Multiple sequence alignment - TraesCS6A01G029700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G029700 chr6A 100.000 4596 0 0 1 4596 15539656 15544251 0.000000e+00 8488.0
1 TraesCS6A01G029700 chr6A 87.224 1041 104 14 2783 3802 15491623 15490591 0.000000e+00 1158.0
2 TraesCS6A01G029700 chr6A 89.345 901 78 12 2782 3671 15457472 15456579 0.000000e+00 1116.0
3 TraesCS6A01G029700 chr6A 97.092 619 18 0 3978 4596 454429989 454429371 0.000000e+00 1044.0
4 TraesCS6A01G029700 chr6A 89.681 659 56 6 1027 1684 15461703 15461056 0.000000e+00 830.0
5 TraesCS6A01G029700 chr6A 85.781 640 77 10 1 628 15504455 15505092 0.000000e+00 665.0
6 TraesCS6A01G029700 chr6D 89.954 1533 82 21 2403 3893 14240874 14242376 0.000000e+00 1912.0
7 TraesCS6A01G029700 chr6D 88.279 1075 79 17 933 1977 14239297 14240354 0.000000e+00 1243.0
8 TraesCS6A01G029700 chr6D 85.632 1211 127 26 2614 3802 14231563 14230378 0.000000e+00 1229.0
9 TraesCS6A01G029700 chr6D 90.850 918 71 9 2783 3691 14202032 14201119 0.000000e+00 1218.0
10 TraesCS6A01G029700 chr6D 89.985 659 57 4 1027 1684 14203539 14202889 0.000000e+00 843.0
11 TraesCS6A01G029700 chr6D 88.619 659 63 9 1027 1684 14232302 14231655 0.000000e+00 791.0
12 TraesCS6A01G029700 chr6D 86.164 636 62 12 3 628 14238692 14239311 0.000000e+00 664.0
13 TraesCS6A01G029700 chr6D 82.533 229 35 4 1993 2220 14240406 14240630 3.630000e-46 196.0
14 TraesCS6A01G029700 chr6D 82.249 169 23 7 148 312 335600667 335600502 6.200000e-29 139.0
15 TraesCS6A01G029700 chr6B 91.503 1224 84 8 2683 3893 26004507 26005723 0.000000e+00 1666.0
16 TraesCS6A01G029700 chr6B 91.251 1223 81 9 2684 3893 26121122 26119913 0.000000e+00 1642.0
17 TraesCS6A01G029700 chr6B 89.485 913 83 10 2783 3688 25972511 25971605 0.000000e+00 1142.0
18 TraesCS6A01G029700 chr6B 92.725 756 48 3 933 1684 26001679 26002431 0.000000e+00 1085.0
19 TraesCS6A01G029700 chr6B 97.092 619 18 0 3978 4596 482526840 482527458 0.000000e+00 1044.0
20 TraesCS6A01G029700 chr6B 89.833 659 58 5 1027 1684 25976155 25975505 0.000000e+00 837.0
21 TraesCS6A01G029700 chr6B 86.427 641 69 12 3 628 26001056 26001693 0.000000e+00 686.0
22 TraesCS6A01G029700 chr6B 94.737 209 9 2 421 628 26123895 26123688 1.590000e-84 324.0
23 TraesCS6A01G029700 chr6B 100.000 51 0 0 3898 3948 246710257 246710207 1.360000e-15 95.3
24 TraesCS6A01G029700 chr2A 97.512 643 16 0 3954 4596 776399148 776399790 0.000000e+00 1099.0
25 TraesCS6A01G029700 chr2A 97.415 619 16 0 3978 4596 608903947 608903329 0.000000e+00 1055.0
26 TraesCS6A01G029700 chr2A 95.820 311 12 1 625 934 585703956 585704266 6.860000e-138 501.0
27 TraesCS6A01G029700 chr2A 82.803 157 26 1 148 303 449263677 449263521 6.200000e-29 139.0
28 TraesCS6A01G029700 chr2A 100.000 70 0 0 3899 3968 776399111 776399180 3.730000e-26 130.0
29 TraesCS6A01G029700 chr2A 100.000 50 0 0 3899 3948 349714296 349714345 4.900000e-15 93.5
30 TraesCS6A01G029700 chr7A 97.254 619 17 0 3978 4596 84756745 84756127 0.000000e+00 1050.0
31 TraesCS6A01G029700 chr7A 96.393 305 11 0 627 931 633395990 633396294 1.910000e-138 503.0
32 TraesCS6A01G029700 chr7A 91.304 46 3 1 17 62 736283842 736283886 1.380000e-05 62.1
33 TraesCS6A01G029700 chr4A 97.254 619 17 0 3978 4596 607376215 607376833 0.000000e+00 1050.0
34 TraesCS6A01G029700 chr4A 93.808 323 19 1 621 943 460894362 460894041 6.910000e-133 484.0
35 TraesCS6A01G029700 chr4A 96.154 104 3 1 3889 3992 712835409 712835307 7.910000e-38 169.0
36 TraesCS6A01G029700 chr7B 97.092 619 18 0 3978 4596 2222555 2223173 0.000000e+00 1044.0
37 TraesCS6A01G029700 chr7B 97.092 619 18 0 3978 4596 412900856 412900238 0.000000e+00 1044.0
38 TraesCS6A01G029700 chr7B 96.091 307 12 0 629 935 717329211 717328905 6.860000e-138 501.0
39 TraesCS6A01G029700 chr7B 95.513 312 12 2 629 939 633031179 633030869 8.880000e-137 497.0
40 TraesCS6A01G029700 chr1B 97.092 619 18 0 3978 4596 120395671 120395053 0.000000e+00 1044.0
41 TraesCS6A01G029700 chr1B 87.940 796 87 6 2823 3616 465388665 465387877 0.000000e+00 929.0
42 TraesCS6A01G029700 chr1B 83.234 668 96 7 1033 1687 465389392 465388728 2.370000e-167 599.0
43 TraesCS6A01G029700 chr1D 87.829 797 86 8 2823 3616 345375724 345376512 0.000000e+00 924.0
44 TraesCS6A01G029700 chr1D 84.554 628 85 5 1066 1684 345375032 345375656 3.040000e-171 612.0
45 TraesCS6A01G029700 chr1A 84.395 628 86 6 1066 1684 445502540 445503164 1.410000e-169 606.0
46 TraesCS6A01G029700 chr1A 96.129 310 10 2 628 935 537536745 537536436 5.310000e-139 505.0
47 TraesCS6A01G029700 chr2B 96.104 308 11 1 629 935 77779291 77779598 6.860000e-138 501.0
48 TraesCS6A01G029700 chr4B 95.793 309 13 0 629 937 40215532 40215224 2.470000e-137 499.0
49 TraesCS6A01G029700 chr4B 100.000 50 0 0 3899 3948 351600203 351600154 4.900000e-15 93.5
50 TraesCS6A01G029700 chr5B 94.937 316 14 2 619 932 674376787 674376472 1.150000e-135 494.0
51 TraesCS6A01G029700 chr5B 81.967 183 28 2 124 304 541172618 541172797 2.860000e-32 150.0
52 TraesCS6A01G029700 chr4D 85.443 158 20 3 148 303 499253702 499253858 1.320000e-35 161.0
53 TraesCS6A01G029700 chr7D 83.750 160 18 5 151 303 524328060 524327902 1.330000e-30 145.0
54 TraesCS6A01G029700 chr3A 83.439 157 25 1 148 303 725469543 725469699 1.330000e-30 145.0
55 TraesCS6A01G029700 chr3A 93.220 59 2 1 3888 3946 186708904 186708960 8.190000e-13 86.1
56 TraesCS6A01G029700 chrUn 100.000 50 0 0 3897 3946 328495 328544 4.900000e-15 93.5
57 TraesCS6A01G029700 chr5A 100.000 49 0 0 3898 3946 663329450 663329498 1.760000e-14 91.6
58 TraesCS6A01G029700 chr5A 96.296 54 1 1 3893 3946 591462571 591462519 2.280000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G029700 chr6A 15539656 15544251 4595 False 8488.000000 8488 100.000000 1 4596 1 chr6A.!!$F2 4595
1 TraesCS6A01G029700 chr6A 15490591 15491623 1032 True 1158.000000 1158 87.224000 2783 3802 1 chr6A.!!$R1 1019
2 TraesCS6A01G029700 chr6A 454429371 454429989 618 True 1044.000000 1044 97.092000 3978 4596 1 chr6A.!!$R2 618
3 TraesCS6A01G029700 chr6A 15456579 15461703 5124 True 973.000000 1116 89.513000 1027 3671 2 chr6A.!!$R3 2644
4 TraesCS6A01G029700 chr6A 15504455 15505092 637 False 665.000000 665 85.781000 1 628 1 chr6A.!!$F1 627
5 TraesCS6A01G029700 chr6D 14201119 14203539 2420 True 1030.500000 1218 90.417500 1027 3691 2 chr6D.!!$R2 2664
6 TraesCS6A01G029700 chr6D 14230378 14232302 1924 True 1010.000000 1229 87.125500 1027 3802 2 chr6D.!!$R3 2775
7 TraesCS6A01G029700 chr6D 14238692 14242376 3684 False 1003.750000 1912 86.732500 3 3893 4 chr6D.!!$F1 3890
8 TraesCS6A01G029700 chr6B 26001056 26005723 4667 False 1145.666667 1666 90.218333 3 3893 3 chr6B.!!$F2 3890
9 TraesCS6A01G029700 chr6B 482526840 482527458 618 False 1044.000000 1044 97.092000 3978 4596 1 chr6B.!!$F1 618
10 TraesCS6A01G029700 chr6B 25971605 25976155 4550 True 989.500000 1142 89.659000 1027 3688 2 chr6B.!!$R2 2661
11 TraesCS6A01G029700 chr6B 26119913 26123895 3982 True 983.000000 1642 92.994000 421 3893 2 chr6B.!!$R3 3472
12 TraesCS6A01G029700 chr2A 608903329 608903947 618 True 1055.000000 1055 97.415000 3978 4596 1 chr2A.!!$R2 618
13 TraesCS6A01G029700 chr2A 776399111 776399790 679 False 614.500000 1099 98.756000 3899 4596 2 chr2A.!!$F3 697
14 TraesCS6A01G029700 chr7A 84756127 84756745 618 True 1050.000000 1050 97.254000 3978 4596 1 chr7A.!!$R1 618
15 TraesCS6A01G029700 chr4A 607376215 607376833 618 False 1050.000000 1050 97.254000 3978 4596 1 chr4A.!!$F1 618
16 TraesCS6A01G029700 chr7B 2222555 2223173 618 False 1044.000000 1044 97.092000 3978 4596 1 chr7B.!!$F1 618
17 TraesCS6A01G029700 chr7B 412900238 412900856 618 True 1044.000000 1044 97.092000 3978 4596 1 chr7B.!!$R1 618
18 TraesCS6A01G029700 chr1B 120395053 120395671 618 True 1044.000000 1044 97.092000 3978 4596 1 chr1B.!!$R1 618
19 TraesCS6A01G029700 chr1B 465387877 465389392 1515 True 764.000000 929 85.587000 1033 3616 2 chr1B.!!$R2 2583
20 TraesCS6A01G029700 chr1D 345375032 345376512 1480 False 768.000000 924 86.191500 1066 3616 2 chr1D.!!$F1 2550
21 TraesCS6A01G029700 chr1A 445502540 445503164 624 False 606.000000 606 84.395000 1066 1684 1 chr1A.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 723 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.0 0.0 4.73 F
2211 4112 0.034670 AAGAAGGAGGCATGGCAGAC 60.035 55.0 22.64 10.7 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2261 4830 0.117340 ACAGGACAGCTAACCCCTCT 59.883 55.0 4.96 0.0 0.0 3.69 R
3843 7958 0.728542 GGCGTAATGTTTACACCGGG 59.271 55.0 6.32 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.778993 AAACTTTCGATTTATTCATCATCTGTG 57.221 29.630 0.00 0.00 0.00 3.66
66 67 6.660521 TCATCATCTGTGAAGGCAGTAAAAAT 59.339 34.615 0.00 0.00 38.01 1.82
68 69 7.377766 TCATCTGTGAAGGCAGTAAAAATAC 57.622 36.000 0.00 0.00 37.70 1.89
75 76 7.120579 TGTGAAGGCAGTAAAAATACCACTATG 59.879 37.037 0.00 0.00 0.00 2.23
113 114 0.100861 GTCTGTAGACCACCTAGCGC 59.899 60.000 0.00 0.00 39.07 5.92
114 115 1.064296 CTGTAGACCACCTAGCGCG 59.936 63.158 0.00 0.00 0.00 6.86
115 116 1.374343 CTGTAGACCACCTAGCGCGA 61.374 60.000 12.10 0.00 0.00 5.87
116 117 0.750546 TGTAGACCACCTAGCGCGAT 60.751 55.000 12.10 5.99 0.00 4.58
117 118 0.317938 GTAGACCACCTAGCGCGATG 60.318 60.000 12.10 0.00 0.00 3.84
118 119 0.464916 TAGACCACCTAGCGCGATGA 60.465 55.000 12.10 0.00 0.00 2.92
122 132 1.299468 CACCTAGCGCGATGAGGAC 60.299 63.158 23.20 0.00 34.24 3.85
159 169 4.974438 TGGCGTCACCCCTCCCTT 62.974 66.667 0.00 0.00 37.83 3.95
162 172 1.988406 GCGTCACCCCTCCCTTACT 60.988 63.158 0.00 0.00 0.00 2.24
163 173 1.898154 CGTCACCCCTCCCTTACTG 59.102 63.158 0.00 0.00 0.00 2.74
176 186 2.025887 CCCTTACTGGAGCAGGACAAAT 60.026 50.000 0.00 0.00 38.35 2.32
193 203 9.214957 CAGGACAAATATTGTTGTAGTAGACAA 57.785 33.333 0.00 2.49 45.52 3.18
239 250 1.264749 TAGGACCAGCGCACCAGAAT 61.265 55.000 11.47 0.00 0.00 2.40
242 253 1.448985 GACCAGCGCACCAGAATAAA 58.551 50.000 11.47 0.00 0.00 1.40
249 260 1.199097 CGCACCAGAATAAAAACCGCT 59.801 47.619 0.00 0.00 0.00 5.52
261 272 0.605319 AAACCGCTGCCGATGAAGAA 60.605 50.000 0.00 0.00 36.29 2.52
274 285 4.166523 CGATGAAGAAAAGTGTAGAGCGA 58.833 43.478 0.00 0.00 0.00 4.93
306 317 4.887748 ACCTGAAGACACATGAACACTAG 58.112 43.478 0.00 0.00 0.00 2.57
338 352 1.608025 GGAGACAAATCAGCGGTGACA 60.608 52.381 21.19 0.00 34.75 3.58
388 403 0.476771 GTGTGGGGAGGAGGTGAAAA 59.523 55.000 0.00 0.00 0.00 2.29
415 430 1.454539 CCCGTGAACCTTCCAACCT 59.545 57.895 0.00 0.00 0.00 3.50
491 506 2.747446 GCGTGTTACCATGGAGTGAAAT 59.253 45.455 21.47 0.00 0.00 2.17
627 643 6.888430 CAACTTTTGCAAGTAACGTATCTCT 58.112 36.000 0.00 0.00 42.89 3.10
628 644 6.467723 ACTTTTGCAAGTAACGTATCTCTG 57.532 37.500 0.00 0.00 41.81 3.35
629 645 4.921470 TTTGCAAGTAACGTATCTCTGC 57.079 40.909 0.00 4.63 0.00 4.26
630 646 2.526077 TGCAAGTAACGTATCTCTGCG 58.474 47.619 0.00 0.00 36.47 5.18
631 647 2.162809 TGCAAGTAACGTATCTCTGCGA 59.837 45.455 0.00 0.00 34.31 5.10
632 648 3.176708 GCAAGTAACGTATCTCTGCGAA 58.823 45.455 0.00 0.00 34.31 4.70
633 649 3.797256 GCAAGTAACGTATCTCTGCGAAT 59.203 43.478 0.00 0.00 34.31 3.34
634 650 4.085517 GCAAGTAACGTATCTCTGCGAATC 60.086 45.833 0.00 0.00 34.31 2.52
635 651 4.895224 AGTAACGTATCTCTGCGAATCA 57.105 40.909 0.00 0.00 34.31 2.57
636 652 5.244785 AGTAACGTATCTCTGCGAATCAA 57.755 39.130 0.00 0.00 34.31 2.57
637 653 5.035443 AGTAACGTATCTCTGCGAATCAAC 58.965 41.667 0.00 0.00 34.31 3.18
638 654 2.810650 ACGTATCTCTGCGAATCAACC 58.189 47.619 0.00 0.00 34.31 3.77
639 655 2.427453 ACGTATCTCTGCGAATCAACCT 59.573 45.455 0.00 0.00 34.31 3.50
640 656 2.791560 CGTATCTCTGCGAATCAACCTG 59.208 50.000 0.00 0.00 31.48 4.00
641 657 3.735208 CGTATCTCTGCGAATCAACCTGT 60.735 47.826 0.00 0.00 31.48 4.00
642 658 2.084610 TCTCTGCGAATCAACCTGTG 57.915 50.000 0.00 0.00 0.00 3.66
643 659 1.081892 CTCTGCGAATCAACCTGTGG 58.918 55.000 0.00 0.00 0.00 4.17
644 660 0.396435 TCTGCGAATCAACCTGTGGT 59.604 50.000 0.00 0.00 37.65 4.16
654 670 2.525105 AACCTGTGGTTGAGTTGGTT 57.475 45.000 0.71 0.00 45.07 3.67
655 671 3.655615 AACCTGTGGTTGAGTTGGTTA 57.344 42.857 0.71 0.00 45.07 2.85
656 672 3.208747 ACCTGTGGTTGAGTTGGTTAG 57.791 47.619 0.00 0.00 27.29 2.34
657 673 2.158667 ACCTGTGGTTGAGTTGGTTAGG 60.159 50.000 0.00 0.00 27.29 2.69
658 674 2.158667 CCTGTGGTTGAGTTGGTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
659 675 2.878406 CTGTGGTTGAGTTGGTTAGGTG 59.122 50.000 0.00 0.00 0.00 4.00
660 676 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
661 677 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
662 678 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
663 679 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
664 680 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
665 681 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
666 682 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
667 683 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
668 684 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
669 685 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
670 686 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
671 687 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
672 688 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
673 689 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
674 690 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
675 691 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
685 701 3.882102 TGGTATCCCCAATTCATCAGG 57.118 47.619 0.00 0.00 41.50 3.86
686 702 2.446666 TGGTATCCCCAATTCATCAGGG 59.553 50.000 0.00 0.00 41.50 4.45
687 703 2.447047 GGTATCCCCAATTCATCAGGGT 59.553 50.000 0.00 0.00 41.16 4.34
688 704 3.117131 GGTATCCCCAATTCATCAGGGTT 60.117 47.826 0.00 0.00 41.16 4.11
689 705 2.826674 TCCCCAATTCATCAGGGTTC 57.173 50.000 0.00 0.00 41.16 3.62
690 706 1.999295 TCCCCAATTCATCAGGGTTCA 59.001 47.619 0.00 0.00 41.16 3.18
691 707 2.381618 TCCCCAATTCATCAGGGTTCAA 59.618 45.455 0.00 0.00 41.16 2.69
692 708 3.172339 CCCCAATTCATCAGGGTTCAAA 58.828 45.455 0.00 0.00 41.16 2.69
693 709 3.776417 CCCCAATTCATCAGGGTTCAAAT 59.224 43.478 0.00 0.00 41.16 2.32
694 710 4.141869 CCCCAATTCATCAGGGTTCAAATC 60.142 45.833 0.00 0.00 41.16 2.17
695 711 4.141869 CCCAATTCATCAGGGTTCAAATCC 60.142 45.833 0.00 0.00 37.81 3.01
696 712 4.713321 CCAATTCATCAGGGTTCAAATCCT 59.287 41.667 0.00 0.00 41.23 3.24
701 717 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
702 718 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
703 719 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
704 720 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
705 721 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
706 722 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
707 723 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
708 724 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
709 725 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
710 726 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
711 727 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
712 728 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
713 729 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
714 730 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
715 731 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
716 732 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
717 733 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
718 734 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
719 735 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
720 736 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
721 737 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
722 738 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
723 739 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
724 740 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
725 741 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
726 742 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
727 743 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
728 744 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
736 752 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
737 753 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
738 754 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
739 755 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
740 756 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
741 757 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
742 758 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
743 759 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
754 770 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
755 771 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
756 772 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
757 773 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
758 774 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
759 775 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
760 776 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
761 777 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
762 778 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
763 779 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
764 780 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
765 781 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
766 782 0.112606 TCAGTGGGAGGAGACGTTCT 59.887 55.000 0.00 0.00 0.00 3.01
767 783 0.528470 CAGTGGGAGGAGACGTTCTC 59.472 60.000 0.00 0.00 42.66 2.87
768 784 0.961358 AGTGGGAGGAGACGTTCTCG 60.961 60.000 0.00 0.00 44.28 4.04
788 804 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
791 807 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
793 809 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
796 812 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
797 813 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
798 814 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
799 815 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
800 816 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
801 817 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
802 818 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
803 819 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
804 820 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
805 821 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
806 822 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
807 823 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
808 824 4.817517 ACGGTGACTTCGTAAATCTCAAT 58.182 39.130 0.00 0.00 39.22 2.57
809 825 5.957798 ACGGTGACTTCGTAAATCTCAATA 58.042 37.500 0.00 0.00 39.22 1.90
810 826 6.570692 ACGGTGACTTCGTAAATCTCAATAT 58.429 36.000 0.00 0.00 39.22 1.28
811 827 6.475727 ACGGTGACTTCGTAAATCTCAATATG 59.524 38.462 0.00 0.00 39.22 1.78
812 828 6.695713 CGGTGACTTCGTAAATCTCAATATGA 59.304 38.462 0.00 0.00 0.00 2.15
813 829 7.382488 CGGTGACTTCGTAAATCTCAATATGAT 59.618 37.037 0.00 0.00 0.00 2.45
814 830 9.692749 GGTGACTTCGTAAATCTCAATATGATA 57.307 33.333 0.00 0.00 0.00 2.15
818 834 9.155975 ACTTCGTAAATCTCAATATGATATGCC 57.844 33.333 0.00 0.00 0.00 4.40
819 835 7.755582 TCGTAAATCTCAATATGATATGCCG 57.244 36.000 0.00 0.00 0.00 5.69
820 836 6.756542 TCGTAAATCTCAATATGATATGCCGG 59.243 38.462 0.00 0.00 0.00 6.13
821 837 5.824904 AAATCTCAATATGATATGCCGGC 57.175 39.130 22.73 22.73 0.00 6.13
822 838 4.767578 ATCTCAATATGATATGCCGGCT 57.232 40.909 29.70 15.76 0.00 5.52
823 839 4.128925 TCTCAATATGATATGCCGGCTC 57.871 45.455 29.70 17.89 0.00 4.70
824 840 3.515104 TCTCAATATGATATGCCGGCTCA 59.485 43.478 29.70 23.34 0.00 4.26
825 841 3.865446 TCAATATGATATGCCGGCTCAG 58.135 45.455 29.70 11.05 0.00 3.35
826 842 3.261643 TCAATATGATATGCCGGCTCAGT 59.738 43.478 29.70 12.87 0.00 3.41
827 843 3.533606 ATATGATATGCCGGCTCAGTC 57.466 47.619 29.70 19.55 0.00 3.51
828 844 1.346062 ATGATATGCCGGCTCAGTCT 58.654 50.000 29.70 5.43 0.00 3.24
829 845 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
830 846 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
831 847 1.342819 GATATGCCGGCTCAGTCTCTT 59.657 52.381 29.70 1.60 0.00 2.85
832 848 0.461548 TATGCCGGCTCAGTCTCTTG 59.538 55.000 29.70 0.00 0.00 3.02
833 849 2.125350 GCCGGCTCAGTCTCTTGG 60.125 66.667 22.15 0.00 0.00 3.61
834 850 2.650116 GCCGGCTCAGTCTCTTGGA 61.650 63.158 22.15 0.00 0.00 3.53
835 851 1.515020 CCGGCTCAGTCTCTTGGAG 59.485 63.158 0.00 0.00 0.00 3.86
836 852 1.515020 CGGCTCAGTCTCTTGGAGG 59.485 63.158 0.00 0.00 0.00 4.30
837 853 1.254284 CGGCTCAGTCTCTTGGAGGT 61.254 60.000 0.00 0.00 0.00 3.85
838 854 0.248843 GGCTCAGTCTCTTGGAGGTG 59.751 60.000 0.00 0.00 0.00 4.00
839 855 0.390998 GCTCAGTCTCTTGGAGGTGC 60.391 60.000 0.00 0.00 0.00 5.01
840 856 1.265236 CTCAGTCTCTTGGAGGTGCT 58.735 55.000 0.00 0.00 0.00 4.40
841 857 1.204467 CTCAGTCTCTTGGAGGTGCTC 59.796 57.143 0.00 0.00 0.00 4.26
842 858 0.972134 CAGTCTCTTGGAGGTGCTCA 59.028 55.000 0.00 0.00 31.08 4.26
843 859 1.554160 CAGTCTCTTGGAGGTGCTCAT 59.446 52.381 0.00 0.00 31.08 2.90
844 860 2.762887 CAGTCTCTTGGAGGTGCTCATA 59.237 50.000 0.00 0.00 31.08 2.15
845 861 3.030291 AGTCTCTTGGAGGTGCTCATAG 58.970 50.000 0.00 0.00 31.08 2.23
846 862 2.102252 GTCTCTTGGAGGTGCTCATAGG 59.898 54.545 0.00 0.00 31.08 2.57
847 863 1.415659 CTCTTGGAGGTGCTCATAGGG 59.584 57.143 0.00 0.00 31.08 3.53
848 864 0.471617 CTTGGAGGTGCTCATAGGGG 59.528 60.000 0.00 0.00 31.08 4.79
849 865 0.253160 TTGGAGGTGCTCATAGGGGT 60.253 55.000 0.00 0.00 31.08 4.95
850 866 0.639943 TGGAGGTGCTCATAGGGGTA 59.360 55.000 0.00 0.00 31.08 3.69
851 867 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
852 868 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
853 869 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
854 870 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
855 871 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
856 872 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
857 873 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
858 874 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
859 875 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
860 876 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
861 877 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
862 878 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
863 879 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
864 880 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
865 881 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
866 882 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
869 885 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
870 886 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
871 887 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
872 888 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
873 889 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
874 890 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
875 891 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
876 892 0.179225 GCGTGTGTGCGTTCATAAGG 60.179 55.000 0.00 0.00 0.00 2.69
877 893 0.442310 CGTGTGTGCGTTCATAAGGG 59.558 55.000 0.00 0.00 0.00 3.95
878 894 1.519408 GTGTGTGCGTTCATAAGGGT 58.481 50.000 0.00 0.00 0.00 4.34
879 895 1.196808 GTGTGTGCGTTCATAAGGGTG 59.803 52.381 0.00 0.00 0.00 4.61
880 896 1.070914 TGTGTGCGTTCATAAGGGTGA 59.929 47.619 0.00 0.00 0.00 4.02
881 897 1.732259 GTGTGCGTTCATAAGGGTGAG 59.268 52.381 0.00 0.00 0.00 3.51
882 898 1.346395 TGTGCGTTCATAAGGGTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
883 899 1.732259 GTGCGTTCATAAGGGTGAGTG 59.268 52.381 0.00 0.00 0.00 3.51
884 900 1.346395 TGCGTTCATAAGGGTGAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
885 901 2.563620 TGCGTTCATAAGGGTGAGTGTA 59.436 45.455 0.00 0.00 0.00 2.90
886 902 3.196901 TGCGTTCATAAGGGTGAGTGTAT 59.803 43.478 0.00 0.00 0.00 2.29
887 903 3.555956 GCGTTCATAAGGGTGAGTGTATG 59.444 47.826 0.00 0.00 0.00 2.39
888 904 3.555956 CGTTCATAAGGGTGAGTGTATGC 59.444 47.826 0.00 0.00 0.00 3.14
889 905 3.452755 TCATAAGGGTGAGTGTATGCG 57.547 47.619 0.00 0.00 0.00 4.73
890 906 2.764010 TCATAAGGGTGAGTGTATGCGT 59.236 45.455 0.00 0.00 0.00 5.24
891 907 2.665649 TAAGGGTGAGTGTATGCGTG 57.334 50.000 0.00 0.00 0.00 5.34
892 908 0.685097 AAGGGTGAGTGTATGCGTGT 59.315 50.000 0.00 0.00 0.00 4.49
893 909 0.037326 AGGGTGAGTGTATGCGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
894 910 0.320421 GGGTGAGTGTATGCGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
895 911 1.067425 GGGTGAGTGTATGCGTGTGTA 60.067 52.381 0.00 0.00 0.00 2.90
896 912 2.418197 GGGTGAGTGTATGCGTGTGTAT 60.418 50.000 0.00 0.00 0.00 2.29
897 913 3.181484 GGGTGAGTGTATGCGTGTGTATA 60.181 47.826 0.00 0.00 0.00 1.47
898 914 4.500887 GGGTGAGTGTATGCGTGTGTATAT 60.501 45.833 0.00 0.00 0.00 0.86
899 915 4.444388 GGTGAGTGTATGCGTGTGTATATG 59.556 45.833 0.00 0.00 0.00 1.78
900 916 5.278604 GTGAGTGTATGCGTGTGTATATGA 58.721 41.667 0.00 0.00 0.00 2.15
901 917 5.399596 GTGAGTGTATGCGTGTGTATATGAG 59.600 44.000 0.00 0.00 0.00 2.90
902 918 4.299155 AGTGTATGCGTGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
903 919 4.048504 GTGTATGCGTGTGTATATGAGCA 58.951 43.478 0.00 0.00 39.02 4.26
904 920 4.048504 TGTATGCGTGTGTATATGAGCAC 58.951 43.478 0.00 0.00 37.44 4.40
905 921 2.959507 TGCGTGTGTATATGAGCACT 57.040 45.000 7.90 0.00 36.63 4.40
906 922 3.245518 TGCGTGTGTATATGAGCACTT 57.754 42.857 7.90 0.00 36.63 3.16
907 923 2.929398 TGCGTGTGTATATGAGCACTTG 59.071 45.455 7.90 3.28 36.63 3.16
908 924 2.930040 GCGTGTGTATATGAGCACTTGT 59.070 45.455 7.90 0.00 36.63 3.16
909 925 3.242091 GCGTGTGTATATGAGCACTTGTG 60.242 47.826 0.00 0.00 36.63 3.33
910 926 3.926527 CGTGTGTATATGAGCACTTGTGT 59.073 43.478 2.61 0.00 36.63 3.72
911 927 4.031765 CGTGTGTATATGAGCACTTGTGTC 59.968 45.833 2.61 0.64 36.63 3.67
912 928 5.171476 GTGTGTATATGAGCACTTGTGTCT 58.829 41.667 2.61 0.67 36.63 3.41
913 929 5.062683 GTGTGTATATGAGCACTTGTGTCTG 59.937 44.000 2.61 0.00 36.63 3.51
914 930 5.171476 GTGTATATGAGCACTTGTGTCTGT 58.829 41.667 2.61 0.00 33.22 3.41
915 931 6.071616 TGTGTATATGAGCACTTGTGTCTGTA 60.072 38.462 2.61 0.00 36.63 2.74
916 932 6.253727 GTGTATATGAGCACTTGTGTCTGTAC 59.746 42.308 2.61 0.00 33.22 2.90
917 933 5.667539 ATATGAGCACTTGTGTCTGTACT 57.332 39.130 2.61 0.00 0.00 2.73
918 934 3.097877 TGAGCACTTGTGTCTGTACTG 57.902 47.619 2.61 0.00 0.00 2.74
919 935 2.693074 TGAGCACTTGTGTCTGTACTGA 59.307 45.455 0.00 0.00 0.00 3.41
920 936 3.321968 TGAGCACTTGTGTCTGTACTGAT 59.678 43.478 5.69 0.00 0.00 2.90
921 937 3.657634 AGCACTTGTGTCTGTACTGATG 58.342 45.455 5.69 0.63 0.00 3.07
922 938 2.158449 GCACTTGTGTCTGTACTGATGC 59.842 50.000 5.69 6.84 0.00 3.91
923 939 3.657634 CACTTGTGTCTGTACTGATGCT 58.342 45.455 5.69 0.00 0.00 3.79
924 940 4.809673 CACTTGTGTCTGTACTGATGCTA 58.190 43.478 5.69 0.00 0.00 3.49
925 941 5.230182 CACTTGTGTCTGTACTGATGCTAA 58.770 41.667 5.69 0.07 0.00 3.09
926 942 5.696270 CACTTGTGTCTGTACTGATGCTAAA 59.304 40.000 5.69 0.00 0.00 1.85
927 943 6.202762 CACTTGTGTCTGTACTGATGCTAAAA 59.797 38.462 5.69 0.00 0.00 1.52
928 944 6.765989 ACTTGTGTCTGTACTGATGCTAAAAA 59.234 34.615 5.69 0.00 0.00 1.94
964 984 9.603298 CGTATCTCTCTACGTAGATATAGCTAG 57.397 40.741 24.85 11.23 39.63 3.42
966 986 6.808829 TCTCTCTACGTAGATATAGCTAGCC 58.191 44.000 24.85 0.00 0.00 3.93
967 987 5.916318 TCTCTACGTAGATATAGCTAGCCC 58.084 45.833 24.85 0.00 0.00 5.19
968 988 5.662208 TCTCTACGTAGATATAGCTAGCCCT 59.338 44.000 24.85 0.92 0.00 5.19
995 1015 0.552848 ATCGGCCTCCACAATTCCAT 59.447 50.000 0.00 0.00 0.00 3.41
997 1017 1.774254 TCGGCCTCCACAATTCCATAT 59.226 47.619 0.00 0.00 0.00 1.78
1005 1025 3.898741 TCCACAATTCCATATGCATGCAT 59.101 39.130 33.92 33.92 40.19 3.96
1017 1037 7.342799 TCCATATGCATGCATAGATCAGTACTA 59.657 37.037 36.05 17.80 41.51 1.82
1018 1038 8.148999 CCATATGCATGCATAGATCAGTACTAT 58.851 37.037 36.05 19.07 41.51 2.12
1024 1044 7.362834 GCATGCATAGATCAGTACTATCTGACT 60.363 40.741 14.21 7.05 45.40 3.41
1025 1045 7.446001 TGCATAGATCAGTACTATCTGACTG 57.554 40.000 17.87 14.38 45.40 3.51
1073 1108 8.906636 ATATCTTGCATAAATCAATCAATCGC 57.093 30.769 0.00 0.00 0.00 4.58
1418 1453 0.108992 GCGTACATGGACCTCGACAA 60.109 55.000 1.43 0.00 0.00 3.18
1668 1721 1.606737 AAGCTCGTTGAGGTTGAGAGC 60.607 52.381 10.17 7.58 46.56 4.09
1817 3024 9.571810 TTTGAAATATGACATGCAGTAATTCAC 57.428 29.630 0.00 0.00 0.00 3.18
1823 3030 6.367686 TGACATGCAGTAATTCACATCATC 57.632 37.500 0.00 0.00 0.00 2.92
1863 3170 6.644592 TGCAATAATAGTTTTGTTGTGAAGGC 59.355 34.615 5.08 0.00 0.00 4.35
1865 3172 4.600692 AATAGTTTTGTTGTGAAGGCCC 57.399 40.909 0.00 0.00 0.00 5.80
1883 3190 3.078097 GCCCCGTTGCCAAAAATTTAAT 58.922 40.909 0.00 0.00 0.00 1.40
1887 3194 6.676700 GCCCCGTTGCCAAAAATTTAATTATG 60.677 38.462 0.00 0.00 0.00 1.90
1915 3223 1.845791 TGGGATGCTAAATCTCAGGCA 59.154 47.619 0.00 0.00 39.06 4.75
1917 3225 3.117398 TGGGATGCTAAATCTCAGGCAAT 60.117 43.478 0.00 0.00 38.21 3.56
1948 3494 7.885399 ACTTAACCAAGTCTCATGCTTTATTCT 59.115 33.333 0.00 0.00 41.25 2.40
1950 3496 5.809001 ACCAAGTCTCATGCTTTATTCTGA 58.191 37.500 0.00 0.00 0.00 3.27
2006 3614 8.816640 TTTTCATTGAAACTTGATTAAGCCTC 57.183 30.769 11.30 0.00 37.43 4.70
2007 3615 6.182039 TCATTGAAACTTGATTAAGCCTCG 57.818 37.500 0.00 0.00 37.43 4.63
2015 3623 2.646930 TGATTAAGCCTCGGTCGACTA 58.353 47.619 16.46 3.17 0.00 2.59
2039 3647 5.930135 AGACTTAGCCACACCCATATAAAG 58.070 41.667 0.00 0.00 0.00 1.85
2040 3648 5.428783 AGACTTAGCCACACCCATATAAAGT 59.571 40.000 0.00 0.00 0.00 2.66
2054 3662 6.466615 CCCATATAAAGTAGGGCACATGGTTA 60.467 42.308 0.00 0.00 33.91 2.85
2057 3665 9.162764 CATATAAAGTAGGGCACATGGTTATAC 57.837 37.037 0.00 0.00 0.00 1.47
2059 3667 6.818281 AAAGTAGGGCACATGGTTATACTA 57.182 37.500 0.00 0.00 0.00 1.82
2061 3669 4.591924 AGTAGGGCACATGGTTATACTACC 59.408 45.833 0.00 0.00 38.73 3.18
2064 3672 4.477213 AGGGCACATGGTTATACTACCTTT 59.523 41.667 0.00 0.00 39.04 3.11
2143 3751 7.398024 AGTAATATGGATTGGAAGGAGTATGC 58.602 38.462 0.00 0.00 0.00 3.14
2145 3753 4.736611 ATGGATTGGAAGGAGTATGCAT 57.263 40.909 3.79 3.79 0.00 3.96
2204 4105 4.102367 GTGATAGAAGGAAGAAGGAGGCAT 59.898 45.833 0.00 0.00 0.00 4.40
2208 4109 1.210204 AGGAAGAAGGAGGCATGGCA 61.210 55.000 22.64 0.00 0.00 4.92
2211 4112 0.034670 AAGAAGGAGGCATGGCAGAC 60.035 55.000 22.64 10.70 0.00 3.51
2234 4135 1.000646 GAGGTCGAGACAGAGGGGT 60.001 63.158 5.55 0.00 0.00 4.95
2238 4139 0.456628 GTCGAGACAGAGGGGTTAGC 59.543 60.000 0.00 0.00 0.00 3.09
2239 4140 0.331954 TCGAGACAGAGGGGTTAGCT 59.668 55.000 0.00 0.00 0.00 3.32
2244 4813 2.043801 AGACAGAGGGGTTAGCTTCTCT 59.956 50.000 0.00 0.00 37.09 3.10
2249 4818 4.019771 CAGAGGGGTTAGCTTCTCTCTTTT 60.020 45.833 10.06 0.00 34.71 2.27
2271 4840 7.996098 TTTTTGAGAATTACAGAGGGGTTAG 57.004 36.000 0.00 0.00 0.00 2.34
2274 4843 4.162320 TGAGAATTACAGAGGGGTTAGCTG 59.838 45.833 0.00 0.00 35.81 4.24
2275 4844 4.104831 AGAATTACAGAGGGGTTAGCTGT 58.895 43.478 0.00 0.00 44.38 4.40
2276 4845 4.162509 AGAATTACAGAGGGGTTAGCTGTC 59.837 45.833 0.00 0.00 41.58 3.51
2277 4846 1.861982 TACAGAGGGGTTAGCTGTCC 58.138 55.000 0.00 0.00 41.58 4.02
2278 4847 0.117340 ACAGAGGGGTTAGCTGTCCT 59.883 55.000 0.00 0.00 38.41 3.85
2280 4849 0.117340 AGAGGGGTTAGCTGTCCTGT 59.883 55.000 0.00 0.00 0.00 4.00
2281 4850 0.250513 GAGGGGTTAGCTGTCCTGTG 59.749 60.000 0.00 0.00 0.00 3.66
2285 4854 2.039348 GGGGTTAGCTGTCCTGTGTTTA 59.961 50.000 0.00 0.00 0.00 2.01
2286 4855 3.308188 GGGGTTAGCTGTCCTGTGTTTAT 60.308 47.826 0.00 0.00 0.00 1.40
2288 4857 4.765339 GGGTTAGCTGTCCTGTGTTTATTT 59.235 41.667 0.00 0.00 0.00 1.40
2289 4858 5.335661 GGGTTAGCTGTCCTGTGTTTATTTG 60.336 44.000 0.00 0.00 0.00 2.32
2290 4859 3.923017 AGCTGTCCTGTGTTTATTTGC 57.077 42.857 0.00 0.00 0.00 3.68
2291 4860 3.490348 AGCTGTCCTGTGTTTATTTGCT 58.510 40.909 0.00 0.00 0.00 3.91
2296 4983 2.819608 TCCTGTGTTTATTTGCTCCTGC 59.180 45.455 0.00 0.00 40.20 4.85
2308 4995 0.529378 GCTCCTGCAACCAAATGAGG 59.471 55.000 0.00 0.00 39.41 3.86
2316 5003 2.094545 GCAACCAAATGAGGCCTTAGTG 60.095 50.000 6.77 5.28 0.00 2.74
2342 5029 0.815615 CCCACCTGATTTAGAGCGCC 60.816 60.000 2.29 0.00 0.00 6.53
2379 5079 3.057548 CGGCATGGTGAGCTGCAA 61.058 61.111 1.02 0.00 40.18 4.08
2398 5098 1.738474 ATGAGGCCTGCCATCATAGA 58.262 50.000 12.00 0.00 38.92 1.98
2410 5110 2.495084 CATCATAGACGGACGAGAGGA 58.505 52.381 0.00 0.00 0.00 3.71
2413 5113 2.169978 TCATAGACGGACGAGAGGAAGA 59.830 50.000 0.00 0.00 0.00 2.87
2418 5118 1.210967 ACGGACGAGAGGAAGAGAGAT 59.789 52.381 0.00 0.00 0.00 2.75
2419 5119 1.871039 CGGACGAGAGGAAGAGAGATC 59.129 57.143 0.00 0.00 0.00 2.75
2420 5120 1.871039 GGACGAGAGGAAGAGAGATCG 59.129 57.143 0.00 0.00 36.32 3.69
2421 5121 2.484065 GGACGAGAGGAAGAGAGATCGA 60.484 54.545 0.00 0.00 34.46 3.59
2422 5122 3.199677 GACGAGAGGAAGAGAGATCGAA 58.800 50.000 0.00 0.00 34.46 3.71
2423 5123 3.202906 ACGAGAGGAAGAGAGATCGAAG 58.797 50.000 0.00 0.00 34.46 3.79
2491 5227 9.981114 ATTGACTTACCCAAAATAAAGTTTCAG 57.019 29.630 0.00 0.00 32.51 3.02
2515 5261 0.678950 AAAAATGGGTGTGCTTCGGG 59.321 50.000 0.00 0.00 0.00 5.14
2589 5349 8.882415 TGCAATTTTAGTACTACCTACTATGC 57.118 34.615 0.91 7.90 39.07 3.14
2598 5358 1.323412 ACCTACTATGCCGAGCTGAG 58.677 55.000 0.00 0.00 0.00 3.35
2599 5359 1.133761 ACCTACTATGCCGAGCTGAGA 60.134 52.381 0.00 0.00 0.00 3.27
2636 5396 1.523484 GCTTCTCCTGCTAGCTGCC 60.523 63.158 17.23 0.00 42.00 4.85
2637 5397 1.970352 GCTTCTCCTGCTAGCTGCCT 61.970 60.000 17.23 0.00 42.00 4.75
2687 6439 8.744568 TCTCTTTAATTTTGGGCATTTTTGTT 57.255 26.923 0.00 0.00 0.00 2.83
2718 6470 6.978659 GCCCCAGCAAACTTATAATTACTTTC 59.021 38.462 0.00 0.00 39.53 2.62
2769 6637 9.698309 ACTCGTGATGGTTGATTTATCTATAAG 57.302 33.333 0.00 0.00 0.00 1.73
2844 6919 0.179001 TGCATGGATGATGGCCAGAG 60.179 55.000 13.05 0.00 39.11 3.35
2848 6923 1.146930 GGATGATGGCCAGAGCGAA 59.853 57.895 13.05 0.00 41.24 4.70
3031 7106 0.107508 CCATCATCCGGTCAGCAGTT 60.108 55.000 0.00 0.00 0.00 3.16
3570 7645 2.281070 CGACAGCAACAGCCCACT 60.281 61.111 0.00 0.00 0.00 4.00
3600 7675 2.107726 CACCATCTCCCATGTGATCCAT 59.892 50.000 0.00 0.00 0.00 3.41
3637 7723 7.228308 ACTTAATAACTAGTACCTGCTACTCGG 59.772 40.741 0.00 0.00 36.95 4.63
3640 7726 2.220313 CTAGTACCTGCTACTCGGTCC 58.780 57.143 0.00 0.00 36.95 4.46
3643 7729 0.622136 TACCTGCTACTCGGTCCTGA 59.378 55.000 0.00 0.00 34.76 3.86
3659 7749 4.346129 GTCCTGATGCATGAATTCGTTTC 58.654 43.478 2.46 0.00 34.72 2.78
3677 7767 5.350914 TCGTTTCGTTTTCTGTTTGAGGTTA 59.649 36.000 0.00 0.00 0.00 2.85
3678 7768 6.022821 CGTTTCGTTTTCTGTTTGAGGTTAA 58.977 36.000 0.00 0.00 0.00 2.01
3696 7786 5.992829 AGGTTAATGTTGTTGTCGTACATCA 59.007 36.000 0.00 0.00 31.63 3.07
3716 7817 4.556697 TCATCAAGCCTCTGGGTTATCTA 58.443 43.478 0.50 0.00 41.85 1.98
3751 7852 3.484229 GCGAAGATAGCATGTGTTGTGTC 60.484 47.826 0.00 0.00 34.19 3.67
3770 7885 3.120477 TGTCGTGTTTGTGACTTTGTGTC 60.120 43.478 0.00 0.00 45.54 3.67
3818 7933 5.681337 TTGCAATTCTACATGAAACACGA 57.319 34.783 0.00 0.00 38.29 4.35
3821 7936 5.411053 TGCAATTCTACATGAAACACGATCA 59.589 36.000 0.00 0.00 38.29 2.92
3843 7958 0.727398 GCTGAGTATTTGGGCGTGTC 59.273 55.000 0.00 0.00 0.00 3.67
3854 7969 2.319841 GGCGTGTCCCGGTGTAAAC 61.320 63.158 0.00 0.00 36.94 2.01
3876 7992 0.762418 TACGCCCTATGACCAATGGG 59.238 55.000 3.55 0.00 42.41 4.00
3893 8009 0.694444 GGGTCATTCCTCCCCTAGCA 60.694 60.000 0.00 0.00 37.89 3.49
3894 8010 1.213296 GGTCATTCCTCCCCTAGCAA 58.787 55.000 0.00 0.00 0.00 3.91
3895 8011 1.134068 GGTCATTCCTCCCCTAGCAAC 60.134 57.143 0.00 0.00 0.00 4.17
3896 8012 1.559682 GTCATTCCTCCCCTAGCAACA 59.440 52.381 0.00 0.00 0.00 3.33
3897 8013 2.026262 GTCATTCCTCCCCTAGCAACAA 60.026 50.000 0.00 0.00 0.00 2.83
3938 8054 3.372822 CGTTGCCACGGACTAACAAATAT 59.627 43.478 1.68 0.00 43.16 1.28
3939 8055 4.567558 CGTTGCCACGGACTAACAAATATA 59.432 41.667 1.68 0.00 43.16 0.86
3940 8056 5.235616 CGTTGCCACGGACTAACAAATATAT 59.764 40.000 1.68 0.00 43.16 0.86
3941 8057 6.421501 CGTTGCCACGGACTAACAAATATATA 59.578 38.462 1.68 0.00 43.16 0.86
3942 8058 7.117236 CGTTGCCACGGACTAACAAATATATAT 59.883 37.037 1.68 0.00 43.16 0.86
3943 8059 9.426837 GTTGCCACGGACTAACAAATATATATA 57.573 33.333 0.00 0.00 0.00 0.86
4117 8233 1.827344 CTCCATGTCTGAGCTACCACA 59.173 52.381 0.00 0.00 0.00 4.17
4228 8344 6.323996 TGTCCAACTATCATAATCTTCTCCGT 59.676 38.462 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.748402 ACTGCCTTCACAGATGATGAATAA 58.252 37.500 0.00 0.00 40.25 1.40
52 53 7.553044 ACTCATAGTGGTATTTTTACTGCCTTC 59.447 37.037 0.00 0.00 0.00 3.46
68 69 9.622004 CGTAGGTGTAATATTTACTCATAGTGG 57.378 37.037 0.00 0.00 0.00 4.00
75 76 9.875675 CTACAGACGTAGGTGTAATATTTACTC 57.124 37.037 0.00 0.00 41.33 2.59
89 90 2.125773 AGGTGGTCTACAGACGTAGG 57.874 55.000 3.39 0.00 44.56 3.18
93 94 0.377554 CGCTAGGTGGTCTACAGACG 59.622 60.000 3.39 0.00 45.65 4.18
113 114 0.248825 CTTCGGCTCAGTCCTCATCG 60.249 60.000 0.00 0.00 0.00 3.84
114 115 0.103937 CCTTCGGCTCAGTCCTCATC 59.896 60.000 0.00 0.00 0.00 2.92
115 116 0.324738 TCCTTCGGCTCAGTCCTCAT 60.325 55.000 0.00 0.00 0.00 2.90
116 117 0.967887 CTCCTTCGGCTCAGTCCTCA 60.968 60.000 0.00 0.00 0.00 3.86
117 118 1.671901 CCTCCTTCGGCTCAGTCCTC 61.672 65.000 0.00 0.00 0.00 3.71
118 119 1.684049 CCTCCTTCGGCTCAGTCCT 60.684 63.158 0.00 0.00 0.00 3.85
122 132 1.254284 ACTGTCCTCCTTCGGCTCAG 61.254 60.000 0.00 0.00 34.41 3.35
134 144 2.426023 GGTGACGCCAACTGTCCT 59.574 61.111 0.00 0.00 35.46 3.85
136 146 2.668550 GGGGTGACGCCAACTGTC 60.669 66.667 14.36 0.00 39.65 3.51
137 147 3.168528 AGGGGTGACGCCAACTGT 61.169 61.111 21.26 0.00 46.15 3.55
139 149 3.637273 GGAGGGGTGACGCCAACT 61.637 66.667 21.26 4.22 46.15 3.16
144 154 1.988406 AGTAAGGGAGGGGTGACGC 60.988 63.158 0.00 0.00 45.13 5.19
159 169 5.435686 ACAATATTTGTCCTGCTCCAGTA 57.564 39.130 0.00 0.00 40.56 2.74
162 172 4.406456 ACAACAATATTTGTCCTGCTCCA 58.594 39.130 0.00 0.00 44.59 3.86
163 173 5.648092 ACTACAACAATATTTGTCCTGCTCC 59.352 40.000 0.00 0.00 44.59 4.70
193 203 3.933332 GCTTAGCACCACGACTTTCTAAT 59.067 43.478 0.00 0.00 0.00 1.73
195 205 2.353406 GGCTTAGCACCACGACTTTCTA 60.353 50.000 6.53 0.00 0.00 2.10
196 206 1.608283 GGCTTAGCACCACGACTTTCT 60.608 52.381 6.53 0.00 0.00 2.52
239 250 1.466950 CTTCATCGGCAGCGGTTTTTA 59.533 47.619 0.00 0.00 0.00 1.52
242 253 0.605319 TTCTTCATCGGCAGCGGTTT 60.605 50.000 0.00 0.00 0.00 3.27
249 260 4.245660 CTCTACACTTTTCTTCATCGGCA 58.754 43.478 0.00 0.00 0.00 5.69
261 272 3.260884 TGGATCCTTTCGCTCTACACTTT 59.739 43.478 14.23 0.00 0.00 2.66
274 285 3.138283 TGTGTCTTCAGGTTGGATCCTTT 59.862 43.478 14.23 0.00 35.37 3.11
306 317 5.049167 TGATTTGTCTCCAACAATGTTTGC 58.951 37.500 0.00 0.00 46.94 3.68
388 403 2.375014 AGGTTCACGGGGAAATGTTT 57.625 45.000 0.00 0.00 37.23 2.83
398 413 2.781681 ATAGGTTGGAAGGTTCACGG 57.218 50.000 0.00 0.00 0.00 4.94
444 459 7.244886 TGCAGCTTAGTACATGGTCATATAT 57.755 36.000 0.00 0.00 0.00 0.86
463 478 3.262936 TGGTAACACGCATGCAGC 58.737 55.556 19.57 7.88 46.17 5.25
491 506 2.833151 ATCCGGTGCTGGTCCCCTTA 62.833 60.000 0.00 0.00 0.00 2.69
507 522 2.373169 TGCTGGTCCTATTCCATGATCC 59.627 50.000 0.00 0.00 34.26 3.36
511 526 1.884579 GCATGCTGGTCCTATTCCATG 59.115 52.381 11.37 0.00 34.26 3.66
537 552 5.163426 ACAAAAAGAGGTTCATTCATGTGCA 60.163 36.000 0.00 0.00 0.00 4.57
627 643 3.412722 AACCACAGGTTGATTCGCA 57.587 47.368 0.00 0.00 45.07 5.10
636 652 2.158667 CCTAACCAACTCAACCACAGGT 60.159 50.000 0.00 0.00 37.65 4.00
637 653 2.158667 ACCTAACCAACTCAACCACAGG 60.159 50.000 0.00 0.00 0.00 4.00
638 654 2.878406 CACCTAACCAACTCAACCACAG 59.122 50.000 0.00 0.00 0.00 3.66
639 655 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
640 656 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
641 657 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
642 658 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
643 659 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
644 660 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
645 661 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
646 662 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
647 663 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
648 664 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
649 665 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
650 666 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
651 667 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
652 668 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
667 683 3.884037 ACCCTGATGAATTGGGGATAC 57.116 47.619 3.72 0.00 44.97 2.24
668 684 3.790976 TGAACCCTGATGAATTGGGGATA 59.209 43.478 3.72 0.00 44.97 2.59
669 685 2.586838 TGAACCCTGATGAATTGGGGAT 59.413 45.455 3.72 0.00 44.97 3.85
670 686 1.999295 TGAACCCTGATGAATTGGGGA 59.001 47.619 3.72 0.00 44.97 4.81
671 687 2.530460 TGAACCCTGATGAATTGGGG 57.470 50.000 3.05 0.00 44.97 4.96
672 688 4.141869 GGATTTGAACCCTGATGAATTGGG 60.142 45.833 0.00 0.00 46.07 4.12
673 689 4.713321 AGGATTTGAACCCTGATGAATTGG 59.287 41.667 0.00 0.00 0.00 3.16
674 690 5.927281 AGGATTTGAACCCTGATGAATTG 57.073 39.130 0.00 0.00 0.00 2.32
675 691 7.758873 CACCAGGATTTGAACCCTGATGAATT 61.759 42.308 5.67 0.00 45.07 2.17
676 692 6.333809 CACCAGGATTTGAACCCTGATGAAT 61.334 44.000 5.67 0.00 45.07 2.57
677 693 5.053249 CACCAGGATTTGAACCCTGATGAA 61.053 45.833 5.67 0.00 45.07 2.57
678 694 3.561960 CACCAGGATTTGAACCCTGATGA 60.562 47.826 5.67 0.00 45.07 2.92
683 699 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
684 700 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
685 701 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
686 702 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
687 703 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
688 704 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
689 705 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
690 706 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
691 707 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
692 708 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
693 709 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
694 710 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
695 711 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
696 712 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
697 713 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
698 714 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
699 715 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
700 716 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
701 717 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
702 718 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
712 728 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
713 729 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
714 730 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
715 731 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
716 732 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
717 733 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
718 734 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
719 735 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
720 736 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
721 737 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
722 738 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
723 739 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
724 740 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
725 741 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
726 742 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
737 753 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
738 754 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
739 755 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
740 756 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
741 757 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
742 758 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
743 759 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
744 760 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
745 761 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
746 762 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
747 763 0.112606 AGAACGTCTCCTCCCACTGA 59.887 55.000 0.00 0.00 0.00 3.41
748 764 0.528470 GAGAACGTCTCCTCCCACTG 59.472 60.000 0.00 0.00 37.55 3.66
749 765 0.961358 CGAGAACGTCTCCTCCCACT 60.961 60.000 8.73 0.00 40.34 4.00
750 766 1.507174 CGAGAACGTCTCCTCCCAC 59.493 63.158 8.73 0.00 40.34 4.61
751 767 3.998156 CGAGAACGTCTCCTCCCA 58.002 61.111 8.73 0.00 40.34 4.37
770 786 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
771 787 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
784 800 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
785 801 5.375417 TTGAGATTTACGAAGTCACCGTA 57.625 39.130 0.00 0.00 43.93 4.02
786 802 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
787 803 6.695713 TCATATTGAGATTTACGAAGTCACCG 59.304 38.462 0.00 0.00 43.93 4.94
788 804 8.594881 ATCATATTGAGATTTACGAAGTCACC 57.405 34.615 0.00 0.00 43.93 4.02
793 809 8.323854 CGGCATATCATATTGAGATTTACGAAG 58.676 37.037 0.00 0.00 0.00 3.79
794 810 7.277760 CCGGCATATCATATTGAGATTTACGAA 59.722 37.037 0.00 0.00 0.00 3.85
795 811 6.756542 CCGGCATATCATATTGAGATTTACGA 59.243 38.462 0.00 0.00 0.00 3.43
796 812 6.510157 GCCGGCATATCATATTGAGATTTACG 60.510 42.308 24.80 0.00 0.00 3.18
797 813 6.540189 AGCCGGCATATCATATTGAGATTTAC 59.460 38.462 31.54 0.00 0.00 2.01
798 814 6.653020 AGCCGGCATATCATATTGAGATTTA 58.347 36.000 31.54 0.00 0.00 1.40
799 815 5.503927 AGCCGGCATATCATATTGAGATTT 58.496 37.500 31.54 0.00 0.00 2.17
800 816 5.108187 AGCCGGCATATCATATTGAGATT 57.892 39.130 31.54 0.00 0.00 2.40
801 817 4.162888 TGAGCCGGCATATCATATTGAGAT 59.837 41.667 31.54 0.06 0.00 2.75
802 818 3.515104 TGAGCCGGCATATCATATTGAGA 59.485 43.478 31.54 0.00 0.00 3.27
803 819 3.865446 TGAGCCGGCATATCATATTGAG 58.135 45.455 31.54 0.00 0.00 3.02
804 820 3.261643 ACTGAGCCGGCATATCATATTGA 59.738 43.478 31.54 0.00 0.00 2.57
805 821 3.603532 ACTGAGCCGGCATATCATATTG 58.396 45.455 31.54 13.72 0.00 1.90
806 822 3.517100 AGACTGAGCCGGCATATCATATT 59.483 43.478 31.54 10.68 0.00 1.28
807 823 3.102972 AGACTGAGCCGGCATATCATAT 58.897 45.455 31.54 14.40 0.00 1.78
808 824 2.493675 GAGACTGAGCCGGCATATCATA 59.506 50.000 31.54 5.14 0.00 2.15
809 825 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
810 826 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
811 827 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
812 828 1.069823 CAAGAGACTGAGCCGGCATAT 59.930 52.381 31.54 8.11 0.00 1.78
813 829 0.461548 CAAGAGACTGAGCCGGCATA 59.538 55.000 31.54 16.21 0.00 3.14
814 830 1.220206 CAAGAGACTGAGCCGGCAT 59.780 57.895 31.54 14.28 0.00 4.40
815 831 2.659016 CAAGAGACTGAGCCGGCA 59.341 61.111 31.54 7.98 0.00 5.69
816 832 2.125350 CCAAGAGACTGAGCCGGC 60.125 66.667 21.89 21.89 0.00 6.13
817 833 1.515020 CTCCAAGAGACTGAGCCGG 59.485 63.158 0.00 0.00 0.00 6.13
818 834 1.254284 ACCTCCAAGAGACTGAGCCG 61.254 60.000 0.00 0.00 0.00 5.52
819 835 0.248843 CACCTCCAAGAGACTGAGCC 59.751 60.000 0.00 0.00 0.00 4.70
820 836 0.390998 GCACCTCCAAGAGACTGAGC 60.391 60.000 0.00 0.00 0.00 4.26
821 837 1.204467 GAGCACCTCCAAGAGACTGAG 59.796 57.143 0.00 0.00 0.00 3.35
822 838 1.261480 GAGCACCTCCAAGAGACTGA 58.739 55.000 0.00 0.00 0.00 3.41
823 839 0.972134 TGAGCACCTCCAAGAGACTG 59.028 55.000 0.00 0.00 0.00 3.51
824 840 1.949799 ATGAGCACCTCCAAGAGACT 58.050 50.000 0.00 0.00 0.00 3.24
825 841 2.102252 CCTATGAGCACCTCCAAGAGAC 59.898 54.545 0.00 0.00 0.00 3.36
826 842 2.392662 CCTATGAGCACCTCCAAGAGA 58.607 52.381 0.00 0.00 0.00 3.10
827 843 1.415659 CCCTATGAGCACCTCCAAGAG 59.584 57.143 0.00 0.00 0.00 2.85
828 844 1.500474 CCCTATGAGCACCTCCAAGA 58.500 55.000 0.00 0.00 0.00 3.02
829 845 0.471617 CCCCTATGAGCACCTCCAAG 59.528 60.000 0.00 0.00 0.00 3.61
830 846 0.253160 ACCCCTATGAGCACCTCCAA 60.253 55.000 0.00 0.00 0.00 3.53
831 847 0.639943 TACCCCTATGAGCACCTCCA 59.360 55.000 0.00 0.00 0.00 3.86
832 848 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
833 849 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
834 850 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
835 851 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
836 852 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
837 853 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
838 854 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
839 855 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
840 856 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
841 857 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
842 858 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
843 859 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
844 860 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
845 861 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
846 862 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
847 863 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
848 864 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
849 865 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
852 868 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
853 869 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
854 870 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
855 871 0.233590 TTATGAACGCACACACGCAC 59.766 50.000 0.00 0.00 36.19 5.34
856 872 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
857 873 0.179225 CCTTATGAACGCACACACGC 60.179 55.000 0.00 0.00 36.19 5.34
858 874 0.442310 CCCTTATGAACGCACACACG 59.558 55.000 0.00 0.00 39.50 4.49
859 875 1.196808 CACCCTTATGAACGCACACAC 59.803 52.381 0.00 0.00 0.00 3.82
860 876 1.070914 TCACCCTTATGAACGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
861 877 1.732259 CTCACCCTTATGAACGCACAC 59.268 52.381 0.00 0.00 0.00 3.82
862 878 1.346395 ACTCACCCTTATGAACGCACA 59.654 47.619 0.00 0.00 0.00 4.57
863 879 1.732259 CACTCACCCTTATGAACGCAC 59.268 52.381 0.00 0.00 0.00 5.34
864 880 1.346395 ACACTCACCCTTATGAACGCA 59.654 47.619 0.00 0.00 0.00 5.24
865 881 2.094762 ACACTCACCCTTATGAACGC 57.905 50.000 0.00 0.00 0.00 4.84
866 882 3.555956 GCATACACTCACCCTTATGAACG 59.444 47.826 0.00 0.00 0.00 3.95
867 883 3.555956 CGCATACACTCACCCTTATGAAC 59.444 47.826 0.00 0.00 0.00 3.18
868 884 3.196901 ACGCATACACTCACCCTTATGAA 59.803 43.478 0.00 0.00 0.00 2.57
869 885 2.764010 ACGCATACACTCACCCTTATGA 59.236 45.455 0.00 0.00 0.00 2.15
870 886 2.866156 CACGCATACACTCACCCTTATG 59.134 50.000 0.00 0.00 0.00 1.90
871 887 2.500098 ACACGCATACACTCACCCTTAT 59.500 45.455 0.00 0.00 0.00 1.73
872 888 1.897133 ACACGCATACACTCACCCTTA 59.103 47.619 0.00 0.00 0.00 2.69
873 889 0.685097 ACACGCATACACTCACCCTT 59.315 50.000 0.00 0.00 0.00 3.95
874 890 0.037326 CACACGCATACACTCACCCT 60.037 55.000 0.00 0.00 0.00 4.34
875 891 0.320421 ACACACGCATACACTCACCC 60.320 55.000 0.00 0.00 0.00 4.61
876 892 2.357327 TACACACGCATACACTCACC 57.643 50.000 0.00 0.00 0.00 4.02
877 893 5.278604 TCATATACACACGCATACACTCAC 58.721 41.667 0.00 0.00 0.00 3.51
878 894 5.508200 TCATATACACACGCATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
879 895 4.383052 GCTCATATACACACGCATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
880 896 4.202111 TGCTCATATACACACGCATACACT 60.202 41.667 0.00 0.00 0.00 3.55
881 897 4.048504 TGCTCATATACACACGCATACAC 58.951 43.478 0.00 0.00 0.00 2.90
882 898 4.048504 GTGCTCATATACACACGCATACA 58.951 43.478 0.00 0.00 36.77 2.29
883 899 4.299155 AGTGCTCATATACACACGCATAC 58.701 43.478 5.73 0.00 39.30 2.39
884 900 4.584327 AGTGCTCATATACACACGCATA 57.416 40.909 5.73 0.00 39.30 3.14
885 901 3.459232 AGTGCTCATATACACACGCAT 57.541 42.857 5.73 0.00 39.30 4.73
886 902 2.929398 CAAGTGCTCATATACACACGCA 59.071 45.455 5.73 0.00 39.30 5.24
887 903 2.930040 ACAAGTGCTCATATACACACGC 59.070 45.455 5.73 0.00 39.30 5.34
888 904 3.926527 ACACAAGTGCTCATATACACACG 59.073 43.478 0.00 0.00 39.30 4.49
889 905 5.062683 CAGACACAAGTGCTCATATACACAC 59.937 44.000 0.00 0.00 39.30 3.82
890 906 5.170748 CAGACACAAGTGCTCATATACACA 58.829 41.667 0.00 0.00 39.30 3.72
891 907 5.171476 ACAGACACAAGTGCTCATATACAC 58.829 41.667 0.00 0.00 37.05 2.90
892 908 5.405935 ACAGACACAAGTGCTCATATACA 57.594 39.130 0.00 0.00 0.00 2.29
893 909 6.473778 CAGTACAGACACAAGTGCTCATATAC 59.526 42.308 0.00 0.00 0.00 1.47
894 910 6.377146 TCAGTACAGACACAAGTGCTCATATA 59.623 38.462 0.00 0.00 0.00 0.86
895 911 5.185828 TCAGTACAGACACAAGTGCTCATAT 59.814 40.000 0.00 0.00 0.00 1.78
896 912 4.522789 TCAGTACAGACACAAGTGCTCATA 59.477 41.667 0.00 0.00 0.00 2.15
897 913 3.321968 TCAGTACAGACACAAGTGCTCAT 59.678 43.478 0.00 0.00 0.00 2.90
898 914 2.693074 TCAGTACAGACACAAGTGCTCA 59.307 45.455 0.00 0.00 0.00 4.26
899 915 3.371102 TCAGTACAGACACAAGTGCTC 57.629 47.619 0.00 0.00 0.00 4.26
900 916 3.657634 CATCAGTACAGACACAAGTGCT 58.342 45.455 0.00 0.00 0.00 4.40
901 917 2.158449 GCATCAGTACAGACACAAGTGC 59.842 50.000 0.00 0.00 0.00 4.40
902 918 3.657634 AGCATCAGTACAGACACAAGTG 58.342 45.455 0.00 0.00 0.00 3.16
903 919 5.468540 TTAGCATCAGTACAGACACAAGT 57.531 39.130 0.00 0.00 0.00 3.16
904 920 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
939 955 9.403110 GCTAGCTATATCTACGTAGAGAGATAC 57.597 40.741 27.81 16.41 38.23 2.24
940 956 8.579006 GGCTAGCTATATCTACGTAGAGAGATA 58.421 40.741 27.81 23.20 39.12 1.98
941 957 7.439381 GGCTAGCTATATCTACGTAGAGAGAT 58.561 42.308 27.81 23.31 37.47 2.75
942 958 6.183360 GGGCTAGCTATATCTACGTAGAGAGA 60.183 46.154 27.81 20.68 35.50 3.10
943 959 5.987347 GGGCTAGCTATATCTACGTAGAGAG 59.013 48.000 27.81 23.34 35.50 3.20
944 960 5.662208 AGGGCTAGCTATATCTACGTAGAGA 59.338 44.000 27.81 24.65 35.50 3.10
945 961 5.756347 CAGGGCTAGCTATATCTACGTAGAG 59.244 48.000 27.81 16.45 35.50 2.43
952 968 4.531854 CAGAGCAGGGCTAGCTATATCTA 58.468 47.826 15.72 0.00 43.58 1.98
954 970 2.159114 GCAGAGCAGGGCTAGCTATATC 60.159 54.545 15.72 7.00 43.58 1.63
962 982 2.800541 CCGATGCAGAGCAGGGCTA 61.801 63.158 0.00 0.00 43.65 3.93
963 983 4.172512 CCGATGCAGAGCAGGGCT 62.173 66.667 0.00 0.00 43.65 5.19
966 986 4.172512 AGGCCGATGCAGAGCAGG 62.173 66.667 0.00 0.00 43.65 4.85
967 987 2.588314 GAGGCCGATGCAGAGCAG 60.588 66.667 0.00 0.00 43.65 4.24
968 988 4.166888 GGAGGCCGATGCAGAGCA 62.167 66.667 0.00 0.00 44.86 4.26
982 1002 3.319689 TGCATGCATATGGAATTGTGGAG 59.680 43.478 18.46 0.00 34.79 3.86
995 1015 8.411683 CAGATAGTACTGATCTATGCATGCATA 58.588 37.037 32.64 32.64 39.94 3.14
997 1017 6.435277 TCAGATAGTACTGATCTATGCATGCA 59.565 38.462 25.04 25.04 41.21 3.96
1005 1025 8.044309 GGATAGCAGTCAGATAGTACTGATCTA 58.956 40.741 5.39 0.00 46.36 1.98
1380 1415 3.151022 CCCTCCAGCTCCTCCGTC 61.151 72.222 0.00 0.00 0.00 4.79
1449 1499 1.825191 CATCATGGCCAGGAACCGG 60.825 63.158 25.94 10.58 0.00 5.28
1668 1721 4.934989 GGTACCTGAGGCTTTCCG 57.065 61.111 4.06 0.00 37.47 4.30
1716 1789 9.539825 AATTACTGTGTGCAATTTCATTGTTTA 57.460 25.926 0.00 0.00 42.20 2.01
1719 1792 7.436118 AGAATTACTGTGTGCAATTTCATTGT 58.564 30.769 0.00 0.00 42.20 2.71
1815 3022 9.657419 TGCATATATGTTAACTAGGATGATGTG 57.343 33.333 14.14 0.73 0.00 3.21
1850 3157 0.684805 AACGGGGCCTTCACAACAAA 60.685 50.000 0.84 0.00 0.00 2.83
1863 3170 6.372937 ACATAATTAAATTTTTGGCAACGGGG 59.627 34.615 0.00 0.00 42.51 5.73
1883 3190 9.474313 AGATTTAGCATCCCACTTTTTACATAA 57.526 29.630 0.00 0.00 0.00 1.90
1887 3194 7.391148 TGAGATTTAGCATCCCACTTTTTAC 57.609 36.000 0.00 0.00 0.00 2.01
1895 3202 1.845791 TGCCTGAGATTTAGCATCCCA 59.154 47.619 0.00 0.00 0.00 4.37
1896 3203 2.645838 TGCCTGAGATTTAGCATCCC 57.354 50.000 0.00 0.00 0.00 3.85
1934 3476 9.322773 TGTAAGATCTTCAGAATAAAGCATGAG 57.677 33.333 12.24 0.00 0.00 2.90
1989 3560 3.062234 CGACCGAGGCTTAATCAAGTTTC 59.938 47.826 0.00 0.00 34.00 2.78
2002 3610 0.810016 AAGTCTTAGTCGACCGAGGC 59.190 55.000 13.01 11.99 34.46 4.70
2003 3611 2.031930 GCTAAGTCTTAGTCGACCGAGG 59.968 54.545 18.72 1.02 35.66 4.63
2006 3614 1.741706 TGGCTAAGTCTTAGTCGACCG 59.258 52.381 17.32 0.99 40.70 4.79
2007 3615 2.490903 TGTGGCTAAGTCTTAGTCGACC 59.509 50.000 17.32 11.81 40.70 4.79
2015 3623 5.968676 TTATATGGGTGTGGCTAAGTCTT 57.031 39.130 0.00 0.00 0.00 3.01
2039 3647 4.591924 AGGTAGTATAACCATGTGCCCTAC 59.408 45.833 0.00 0.00 42.40 3.18
2040 3648 4.823107 AGGTAGTATAACCATGTGCCCTA 58.177 43.478 0.00 0.00 42.40 3.53
2057 3665 7.671398 AGGGCAAATAATATGGATCAAAGGTAG 59.329 37.037 0.00 0.00 0.00 3.18
2059 3667 6.384603 AGGGCAAATAATATGGATCAAAGGT 58.615 36.000 0.00 0.00 0.00 3.50
2061 3669 8.868522 TCTAGGGCAAATAATATGGATCAAAG 57.131 34.615 0.00 0.00 0.00 2.77
2143 3751 9.612066 ACCCAAATTGTAAATTTAGGCAATATG 57.388 29.630 12.10 6.35 32.09 1.78
2220 4121 0.331954 AGCTAACCCCTCTGTCTCGA 59.668 55.000 0.00 0.00 0.00 4.04
2225 4126 2.043801 AGAGAGAAGCTAACCCCTCTGT 59.956 50.000 0.00 0.00 36.25 3.41
2249 4818 5.250774 AGCTAACCCCTCTGTAATTCTCAAA 59.749 40.000 0.00 0.00 0.00 2.69
2257 4826 2.185387 GGACAGCTAACCCCTCTGTAA 58.815 52.381 0.00 0.00 40.74 2.41
2258 4827 1.361543 AGGACAGCTAACCCCTCTGTA 59.638 52.381 4.96 0.00 40.74 2.74
2260 4829 0.539051 CAGGACAGCTAACCCCTCTG 59.461 60.000 4.96 0.00 0.00 3.35
2261 4830 0.117340 ACAGGACAGCTAACCCCTCT 59.883 55.000 4.96 0.00 0.00 3.69
2263 4832 0.473886 ACACAGGACAGCTAACCCCT 60.474 55.000 4.96 0.00 0.00 4.79
2264 4833 0.400594 AACACAGGACAGCTAACCCC 59.599 55.000 4.96 0.00 0.00 4.95
2265 4834 2.271944 AAACACAGGACAGCTAACCC 57.728 50.000 4.96 0.00 0.00 4.11
2266 4835 5.699839 CAAATAAACACAGGACAGCTAACC 58.300 41.667 0.00 0.00 0.00 2.85
2267 4836 5.048713 AGCAAATAAACACAGGACAGCTAAC 60.049 40.000 0.00 0.00 0.00 2.34
2268 4837 5.070001 AGCAAATAAACACAGGACAGCTAA 58.930 37.500 0.00 0.00 0.00 3.09
2269 4838 4.651778 AGCAAATAAACACAGGACAGCTA 58.348 39.130 0.00 0.00 0.00 3.32
2271 4840 3.366374 GGAGCAAATAAACACAGGACAGC 60.366 47.826 0.00 0.00 0.00 4.40
2274 4843 3.366374 GCAGGAGCAAATAAACACAGGAC 60.366 47.826 0.00 0.00 41.58 3.85
2275 4844 2.819608 GCAGGAGCAAATAAACACAGGA 59.180 45.455 0.00 0.00 41.58 3.86
2276 4845 3.221964 GCAGGAGCAAATAAACACAGG 57.778 47.619 0.00 0.00 41.58 4.00
2289 4858 0.529378 CCTCATTTGGTTGCAGGAGC 59.471 55.000 0.00 0.00 42.57 4.70
2290 4859 0.529378 GCCTCATTTGGTTGCAGGAG 59.471 55.000 0.00 0.00 0.00 3.69
2291 4860 0.899717 GGCCTCATTTGGTTGCAGGA 60.900 55.000 0.00 0.00 0.00 3.86
2296 4983 3.157087 ACACTAAGGCCTCATTTGGTTG 58.843 45.455 5.23 0.00 0.00 3.77
2299 4986 3.420893 TCAACACTAAGGCCTCATTTGG 58.579 45.455 5.23 0.00 0.00 3.28
2304 4991 2.026262 GGGAATCAACACTAAGGCCTCA 60.026 50.000 5.23 0.00 0.00 3.86
2305 4992 2.026262 TGGGAATCAACACTAAGGCCTC 60.026 50.000 5.23 0.00 0.00 4.70
2308 4995 2.092323 GGTGGGAATCAACACTAAGGC 58.908 52.381 7.14 0.00 37.72 4.35
2316 5003 4.336713 GCTCTAAATCAGGTGGGAATCAAC 59.663 45.833 0.00 0.00 0.00 3.18
2379 5079 1.350351 GTCTATGATGGCAGGCCTCAT 59.650 52.381 17.17 17.17 37.55 2.90
2398 5098 0.614294 TCTCTCTTCCTCTCGTCCGT 59.386 55.000 0.00 0.00 0.00 4.69
2456 5192 4.733077 TGGGTAAGTCAATTTTCAGGGA 57.267 40.909 0.00 0.00 0.00 4.20
2532 5278 9.053840 GTCAGCTTACATATCTACTGTGTACTA 57.946 37.037 0.00 0.00 31.91 1.82
2533 5279 7.776030 AGTCAGCTTACATATCTACTGTGTACT 59.224 37.037 0.03 0.00 31.91 2.73
2535 5281 7.773690 TCAGTCAGCTTACATATCTACTGTGTA 59.226 37.037 0.03 0.00 35.68 2.90
2539 5285 8.976471 CAAATCAGTCAGCTTACATATCTACTG 58.024 37.037 0.03 0.00 35.54 2.74
2541 5287 7.439356 TGCAAATCAGTCAGCTTACATATCTAC 59.561 37.037 0.03 0.00 0.00 2.59
2544 5290 6.609237 TGCAAATCAGTCAGCTTACATATC 57.391 37.500 0.03 0.00 0.00 1.63
2546 5292 7.395190 AATTGCAAATCAGTCAGCTTACATA 57.605 32.000 1.71 0.00 0.00 2.29
2547 5293 5.909621 ATTGCAAATCAGTCAGCTTACAT 57.090 34.783 1.71 0.00 0.00 2.29
2554 5301 9.760660 GTAGTACTAAAATTGCAAATCAGTCAG 57.239 33.333 1.71 0.00 0.00 3.51
2598 5358 2.125106 GGTGGTGTCCTGCCGATC 60.125 66.667 0.00 0.00 0.00 3.69
2599 5359 2.224159 AAGGTGGTGTCCTGCCGAT 61.224 57.895 0.00 0.00 37.93 4.18
2636 5396 0.725117 GCGACACGGGTGGAAAATAG 59.275 55.000 3.11 0.00 34.19 1.73
2637 5397 0.322322 AGCGACACGGGTGGAAAATA 59.678 50.000 3.11 0.00 34.19 1.40
2718 6470 8.120465 GTCCATATAAAATGTTCAGGTGTAACG 58.880 37.037 0.00 0.00 38.12 3.18
2769 6637 3.270877 AGACACCATTGAAATAGTCGCC 58.729 45.455 0.00 0.00 0.00 5.54
2844 6919 1.710013 TCGGTTGATGAAGTCTTCGC 58.290 50.000 8.06 3.57 0.00 4.70
2848 6923 3.338249 CACCATTCGGTTGATGAAGTCT 58.662 45.455 0.00 0.00 46.31 3.24
3031 7106 2.415608 CCCGGCTTCGTAGAGCTCA 61.416 63.158 17.77 0.00 38.43 4.26
3600 7675 3.068560 AGTTATTAAGTTGTTGCGGCGA 58.931 40.909 12.98 0.00 0.00 5.54
3637 7723 4.346129 GAAACGAATTCATGCATCAGGAC 58.654 43.478 6.22 0.00 37.99 3.85
3640 7726 4.007282 ACGAAACGAATTCATGCATCAG 57.993 40.909 6.22 0.00 37.96 2.90
3643 7729 5.343058 CAGAAAACGAAACGAATTCATGCAT 59.657 36.000 6.22 0.00 37.96 3.96
3659 7749 6.750039 ACAACATTAACCTCAAACAGAAAACG 59.250 34.615 0.00 0.00 0.00 3.60
3677 7767 6.552859 TTGATGATGTACGACAACAACATT 57.447 33.333 11.78 1.29 41.34 2.71
3678 7768 5.390885 GCTTGATGATGTACGACAACAACAT 60.391 40.000 10.83 10.83 43.19 2.71
3696 7786 4.101741 GTGTAGATAACCCAGAGGCTTGAT 59.898 45.833 0.00 0.00 36.11 2.57
3716 7817 1.301244 CTTCGCTCCTGCACAGTGT 60.301 57.895 1.61 0.00 39.64 3.55
3770 7885 2.719325 ATTGAATCATGACGAACGCG 57.281 45.000 3.53 3.53 44.79 6.01
3804 7919 5.063817 TCAGCAATGATCGTGTTTCATGTAG 59.936 40.000 0.00 0.00 34.14 2.74
3818 7933 2.620115 CGCCCAAATACTCAGCAATGAT 59.380 45.455 0.00 0.00 0.00 2.45
3821 7936 1.745087 CACGCCCAAATACTCAGCAAT 59.255 47.619 0.00 0.00 0.00 3.56
3843 7958 0.728542 GGCGTAATGTTTACACCGGG 59.271 55.000 6.32 0.00 0.00 5.73
3847 7962 4.271776 GGTCATAGGGCGTAATGTTTACAC 59.728 45.833 0.00 0.00 0.00 2.90
3848 7963 4.081031 TGGTCATAGGGCGTAATGTTTACA 60.081 41.667 0.00 0.00 0.00 2.41
3849 7964 4.444536 TGGTCATAGGGCGTAATGTTTAC 58.555 43.478 0.00 0.00 0.00 2.01
3850 7965 4.757019 TGGTCATAGGGCGTAATGTTTA 57.243 40.909 0.00 0.00 0.00 2.01
3851 7966 3.637911 TGGTCATAGGGCGTAATGTTT 57.362 42.857 0.00 0.00 0.00 2.83
3854 7969 2.813754 CCATTGGTCATAGGGCGTAATG 59.186 50.000 0.00 1.94 0.00 1.90
3876 7992 1.559682 TGTTGCTAGGGGAGGAATGAC 59.440 52.381 0.00 0.00 37.87 3.06
3893 8009 4.056050 CACGGACACTTAGCTAGTTTGTT 58.944 43.478 0.00 0.00 33.85 2.83
3894 8010 3.650139 CACGGACACTTAGCTAGTTTGT 58.350 45.455 4.18 4.18 33.85 2.83
3895 8011 2.412089 GCACGGACACTTAGCTAGTTTG 59.588 50.000 0.00 0.00 33.85 2.93
3896 8012 2.685100 GCACGGACACTTAGCTAGTTT 58.315 47.619 0.00 0.00 33.85 2.66
3897 8013 1.402456 CGCACGGACACTTAGCTAGTT 60.402 52.381 0.00 0.00 33.85 2.24
3990 8106 9.288576 ACTCTCATGTCACATGAATTTTCTTTA 57.711 29.630 20.99 0.00 0.00 1.85
4117 8233 1.536331 GAGAAGGAAGTCGAGTGTCGT 59.464 52.381 0.00 0.00 41.35 4.34
4228 8344 2.296943 AATCTAAGGGGGTGCCCTAA 57.703 50.000 7.26 0.00 44.66 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.