGTTTTTCCTACAAAAATCC 58.021 33.333 0.00 0.00 32.55 3.01
2847 3193 8.477419 TCTCATGTTTTTCCTACAAAAATCCT 57.523 30.769 0.00 0.00 32.55 3.24
2848 3194 8.923270 TCTCATGTTTTTCCTACAAAAATCCTT 58.077 29.630 0.00 0.00 32.55 3.36
2849 3195 9.196552 CTCATGTTTTTCCTACAAAAATCCTTC 57.803 33.333 0.00 0.00 32.55 3.46
2850 3196 8.700051 TCATGTTTTTCCTACAAAAATCCTTCA 58.300 29.630 0.00 0.00 32.55 3.02
2851 3197 9.323985 CATGTTTTTCCTACAAAAATCCTTCAA 57.676 29.630 0.00 0.00 32.55 2.69
2852 3198 9.898152 ATGTTTTTCCTACAAAAATCCTTCAAA 57.102 25.926 0.00 0.00 32.55 2.69
2853 3199 9.157104 TGTTTTTCCTACAAAAATCCTTCAAAC 57.843 29.630 0.00 0.00 32.55 2.93
2854 3200 8.609176 GTTTTTCCTACAAAAATCCTTCAAACC 58.391 33.333 0.00 0.00 32.55 3.27
2855 3201 5.699097 TCCTACAAAAATCCTTCAAACCG 57.301 39.130 0.00 0.00 0.00 4.44
2856 3202 5.378332 TCCTACAAAAATCCTTCAAACCGA 58.622 37.500 0.00 0.00 0.00 4.69
2857 3203 5.828859 TCCTACAAAAATCCTTCAAACCGAA 59.171 36.000 0.00 0.00 0.00 4.30
2858 3204 6.492087 TCCTACAAAAATCCTTCAAACCGAAT 59.508 34.615 0.00 0.00 31.69 3.34
2859 3205 6.586082 CCTACAAAAATCCTTCAAACCGAATG 59.414 38.462 0.00 0.00 31.69 2.67
2860 3206 6.155475 ACAAAAATCCTTCAAACCGAATGA 57.845 33.333 0.00 0.00 33.47 2.57
2861 3207 6.215845 ACAAAAATCCTTCAAACCGAATGAG 58.784 36.000 0.00 0.00 32.60 2.90
2862 3208 5.391312 AAAATCCTTCAAACCGAATGAGG 57.609 39.130 0.00 0.00 32.60 3.86
2863 3209 1.821216 TCCTTCAAACCGAATGAGGC 58.179 50.000 0.00 0.00 31.69 4.70
2864 3210 0.811281 CCTTCAAACCGAATGAGGCC 59.189 55.000 0.00 0.00 31.69 5.19
2887 3233 6.741801 GCCTGAGAGGAACAATAATACCTACC 60.742 46.154 0.00 0.00 37.67 3.18
2926 3562 0.110373 GCGCCTAACCAAAACGACTG 60.110 55.000 0.00 0.00 0.00 3.51
2928 3564 0.240145 GCCTAACCAAAACGACTGCC 59.760 55.000 0.00 0.00 0.00 4.85
2992 3628 5.746245 CGAGATAAATCAGTCACTCAGAACC 59.254 44.000 0.00 0.00 0.00 3.62
2999 3635 4.843728 TCAGTCACTCAGAACCAAAAAGT 58.156 39.130 0.00 0.00 0.00 2.66
3087 3724 5.750524 TGCTTTTTACATAGGCTGATGGTA 58.249 37.500 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.333528 TCTAGAGTGTCTTTGCAAAATTGTT 57.666 32.000 13.84 0.00 0.00 2.83
61 63 6.942532 AGATGATGAGTCTTCTAGAGTGTC 57.057 41.667 7.48 0.00 37.17 3.67
75 77 3.501828 ACGATCCTCGAGAAGATGATGAG 59.498 47.826 15.71 6.58 43.74 2.90
131 133 0.318699 CCGTGTGTGTGTCGAGACAT 60.319 55.000 19.18 0.00 43.97 3.06
132 134 1.065109 CCGTGTGTGTGTCGAGACA 59.935 57.895 11.94 11.94 39.32 3.41
161 167 2.419021 CGATCCATTGGGCATGCTTTTT 60.419 45.455 18.92 0.00 0.00 1.94
166 172 1.799258 GACCGATCCATTGGGCATGC 61.799 60.000 9.90 9.90 39.36 4.06
219 225 9.079833 CAGGCATCACAAACATTAGATAAAAAG 57.920 33.333 0.00 0.00 0.00 2.27
225 231 3.065786 CGCAGGCATCACAAACATTAGAT 59.934 43.478 0.00 0.00 0.00 1.98
323 331 0.557238 ATGATGCTATGGGCCCAACA 59.443 50.000 32.58 26.98 40.92 3.33
484 591 5.885230 TCTGCTAATCATGTCCAACTTTG 57.115 39.130 0.00 0.00 0.00 2.77
489 596 8.023021 ACTATAGTTCTGCTAATCATGTCCAA 57.977 34.615 0.00 0.00 32.72 3.53
505 612 8.758633 TTGCAAGAAAGTCTGTACTATAGTTC 57.241 34.615 11.40 6.63 33.75 3.01
662 785 2.170397 TCACATATTGGCGGTGATCACT 59.830 45.455 24.50 7.02 36.69 3.41
833 962 0.179137 GGCAGGCCAATAAGCGAAAC 60.179 55.000 5.01 0.00 35.81 2.78
1187 1344 0.396435 CGGAACATATAGGCTGGGCA 59.604 55.000 0.00 0.00 0.00 5.36
1193 1350 3.130516 TCGGATGATCGGAACATATAGGC 59.869 47.826 0.33 0.00 0.00 3.93
1194 1351 4.983671 TCGGATGATCGGAACATATAGG 57.016 45.455 0.33 0.00 0.00 2.57
1195 1352 5.974158 GTCATCGGATGATCGGAACATATAG 59.026 44.000 22.45 0.00 42.04 1.31
1196 1353 5.652452 AGTCATCGGATGATCGGAACATATA 59.348 40.000 22.45 0.00 42.04 0.86
1197 1354 4.464244 AGTCATCGGATGATCGGAACATAT 59.536 41.667 22.45 0.00 42.04 1.78
1198 1355 3.826729 AGTCATCGGATGATCGGAACATA 59.173 43.478 22.45 0.00 42.04 2.29
1199 1356 2.630098 AGTCATCGGATGATCGGAACAT 59.370 45.455 22.45 0.00 42.04 2.71
1200 1357 2.031870 AGTCATCGGATGATCGGAACA 58.968 47.619 22.45 0.00 42.04 3.18
1201 1358 2.398498 CAGTCATCGGATGATCGGAAC 58.602 52.381 22.45 10.04 42.04 3.62
1202 1359 1.269778 GCAGTCATCGGATGATCGGAA 60.270 52.381 22.45 0.00 42.04 4.30
1203 1360 0.315251 GCAGTCATCGGATGATCGGA 59.685 55.000 22.45 5.14 42.04 4.55
1204 1361 1.005804 CGCAGTCATCGGATGATCGG 61.006 60.000 22.45 16.53 42.04 4.18
1205 1362 1.612469 GCGCAGTCATCGGATGATCG 61.612 60.000 22.45 23.04 42.04 3.69
1206 1363 0.598419 TGCGCAGTCATCGGATGATC 60.598 55.000 22.45 15.68 42.04 2.92
1220 1381 1.067776 TGATGCATGAAAATGTGCGCA 60.068 42.857 5.66 5.66 44.11 6.09
1253 1427 3.777478 TCTAGTATAAGTTGGCACACGC 58.223 45.455 0.00 0.00 39.29 5.34
1254 1428 6.903883 ATTTCTAGTATAAGTTGGCACACG 57.096 37.500 0.00 0.00 39.29 4.49
1257 1431 9.057089 AGCATTATTTCTAGTATAAGTTGGCAC 57.943 33.333 0.00 0.00 0.00 5.01
1259 1433 9.273016 TCAGCATTATTTCTAGTATAAGTTGGC 57.727 33.333 0.00 0.00 0.00 4.52
1274 1544 6.204852 TCCATGGGTAGATCAGCATTATTT 57.795 37.500 13.02 0.00 0.00 1.40
1293 1563 2.559668 CGCCTGCAAATCCATTATCCAT 59.440 45.455 0.00 0.00 0.00 3.41
1294 1564 1.955778 CGCCTGCAAATCCATTATCCA 59.044 47.619 0.00 0.00 0.00 3.41
1295 1565 1.270550 CCGCCTGCAAATCCATTATCC 59.729 52.381 0.00 0.00 0.00 2.59
1296 1566 1.956477 ACCGCCTGCAAATCCATTATC 59.044 47.619 0.00 0.00 0.00 1.75
1297 1567 1.682854 CACCGCCTGCAAATCCATTAT 59.317 47.619 0.00 0.00 0.00 1.28
1298 1568 1.102154 CACCGCCTGCAAATCCATTA 58.898 50.000 0.00 0.00 0.00 1.90
1299 1569 1.892338 CACCGCCTGCAAATCCATT 59.108 52.632 0.00 0.00 0.00 3.16
1445 1771 0.673644 GGACATTGTCTGGTGTCGGG 60.674 60.000 16.02 0.00 44.32 5.14
1459 1785 6.404293 GCATGACCAACTAATTTAACGGACAT 60.404 38.462 0.00 0.00 30.74 3.06
1464 1790 6.176975 TGAGCATGACCAACTAATTTAACG 57.823 37.500 0.00 0.00 0.00 3.18
1482 1808 1.153524 ATGGTGGCAGGTTTGAGCA 59.846 52.632 0.00 0.00 0.00 4.26
1493 1819 0.320946 ATTTGCAAGCACATGGTGGC 60.321 50.000 3.40 3.40 42.54 5.01
1498 1824 6.757478 TGGATACATAAATTTGCAAGCACATG 59.243 34.615 0.00 5.53 46.17 3.21
1499 1825 6.876155 TGGATACATAAATTTGCAAGCACAT 58.124 32.000 0.00 0.00 46.17 3.21
1500 1826 6.278172 TGGATACATAAATTTGCAAGCACA 57.722 33.333 0.00 0.00 46.17 4.57
1526 1852 3.007635 CAAATTAGAGGTCAACGTCCCC 58.992 50.000 0.00 0.00 0.00 4.81
1527 1853 2.418976 GCAAATTAGAGGTCAACGTCCC 59.581 50.000 0.00 0.00 0.00 4.46
2036 2369 0.680921 CCGGGATGACATTGTTGGCT 60.681 55.000 0.00 0.00 0.00 4.75
2087 2420 6.128117 GCCAAAATCAATAGAACTGGACGTTA 60.128 38.462 0.00 0.00 35.56 3.18
2120 2453 1.078918 CGGAGAAGCATGCACCTGA 60.079 57.895 21.98 0.00 0.00 3.86
2122 2455 1.078848 GTCGGAGAAGCATGCACCT 60.079 57.895 21.98 15.88 39.69 4.00
2123 2456 2.456119 CGTCGGAGAAGCATGCACC 61.456 63.158 21.98 15.58 39.69 5.01
2125 2458 1.960040 ATCCGTCGGAGAAGCATGCA 61.960 55.000 21.98 0.00 39.69 3.96
2126 2459 0.811616 AATCCGTCGGAGAAGCATGC 60.812 55.000 20.50 10.51 39.69 4.06
2127 2460 1.212616 GAATCCGTCGGAGAAGCATG 58.787 55.000 20.50 0.00 39.69 4.06
2128 2461 0.105039 GGAATCCGTCGGAGAAGCAT 59.895 55.000 20.50 0.00 39.69 3.79
2198 2535 8.853077 TTCAAGTTCTTATCACTCACAATGAT 57.147 30.769 0.00 0.00 40.02 2.45
2252 2597 7.664318 TGACTCTTTAAGAAATTACCAGTTCCC 59.336 37.037 0.00 0.00 0.00 3.97
2288 2633 5.187186 CCTTAAGACCAAGTTCTAGCACCTA 59.813 44.000 3.36 0.00 0.00 3.08
2289 2634 4.020128 CCTTAAGACCAAGTTCTAGCACCT 60.020 45.833 3.36 0.00 0.00 4.00
2291 2636 4.254492 CCCTTAAGACCAAGTTCTAGCAC 58.746 47.826 3.36 0.00 0.00 4.40
2325 2670 6.600032 ACTTCAATGTACACCACAAGTTGTAA 59.400 34.615 8.49 0.00 41.55 2.41
2407 2752 1.672030 CACCTCATCAGTGGCGCAA 60.672 57.895 10.83 0.00 31.50 4.85
2436 2781 3.177884 TGACAGCTGGCCCCAAGT 61.178 61.111 19.23 0.00 0.00 3.16
2495 2841 8.487313 AAATAAAACCGAAGCTTTCTTTTTGT 57.513 26.923 16.88 11.01 31.48 2.83
2570 2916 3.278574 CCGAATGAGCCCTCAATGTAAA 58.721 45.455 1.62 0.00 43.58 2.01
2577 2923 0.322456 CCAAACCGAATGAGCCCTCA 60.322 55.000 0.00 0.00 44.59 3.86
2578 2924 0.035439 TCCAAACCGAATGAGCCCTC 60.035 55.000 0.00 0.00 0.00 4.30
2579 2925 0.035056 CTCCAAACCGAATGAGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
2580 2926 1.032114 CCTCCAAACCGAATGAGCCC 61.032 60.000 0.00 0.00 0.00 5.19
2581 2927 0.035439 TCCTCCAAACCGAATGAGCC 60.035 55.000 0.00 0.00 0.00 4.70
2582 2928 1.821216 TTCCTCCAAACCGAATGAGC 58.179 50.000 0.00 0.00 0.00 4.26
2583 2929 4.009675 TGATTTCCTCCAAACCGAATGAG 58.990 43.478 0.00 0.00 0.00 2.90
2584 2930 4.027674 TGATTTCCTCCAAACCGAATGA 57.972 40.909 0.00 0.00 0.00 2.57
2585 2931 4.782019 TTGATTTCCTCCAAACCGAATG 57.218 40.909 0.00 0.00 0.00 2.67
2586 2932 5.538118 GTTTTGATTTCCTCCAAACCGAAT 58.462 37.500 0.00 0.00 34.81 3.34
2587 2933 4.498345 CGTTTTGATTTCCTCCAAACCGAA 60.498 41.667 0.00 0.00 39.44 4.30
2588 2934 3.003897 CGTTTTGATTTCCTCCAAACCGA 59.996 43.478 0.00 0.00 39.44 4.69
2589 2935 3.243267 ACGTTTTGATTTCCTCCAAACCG 60.243 43.478 0.00 0.00 41.64 4.44
2590 2936 4.316205 ACGTTTTGATTTCCTCCAAACC 57.684 40.909 0.00 0.00 36.58 3.27
2591 2937 5.239963 TCCTACGTTTTGATTTCCTCCAAAC 59.760 40.000 0.00 0.00 36.58 2.93
2592 2938 5.378332 TCCTACGTTTTGATTTCCTCCAAA 58.622 37.500 0.00 0.00 0.00 3.28
2593 2939 4.975631 TCCTACGTTTTGATTTCCTCCAA 58.024 39.130 0.00 0.00 0.00 3.53
2594 2940 4.627284 TCCTACGTTTTGATTTCCTCCA 57.373 40.909 0.00 0.00 0.00 3.86
2595 2941 6.510879 AATTCCTACGTTTTGATTTCCTCC 57.489 37.500 0.00 0.00 0.00 4.30
2596 2942 8.488651 TCTAATTCCTACGTTTTGATTTCCTC 57.511 34.615 0.00 0.00 0.00 3.71
2597 2943 8.857694 TTCTAATTCCTACGTTTTGATTTCCT 57.142 30.769 0.00 0.00 0.00 3.36
2598 2944 8.727910 ACTTCTAATTCCTACGTTTTGATTTCC 58.272 33.333 0.00 0.00 0.00 3.13
2601 2947 9.939802 ACTACTTCTAATTCCTACGTTTTGATT 57.060 29.630 0.00 0.00 0.00 2.57
2622 2968 8.763601 GCCATCCTATCAAATTCCTATACTACT 58.236 37.037 0.00 0.00 0.00 2.57
2623 2969 8.540388 TGCCATCCTATCAAATTCCTATACTAC 58.460 37.037 0.00 0.00 0.00 2.73
2624 2970 8.540388 GTGCCATCCTATCAAATTCCTATACTA 58.460 37.037 0.00 0.00 0.00 1.82
2625 2971 7.238514 AGTGCCATCCTATCAAATTCCTATACT 59.761 37.037 0.00 0.00 0.00 2.12
2626 2972 7.398024 AGTGCCATCCTATCAAATTCCTATAC 58.602 38.462 0.00 0.00 0.00 1.47
2627 2973 7.574021 AGTGCCATCCTATCAAATTCCTATA 57.426 36.000 0.00 0.00 0.00 1.31
2628 2974 6.460103 AGTGCCATCCTATCAAATTCCTAT 57.540 37.500 0.00 0.00 0.00 2.57
2629 2975 5.912149 AGTGCCATCCTATCAAATTCCTA 57.088 39.130 0.00 0.00 0.00 2.94
2630 2976 4.803329 AGTGCCATCCTATCAAATTCCT 57.197 40.909 0.00 0.00 0.00 3.36
2631 2977 4.500375 GCAAGTGCCATCCTATCAAATTCC 60.500 45.833 0.00 0.00 34.31 3.01
2632 2978 4.614946 GCAAGTGCCATCCTATCAAATTC 58.385 43.478 0.00 0.00 34.31 2.17
2633 2979 4.660789 GCAAGTGCCATCCTATCAAATT 57.339 40.909 0.00 0.00 34.31 1.82
2647 2993 5.979517 GTCAATTTTATAGGATGGCAAGTGC 59.020 40.000 0.00 0.00 41.14 4.40
2648 2994 7.338800 AGTCAATTTTATAGGATGGCAAGTG 57.661 36.000 0.00 0.00 0.00 3.16
2649 2995 7.961326 AAGTCAATTTTATAGGATGGCAAGT 57.039 32.000 0.00 0.00 0.00 3.16
2650 2996 8.352942 GGTAAGTCAATTTTATAGGATGGCAAG 58.647 37.037 0.00 0.00 0.00 4.01
2651 2997 8.058847 AGGTAAGTCAATTTTATAGGATGGCAA 58.941 33.333 0.00 0.00 0.00 4.52
2652 2998 7.582719 AGGTAAGTCAATTTTATAGGATGGCA 58.417 34.615 0.00 0.00 0.00 4.92
2653 2999 7.095187 CGAGGTAAGTCAATTTTATAGGATGGC 60.095 40.741 0.00 0.00 0.00 4.40
2654 3000 7.931948 ACGAGGTAAGTCAATTTTATAGGATGG 59.068 37.037 0.00 0.00 0.00 3.51
2655 3001 8.888579 ACGAGGTAAGTCAATTTTATAGGATG 57.111 34.615 0.00 0.00 0.00 3.51
2656 3002 9.543783 GAACGAGGTAAGTCAATTTTATAGGAT 57.456 33.333 0.00 0.00 0.00 3.24
2657 3003 7.983484 GGAACGAGGTAAGTCAATTTTATAGGA 59.017 37.037 0.00 0.00 0.00 2.94
2658 3004 7.985752 AGGAACGAGGTAAGTCAATTTTATAGG 59.014 37.037 0.00 0.00 0.00 2.57
2659 3005 8.943909 AGGAACGAGGTAAGTCAATTTTATAG 57.056 34.615 0.00 0.00 0.00 1.31
2660 3006 9.807649 GTAGGAACGAGGTAAGTCAATTTTATA 57.192 33.333 0.00 0.00 0.00 0.98
2661 3007 8.713737 GTAGGAACGAGGTAAGTCAATTTTAT 57.286 34.615 0.00 0.00 0.00 1.40
2679 3025 2.928116 AGCTCATTTTACGCGTAGGAAC 59.072 45.455 19.61 10.91 0.00 3.62
2680 3026 3.241067 AGCTCATTTTACGCGTAGGAA 57.759 42.857 19.61 17.60 0.00 3.36
2681 3027 2.953466 AGCTCATTTTACGCGTAGGA 57.047 45.000 19.61 12.24 0.00 2.94
2682 3028 3.369756 TCAAAGCTCATTTTACGCGTAGG 59.630 43.478 19.61 10.54 0.00 3.18
2683 3029 4.091509 ACTCAAAGCTCATTTTACGCGTAG 59.908 41.667 19.61 9.64 0.00 3.51
2684 3030 3.991773 ACTCAAAGCTCATTTTACGCGTA 59.008 39.130 16.41 16.41 0.00 4.42
2685 3031 2.806244 ACTCAAAGCTCATTTTACGCGT 59.194 40.909 19.17 19.17 0.00 6.01
2686 3032 3.155998 CACTCAAAGCTCATTTTACGCG 58.844 45.455 3.53 3.53 0.00 6.01
2687 3033 3.188460 TCCACTCAAAGCTCATTTTACGC 59.812 43.478 0.00 0.00 0.00 4.42
2688 3034 5.106555 ACATCCACTCAAAGCTCATTTTACG 60.107 40.000 0.00 0.00 0.00 3.18
2689 3035 6.088824 CACATCCACTCAAAGCTCATTTTAC 58.911 40.000 0.00 0.00 0.00 2.01
2690 3036 5.769662 ACACATCCACTCAAAGCTCATTTTA 59.230 36.000 0.00 0.00 0.00 1.52
2691 3037 4.586001 ACACATCCACTCAAAGCTCATTTT 59.414 37.500 0.00 0.00 0.00 1.82
2692 3038 4.147321 ACACATCCACTCAAAGCTCATTT 58.853 39.130 0.00 0.00 0.00 2.32
2693 3039 3.759581 ACACATCCACTCAAAGCTCATT 58.240 40.909 0.00 0.00 0.00 2.57
2694 3040 3.430042 ACACATCCACTCAAAGCTCAT 57.570 42.857 0.00 0.00 0.00 2.90
2695 3041 2.936919 ACACATCCACTCAAAGCTCA 57.063 45.000 0.00 0.00 0.00 4.26
2696 3042 3.931578 ACTACACATCCACTCAAAGCTC 58.068 45.455 0.00 0.00 0.00 4.09
2697 3043 4.357918 AACTACACATCCACTCAAAGCT 57.642 40.909 0.00 0.00 0.00 3.74
2698 3044 4.083271 GGAAACTACACATCCACTCAAAGC 60.083 45.833 0.00 0.00 33.30 3.51
2699 3045 5.308825 AGGAAACTACACATCCACTCAAAG 58.691 41.667 0.00 0.00 40.61 2.77
2700 3046 5.304686 AGGAAACTACACATCCACTCAAA 57.695 39.130 0.00 0.00 40.61 2.69
2701 3047 4.974645 AGGAAACTACACATCCACTCAA 57.025 40.909 0.00 0.00 40.61 3.02
2718 3064 6.605594 ACTCATTTCCTGTGTTTTTGTAGGAA 59.394 34.615 0.00 0.00 45.04 3.36
2719 3065 6.126409 ACTCATTTCCTGTGTTTTTGTAGGA 58.874 36.000 0.00 0.00 37.55 2.94
2720 3066 6.391227 ACTCATTTCCTGTGTTTTTGTAGG 57.609 37.500 0.00 0.00 0.00 3.18
2721 3067 8.154649 ACTACTCATTTCCTGTGTTTTTGTAG 57.845 34.615 0.00 0.00 33.75 2.74
2722 3068 9.787435 ATACTACTCATTTCCTGTGTTTTTGTA 57.213 29.630 0.00 0.00 33.75 2.41
2723 3069 8.691661 ATACTACTCATTTCCTGTGTTTTTGT 57.308 30.769 0.00 0.00 33.75 2.83
2724 3070 9.612620 GAATACTACTCATTTCCTGTGTTTTTG 57.387 33.333 0.00 0.00 33.75 2.44
2725 3071 8.793592 GGAATACTACTCATTTCCTGTGTTTTT 58.206 33.333 0.00 0.00 35.74 1.94
2726 3072 8.164070 AGGAATACTACTCATTTCCTGTGTTTT 58.836 33.333 2.40 0.00 44.80 2.43
2727 3073 7.690256 AGGAATACTACTCATTTCCTGTGTTT 58.310 34.615 2.40 0.00 44.80 2.83
2728 3074 7.259088 AGGAATACTACTCATTTCCTGTGTT 57.741 36.000 2.40 0.00 44.80 3.32
2729 3075 6.875972 AGGAATACTACTCATTTCCTGTGT 57.124 37.500 2.40 0.00 44.80 3.72
2730 3076 8.824159 CATAGGAATACTACTCATTTCCTGTG 57.176 38.462 12.19 11.71 45.74 3.66
2731 3077 8.783660 TCATAGGAATACTACTCATTTCCTGT 57.216 34.615 12.19 4.03 45.74 4.00
2739 3085 9.213777 ACAGGAATTTCATAGGAATACTACTCA 57.786 33.333 0.00 0.00 33.70 3.41
2742 3088 9.408069 CGTACAGGAATTTCATAGGAATACTAC 57.592 37.037 0.00 0.00 33.70 2.73
2743 3089 8.086522 GCGTACAGGAATTTCATAGGAATACTA 58.913 37.037 0.00 0.00 35.80 1.82
2744 3090 6.929606 GCGTACAGGAATTTCATAGGAATACT 59.070 38.462 0.00 0.00 31.93 2.12
2745 3091 6.704493 TGCGTACAGGAATTTCATAGGAATAC 59.296 38.462 0.00 0.00 31.93 1.89
2746 3092 6.822442 TGCGTACAGGAATTTCATAGGAATA 58.178 36.000 0.00 0.00 31.93 1.75
2747 3093 5.680619 TGCGTACAGGAATTTCATAGGAAT 58.319 37.500 0.00 0.00 31.93 3.01
2748 3094 5.092554 TGCGTACAGGAATTTCATAGGAA 57.907 39.130 0.00 0.00 0.00 3.36
2749 3095 4.746535 TGCGTACAGGAATTTCATAGGA 57.253 40.909 0.00 0.00 0.00 2.94
2750 3096 6.377327 AAATGCGTACAGGAATTTCATAGG 57.623 37.500 0.00 0.00 0.00 2.57
2751 3097 6.260936 AGGAAATGCGTACAGGAATTTCATAG 59.739 38.462 14.32 0.00 31.71 2.23
2752 3098 6.119536 AGGAAATGCGTACAGGAATTTCATA 58.880 36.000 14.32 0.00 31.71 2.15
2753 3099 4.949856 AGGAAATGCGTACAGGAATTTCAT 59.050 37.500 14.32 7.06 31.71 2.57
2754 3100 4.331968 AGGAAATGCGTACAGGAATTTCA 58.668 39.130 14.32 0.00 31.71 2.69
2755 3101 4.965119 AGGAAATGCGTACAGGAATTTC 57.035 40.909 6.77 6.77 0.00 2.17
2756 3102 5.250200 TGTAGGAAATGCGTACAGGAATTT 58.750 37.500 0.00 0.00 41.47 1.82
2757 3103 4.839121 TGTAGGAAATGCGTACAGGAATT 58.161 39.130 0.00 0.00 41.47 2.17
2758 3104 4.481368 TGTAGGAAATGCGTACAGGAAT 57.519 40.909 0.00 0.00 41.47 3.01
2759 3105 3.965379 TGTAGGAAATGCGTACAGGAA 57.035 42.857 0.00 0.00 41.47 3.36
2760 3106 3.965379 TTGTAGGAAATGCGTACAGGA 57.035 42.857 0.00 0.00 45.41 3.86
2761 3107 3.126343 GGTTTGTAGGAAATGCGTACAGG 59.874 47.826 0.00 0.00 45.41 4.00
2762 3108 3.181524 CGGTTTGTAGGAAATGCGTACAG 60.182 47.826 0.00 0.00 45.41 2.74
2763 3109 2.737783 CGGTTTGTAGGAAATGCGTACA 59.262 45.455 0.00 0.00 43.79 2.90
2764 3110 2.995258 TCGGTTTGTAGGAAATGCGTAC 59.005 45.455 0.00 0.00 38.13 3.67
2765 3111 3.316071 TCGGTTTGTAGGAAATGCGTA 57.684 42.857 0.00 0.00 0.00 4.42
2766 3112 2.172851 TCGGTTTGTAGGAAATGCGT 57.827 45.000 0.00 0.00 0.00 5.24
2767 3113 3.425404 CATTCGGTTTGTAGGAAATGCG 58.575 45.455 0.00 0.00 0.00 4.73
2768 3114 3.179048 GCATTCGGTTTGTAGGAAATGC 58.821 45.455 0.00 0.00 0.00 3.56
2769 3115 4.433186 TGCATTCGGTTTGTAGGAAATG 57.567 40.909 0.00 0.00 0.00 2.32
2770 3116 6.959639 ATATGCATTCGGTTTGTAGGAAAT 57.040 33.333 3.54 0.00 0.00 2.17
2771 3117 9.214957 CTATATATGCATTCGGTTTGTAGGAAA 57.785 33.333 3.54 0.00 0.00 3.13
2772 3118 7.822334 CCTATATATGCATTCGGTTTGTAGGAA 59.178 37.037 3.54 0.00 0.00 3.36
2773 3119 7.179516 TCCTATATATGCATTCGGTTTGTAGGA 59.820 37.037 3.54 8.50 32.65 2.94
2774 3120 7.327975 TCCTATATATGCATTCGGTTTGTAGG 58.672 38.462 3.54 6.40 0.00 3.18
2775 3121 8.771920 TTCCTATATATGCATTCGGTTTGTAG 57.228 34.615 3.54 0.00 0.00 2.74
2776 3122 9.562408 TTTTCCTATATATGCATTCGGTTTGTA 57.438 29.630 3.54 0.00 0.00 2.41
2777 3123 8.458573 TTTTCCTATATATGCATTCGGTTTGT 57.541 30.769 3.54 0.00 0.00 2.83
2778 3124 9.912634 AATTTTCCTATATATGCATTCGGTTTG 57.087 29.630 3.54 0.00 0.00 2.93
2781 3127 8.739972 GGAAATTTTCCTATATATGCATTCGGT 58.260 33.333 19.01 0.00 46.57 4.69
2797 3143 5.481824 ACAAGGATTCCAGAGGAAATTTTCC 59.518 40.000 18.71 18.71 45.41 3.13
2798 3144 6.596309 ACAAGGATTCCAGAGGAAATTTTC 57.404 37.500 5.29 0.24 45.41 2.29
2799 3145 6.784473 AGAACAAGGATTCCAGAGGAAATTTT 59.216 34.615 5.29 0.00 45.41 1.82
2800 3146 6.318112 AGAACAAGGATTCCAGAGGAAATTT 58.682 36.000 5.29 0.00 45.41 1.82
2801 3147 5.896963 AGAACAAGGATTCCAGAGGAAATT 58.103 37.500 5.29 0.00 45.41 1.82
2802 3148 5.014544 TGAGAACAAGGATTCCAGAGGAAAT 59.985 40.000 5.29 0.00 45.41 2.17
2803 3149 4.350816 TGAGAACAAGGATTCCAGAGGAAA 59.649 41.667 5.29 0.00 45.41 3.13
2804 3150 3.909995 TGAGAACAAGGATTCCAGAGGAA 59.090 43.478 5.29 0.30 46.39 3.36
2805 3151 3.520696 TGAGAACAAGGATTCCAGAGGA 58.479 45.455 5.29 0.00 0.00 3.71
2806 3152 3.988976 TGAGAACAAGGATTCCAGAGG 57.011 47.619 5.29 0.00 0.00 3.69
2807 3153 4.841422 ACATGAGAACAAGGATTCCAGAG 58.159 43.478 5.29 0.00 0.00 3.35
2808 3154 4.916041 ACATGAGAACAAGGATTCCAGA 57.084 40.909 5.29 0.00 0.00 3.86
2809 3155 5.972107 AAACATGAGAACAAGGATTCCAG 57.028 39.130 5.29 0.00 0.00 3.86
2810 3156 6.239289 GGAAAAACATGAGAACAAGGATTCCA 60.239 38.462 5.29 0.00 0.00 3.53
2811 3157 6.015095 AGGAAAAACATGAGAACAAGGATTCC 60.015 38.462 0.00 0.00 0.00 3.01
2812 3158 6.986250 AGGAAAAACATGAGAACAAGGATTC 58.014 36.000 0.00 0.00 0.00 2.52
2813 3159 6.983906 AGGAAAAACATGAGAACAAGGATT 57.016 33.333 0.00 0.00 0.00 3.01
2814 3160 7.004086 TGTAGGAAAAACATGAGAACAAGGAT 58.996 34.615 0.00 0.00 0.00 3.24
2815 3161 6.361433 TGTAGGAAAAACATGAGAACAAGGA 58.639 36.000 0.00 0.00 0.00 3.36
2816 3162 6.633500 TGTAGGAAAAACATGAGAACAAGG 57.367 37.500 0.00 0.00 0.00 3.61
2817 3163 8.925161 TTTTGTAGGAAAAACATGAGAACAAG 57.075 30.769 0.00 0.00 0.00 3.16
2818 3164 9.883142 ATTTTTGTAGGAAAAACATGAGAACAA 57.117 25.926 0.00 0.00 32.75 2.83
2819 3165 9.528018 GATTTTTGTAGGAAAAACATGAGAACA 57.472 29.630 0.00 0.00 32.75 3.18
2820 3166 8.978539 GGATTTTTGTAGGAAAAACATGAGAAC 58.021 33.333 0.00 0.00 32.75 3.01
2821 3167 8.923270 AGGATTTTTGTAGGAAAAACATGAGAA 58.077 29.630 0.00 0.00 32.75 2.87
2822 3168 8.477419 AGGATTTTTGTAGGAAAAACATGAGA 57.523 30.769 0.00 0.00 32.75 3.27
2823 3169 9.196552 GAAGGATTTTTGTAGGAAAAACATGAG 57.803 33.333 0.00 0.00 32.75 2.90
2824 3170 8.700051 TGAAGGATTTTTGTAGGAAAAACATGA 58.300 29.630 0.00 0.00 32.75 3.07
2825 3171 8.885494 TGAAGGATTTTTGTAGGAAAAACATG 57.115 30.769 0.00 0.00 32.75 3.21
2826 3172 9.898152 TTTGAAGGATTTTTGTAGGAAAAACAT 57.102 25.926 0.00 0.00 32.75 2.71
2827 3173 9.157104 GTTTGAAGGATTTTTGTAGGAAAAACA 57.843 29.630 0.00 0.00 32.75 2.83
2828 3174 8.609176 GGTTTGAAGGATTTTTGTAGGAAAAAC 58.391 33.333 0.00 0.00 32.75 2.43
2829 3175 7.492994 CGGTTTGAAGGATTTTTGTAGGAAAAA 59.507 33.333 0.00 0.00 32.75 1.94
2830 3176 6.981559 CGGTTTGAAGGATTTTTGTAGGAAAA 59.018 34.615 0.00 0.00 33.46 2.29
2831 3177 6.321690 TCGGTTTGAAGGATTTTTGTAGGAAA 59.678 34.615 0.00 0.00 0.00 3.13
2832 3178 5.828859 TCGGTTTGAAGGATTTTTGTAGGAA 59.171 36.000 0.00 0.00 0.00 3.36
2833 3179 5.378332 TCGGTTTGAAGGATTTTTGTAGGA 58.622 37.500 0.00 0.00 0.00 2.94
2834 3180 5.699097 TCGGTTTGAAGGATTTTTGTAGG 57.301 39.130 0.00 0.00 0.00 3.18
2835 3181 7.367285 TCATTCGGTTTGAAGGATTTTTGTAG 58.633 34.615 0.00 0.00 42.08 2.74
2836 3182 7.278461 TCATTCGGTTTGAAGGATTTTTGTA 57.722 32.000 0.00 0.00 42.08 2.41
2837 3183 6.155475 TCATTCGGTTTGAAGGATTTTTGT 57.845 33.333 0.00 0.00 42.08 2.83
2838 3184 5.634859 CCTCATTCGGTTTGAAGGATTTTTG 59.365 40.000 0.00 0.00 45.46 2.44
2839 3185 5.783111 CCTCATTCGGTTTGAAGGATTTTT 58.217 37.500 0.00 0.00 45.46 1.94
2840 3186 4.321974 GCCTCATTCGGTTTGAAGGATTTT 60.322 41.667 0.00 0.00 45.46 1.82
2841 3187 3.193479 GCCTCATTCGGTTTGAAGGATTT 59.807 43.478 0.00 0.00 45.46 2.17
2842 3188 2.755103 GCCTCATTCGGTTTGAAGGATT 59.245 45.455 0.00 0.00 45.46 3.01
2843 3189 2.369394 GCCTCATTCGGTTTGAAGGAT 58.631 47.619 0.00 0.00 45.46 3.24
2844 3190 1.613255 GGCCTCATTCGGTTTGAAGGA 60.613 52.381 0.00 0.00 44.52 3.36
2845 3191 0.811281 GGCCTCATTCGGTTTGAAGG 59.189 55.000 0.00 0.00 40.65 3.46
2846 3192 1.470098 CAGGCCTCATTCGGTTTGAAG 59.530 52.381 0.00 0.00 40.65 3.02
2847 3193 1.073125 TCAGGCCTCATTCGGTTTGAA 59.927 47.619 0.00 0.00 41.81 2.69
2848 3194 0.690192 TCAGGCCTCATTCGGTTTGA 59.310 50.000 0.00 0.00 0.00 2.69
2849 3195 1.089920 CTCAGGCCTCATTCGGTTTG 58.910 55.000 0.00 0.00 0.00 2.93
2850 3196 0.984230 TCTCAGGCCTCATTCGGTTT 59.016 50.000 0.00 0.00 0.00 3.27
2851 3197 0.539051 CTCTCAGGCCTCATTCGGTT 59.461 55.000 0.00 0.00 0.00 4.44
2852 3198 1.333636 CCTCTCAGGCCTCATTCGGT 61.334 60.000 0.00 0.00 0.00 4.69
2853 3199 1.045350 TCCTCTCAGGCCTCATTCGG 61.045 60.000 0.00 0.00 34.61 4.30
2854 3200 0.826715 TTCCTCTCAGGCCTCATTCG 59.173 55.000 0.00 0.00 34.61 3.34
2855 3201 1.556911 TGTTCCTCTCAGGCCTCATTC 59.443 52.381 0.00 0.00 34.61 2.67
2856 3202 1.661463 TGTTCCTCTCAGGCCTCATT 58.339 50.000 0.00 0.00 34.61 2.57
2857 3203 1.661463 TTGTTCCTCTCAGGCCTCAT 58.339 50.000 0.00 0.00 34.61 2.90
2858 3204 1.661463 ATTGTTCCTCTCAGGCCTCA 58.339 50.000 0.00 0.00 34.61 3.86
2859 3205 3.914426 TTATTGTTCCTCTCAGGCCTC 57.086 47.619 0.00 0.00 34.61 4.70
2860 3206 4.103311 GGTATTATTGTTCCTCTCAGGCCT 59.897 45.833 0.00 0.00 34.61 5.19
2861 3207 4.103311 AGGTATTATTGTTCCTCTCAGGCC 59.897 45.833 0.00 0.00 34.61 5.19
2862 3208 5.297569 AGGTATTATTGTTCCTCTCAGGC 57.702 43.478 0.00 0.00 34.61 4.85
2863 3209 6.516860 CGGTAGGTATTATTGTTCCTCTCAGG 60.517 46.154 0.00 0.00 36.46 3.86
2864 3210 6.448006 CGGTAGGTATTATTGTTCCTCTCAG 58.552 44.000 0.00 0.00 0.00 3.35
2999 3635 0.472471 AGGTCGCTGGTTTGAAGGAA 59.528 50.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.