Multiple sequence alignment - TraesCS6A01G031200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G031200 chr6A 100.000 3530 0 0 1 3530 15783628 15780099 0.000000e+00 6519.0
1 TraesCS6A01G031200 chr6A 84.031 1816 252 27 802 2601 15765793 15767586 0.000000e+00 1712.0
2 TraesCS6A01G031200 chr6A 86.628 1533 197 5 1001 2532 15727844 15729369 0.000000e+00 1688.0
3 TraesCS6A01G031200 chr6D 90.804 2588 181 30 638 3214 14618367 14620908 0.000000e+00 3408.0
4 TraesCS6A01G031200 chr6D 87.323 1483 184 4 1043 2523 14632949 14631469 0.000000e+00 1694.0
5 TraesCS6A01G031200 chr6D 85.033 1677 234 10 865 2537 14626116 14624453 0.000000e+00 1690.0
6 TraesCS6A01G031200 chr6D 86.441 1534 191 10 1001 2532 14664527 14663009 0.000000e+00 1664.0
7 TraesCS6A01G031200 chr6D 91.745 642 45 3 1 642 14617699 14618332 0.000000e+00 885.0
8 TraesCS6A01G031200 chr6B 93.163 2267 119 9 638 2893 26590764 26593005 0.000000e+00 3295.0
9 TraesCS6A01G031200 chr6B 85.450 1677 227 10 865 2537 26597908 26596245 0.000000e+00 1729.0
10 TraesCS6A01G031200 chr6B 86.441 1534 198 7 1001 2532 26634792 26633267 0.000000e+00 1672.0
11 TraesCS6A01G031200 chr6B 89.645 647 54 8 1 644 26590095 26590731 0.000000e+00 811.0
12 TraesCS6A01G031200 chr1D 91.525 59 4 1 3208 3266 298438601 298438658 2.920000e-11 80.5
13 TraesCS6A01G031200 chr1B 92.593 54 3 1 3213 3266 171393139 171393087 3.780000e-10 76.8
14 TraesCS6A01G031200 chr1B 86.441 59 3 5 3208 3266 360362176 360362229 3.810000e-05 60.2
15 TraesCS6A01G031200 chr5D 89.831 59 4 2 3209 3266 54776626 54776569 1.360000e-09 75.0
16 TraesCS6A01G031200 chr3A 90.909 55 4 1 3213 3266 208266723 208266777 4.890000e-09 73.1
17 TraesCS6A01G031200 chr5B 88.136 59 5 2 3207 3265 334942265 334942209 6.320000e-08 69.4
18 TraesCS6A01G031200 chr7B 89.286 56 3 3 3215 3268 676237068 676237122 2.270000e-07 67.6
19 TraesCS6A01G031200 chr5A 86.885 61 6 2 3207 3266 302304225 302304284 2.270000e-07 67.6
20 TraesCS6A01G031200 chr7A 84.615 65 5 5 3205 3267 95375955 95375894 3.810000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G031200 chr6A 15780099 15783628 3529 True 6519.0 6519 100.0000 1 3530 1 chr6A.!!$R1 3529
1 TraesCS6A01G031200 chr6A 15765793 15767586 1793 False 1712.0 1712 84.0310 802 2601 1 chr6A.!!$F2 1799
2 TraesCS6A01G031200 chr6A 15727844 15729369 1525 False 1688.0 1688 86.6280 1001 2532 1 chr6A.!!$F1 1531
3 TraesCS6A01G031200 chr6D 14617699 14620908 3209 False 2146.5 3408 91.2745 1 3214 2 chr6D.!!$F1 3213
4 TraesCS6A01G031200 chr6D 14631469 14632949 1480 True 1694.0 1694 87.3230 1043 2523 1 chr6D.!!$R2 1480
5 TraesCS6A01G031200 chr6D 14624453 14626116 1663 True 1690.0 1690 85.0330 865 2537 1 chr6D.!!$R1 1672
6 TraesCS6A01G031200 chr6D 14663009 14664527 1518 True 1664.0 1664 86.4410 1001 2532 1 chr6D.!!$R3 1531
7 TraesCS6A01G031200 chr6B 26590095 26593005 2910 False 2053.0 3295 91.4040 1 2893 2 chr6B.!!$F1 2892
8 TraesCS6A01G031200 chr6B 26596245 26597908 1663 True 1729.0 1729 85.4500 865 2537 1 chr6B.!!$R1 1672
9 TraesCS6A01G031200 chr6B 26633267 26634792 1525 True 1672.0 1672 86.4410 1001 2532 1 chr6B.!!$R2 1531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 1013 0.249953 CCATCTAGGAGCAGCAGCAG 60.250 60.000 3.17 0.0 45.49 4.24 F
1584 1655 1.080569 CCACGCCATCCAAAAGTGC 60.081 57.895 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 1896 1.069090 GTTGTCGGTGGTGAGCTCA 59.931 57.895 13.74 13.74 0.00 4.26 R
3500 3599 0.108585 TTGAGGGACAGCTGGTTGTC 59.891 55.000 19.93 6.99 45.28 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.751437 GTACATGTCCTTGAAGGGGC 58.249 55.000 11.99 5.62 35.59 5.80
51 52 2.041115 GTCCTTGAAGGGGCGAAGC 61.041 63.158 11.99 0.00 44.73 3.86
71 72 3.316308 AGCCATTTCGCCATAGTTGAATC 59.684 43.478 0.00 0.00 0.00 2.52
130 131 3.581024 TCAACTACATACACACGGACC 57.419 47.619 0.00 0.00 0.00 4.46
134 135 1.585267 TACATACACACGGACCGCGT 61.585 55.000 15.39 8.02 0.00 6.01
215 217 9.346725 CTCAAATCTAACTCAAATTTTGCTACC 57.653 33.333 4.19 0.00 0.00 3.18
226 228 8.729805 TCAAATTTTGCTACCAACTGAATTTT 57.270 26.923 4.19 0.00 31.50 1.82
227 229 8.825745 TCAAATTTTGCTACCAACTGAATTTTC 58.174 29.630 4.19 0.00 31.50 2.29
246 248 8.681486 AATTTTCTAAAATTCTGCTTGGCTTT 57.319 26.923 7.44 0.00 43.12 3.51
247 249 8.681486 ATTTTCTAAAATTCTGCTTGGCTTTT 57.319 26.923 0.00 0.00 35.16 2.27
248 250 9.777297 ATTTTCTAAAATTCTGCTTGGCTTTTA 57.223 25.926 0.00 0.00 35.16 1.52
249 251 9.606631 TTTTCTAAAATTCTGCTTGGCTTTTAA 57.393 25.926 0.00 0.00 0.00 1.52
288 290 3.715628 ACTTCAAACCATGTGAACAGC 57.284 42.857 0.00 0.00 31.78 4.40
298 300 1.825090 TGTGAACAGCATCCCACATC 58.175 50.000 0.00 0.00 34.96 3.06
316 318 3.119029 ACATCAATTCCGCCAAATCAAGG 60.119 43.478 0.00 0.00 0.00 3.61
317 319 1.824230 TCAATTCCGCCAAATCAAGGG 59.176 47.619 0.00 0.00 0.00 3.95
327 329 2.843912 AAATCAAGGGGGCGAGCCTG 62.844 60.000 14.33 4.45 36.10 4.85
389 391 1.136891 GGGCACACAAAATATCAGGCC 59.863 52.381 0.00 0.00 39.40 5.19
486 490 2.672295 GGATAACCACCCGTGCCA 59.328 61.111 0.00 0.00 35.97 4.92
539 543 1.236628 GCGGCGAGGATCTAGTCTAA 58.763 55.000 12.98 0.00 0.00 2.10
560 564 8.610035 GTCTAAAATCCCTTAACAATCGGTTAG 58.390 37.037 0.00 0.00 42.63 2.34
600 604 2.039084 AGATTCAACGCTCTCCAAAGGT 59.961 45.455 0.00 0.00 0.00 3.50
633 637 6.494835 AGATTAAGCCAAAACTGGAGTGATTT 59.505 34.615 0.00 0.00 0.00 2.17
671 715 1.315690 CATAGGGTGCAATGCAGGAG 58.684 55.000 8.73 0.00 40.08 3.69
687 731 9.330063 CAATGCAGGAGTAGTTTATTGAATCTA 57.670 33.333 0.00 0.00 0.00 1.98
697 741 6.806751 AGTTTATTGAATCTACGCTGCTAGA 58.193 36.000 9.98 9.98 0.00 2.43
699 743 7.383572 AGTTTATTGAATCTACGCTGCTAGATG 59.616 37.037 16.78 0.00 34.30 2.90
726 770 7.611855 AGCTACCTGTAATTGCTTTTCTACAAT 59.388 33.333 0.00 0.00 38.11 2.71
730 774 5.398169 TGTAATTGCTTTTCTACAATGCCG 58.602 37.500 0.00 0.00 36.64 5.69
781 829 4.142730 GCTGTGAAACTGGCTAGAATCTTG 60.143 45.833 3.17 0.00 38.04 3.02
799 847 5.425577 TCTTGAGGAATCGAGTAAGATCG 57.574 43.478 0.00 0.00 44.07 3.69
820 868 2.356535 GGATCCCAATGTCAACTCTGCT 60.357 50.000 0.00 0.00 0.00 4.24
822 870 1.081892 CCCAATGTCAACTCTGCTCG 58.918 55.000 0.00 0.00 0.00 5.03
823 871 0.445436 CCAATGTCAACTCTGCTCGC 59.555 55.000 0.00 0.00 0.00 5.03
824 872 1.436600 CAATGTCAACTCTGCTCGCT 58.563 50.000 0.00 0.00 0.00 4.93
903 951 2.165030 CCCAGATCCAAAGCATCAACAC 59.835 50.000 0.00 0.00 0.00 3.32
904 952 2.165030 CCAGATCCAAAGCATCAACACC 59.835 50.000 0.00 0.00 0.00 4.16
905 953 2.821378 CAGATCCAAAGCATCAACACCA 59.179 45.455 0.00 0.00 0.00 4.17
906 954 3.087031 AGATCCAAAGCATCAACACCAG 58.913 45.455 0.00 0.00 0.00 4.00
907 955 0.961019 TCCAAAGCATCAACACCAGC 59.039 50.000 0.00 0.00 0.00 4.85
908 956 0.387622 CCAAAGCATCAACACCAGCG 60.388 55.000 0.00 0.00 0.00 5.18
909 957 1.005294 CAAAGCATCAACACCAGCGC 61.005 55.000 0.00 0.00 0.00 5.92
910 958 2.146073 AAAGCATCAACACCAGCGCC 62.146 55.000 2.29 0.00 0.00 6.53
911 959 3.364441 GCATCAACACCAGCGCCA 61.364 61.111 2.29 0.00 0.00 5.69
912 960 2.703798 GCATCAACACCAGCGCCAT 61.704 57.895 2.29 0.00 0.00 4.40
913 961 1.885157 CATCAACACCAGCGCCATT 59.115 52.632 2.29 0.00 0.00 3.16
914 962 0.457166 CATCAACACCAGCGCCATTG 60.457 55.000 2.29 0.00 0.00 2.82
915 963 2.216750 ATCAACACCAGCGCCATTGC 62.217 55.000 2.29 0.00 0.00 3.56
916 964 2.911509 AACACCAGCGCCATTGCA 60.912 55.556 2.29 0.00 37.32 4.08
917 965 2.497173 AACACCAGCGCCATTGCAA 61.497 52.632 2.29 0.00 37.32 4.08
918 966 2.126228 CACCAGCGCCATTGCAAG 60.126 61.111 2.29 0.00 37.32 4.01
919 967 4.060038 ACCAGCGCCATTGCAAGC 62.060 61.111 2.29 2.55 37.32 4.01
920 968 3.755628 CCAGCGCCATTGCAAGCT 61.756 61.111 2.29 5.07 41.07 3.74
921 969 2.202570 CAGCGCCATTGCAAGCTC 60.203 61.111 2.29 0.00 37.94 4.09
922 970 2.360852 AGCGCCATTGCAAGCTCT 60.361 55.556 2.29 0.87 34.48 4.09
942 1013 0.249953 CCATCTAGGAGCAGCAGCAG 60.250 60.000 3.17 0.00 45.49 4.24
976 1047 1.868997 CACTTAGTTGCCAGTGCGG 59.131 57.895 0.00 0.00 41.78 5.69
998 1069 4.728058 GCTAGCAAGCTCGAGGAG 57.272 61.111 15.58 0.00 45.85 3.69
1134 1205 1.303561 ACACATGCGCACCTTCCAT 60.304 52.632 14.90 0.00 0.00 3.41
1347 1418 1.448540 CGCCTTCCTCGTCATGCTT 60.449 57.895 0.00 0.00 0.00 3.91
1584 1655 1.080569 CCACGCCATCCAAAAGTGC 60.081 57.895 0.00 0.00 0.00 4.40
1701 1779 3.670105 TCCTGATGGAAACCTTGCC 57.330 52.632 0.00 0.00 39.87 4.52
1719 1797 1.606531 CAGCCTCCAGAAGAAGGGG 59.393 63.158 0.00 0.00 0.00 4.79
1723 1801 1.901085 CTCCAGAAGAAGGGGGACG 59.099 63.158 0.00 0.00 0.00 4.79
1797 1875 3.118592 GGACATGGATCTTCGTCCTTCTT 60.119 47.826 16.11 0.00 43.79 2.52
1818 1896 0.618458 ACGGATACTGCATGGGTGTT 59.382 50.000 0.00 0.00 0.00 3.32
2001 2079 0.963355 GTGCCCGCCTTTGGAACATA 60.963 55.000 0.00 0.00 39.30 2.29
2010 2088 3.571401 GCCTTTGGAACATATGGATCCTG 59.429 47.826 22.87 5.56 39.30 3.86
2034 2112 1.893808 CGCTGGTGGTGCTTTCTGT 60.894 57.895 0.00 0.00 0.00 3.41
2043 2121 1.155042 GTGCTTTCTGTCTCTGGCTG 58.845 55.000 0.00 0.00 0.00 4.85
2095 2173 1.144936 GCCATGGTCCTCTTCTCCG 59.855 63.158 14.67 0.00 0.00 4.63
2172 2250 0.464373 GCTCCCTCGGCATCATTTCA 60.464 55.000 0.00 0.00 0.00 2.69
2176 2254 0.749091 CCTCGGCATCATTTCAGGCA 60.749 55.000 0.00 0.00 0.00 4.75
2232 2310 3.248363 TGACACAATTGCTCTTCTTCACG 59.752 43.478 5.05 0.00 0.00 4.35
2541 2621 2.222908 GCACGCATAAGACTTGAGCTTC 60.223 50.000 0.00 0.00 0.00 3.86
2550 2631 4.545208 AGACTTGAGCTTCTCTTTACCC 57.455 45.455 0.00 0.00 0.00 3.69
2574 2655 3.179265 ACGTACAGTGCGCGCATC 61.179 61.111 38.62 28.37 0.00 3.91
2583 2671 0.179275 GTGCGCGCATCATATACACG 60.179 55.000 38.62 0.00 0.00 4.49
2612 2704 1.366111 TACGCCTGAAATCCGCAAGC 61.366 55.000 0.00 0.00 0.00 4.01
2613 2705 2.689785 CGCCTGAAATCCGCAAGCA 61.690 57.895 0.00 0.00 0.00 3.91
2614 2706 1.138247 GCCTGAAATCCGCAAGCAG 59.862 57.895 0.00 0.00 0.00 4.24
2702 2795 3.801971 TGCGTGGATGCATGTGCG 61.802 61.111 2.46 6.46 45.83 5.34
2758 2851 2.048503 CCACTTGGGACGTCGGTC 60.049 66.667 9.92 2.36 42.66 4.79
2809 2902 5.358442 TGTTTTGCCATTGTACTTGTGTACT 59.642 36.000 7.67 0.00 46.70 2.73
2811 2904 6.458232 TTTGCCATTGTACTTGTGTACTTT 57.542 33.333 7.67 0.00 46.70 2.66
2841 2934 7.649057 TCTTCATCTACCGACATATGTGTAAG 58.351 38.462 14.43 6.32 39.09 2.34
2871 2964 5.875359 GGTGAGTATAAAGACCTTTGAGTGG 59.125 44.000 5.34 0.00 34.23 4.00
2933 3026 8.397906 GTGTTCATGTATGCTTGCTATTTTAGA 58.602 33.333 0.00 0.00 0.00 2.10
2969 3065 7.601508 ACGGATCTTAAAACGAAACTAGTCAAT 59.398 33.333 0.00 0.00 0.00 2.57
2982 3078 7.413000 CGAAACTAGTCAATAACAAGTCCATGG 60.413 40.741 4.97 4.97 0.00 3.66
2991 3087 3.611766 ACAAGTCCATGGCAGTAGTAC 57.388 47.619 6.96 0.00 0.00 2.73
2993 3089 3.326588 ACAAGTCCATGGCAGTAGTACAA 59.673 43.478 6.96 0.00 0.00 2.41
2995 3091 4.844349 AGTCCATGGCAGTAGTACAAAT 57.156 40.909 6.96 0.00 0.00 2.32
2996 3092 5.950544 AGTCCATGGCAGTAGTACAAATA 57.049 39.130 6.96 0.00 0.00 1.40
2999 3095 6.099701 AGTCCATGGCAGTAGTACAAATATCA 59.900 38.462 6.96 0.00 0.00 2.15
3000 3096 6.936900 GTCCATGGCAGTAGTACAAATATCAT 59.063 38.462 6.96 0.00 0.00 2.45
3002 3098 6.936335 CCATGGCAGTAGTACAAATATCATCA 59.064 38.462 0.00 0.00 0.00 3.07
3003 3099 7.095060 CCATGGCAGTAGTACAAATATCATCAC 60.095 40.741 0.00 0.00 0.00 3.06
3023 3120 9.898152 TCATCACATGATTTAGTACATGGTAAA 57.102 29.630 0.00 0.00 45.31 2.01
3049 3148 9.801873 ATTATAAAGATGTTTGGTTGCATGTAC 57.198 29.630 0.00 0.00 0.00 2.90
3050 3149 5.789643 AAAGATGTTTGGTTGCATGTACT 57.210 34.783 0.00 0.00 0.00 2.73
3051 3150 4.771590 AGATGTTTGGTTGCATGTACTG 57.228 40.909 0.00 0.00 0.00 2.74
3052 3151 4.144297 AGATGTTTGGTTGCATGTACTGT 58.856 39.130 0.00 0.00 0.00 3.55
3053 3152 3.706802 TGTTTGGTTGCATGTACTGTG 57.293 42.857 0.00 0.00 0.00 3.66
3054 3153 2.360483 TGTTTGGTTGCATGTACTGTGG 59.640 45.455 0.00 0.00 0.00 4.17
3055 3154 1.614996 TTGGTTGCATGTACTGTGGG 58.385 50.000 0.00 0.00 0.00 4.61
3056 3155 0.767998 TGGTTGCATGTACTGTGGGA 59.232 50.000 0.00 0.00 0.00 4.37
3062 3161 5.470098 GGTTGCATGTACTGTGGGATATAAG 59.530 44.000 0.00 0.00 0.00 1.73
3116 3215 8.783660 TTAAGGTGGATATCTGAGTGTAAGAT 57.216 34.615 2.05 0.00 38.03 2.40
3179 3278 5.581874 AGTTTGAAGATGTGCAAAACTTTGG 59.418 36.000 0.35 0.00 38.57 3.28
3183 3282 4.311816 AGATGTGCAAAACTTTGGTCAG 57.688 40.909 4.45 0.00 38.57 3.51
3186 3285 5.769662 AGATGTGCAAAACTTTGGTCAGATA 59.230 36.000 4.45 0.00 38.57 1.98
3188 3287 7.611467 AGATGTGCAAAACTTTGGTCAGATATA 59.389 33.333 4.45 0.00 38.57 0.86
3200 3299 6.061022 TGGTCAGATATACCTTGCAGAAAA 57.939 37.500 0.00 0.00 37.91 2.29
3214 3313 9.247861 ACCTTGCAGAAAAATCAACTTATCTAT 57.752 29.630 0.00 0.00 0.00 1.98
3259 3358 7.617041 GAACTATTGTTCTATGGTTTGAGCT 57.383 36.000 12.08 0.00 46.56 4.09
3260 3359 8.045176 GAACTATTGTTCTATGGTTTGAGCTT 57.955 34.615 12.08 0.00 46.56 3.74
3261 3360 9.162764 GAACTATTGTTCTATGGTTTGAGCTTA 57.837 33.333 12.08 0.00 46.56 3.09
3262 3361 9.515226 AACTATTGTTCTATGGTTTGAGCTTAA 57.485 29.630 0.00 0.00 0.00 1.85
3263 3362 9.515226 ACTATTGTTCTATGGTTTGAGCTTAAA 57.485 29.630 0.00 0.00 0.00 1.52
3266 3365 9.696917 ATTGTTCTATGGTTTGAGCTTAAAAAG 57.303 29.630 5.08 2.12 0.00 2.27
3267 3366 8.458573 TGTTCTATGGTTTGAGCTTAAAAAGA 57.541 30.769 5.08 4.29 0.00 2.52
3268 3367 9.077885 TGTTCTATGGTTTGAGCTTAAAAAGAT 57.922 29.630 5.08 1.32 0.00 2.40
3269 3368 9.914131 GTTCTATGGTTTGAGCTTAAAAAGATT 57.086 29.630 5.08 0.00 0.00 2.40
3317 3416 7.649370 CAATTAATTGCCATGTTTGTACACA 57.351 32.000 14.96 0.00 37.03 3.72
3318 3417 8.081208 CAATTAATTGCCATGTTTGTACACAA 57.919 30.769 14.96 0.00 37.03 3.33
3319 3418 7.650834 ATTAATTGCCATGTTTGTACACAAC 57.349 32.000 0.00 4.61 37.03 3.32
3320 3419 4.662468 ATTGCCATGTTTGTACACAACA 57.338 36.364 19.09 19.09 37.03 3.33
3321 3420 4.456280 TTGCCATGTTTGTACACAACAA 57.544 36.364 20.05 10.01 46.41 2.83
3334 3433 7.159322 TGTACACAACAAATTTAACCACTGT 57.841 32.000 0.00 0.00 34.29 3.55
3335 3434 7.603651 TGTACACAACAAATTTAACCACTGTT 58.396 30.769 0.00 0.00 34.29 3.16
3336 3435 8.088981 TGTACACAACAAATTTAACCACTGTTT 58.911 29.630 0.00 0.00 34.29 2.83
3337 3436 7.971183 ACACAACAAATTTAACCACTGTTTT 57.029 28.000 0.00 0.00 35.87 2.43
3338 3437 7.801752 ACACAACAAATTTAACCACTGTTTTG 58.198 30.769 0.00 0.00 35.08 2.44
3339 3438 6.740453 CACAACAAATTTAACCACTGTTTTGC 59.260 34.615 0.00 0.00 35.87 3.68
3340 3439 6.428159 ACAACAAATTTAACCACTGTTTTGCA 59.572 30.769 0.00 0.00 35.87 4.08
3341 3440 7.041098 ACAACAAATTTAACCACTGTTTTGCAA 60.041 29.630 0.00 0.00 35.87 4.08
3342 3441 7.071014 ACAAATTTAACCACTGTTTTGCAAG 57.929 32.000 0.00 0.00 35.87 4.01
3343 3442 6.876257 ACAAATTTAACCACTGTTTTGCAAGA 59.124 30.769 0.00 0.00 35.87 3.02
3344 3443 7.552330 ACAAATTTAACCACTGTTTTGCAAGAT 59.448 29.630 0.00 0.00 35.87 2.40
3345 3444 9.039870 CAAATTTAACCACTGTTTTGCAAGATA 57.960 29.630 0.00 0.00 35.87 1.98
3346 3445 9.606631 AAATTTAACCACTGTTTTGCAAGATAA 57.393 25.926 0.00 0.00 35.87 1.75
3347 3446 7.995463 TTTAACCACTGTTTTGCAAGATAAC 57.005 32.000 0.00 2.14 35.87 1.89
3348 3447 5.852282 AACCACTGTTTTGCAAGATAACT 57.148 34.783 12.41 0.00 0.00 2.24
3349 3448 5.186996 ACCACTGTTTTGCAAGATAACTG 57.813 39.130 14.31 14.31 0.00 3.16
3350 3449 4.644685 ACCACTGTTTTGCAAGATAACTGT 59.355 37.500 15.30 15.30 35.29 3.55
3351 3450 5.825679 ACCACTGTTTTGCAAGATAACTGTA 59.174 36.000 18.68 0.00 33.86 2.74
3352 3451 6.490040 ACCACTGTTTTGCAAGATAACTGTAT 59.510 34.615 18.68 11.12 33.86 2.29
3353 3452 7.014230 ACCACTGTTTTGCAAGATAACTGTATT 59.986 33.333 18.68 10.04 33.86 1.89
3354 3453 7.867403 CCACTGTTTTGCAAGATAACTGTATTT 59.133 33.333 18.68 1.54 33.86 1.40
3355 3454 9.248291 CACTGTTTTGCAAGATAACTGTATTTT 57.752 29.630 18.68 1.26 33.86 1.82
3356 3455 9.816354 ACTGTTTTGCAAGATAACTGTATTTTT 57.184 25.926 18.03 0.10 33.86 1.94
3358 3457 9.809096 TGTTTTGCAAGATAACTGTATTTTTCA 57.191 25.926 12.41 0.00 0.00 2.69
3361 3460 9.638239 TTTGCAAGATAACTGTATTTTTCATCC 57.362 29.630 0.00 0.00 0.00 3.51
3362 3461 7.771183 TGCAAGATAACTGTATTTTTCATCCC 58.229 34.615 0.00 0.00 0.00 3.85
3363 3462 7.615365 TGCAAGATAACTGTATTTTTCATCCCT 59.385 33.333 0.00 0.00 0.00 4.20
3364 3463 8.131731 GCAAGATAACTGTATTTTTCATCCCTC 58.868 37.037 0.00 0.00 0.00 4.30
3365 3464 8.338259 CAAGATAACTGTATTTTTCATCCCTCG 58.662 37.037 0.00 0.00 0.00 4.63
3366 3465 7.792032 AGATAACTGTATTTTTCATCCCTCGA 58.208 34.615 0.00 0.00 0.00 4.04
3367 3466 7.711339 AGATAACTGTATTTTTCATCCCTCGAC 59.289 37.037 0.00 0.00 0.00 4.20
3368 3467 5.422214 ACTGTATTTTTCATCCCTCGACT 57.578 39.130 0.00 0.00 0.00 4.18
3369 3468 5.805728 ACTGTATTTTTCATCCCTCGACTT 58.194 37.500 0.00 0.00 0.00 3.01
3370 3469 6.942976 ACTGTATTTTTCATCCCTCGACTTA 58.057 36.000 0.00 0.00 0.00 2.24
3371 3470 7.565680 ACTGTATTTTTCATCCCTCGACTTAT 58.434 34.615 0.00 0.00 0.00 1.73
3372 3471 7.711339 ACTGTATTTTTCATCCCTCGACTTATC 59.289 37.037 0.00 0.00 0.00 1.75
3373 3472 7.792032 TGTATTTTTCATCCCTCGACTTATCT 58.208 34.615 0.00 0.00 0.00 1.98
3374 3473 8.265055 TGTATTTTTCATCCCTCGACTTATCTT 58.735 33.333 0.00 0.00 0.00 2.40
3375 3474 9.760077 GTATTTTTCATCCCTCGACTTATCTTA 57.240 33.333 0.00 0.00 0.00 2.10
3376 3475 8.894768 ATTTTTCATCCCTCGACTTATCTTAG 57.105 34.615 0.00 0.00 0.00 2.18
3377 3476 7.655521 TTTTCATCCCTCGACTTATCTTAGA 57.344 36.000 0.00 0.00 0.00 2.10
3378 3477 7.655521 TTTCATCCCTCGACTTATCTTAGAA 57.344 36.000 0.00 0.00 0.00 2.10
3379 3478 6.636562 TCATCCCTCGACTTATCTTAGAAC 57.363 41.667 0.00 0.00 0.00 3.01
3380 3479 5.238868 TCATCCCTCGACTTATCTTAGAACG 59.761 44.000 0.00 0.00 0.00 3.95
3381 3480 4.521146 TCCCTCGACTTATCTTAGAACGT 58.479 43.478 0.00 0.00 0.00 3.99
3382 3481 5.674525 TCCCTCGACTTATCTTAGAACGTA 58.325 41.667 0.00 0.00 0.00 3.57
3383 3482 6.294473 TCCCTCGACTTATCTTAGAACGTAT 58.706 40.000 0.00 0.00 0.00 3.06
3384 3483 6.426328 TCCCTCGACTTATCTTAGAACGTATC 59.574 42.308 0.00 0.00 0.00 2.24
3385 3484 6.427547 CCCTCGACTTATCTTAGAACGTATCT 59.572 42.308 0.00 0.00 42.48 1.98
3386 3485 7.041235 CCCTCGACTTATCTTAGAACGTATCTT 60.041 40.741 5.74 0.00 39.71 2.40
3387 3486 8.344098 CCTCGACTTATCTTAGAACGTATCTTT 58.656 37.037 5.74 0.00 39.71 2.52
3388 3487 9.719279 CTCGACTTATCTTAGAACGTATCTTTT 57.281 33.333 5.74 0.00 39.71 2.27
3389 3488 9.499585 TCGACTTATCTTAGAACGTATCTTTTG 57.500 33.333 5.74 0.00 39.71 2.44
3390 3489 9.286946 CGACTTATCTTAGAACGTATCTTTTGT 57.713 33.333 5.74 0.00 39.71 2.83
3392 3491 9.583765 ACTTATCTTAGAACGTATCTTTTGTCC 57.416 33.333 5.74 0.00 39.71 4.02
3393 3492 8.937634 TTATCTTAGAACGTATCTTTTGTCCC 57.062 34.615 5.74 0.00 39.71 4.46
3394 3493 6.600882 TCTTAGAACGTATCTTTTGTCCCT 57.399 37.500 5.74 0.00 39.71 4.20
3395 3494 6.628185 TCTTAGAACGTATCTTTTGTCCCTC 58.372 40.000 5.74 0.00 39.71 4.30
3396 3495 4.884668 AGAACGTATCTTTTGTCCCTCA 57.115 40.909 0.00 0.00 33.39 3.86
3397 3496 5.223449 AGAACGTATCTTTTGTCCCTCAA 57.777 39.130 0.00 0.00 33.39 3.02
3398 3497 5.238583 AGAACGTATCTTTTGTCCCTCAAG 58.761 41.667 0.00 0.00 37.35 3.02
3399 3498 3.335579 ACGTATCTTTTGTCCCTCAAGC 58.664 45.455 0.00 0.00 37.35 4.01
3400 3499 3.244422 ACGTATCTTTTGTCCCTCAAGCA 60.244 43.478 0.00 0.00 37.35 3.91
3401 3500 3.125316 CGTATCTTTTGTCCCTCAAGCAC 59.875 47.826 0.00 0.00 37.35 4.40
3402 3501 3.515602 ATCTTTTGTCCCTCAAGCACT 57.484 42.857 0.00 0.00 37.35 4.40
3403 3502 3.297134 TCTTTTGTCCCTCAAGCACTT 57.703 42.857 0.00 0.00 37.35 3.16
3404 3503 3.631250 TCTTTTGTCCCTCAAGCACTTT 58.369 40.909 0.00 0.00 37.35 2.66
3405 3504 4.023291 TCTTTTGTCCCTCAAGCACTTTT 58.977 39.130 0.00 0.00 37.35 2.27
3406 3505 4.466015 TCTTTTGTCCCTCAAGCACTTTTT 59.534 37.500 0.00 0.00 37.35 1.94
3407 3506 3.799281 TTGTCCCTCAAGCACTTTTTG 57.201 42.857 0.00 0.00 0.00 2.44
3408 3507 2.031120 TGTCCCTCAAGCACTTTTTGG 58.969 47.619 0.00 0.00 0.00 3.28
3409 3508 2.031870 GTCCCTCAAGCACTTTTTGGT 58.968 47.619 0.00 0.00 37.63 3.67
3410 3509 2.031120 TCCCTCAAGCACTTTTTGGTG 58.969 47.619 0.00 0.00 35.58 4.17
3411 3510 2.031120 CCCTCAAGCACTTTTTGGTGA 58.969 47.619 0.00 0.00 39.34 4.02
3412 3511 2.035066 CCCTCAAGCACTTTTTGGTGAG 59.965 50.000 0.00 0.00 39.34 3.51
3413 3512 2.951642 CCTCAAGCACTTTTTGGTGAGA 59.048 45.455 0.00 0.00 39.34 3.27
3414 3513 3.381272 CCTCAAGCACTTTTTGGTGAGAA 59.619 43.478 0.00 0.00 39.34 2.87
3415 3514 4.038402 CCTCAAGCACTTTTTGGTGAGAAT 59.962 41.667 0.00 0.00 39.34 2.40
3416 3515 5.452356 CCTCAAGCACTTTTTGGTGAGAATT 60.452 40.000 0.00 0.00 39.34 2.17
3417 3516 5.976458 TCAAGCACTTTTTGGTGAGAATTT 58.024 33.333 0.00 0.00 39.34 1.82
3418 3517 6.042143 TCAAGCACTTTTTGGTGAGAATTTC 58.958 36.000 0.00 0.00 39.34 2.17
3419 3518 5.596836 AGCACTTTTTGGTGAGAATTTCA 57.403 34.783 0.00 0.00 39.34 2.69
3432 3531 5.875224 TGAGAATTTCACCATCAACTACCA 58.125 37.500 0.00 0.00 0.00 3.25
3433 3532 6.303054 TGAGAATTTCACCATCAACTACCAA 58.697 36.000 0.00 0.00 0.00 3.67
3434 3533 6.947733 TGAGAATTTCACCATCAACTACCAAT 59.052 34.615 0.00 0.00 0.00 3.16
3435 3534 8.106462 TGAGAATTTCACCATCAACTACCAATA 58.894 33.333 0.00 0.00 0.00 1.90
3436 3535 8.281212 AGAATTTCACCATCAACTACCAATAC 57.719 34.615 0.00 0.00 0.00 1.89
3437 3536 7.339466 AGAATTTCACCATCAACTACCAATACC 59.661 37.037 0.00 0.00 0.00 2.73
3438 3537 4.131649 TCACCATCAACTACCAATACCG 57.868 45.455 0.00 0.00 0.00 4.02
3439 3538 3.118555 TCACCATCAACTACCAATACCGG 60.119 47.826 0.00 0.00 0.00 5.28
3440 3539 2.841881 ACCATCAACTACCAATACCGGT 59.158 45.455 13.98 13.98 43.46 5.28
3441 3540 3.264964 ACCATCAACTACCAATACCGGTT 59.735 43.478 15.04 0.00 40.67 4.44
3442 3541 4.470664 ACCATCAACTACCAATACCGGTTA 59.529 41.667 15.04 0.00 40.67 2.85
3443 3542 5.131475 ACCATCAACTACCAATACCGGTTAT 59.869 40.000 15.04 0.00 40.67 1.89
3444 3543 6.059484 CCATCAACTACCAATACCGGTTATT 58.941 40.000 15.04 7.97 40.67 1.40
3445 3544 6.544564 CCATCAACTACCAATACCGGTTATTT 59.455 38.462 15.04 1.14 40.67 1.40
3446 3545 7.067737 CCATCAACTACCAATACCGGTTATTTT 59.932 37.037 15.04 0.00 40.67 1.82
3447 3546 7.999450 TCAACTACCAATACCGGTTATTTTT 57.001 32.000 15.04 2.77 40.67 1.94
3448 3547 8.042944 TCAACTACCAATACCGGTTATTTTTC 57.957 34.615 15.04 0.00 40.67 2.29
3449 3548 7.884354 TCAACTACCAATACCGGTTATTTTTCT 59.116 33.333 15.04 0.00 40.67 2.52
3450 3549 8.517056 CAACTACCAATACCGGTTATTTTTCTT 58.483 33.333 15.04 0.00 40.67 2.52
3451 3550 8.047413 ACTACCAATACCGGTTATTTTTCTTG 57.953 34.615 15.04 4.34 40.67 3.02
3452 3551 7.884354 ACTACCAATACCGGTTATTTTTCTTGA 59.116 33.333 15.04 0.00 40.67 3.02
3453 3552 6.916440 ACCAATACCGGTTATTTTTCTTGAC 58.084 36.000 15.04 0.00 34.91 3.18
3454 3553 6.490721 ACCAATACCGGTTATTTTTCTTGACA 59.509 34.615 15.04 0.00 34.91 3.58
3455 3554 7.014422 ACCAATACCGGTTATTTTTCTTGACAA 59.986 33.333 15.04 0.00 34.91 3.18
3456 3555 8.032451 CCAATACCGGTTATTTTTCTTGACAAT 58.968 33.333 15.04 0.00 0.00 2.71
3457 3556 8.859156 CAATACCGGTTATTTTTCTTGACAATG 58.141 33.333 15.04 0.00 0.00 2.82
3458 3557 6.642707 ACCGGTTATTTTTCTTGACAATGA 57.357 33.333 0.00 0.00 0.00 2.57
3459 3558 7.227049 ACCGGTTATTTTTCTTGACAATGAT 57.773 32.000 0.00 0.00 0.00 2.45
3460 3559 7.312899 ACCGGTTATTTTTCTTGACAATGATC 58.687 34.615 0.00 0.00 0.00 2.92
3461 3560 7.040062 ACCGGTTATTTTTCTTGACAATGATCA 60.040 33.333 0.00 0.00 0.00 2.92
3462 3561 7.975616 CCGGTTATTTTTCTTGACAATGATCAT 59.024 33.333 1.18 1.18 0.00 2.45
3463 3562 9.013490 CGGTTATTTTTCTTGACAATGATCATC 57.987 33.333 9.06 0.00 0.00 2.92
3464 3563 9.305925 GGTTATTTTTCTTGACAATGATCATCC 57.694 33.333 9.06 2.39 0.00 3.51
3468 3567 8.868522 TTTTTCTTGACAATGATCATCCTACT 57.131 30.769 9.06 0.00 0.00 2.57
3469 3568 8.868522 TTTTCTTGACAATGATCATCCTACTT 57.131 30.769 9.06 0.00 0.00 2.24
3470 3569 7.854557 TTCTTGACAATGATCATCCTACTTG 57.145 36.000 9.06 5.80 0.00 3.16
3471 3570 6.351711 TCTTGACAATGATCATCCTACTTGG 58.648 40.000 9.06 0.00 37.10 3.61
3472 3571 4.454678 TGACAATGATCATCCTACTTGGC 58.545 43.478 9.06 6.01 35.26 4.52
3473 3572 4.080413 TGACAATGATCATCCTACTTGGCA 60.080 41.667 9.06 8.79 35.26 4.92
3474 3573 5.057843 ACAATGATCATCCTACTTGGCAT 57.942 39.130 9.06 0.00 35.26 4.40
3475 3574 4.825634 ACAATGATCATCCTACTTGGCATG 59.174 41.667 9.06 1.43 35.26 4.06
3476 3575 4.719026 ATGATCATCCTACTTGGCATGT 57.281 40.909 11.04 11.04 35.26 3.21
3477 3576 4.508551 TGATCATCCTACTTGGCATGTT 57.491 40.909 11.53 0.00 35.26 2.71
3478 3577 4.858850 TGATCATCCTACTTGGCATGTTT 58.141 39.130 11.53 0.00 35.26 2.83
3479 3578 5.263599 TGATCATCCTACTTGGCATGTTTT 58.736 37.500 11.53 0.00 35.26 2.43
3480 3579 6.422333 TGATCATCCTACTTGGCATGTTTTA 58.578 36.000 11.53 0.00 35.26 1.52
3481 3580 6.543465 TGATCATCCTACTTGGCATGTTTTAG 59.457 38.462 11.53 3.34 35.26 1.85
3482 3581 5.192927 TCATCCTACTTGGCATGTTTTAGG 58.807 41.667 11.53 12.03 35.26 2.69
3483 3582 4.650972 TCCTACTTGGCATGTTTTAGGT 57.349 40.909 11.53 0.00 35.26 3.08
3484 3583 4.331968 TCCTACTTGGCATGTTTTAGGTG 58.668 43.478 11.53 0.00 35.26 4.00
3485 3584 3.443681 CCTACTTGGCATGTTTTAGGTGG 59.556 47.826 11.53 0.00 0.00 4.61
3486 3585 2.957474 ACTTGGCATGTTTTAGGTGGT 58.043 42.857 0.00 0.00 0.00 4.16
3487 3586 4.107127 ACTTGGCATGTTTTAGGTGGTA 57.893 40.909 0.00 0.00 0.00 3.25
3488 3587 4.672899 ACTTGGCATGTTTTAGGTGGTAT 58.327 39.130 0.00 0.00 0.00 2.73
3489 3588 5.083821 ACTTGGCATGTTTTAGGTGGTATT 58.916 37.500 0.00 0.00 0.00 1.89
3490 3589 5.542251 ACTTGGCATGTTTTAGGTGGTATTT 59.458 36.000 0.00 0.00 0.00 1.40
3491 3590 5.398603 TGGCATGTTTTAGGTGGTATTTG 57.601 39.130 0.00 0.00 0.00 2.32
3492 3591 4.180817 GGCATGTTTTAGGTGGTATTTGC 58.819 43.478 0.00 0.00 0.00 3.68
3493 3592 4.180817 GCATGTTTTAGGTGGTATTTGCC 58.819 43.478 0.00 0.00 0.00 4.52
3494 3593 4.322349 GCATGTTTTAGGTGGTATTTGCCA 60.322 41.667 0.00 0.00 35.93 4.92
3505 3604 5.574891 TGGTATTTGCCACATATGACAAC 57.425 39.130 10.38 0.70 32.81 3.32
3506 3605 4.400884 TGGTATTTGCCACATATGACAACC 59.599 41.667 10.38 9.42 32.81 3.77
3507 3606 4.400884 GGTATTTGCCACATATGACAACCA 59.599 41.667 10.38 0.00 0.00 3.67
3508 3607 4.724074 ATTTGCCACATATGACAACCAG 57.276 40.909 10.38 0.00 0.00 4.00
3509 3608 1.462616 TGCCACATATGACAACCAGC 58.537 50.000 10.38 2.06 0.00 4.85
3510 3609 1.004628 TGCCACATATGACAACCAGCT 59.995 47.619 10.38 0.00 0.00 4.24
3511 3610 1.402968 GCCACATATGACAACCAGCTG 59.597 52.381 10.38 6.78 0.00 4.24
3512 3611 2.715046 CCACATATGACAACCAGCTGT 58.285 47.619 13.81 0.00 0.00 4.40
3513 3612 2.679837 CCACATATGACAACCAGCTGTC 59.320 50.000 13.81 4.84 45.01 3.51
3514 3613 2.679837 CACATATGACAACCAGCTGTCC 59.320 50.000 13.81 0.00 44.30 4.02
3515 3614 2.292267 CATATGACAACCAGCTGTCCC 58.708 52.381 13.81 0.00 44.30 4.46
3516 3615 1.656587 TATGACAACCAGCTGTCCCT 58.343 50.000 13.81 0.00 44.30 4.20
3517 3616 0.326264 ATGACAACCAGCTGTCCCTC 59.674 55.000 13.81 2.50 44.30 4.30
3518 3617 1.053835 TGACAACCAGCTGTCCCTCA 61.054 55.000 13.81 5.19 44.30 3.86
3519 3618 0.108585 GACAACCAGCTGTCCCTCAA 59.891 55.000 13.81 0.00 39.93 3.02
3520 3619 0.773644 ACAACCAGCTGTCCCTCAAT 59.226 50.000 13.81 0.00 0.00 2.57
3521 3620 1.985159 ACAACCAGCTGTCCCTCAATA 59.015 47.619 13.81 0.00 0.00 1.90
3522 3621 2.578021 ACAACCAGCTGTCCCTCAATAT 59.422 45.455 13.81 0.00 0.00 1.28
3523 3622 3.780294 ACAACCAGCTGTCCCTCAATATA 59.220 43.478 13.81 0.00 0.00 0.86
3524 3623 4.227300 ACAACCAGCTGTCCCTCAATATAA 59.773 41.667 13.81 0.00 0.00 0.98
3525 3624 5.103940 ACAACCAGCTGTCCCTCAATATAAT 60.104 40.000 13.81 0.00 0.00 1.28
3526 3625 5.653255 ACCAGCTGTCCCTCAATATAATT 57.347 39.130 13.81 0.00 0.00 1.40
3527 3626 5.625150 ACCAGCTGTCCCTCAATATAATTC 58.375 41.667 13.81 0.00 0.00 2.17
3528 3627 5.132648 ACCAGCTGTCCCTCAATATAATTCA 59.867 40.000 13.81 0.00 0.00 2.57
3529 3628 6.183361 ACCAGCTGTCCCTCAATATAATTCAT 60.183 38.462 13.81 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.398044 ACGGCCAAATATTTACCTCTGTTG 59.602 41.667 2.24 4.16 0.00 3.33
6 7 4.595986 ACGGCCAAATATTTACCTCTGTT 58.404 39.130 2.24 0.00 0.00 3.16
9 10 5.362105 TGTACGGCCAAATATTTACCTCT 57.638 39.130 2.24 5.38 0.00 3.69
17 18 3.857157 AGGACATGTACGGCCAAATAT 57.143 42.857 2.24 0.00 0.00 1.28
51 52 3.559655 TCGATTCAACTATGGCGAAATGG 59.440 43.478 0.00 0.00 0.00 3.16
99 100 7.604927 GTGTGTATGTAGTTGAATTTGGAGGTA 59.395 37.037 0.00 0.00 0.00 3.08
166 168 1.059942 GCGTTGAAATTTGCTTCGGG 58.940 50.000 0.00 0.00 0.00 5.14
226 228 9.777297 AAATTAAAAGCCAAGCAGAATTTTAGA 57.223 25.926 0.00 0.00 29.79 2.10
266 268 4.036262 TGCTGTTCACATGGTTTGAAGTAC 59.964 41.667 0.00 0.00 33.63 2.73
288 290 0.670162 GGCGGAATTGATGTGGGATG 59.330 55.000 0.00 0.00 0.00 3.51
298 300 1.134729 CCCCTTGATTTGGCGGAATTG 60.135 52.381 0.00 0.00 0.00 2.32
396 398 3.047877 GACTTGGGTGCCGGTTCG 61.048 66.667 1.90 0.00 0.00 3.95
539 543 8.733458 GTTAACTAACCGATTGTTAAGGGATTT 58.267 33.333 0.00 0.00 38.91 2.17
560 564 6.715264 TGAATCTGGAGGAAGAAAAGGTTAAC 59.285 38.462 0.00 0.00 0.00 2.01
566 570 4.378874 GCGTTGAATCTGGAGGAAGAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
572 576 1.902508 AGAGCGTTGAATCTGGAGGAA 59.097 47.619 0.00 0.00 0.00 3.36
600 604 3.015383 GGCTTAATCTGGCCCCCA 58.985 61.111 0.00 0.00 42.30 4.96
633 637 9.116080 ACCCTATGGAATCATTGATAGTTGATA 57.884 33.333 0.00 0.00 34.96 2.15
653 695 0.921896 ACTCCTGCATTGCACCCTAT 59.078 50.000 7.38 0.00 33.79 2.57
671 715 6.830114 AGCAGCGTAGATTCAATAAACTAC 57.170 37.500 0.00 0.00 33.98 2.73
697 741 6.183347 AGAAAAGCAATTACAGGTAGCTCAT 58.817 36.000 0.00 0.00 33.83 2.90
699 743 6.594159 TGTAGAAAAGCAATTACAGGTAGCTC 59.406 38.462 0.00 0.00 33.83 4.09
756 804 2.751166 TCTAGCCAGTTTCACAGCTC 57.249 50.000 0.00 0.00 36.79 4.09
781 829 4.142556 GGATCCGATCTTACTCGATTCCTC 60.143 50.000 8.29 0.00 41.12 3.71
799 847 2.019984 GCAGAGTTGACATTGGGATCC 58.980 52.381 1.92 1.92 0.00 3.36
903 951 3.695022 GAGCTTGCAATGGCGCTGG 62.695 63.158 14.89 0.00 45.35 4.85
904 952 2.202570 GAGCTTGCAATGGCGCTG 60.203 61.111 14.89 0.00 45.35 5.18
905 953 2.360852 AGAGCTTGCAATGGCGCT 60.361 55.556 10.39 10.39 45.35 5.92
906 954 2.101770 GAGAGCTTGCAATGGCGC 59.898 61.111 0.00 0.00 45.35 6.53
907 955 1.381928 ATGGAGAGCTTGCAATGGCG 61.382 55.000 0.00 0.00 45.35 5.69
908 956 0.384669 GATGGAGAGCTTGCAATGGC 59.615 55.000 0.00 0.00 41.68 4.40
909 957 2.054232 AGATGGAGAGCTTGCAATGG 57.946 50.000 0.00 0.00 0.00 3.16
910 958 3.139850 CCTAGATGGAGAGCTTGCAATG 58.860 50.000 0.00 0.00 38.35 2.82
911 959 3.044156 TCCTAGATGGAGAGCTTGCAAT 58.956 45.455 0.00 0.00 40.56 3.56
912 960 2.470990 TCCTAGATGGAGAGCTTGCAA 58.529 47.619 0.00 0.00 40.56 4.08
913 961 2.165357 TCCTAGATGGAGAGCTTGCA 57.835 50.000 0.00 0.00 40.56 4.08
922 970 0.688749 TGCTGCTGCTCCTAGATGGA 60.689 55.000 17.00 0.00 43.58 3.41
942 1013 0.108138 AGTGCGTCTCTAATGGTGGC 60.108 55.000 0.00 0.00 0.00 5.01
998 1069 2.022240 GCTCGACTCCACCTCCATCC 62.022 65.000 0.00 0.00 0.00 3.51
1134 1205 3.270696 TGAAGAAGGAGATCCAGGAGAGA 59.729 47.826 0.92 0.00 38.89 3.10
1197 1268 0.249120 TGAGGTTGTCGCGGATGATT 59.751 50.000 6.13 0.00 0.00 2.57
1542 1613 1.158484 CGAGTGGCATGATGAGCTGG 61.158 60.000 0.00 0.00 0.00 4.85
1701 1779 1.606531 CCCCTTCTTCTGGAGGCTG 59.393 63.158 0.00 0.00 0.00 4.85
1719 1797 1.966451 CTTGTCCTTGGCCACGTCC 60.966 63.158 3.88 0.00 0.00 4.79
1723 1801 1.239347 GAGAACTTGTCCTTGGCCAC 58.761 55.000 3.88 0.00 0.00 5.01
1797 1875 1.834896 ACACCCATGCAGTATCCGTAA 59.165 47.619 0.00 0.00 0.00 3.18
1818 1896 1.069090 GTTGTCGGTGGTGAGCTCA 59.931 57.895 13.74 13.74 0.00 4.26
2001 2079 2.507944 GCGGTCTGCAGGATCCAT 59.492 61.111 15.82 0.00 45.45 3.41
2118 2196 1.078759 GGATGACACCGAAGACTGCG 61.079 60.000 0.00 0.00 0.00 5.18
2187 2265 4.999939 GCGCCAAAGTTGCCACCG 63.000 66.667 0.00 0.00 0.00 4.94
2232 2310 1.735559 GGTGCCGTACTTGGACGAC 60.736 63.158 6.99 0.00 45.82 4.34
2631 2723 8.445361 ACCATATATACTTACGGAAAGGGAAT 57.555 34.615 5.00 0.00 39.73 3.01
2634 2726 8.248945 CACTACCATATATACTTACGGAAAGGG 58.751 40.741 5.00 0.00 39.73 3.95
2669 2762 2.398036 CATTTCCCGCGCGTACAC 59.602 61.111 29.95 0.00 0.00 2.90
2758 2851 8.661352 ATTCAAACTGTTCATTTAACTTTGGG 57.339 30.769 0.00 0.00 38.99 4.12
2832 2925 9.674068 TTTATACTCACCAATTGCTTACACATA 57.326 29.630 0.00 0.00 0.00 2.29
2841 2934 6.759497 AAGGTCTTTATACTCACCAATTGC 57.241 37.500 0.00 0.00 0.00 3.56
2937 3030 8.944212 AGTTTCGTTTTAAGATCCGTTTATTG 57.056 30.769 0.00 0.00 0.00 1.90
2944 3037 6.939551 TGACTAGTTTCGTTTTAAGATCCG 57.060 37.500 0.00 0.00 0.00 4.18
2956 3052 7.413000 CCATGGACTTGTTATTGACTAGTTTCG 60.413 40.741 5.56 0.00 43.00 3.46
2969 3065 4.528987 TGTACTACTGCCATGGACTTGTTA 59.471 41.667 18.40 0.00 0.00 2.41
2974 3070 4.844349 ATTTGTACTACTGCCATGGACT 57.156 40.909 18.40 0.00 0.00 3.85
2982 3078 8.593492 TCATGTGATGATATTTGTACTACTGC 57.407 34.615 0.00 0.00 33.59 4.40
3018 3115 9.646427 TGCAACCAAACATCTTTATAATTTACC 57.354 29.630 0.00 0.00 0.00 2.85
3023 3120 9.801873 GTACATGCAACCAAACATCTTTATAAT 57.198 29.630 0.00 0.00 0.00 1.28
3024 3121 9.019656 AGTACATGCAACCAAACATCTTTATAA 57.980 29.630 0.00 0.00 0.00 0.98
3025 3122 8.458052 CAGTACATGCAACCAAACATCTTTATA 58.542 33.333 0.00 0.00 0.00 0.98
3027 3124 6.264292 ACAGTACATGCAACCAAACATCTTTA 59.736 34.615 0.00 0.00 0.00 1.85
3028 3125 5.068987 ACAGTACATGCAACCAAACATCTTT 59.931 36.000 0.00 0.00 0.00 2.52
3031 3130 4.229096 CACAGTACATGCAACCAAACATC 58.771 43.478 0.00 0.00 0.00 3.06
3045 3144 9.996554 CATCATTAACTTATATCCCACAGTACA 57.003 33.333 0.00 0.00 0.00 2.90
3049 3148 7.984422 TGCATCATTAACTTATATCCCACAG 57.016 36.000 0.00 0.00 0.00 3.66
3050 3149 8.759481 TTTGCATCATTAACTTATATCCCACA 57.241 30.769 0.00 0.00 0.00 4.17
3093 3192 7.682787 AATCTTACACTCAGATATCCACCTT 57.317 36.000 0.00 0.00 30.35 3.50
3143 3242 8.442384 GCACATCTTCAAACTTTTCAAGAAAAA 58.558 29.630 9.05 0.00 39.49 1.94
3144 3243 7.601886 TGCACATCTTCAAACTTTTCAAGAAAA 59.398 29.630 7.65 7.65 37.90 2.29
3150 3249 6.873076 AGTTTTGCACATCTTCAAACTTTTCA 59.127 30.769 4.91 0.00 32.58 2.69
3165 3264 6.072175 GGTATATCTGACCAAAGTTTTGCACA 60.072 38.462 0.00 1.70 36.91 4.57
3166 3265 6.151144 AGGTATATCTGACCAAAGTTTTGCAC 59.849 38.462 0.00 0.00 39.65 4.57
3179 3278 8.213518 TGATTTTTCTGCAAGGTATATCTGAC 57.786 34.615 0.00 0.00 0.00 3.51
3186 3285 9.247861 AGATAAGTTGATTTTTCTGCAAGGTAT 57.752 29.630 0.00 0.00 0.00 2.73
3188 3287 7.530426 AGATAAGTTGATTTTTCTGCAAGGT 57.470 32.000 0.00 0.00 0.00 3.50
3236 3335 9.515226 TTAAGCTCAAACCATAGAACAATAGTT 57.485 29.630 0.00 0.00 41.64 2.24
3237 3336 9.515226 TTTAAGCTCAAACCATAGAACAATAGT 57.485 29.630 0.00 0.00 0.00 2.12
3240 3339 9.696917 CTTTTTAAGCTCAAACCATAGAACAAT 57.303 29.630 0.00 0.00 0.00 2.71
3241 3340 8.908903 TCTTTTTAAGCTCAAACCATAGAACAA 58.091 29.630 0.00 0.00 0.00 2.83
3242 3341 8.458573 TCTTTTTAAGCTCAAACCATAGAACA 57.541 30.769 0.00 0.00 0.00 3.18
3243 3342 9.914131 AATCTTTTTAAGCTCAAACCATAGAAC 57.086 29.630 0.00 0.00 0.00 3.01
3293 3392 7.649370 TGTGTACAAACATGGCAATTAATTG 57.351 32.000 21.54 21.54 38.08 2.32
3294 3393 7.712639 TGTTGTGTACAAACATGGCAATTAATT 59.287 29.630 15.24 0.00 38.08 1.40
3295 3394 7.212976 TGTTGTGTACAAACATGGCAATTAAT 58.787 30.769 15.24 0.00 38.08 1.40
3296 3395 6.573434 TGTTGTGTACAAACATGGCAATTAA 58.427 32.000 15.24 0.00 38.08 1.40
3297 3396 6.149129 TGTTGTGTACAAACATGGCAATTA 57.851 33.333 15.24 0.29 38.08 1.40
3298 3397 5.016051 TGTTGTGTACAAACATGGCAATT 57.984 34.783 15.24 0.00 38.08 2.32
3299 3398 4.662468 TGTTGTGTACAAACATGGCAAT 57.338 36.364 15.24 0.00 38.08 3.56
3300 3399 4.456280 TTGTTGTGTACAAACATGGCAA 57.544 36.364 18.11 6.59 43.58 4.52
3309 3408 7.603651 ACAGTGGTTAAATTTGTTGTGTACAA 58.396 30.769 0.00 0.00 44.81 2.41
3310 3409 7.159322 ACAGTGGTTAAATTTGTTGTGTACA 57.841 32.000 0.00 0.00 34.12 2.90
3311 3410 8.468720 AAACAGTGGTTAAATTTGTTGTGTAC 57.531 30.769 0.00 0.00 35.82 2.90
3312 3411 8.926710 CAAAACAGTGGTTAAATTTGTTGTGTA 58.073 29.630 0.00 0.00 35.82 2.90
3313 3412 7.572168 GCAAAACAGTGGTTAAATTTGTTGTGT 60.572 33.333 0.00 0.00 38.57 3.72
3314 3413 6.740453 GCAAAACAGTGGTTAAATTTGTTGTG 59.260 34.615 0.00 2.09 39.07 3.33
3315 3414 6.428159 TGCAAAACAGTGGTTAAATTTGTTGT 59.572 30.769 0.00 0.00 35.82 3.32
3316 3415 6.835914 TGCAAAACAGTGGTTAAATTTGTTG 58.164 32.000 0.00 0.00 35.82 3.33
3317 3416 7.389053 TCTTGCAAAACAGTGGTTAAATTTGTT 59.611 29.630 0.00 0.00 35.82 2.83
3318 3417 6.876257 TCTTGCAAAACAGTGGTTAAATTTGT 59.124 30.769 0.00 0.00 35.82 2.83
3319 3418 7.301068 TCTTGCAAAACAGTGGTTAAATTTG 57.699 32.000 0.00 0.00 35.82 2.32
3320 3419 9.606631 TTATCTTGCAAAACAGTGGTTAAATTT 57.393 25.926 0.00 0.00 35.82 1.82
3321 3420 9.040939 GTTATCTTGCAAAACAGTGGTTAAATT 57.959 29.630 0.00 0.00 35.82 1.82
3322 3421 8.421002 AGTTATCTTGCAAAACAGTGGTTAAAT 58.579 29.630 13.46 0.00 35.82 1.40
3323 3422 7.704472 CAGTTATCTTGCAAAACAGTGGTTAAA 59.296 33.333 13.46 0.00 35.82 1.52
3324 3423 7.147983 ACAGTTATCTTGCAAAACAGTGGTTAA 60.148 33.333 13.46 0.00 35.82 2.01
3325 3424 6.320164 ACAGTTATCTTGCAAAACAGTGGTTA 59.680 34.615 13.46 0.00 35.82 2.85
3326 3425 5.127031 ACAGTTATCTTGCAAAACAGTGGTT 59.873 36.000 13.46 0.00 39.43 3.67
3327 3426 4.644685 ACAGTTATCTTGCAAAACAGTGGT 59.355 37.500 13.46 4.91 0.00 4.16
3328 3427 5.186996 ACAGTTATCTTGCAAAACAGTGG 57.813 39.130 13.46 4.42 0.00 4.00
3329 3428 8.801715 AAATACAGTTATCTTGCAAAACAGTG 57.198 30.769 16.38 9.32 0.00 3.66
3330 3429 9.816354 AAAAATACAGTTATCTTGCAAAACAGT 57.184 25.926 13.46 13.24 0.00 3.55
3332 3431 9.809096 TGAAAAATACAGTTATCTTGCAAAACA 57.191 25.926 13.46 0.00 0.00 2.83
3335 3434 9.638239 GGATGAAAAATACAGTTATCTTGCAAA 57.362 29.630 0.00 0.00 0.00 3.68
3336 3435 8.250332 GGGATGAAAAATACAGTTATCTTGCAA 58.750 33.333 0.00 0.00 0.00 4.08
3337 3436 7.615365 AGGGATGAAAAATACAGTTATCTTGCA 59.385 33.333 0.00 0.00 0.00 4.08
3338 3437 8.000780 AGGGATGAAAAATACAGTTATCTTGC 57.999 34.615 0.00 0.00 0.00 4.01
3339 3438 8.338259 CGAGGGATGAAAAATACAGTTATCTTG 58.662 37.037 0.00 0.00 0.00 3.02
3340 3439 8.265055 TCGAGGGATGAAAAATACAGTTATCTT 58.735 33.333 0.00 0.00 0.00 2.40
3341 3440 7.711339 GTCGAGGGATGAAAAATACAGTTATCT 59.289 37.037 0.00 0.00 0.00 1.98
3342 3441 7.711339 AGTCGAGGGATGAAAAATACAGTTATC 59.289 37.037 0.00 0.00 0.00 1.75
3343 3442 7.565680 AGTCGAGGGATGAAAAATACAGTTAT 58.434 34.615 0.00 0.00 0.00 1.89
3344 3443 6.942976 AGTCGAGGGATGAAAAATACAGTTA 58.057 36.000 0.00 0.00 0.00 2.24
3345 3444 5.805728 AGTCGAGGGATGAAAAATACAGTT 58.194 37.500 0.00 0.00 0.00 3.16
3346 3445 5.422214 AGTCGAGGGATGAAAAATACAGT 57.578 39.130 0.00 0.00 0.00 3.55
3347 3446 7.928706 AGATAAGTCGAGGGATGAAAAATACAG 59.071 37.037 0.00 0.00 0.00 2.74
3348 3447 7.792032 AGATAAGTCGAGGGATGAAAAATACA 58.208 34.615 0.00 0.00 0.00 2.29
3349 3448 8.664211 AAGATAAGTCGAGGGATGAAAAATAC 57.336 34.615 0.00 0.00 0.00 1.89
3350 3449 9.982651 CTAAGATAAGTCGAGGGATGAAAAATA 57.017 33.333 0.00 0.00 0.00 1.40
3351 3450 8.705594 TCTAAGATAAGTCGAGGGATGAAAAAT 58.294 33.333 0.00 0.00 0.00 1.82
3352 3451 8.074613 TCTAAGATAAGTCGAGGGATGAAAAA 57.925 34.615 0.00 0.00 0.00 1.94
3353 3452 7.655521 TCTAAGATAAGTCGAGGGATGAAAA 57.344 36.000 0.00 0.00 0.00 2.29
3354 3453 7.490000 GTTCTAAGATAAGTCGAGGGATGAAA 58.510 38.462 0.00 0.00 0.00 2.69
3355 3454 6.238676 CGTTCTAAGATAAGTCGAGGGATGAA 60.239 42.308 0.00 0.00 0.00 2.57
3356 3455 5.238868 CGTTCTAAGATAAGTCGAGGGATGA 59.761 44.000 0.00 0.00 0.00 2.92
3357 3456 5.008811 ACGTTCTAAGATAAGTCGAGGGATG 59.991 44.000 0.00 0.00 0.00 3.51
3358 3457 5.131784 ACGTTCTAAGATAAGTCGAGGGAT 58.868 41.667 0.00 0.00 0.00 3.85
3359 3458 4.521146 ACGTTCTAAGATAAGTCGAGGGA 58.479 43.478 0.00 0.00 0.00 4.20
3360 3459 4.897025 ACGTTCTAAGATAAGTCGAGGG 57.103 45.455 0.00 0.00 0.00 4.30
3361 3460 7.424227 AGATACGTTCTAAGATAAGTCGAGG 57.576 40.000 0.00 0.00 30.96 4.63
3362 3461 9.719279 AAAAGATACGTTCTAAGATAAGTCGAG 57.281 33.333 0.00 0.00 33.05 4.04
3363 3462 9.499585 CAAAAGATACGTTCTAAGATAAGTCGA 57.500 33.333 0.00 0.00 33.05 4.20
3364 3463 9.286946 ACAAAAGATACGTTCTAAGATAAGTCG 57.713 33.333 0.00 0.00 33.05 4.18
3366 3465 9.583765 GGACAAAAGATACGTTCTAAGATAAGT 57.416 33.333 0.00 0.00 33.05 2.24
3367 3466 9.032420 GGGACAAAAGATACGTTCTAAGATAAG 57.968 37.037 0.00 0.00 33.05 1.73
3368 3467 8.755977 AGGGACAAAAGATACGTTCTAAGATAA 58.244 33.333 0.00 0.00 33.05 1.75
3369 3468 8.302515 AGGGACAAAAGATACGTTCTAAGATA 57.697 34.615 0.00 0.00 33.05 1.98
3370 3469 7.093465 TGAGGGACAAAAGATACGTTCTAAGAT 60.093 37.037 0.00 0.00 33.05 2.40
3371 3470 6.209986 TGAGGGACAAAAGATACGTTCTAAGA 59.790 38.462 0.00 0.00 33.05 2.10
3372 3471 6.395629 TGAGGGACAAAAGATACGTTCTAAG 58.604 40.000 0.00 0.00 33.05 2.18
3373 3472 6.349243 TGAGGGACAAAAGATACGTTCTAA 57.651 37.500 0.00 0.00 33.05 2.10
3374 3473 5.988310 TGAGGGACAAAAGATACGTTCTA 57.012 39.130 0.00 0.00 33.05 2.10
3375 3474 4.884668 TGAGGGACAAAAGATACGTTCT 57.115 40.909 0.00 0.00 35.70 3.01
3376 3475 4.142881 GCTTGAGGGACAAAAGATACGTTC 60.143 45.833 0.00 0.00 38.08 3.95
3377 3476 3.751698 GCTTGAGGGACAAAAGATACGTT 59.248 43.478 0.00 0.00 38.08 3.99
3378 3477 3.244422 TGCTTGAGGGACAAAAGATACGT 60.244 43.478 0.00 0.00 38.08 3.57
3379 3478 3.125316 GTGCTTGAGGGACAAAAGATACG 59.875 47.826 0.00 0.00 38.08 3.06
3380 3479 4.327680 AGTGCTTGAGGGACAAAAGATAC 58.672 43.478 0.00 0.00 38.81 2.24
3381 3480 4.640771 AGTGCTTGAGGGACAAAAGATA 57.359 40.909 0.00 0.00 38.81 1.98
3382 3481 3.515602 AGTGCTTGAGGGACAAAAGAT 57.484 42.857 0.00 0.00 38.81 2.40
3383 3482 3.297134 AAGTGCTTGAGGGACAAAAGA 57.703 42.857 0.00 0.00 38.81 2.52
3384 3483 4.391405 AAAAGTGCTTGAGGGACAAAAG 57.609 40.909 0.00 0.00 38.81 2.27
3385 3484 4.502962 CAAAAAGTGCTTGAGGGACAAAA 58.497 39.130 0.00 0.00 38.81 2.44
3386 3485 3.118811 CCAAAAAGTGCTTGAGGGACAAA 60.119 43.478 0.00 0.00 38.81 2.83
3387 3486 2.430332 CCAAAAAGTGCTTGAGGGACAA 59.570 45.455 0.00 0.00 38.81 3.18
3388 3487 2.031120 CCAAAAAGTGCTTGAGGGACA 58.969 47.619 0.00 0.00 38.81 4.02
3389 3488 2.031870 ACCAAAAAGTGCTTGAGGGAC 58.968 47.619 0.00 0.00 36.48 4.46
3390 3489 2.031120 CACCAAAAAGTGCTTGAGGGA 58.969 47.619 0.00 0.00 0.00 4.20
3391 3490 2.031120 TCACCAAAAAGTGCTTGAGGG 58.969 47.619 0.00 0.00 37.68 4.30
3392 3491 2.951642 TCTCACCAAAAAGTGCTTGAGG 59.048 45.455 0.00 0.00 36.86 3.86
3393 3492 4.637483 TTCTCACCAAAAAGTGCTTGAG 57.363 40.909 0.00 0.00 37.26 3.02
3394 3493 5.596836 AATTCTCACCAAAAAGTGCTTGA 57.403 34.783 0.00 0.00 37.68 3.02
3395 3494 5.811613 TGAAATTCTCACCAAAAAGTGCTTG 59.188 36.000 0.00 0.00 37.68 4.01
3396 3495 5.976458 TGAAATTCTCACCAAAAAGTGCTT 58.024 33.333 0.00 0.00 37.68 3.91
3397 3496 5.596836 TGAAATTCTCACCAAAAAGTGCT 57.403 34.783 0.00 0.00 37.68 4.40
3409 3508 5.875224 TGGTAGTTGATGGTGAAATTCTCA 58.125 37.500 0.00 0.00 0.00 3.27
3410 3509 6.817765 TTGGTAGTTGATGGTGAAATTCTC 57.182 37.500 0.00 0.00 0.00 2.87
3411 3510 7.339466 GGTATTGGTAGTTGATGGTGAAATTCT 59.661 37.037 0.00 0.00 0.00 2.40
3412 3511 7.480810 GGTATTGGTAGTTGATGGTGAAATTC 58.519 38.462 0.00 0.00 0.00 2.17
3413 3512 6.094881 CGGTATTGGTAGTTGATGGTGAAATT 59.905 38.462 0.00 0.00 0.00 1.82
3414 3513 5.588648 CGGTATTGGTAGTTGATGGTGAAAT 59.411 40.000 0.00 0.00 0.00 2.17
3415 3514 4.938832 CGGTATTGGTAGTTGATGGTGAAA 59.061 41.667 0.00 0.00 0.00 2.69
3416 3515 4.509616 CGGTATTGGTAGTTGATGGTGAA 58.490 43.478 0.00 0.00 0.00 3.18
3417 3516 3.118555 CCGGTATTGGTAGTTGATGGTGA 60.119 47.826 0.00 0.00 0.00 4.02
3418 3517 3.202906 CCGGTATTGGTAGTTGATGGTG 58.797 50.000 0.00 0.00 0.00 4.17
3419 3518 2.841881 ACCGGTATTGGTAGTTGATGGT 59.158 45.455 4.49 0.00 41.55 3.55
3420 3519 3.553828 ACCGGTATTGGTAGTTGATGG 57.446 47.619 4.49 0.00 41.55 3.51
3421 3520 7.562454 AAATAACCGGTATTGGTAGTTGATG 57.438 36.000 8.00 0.00 42.89 3.07
3422 3521 8.584063 AAAAATAACCGGTATTGGTAGTTGAT 57.416 30.769 8.00 0.00 42.89 2.57
3423 3522 7.884354 AGAAAAATAACCGGTATTGGTAGTTGA 59.116 33.333 8.00 0.00 42.89 3.18
3424 3523 8.047413 AGAAAAATAACCGGTATTGGTAGTTG 57.953 34.615 8.00 0.00 42.89 3.16
3425 3524 8.517056 CAAGAAAAATAACCGGTATTGGTAGTT 58.483 33.333 8.00 0.00 42.89 2.24
3426 3525 7.884354 TCAAGAAAAATAACCGGTATTGGTAGT 59.116 33.333 8.00 0.00 42.89 2.73
3427 3526 8.179615 GTCAAGAAAAATAACCGGTATTGGTAG 58.820 37.037 8.00 0.00 42.89 3.18
3428 3527 7.664731 TGTCAAGAAAAATAACCGGTATTGGTA 59.335 33.333 8.00 0.00 42.89 3.25
3429 3528 6.490721 TGTCAAGAAAAATAACCGGTATTGGT 59.509 34.615 8.00 0.00 46.67 3.67
3430 3529 6.915349 TGTCAAGAAAAATAACCGGTATTGG 58.085 36.000 8.00 0.00 32.47 3.16
3431 3530 8.859156 CATTGTCAAGAAAAATAACCGGTATTG 58.141 33.333 8.00 0.00 32.47 1.90
3432 3531 8.798402 TCATTGTCAAGAAAAATAACCGGTATT 58.202 29.630 8.00 5.46 33.58 1.89
3433 3532 8.343168 TCATTGTCAAGAAAAATAACCGGTAT 57.657 30.769 8.00 0.18 0.00 2.73
3434 3533 7.747155 TCATTGTCAAGAAAAATAACCGGTA 57.253 32.000 8.00 0.00 0.00 4.02
3435 3534 6.642707 TCATTGTCAAGAAAAATAACCGGT 57.357 33.333 0.00 0.00 0.00 5.28
3436 3535 7.312154 TGATCATTGTCAAGAAAAATAACCGG 58.688 34.615 0.00 0.00 0.00 5.28
3437 3536 8.915871 ATGATCATTGTCAAGAAAAATAACCG 57.084 30.769 1.18 0.00 0.00 4.44
3438 3537 9.305925 GGATGATCATTGTCAAGAAAAATAACC 57.694 33.333 10.14 0.00 0.00 2.85
3442 3541 9.471702 AGTAGGATGATCATTGTCAAGAAAAAT 57.528 29.630 10.14 0.00 0.00 1.82
3443 3542 8.868522 AGTAGGATGATCATTGTCAAGAAAAA 57.131 30.769 10.14 0.00 0.00 1.94
3444 3543 8.733458 CAAGTAGGATGATCATTGTCAAGAAAA 58.267 33.333 10.14 0.00 0.00 2.29
3445 3544 7.337689 CCAAGTAGGATGATCATTGTCAAGAAA 59.662 37.037 10.14 0.00 41.22 2.52
3446 3545 6.825213 CCAAGTAGGATGATCATTGTCAAGAA 59.175 38.462 10.14 0.00 41.22 2.52
3447 3546 6.351711 CCAAGTAGGATGATCATTGTCAAGA 58.648 40.000 10.14 0.00 41.22 3.02
3448 3547 5.008415 GCCAAGTAGGATGATCATTGTCAAG 59.992 44.000 10.14 0.00 41.22 3.02
3449 3548 4.883585 GCCAAGTAGGATGATCATTGTCAA 59.116 41.667 10.14 0.00 41.22 3.18
3450 3549 4.080413 TGCCAAGTAGGATGATCATTGTCA 60.080 41.667 10.14 0.00 41.22 3.58
3451 3550 4.454678 TGCCAAGTAGGATGATCATTGTC 58.545 43.478 10.14 0.00 41.22 3.18
3452 3551 4.508551 TGCCAAGTAGGATGATCATTGT 57.491 40.909 10.14 2.84 41.22 2.71
3453 3552 4.825634 ACATGCCAAGTAGGATGATCATTG 59.174 41.667 10.14 3.58 41.22 2.82
3454 3553 5.057843 ACATGCCAAGTAGGATGATCATT 57.942 39.130 10.14 0.00 41.22 2.57
3455 3554 4.719026 ACATGCCAAGTAGGATGATCAT 57.281 40.909 8.25 8.25 41.22 2.45
3456 3555 4.508551 AACATGCCAAGTAGGATGATCA 57.491 40.909 0.00 0.00 41.22 2.92
3457 3556 5.841957 AAAACATGCCAAGTAGGATGATC 57.158 39.130 0.00 0.00 41.22 2.92
3458 3557 5.829924 CCTAAAACATGCCAAGTAGGATGAT 59.170 40.000 0.00 0.00 41.22 2.45
3459 3558 5.192927 CCTAAAACATGCCAAGTAGGATGA 58.807 41.667 0.00 0.00 41.22 2.92
3460 3559 4.949856 ACCTAAAACATGCCAAGTAGGATG 59.050 41.667 12.82 0.00 41.22 3.51
3461 3560 4.949856 CACCTAAAACATGCCAAGTAGGAT 59.050 41.667 12.82 0.00 41.22 3.24
3462 3561 4.331968 CACCTAAAACATGCCAAGTAGGA 58.668 43.478 12.82 0.00 41.22 2.94
3463 3562 3.443681 CCACCTAAAACATGCCAAGTAGG 59.556 47.826 0.00 0.00 41.84 3.18
3464 3563 4.079253 ACCACCTAAAACATGCCAAGTAG 58.921 43.478 0.00 0.00 0.00 2.57
3465 3564 4.107127 ACCACCTAAAACATGCCAAGTA 57.893 40.909 0.00 0.00 0.00 2.24
3466 3565 2.957474 ACCACCTAAAACATGCCAAGT 58.043 42.857 0.00 0.00 0.00 3.16
3467 3566 5.659440 AATACCACCTAAAACATGCCAAG 57.341 39.130 0.00 0.00 0.00 3.61
3468 3567 5.788450 CAAATACCACCTAAAACATGCCAA 58.212 37.500 0.00 0.00 0.00 4.52
3469 3568 4.322349 GCAAATACCACCTAAAACATGCCA 60.322 41.667 0.00 0.00 0.00 4.92
3470 3569 4.180817 GCAAATACCACCTAAAACATGCC 58.819 43.478 0.00 0.00 0.00 4.40
3471 3570 4.180817 GGCAAATACCACCTAAAACATGC 58.819 43.478 0.00 0.00 0.00 4.06
3472 3571 5.398603 TGGCAAATACCACCTAAAACATG 57.601 39.130 0.00 0.00 33.75 3.21
3489 3588 1.818060 GCTGGTTGTCATATGTGGCAA 59.182 47.619 5.27 5.27 46.98 4.52
3490 3589 1.004628 AGCTGGTTGTCATATGTGGCA 59.995 47.619 1.90 0.00 38.40 4.92
3491 3590 1.402968 CAGCTGGTTGTCATATGTGGC 59.597 52.381 5.57 0.00 0.00 5.01
3492 3591 2.679837 GACAGCTGGTTGTCATATGTGG 59.320 50.000 19.93 0.00 45.32 4.17
3500 3599 0.108585 TTGAGGGACAGCTGGTTGTC 59.891 55.000 19.93 6.99 45.28 3.18
3501 3600 0.773644 ATTGAGGGACAGCTGGTTGT 59.226 50.000 19.93 0.00 0.00 3.32
3502 3601 2.787473 TATTGAGGGACAGCTGGTTG 57.213 50.000 19.93 0.00 0.00 3.77
3503 3602 5.653255 ATTATATTGAGGGACAGCTGGTT 57.347 39.130 19.93 0.00 0.00 3.67
3504 3603 5.132648 TGAATTATATTGAGGGACAGCTGGT 59.867 40.000 19.93 3.31 0.00 4.00
3505 3604 5.624159 TGAATTATATTGAGGGACAGCTGG 58.376 41.667 19.93 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.