Multiple sequence alignment - TraesCS6A01G029600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G029600 chr6A 100.000 3498 0 0 1 3498 15493307 15489810 0.000000e+00 6460.0
1 TraesCS6A01G029600 chr6A 87.224 1041 104 14 1685 2717 15542438 15543457 0.000000e+00 1158.0
2 TraesCS6A01G029600 chr6A 86.418 913 102 13 1670 2576 15457484 15456588 0.000000e+00 979.0
3 TraesCS6A01G029600 chr6A 86.634 823 81 14 827 1643 15461819 15461020 0.000000e+00 883.0
4 TraesCS6A01G029600 chr6A 89.006 664 60 9 950 1603 15540679 15541339 0.000000e+00 809.0
5 TraesCS6A01G029600 chr6A 90.517 116 8 3 991 1103 15505227 15505342 2.180000e-32 150.0
6 TraesCS6A01G029600 chr6D 96.422 1090 38 1 1738 2827 14231356 14230268 0.000000e+00 1796.0
7 TraesCS6A01G029600 chr6D 87.413 1009 110 6 1684 2691 14241265 14242257 0.000000e+00 1144.0
8 TraesCS6A01G029600 chr6D 88.671 918 95 4 1683 2596 14202034 14201122 0.000000e+00 1110.0
9 TraesCS6A01G029600 chr6D 89.346 826 75 6 811 1635 14232437 14231624 0.000000e+00 1026.0
10 TraesCS6A01G029600 chr6D 87.515 817 79 15 827 1637 14203655 14202856 0.000000e+00 922.0
11 TraesCS6A01G029600 chr6D 90.729 658 54 5 991 1642 14239438 14240094 0.000000e+00 870.0
12 TraesCS6A01G029600 chr6D 84.698 464 56 8 3021 3484 151503530 151503082 1.910000e-122 449.0
13 TraesCS6A01G029600 chr6D 88.679 159 11 3 155 311 14232600 14232447 1.660000e-43 187.0
14 TraesCS6A01G029600 chr6D 100.000 33 0 0 2883 2915 147625629 147625597 1.050000e-05 62.1
15 TraesCS6A01G029600 chr6D 100.000 28 0 0 2822 2849 14229687 14229660 6.000000e-03 52.8
16 TraesCS6A01G029600 chr6B 86.796 1030 117 8 1684 2712 26004615 26005626 0.000000e+00 1131.0
17 TraesCS6A01G029600 chr6B 85.979 1027 119 9 1687 2712 26121012 26120010 0.000000e+00 1075.0
18 TraesCS6A01G029600 chr6B 86.364 924 114 7 1676 2597 25972520 25971607 0.000000e+00 998.0
19 TraesCS6A01G029600 chr6B 87.226 822 79 14 827 1642 25976271 25975470 0.000000e+00 913.0
20 TraesCS6A01G029600 chr6B 89.503 724 61 9 954 1667 26001778 26002496 0.000000e+00 902.0
21 TraesCS6A01G029600 chr6B 90.652 460 41 1 3006 3465 633004039 633003582 8.300000e-171 610.0
22 TraesCS6A01G029600 chr6B 88.095 462 42 8 1212 1667 26123374 26122920 1.430000e-148 536.0
23 TraesCS6A01G029600 chr6B 81.743 241 38 5 578 813 191066946 191067185 2.750000e-46 196.0
24 TraesCS6A01G029600 chr6B 77.206 136 20 10 2876 3002 88749752 88749619 6.270000e-08 69.4
25 TraesCS6A01G029600 chr4A 94.456 487 15 3 3012 3498 86178363 86177889 0.000000e+00 739.0
26 TraesCS6A01G029600 chr4A 95.588 272 12 0 308 579 46310454 46310183 1.490000e-118 436.0
27 TraesCS6A01G029600 chr4A 91.946 149 6 1 2860 3008 86178673 86178531 1.650000e-48 204.0
28 TraesCS6A01G029600 chr1B 83.354 799 118 10 1726 2520 465388664 465387877 0.000000e+00 725.0
29 TraesCS6A01G029600 chr1B 83.252 615 86 12 1006 1604 465389343 465388730 1.840000e-152 549.0
30 TraesCS6A01G029600 chr3B 89.655 493 49 2 3006 3498 222766548 222767038 8.240000e-176 627.0
31 TraesCS6A01G029600 chr3B 81.928 249 38 6 577 819 268746150 268746397 1.650000e-48 204.0
32 TraesCS6A01G029600 chr3B 84.354 147 17 2 2862 3008 222766043 222766183 4.710000e-29 139.0
33 TraesCS6A01G029600 chr3B 90.323 62 3 2 2857 2918 416530843 416530785 1.040000e-10 78.7
34 TraesCS6A01G029600 chr1D 82.622 633 90 11 988 1604 345375029 345375657 3.070000e-150 542.0
35 TraesCS6A01G029600 chr1D 81.550 271 41 7 577 841 80376702 80376969 7.600000e-52 215.0
36 TraesCS6A01G029600 chr1A 82.622 633 90 13 988 1604 445502537 445503165 3.070000e-150 542.0
37 TraesCS6A01G029600 chr7A 95.880 267 9 2 305 570 711611845 711612110 6.940000e-117 431.0
38 TraesCS6A01G029600 chr7A 95.802 262 11 0 308 569 93486431 93486692 1.160000e-114 424.0
39 TraesCS6A01G029600 chr2B 95.094 265 13 0 307 571 723031685 723031949 5.400000e-113 418.0
40 TraesCS6A01G029600 chr2D 94.737 266 13 1 305 569 321240770 321240505 2.510000e-111 412.0
41 TraesCS6A01G029600 chr7D 94.318 264 15 0 305 568 474532171 474532434 4.200000e-109 405.0
42 TraesCS6A01G029600 chr7D 82.278 237 39 2 578 812 243333467 243333232 5.920000e-48 202.0
43 TraesCS6A01G029600 chr7D 93.750 48 2 1 2869 2915 387925990 387926037 1.740000e-08 71.3
44 TraesCS6A01G029600 chr7D 91.304 46 3 1 2874 2918 186504450 186504405 1.050000e-05 62.1
45 TraesCS6A01G029600 chr5D 93.704 270 16 1 299 568 87803345 87803613 1.510000e-108 403.0
46 TraesCS6A01G029600 chr5D 84.274 248 32 5 578 819 538171774 538171528 5.840000e-58 235.0
47 TraesCS6A01G029600 chr5D 90.323 62 3 2 2857 2918 12325180 12325122 1.040000e-10 78.7
48 TraesCS6A01G029600 chr3D 93.962 265 16 0 307 571 553424110 553423846 5.440000e-108 401.0
49 TraesCS6A01G029600 chr3D 82.593 270 38 9 577 841 250129392 250129127 2.720000e-56 230.0
50 TraesCS6A01G029600 chr3D 81.919 271 40 7 577 841 356407407 356407140 1.630000e-53 220.0
51 TraesCS6A01G029600 chr4D 92.727 275 19 1 296 569 47750694 47750968 2.530000e-106 396.0
52 TraesCS6A01G029600 chr5A 82.520 246 37 5 574 814 48351818 48352062 9.840000e-51 211.0
53 TraesCS6A01G029600 chr5A 95.455 44 1 1 2872 2915 267953461 267953419 6.270000e-08 69.4
54 TraesCS6A01G029600 chr4B 79.779 272 44 10 577 841 243813296 243813029 1.660000e-43 187.0
55 TraesCS6A01G029600 chr7B 83.660 153 20 4 2857 3008 564738435 564738583 4.710000e-29 139.0
56 TraesCS6A01G029600 chr2A 76.301 173 38 2 3144 3316 87699897 87700066 4.810000e-14 89.8
57 TraesCS6A01G029600 chr2A 93.023 43 2 1 2881 2923 176494911 176494870 1.050000e-05 62.1
58 TraesCS6A01G029600 chr5B 87.719 57 4 1 2865 2918 137059419 137059363 2.910000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G029600 chr6A 15489810 15493307 3497 True 6460.00 6460 100.00000 1 3498 1 chr6A.!!$R1 3497
1 TraesCS6A01G029600 chr6A 15540679 15543457 2778 False 983.50 1158 88.11500 950 2717 2 chr6A.!!$F2 1767
2 TraesCS6A01G029600 chr6A 15456588 15461819 5231 True 931.00 979 86.52600 827 2576 2 chr6A.!!$R2 1749
3 TraesCS6A01G029600 chr6D 14201122 14203655 2533 True 1016.00 1110 88.09300 827 2596 2 chr6D.!!$R3 1769
4 TraesCS6A01G029600 chr6D 14239438 14242257 2819 False 1007.00 1144 89.07100 991 2691 2 chr6D.!!$F1 1700
5 TraesCS6A01G029600 chr6D 14229660 14232600 2940 True 765.45 1796 93.61175 155 2849 4 chr6D.!!$R4 2694
6 TraesCS6A01G029600 chr6B 26001778 26005626 3848 False 1016.50 1131 88.14950 954 2712 2 chr6B.!!$F2 1758
7 TraesCS6A01G029600 chr6B 25971607 25976271 4664 True 955.50 998 86.79500 827 2597 2 chr6B.!!$R3 1770
8 TraesCS6A01G029600 chr6B 26120010 26123374 3364 True 805.50 1075 87.03700 1212 2712 2 chr6B.!!$R4 1500
9 TraesCS6A01G029600 chr4A 86177889 86178673 784 True 471.50 739 93.20100 2860 3498 2 chr4A.!!$R2 638
10 TraesCS6A01G029600 chr1B 465387877 465389343 1466 True 637.00 725 83.30300 1006 2520 2 chr1B.!!$R1 1514
11 TraesCS6A01G029600 chr3B 222766043 222767038 995 False 383.00 627 87.00450 2862 3498 2 chr3B.!!$F2 636
12 TraesCS6A01G029600 chr1D 345375029 345375657 628 False 542.00 542 82.62200 988 1604 1 chr1D.!!$F2 616
13 TraesCS6A01G029600 chr1A 445502537 445503165 628 False 542.00 542 82.62200 988 1604 1 chr1A.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.101759 ACAAATGCATGCGATGGCTC 59.898 50.000 14.09 0.0 40.82 4.70 F
144 145 0.596600 CAAATGCATGCGATGGCTCC 60.597 55.000 14.09 0.0 40.82 4.70 F
1008 1016 1.134007 AGATCAATCGCAATGGAGGCA 60.134 47.619 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1019 1027 0.034059 CCACGTCCTCTTGCTTCTGT 59.966 55.0 0.00 0.0 0.00 3.41 R
1214 1225 0.607489 GTGCTTGTGCTCCTCCATGT 60.607 55.0 0.00 0.0 40.48 3.21 R
2849 9060 0.031994 GAGGAGAGAGCGCCTTGATC 59.968 60.0 2.29 0.0 45.01 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.312729 ACAAATCACCGGAAAACCGC 59.687 50.000 9.46 0.00 0.00 5.68
20 21 0.388006 CAAATCACCGGAAAACCGCC 60.388 55.000 9.46 0.00 0.00 6.13
21 22 0.538746 AAATCACCGGAAAACCGCCT 60.539 50.000 9.46 0.00 0.00 5.52
22 23 0.958876 AATCACCGGAAAACCGCCTC 60.959 55.000 9.46 0.00 0.00 4.70
23 24 1.838073 ATCACCGGAAAACCGCCTCT 61.838 55.000 9.46 0.00 0.00 3.69
24 25 2.032071 ACCGGAAAACCGCCTCTG 59.968 61.111 9.46 0.00 0.00 3.35
25 26 3.431725 CCGGAAAACCGCCTCTGC 61.432 66.667 0.00 0.00 0.00 4.26
26 27 2.358737 CGGAAAACCGCCTCTGCT 60.359 61.111 0.00 0.00 34.43 4.24
27 28 2.391389 CGGAAAACCGCCTCTGCTC 61.391 63.158 0.00 0.00 34.43 4.26
28 29 1.302511 GGAAAACCGCCTCTGCTCA 60.303 57.895 0.00 0.00 34.43 4.26
29 30 0.678048 GGAAAACCGCCTCTGCTCAT 60.678 55.000 0.00 0.00 34.43 2.90
30 31 0.449388 GAAAACCGCCTCTGCTCATG 59.551 55.000 0.00 0.00 34.43 3.07
31 32 0.250901 AAAACCGCCTCTGCTCATGT 60.251 50.000 0.00 0.00 34.43 3.21
32 33 0.250901 AAACCGCCTCTGCTCATGTT 60.251 50.000 0.00 0.00 34.43 2.71
33 34 0.674895 AACCGCCTCTGCTCATGTTC 60.675 55.000 0.00 0.00 34.43 3.18
34 35 2.169789 CCGCCTCTGCTCATGTTCG 61.170 63.158 0.00 0.00 34.43 3.95
35 36 1.446792 CGCCTCTGCTCATGTTCGT 60.447 57.895 0.00 0.00 34.43 3.85
36 37 1.690283 CGCCTCTGCTCATGTTCGTG 61.690 60.000 0.00 0.00 34.43 4.35
37 38 0.671781 GCCTCTGCTCATGTTCGTGT 60.672 55.000 0.00 0.00 33.53 4.49
38 39 1.354040 CCTCTGCTCATGTTCGTGTC 58.646 55.000 0.00 0.00 0.00 3.67
39 40 1.067283 CCTCTGCTCATGTTCGTGTCT 60.067 52.381 0.00 0.00 0.00 3.41
40 41 2.611473 CCTCTGCTCATGTTCGTGTCTT 60.611 50.000 0.00 0.00 0.00 3.01
41 42 2.407090 TCTGCTCATGTTCGTGTCTTG 58.593 47.619 0.00 0.00 0.00 3.02
42 43 1.462283 CTGCTCATGTTCGTGTCTTGG 59.538 52.381 0.00 0.00 0.00 3.61
43 44 1.202639 TGCTCATGTTCGTGTCTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
44 45 1.461127 GCTCATGTTCGTGTCTTGGTC 59.539 52.381 0.00 0.00 0.00 4.02
45 46 1.721389 CTCATGTTCGTGTCTTGGTCG 59.279 52.381 0.00 0.00 0.00 4.79
46 47 1.338655 TCATGTTCGTGTCTTGGTCGA 59.661 47.619 0.00 0.00 0.00 4.20
47 48 2.029380 TCATGTTCGTGTCTTGGTCGAT 60.029 45.455 0.00 0.00 33.72 3.59
48 49 2.060326 TGTTCGTGTCTTGGTCGATC 57.940 50.000 0.00 0.00 33.72 3.69
49 50 1.611977 TGTTCGTGTCTTGGTCGATCT 59.388 47.619 0.00 0.00 33.72 2.75
50 51 1.986378 GTTCGTGTCTTGGTCGATCTG 59.014 52.381 0.00 0.00 33.72 2.90
51 52 0.526211 TCGTGTCTTGGTCGATCTGG 59.474 55.000 0.00 0.00 0.00 3.86
52 53 0.458543 CGTGTCTTGGTCGATCTGGG 60.459 60.000 0.00 0.00 0.00 4.45
53 54 0.741221 GTGTCTTGGTCGATCTGGGC 60.741 60.000 0.00 0.00 0.00 5.36
54 55 1.519455 GTCTTGGTCGATCTGGGCG 60.519 63.158 0.00 0.00 0.00 6.13
55 56 2.892425 CTTGGTCGATCTGGGCGC 60.892 66.667 0.00 0.00 0.00 6.53
56 57 3.664025 CTTGGTCGATCTGGGCGCA 62.664 63.158 10.83 2.47 0.00 6.09
57 58 3.247056 TTGGTCGATCTGGGCGCAA 62.247 57.895 10.83 0.00 0.00 4.85
58 59 3.195698 GGTCGATCTGGGCGCAAC 61.196 66.667 10.83 1.07 0.00 4.17
59 60 3.554692 GTCGATCTGGGCGCAACG 61.555 66.667 10.83 11.10 0.00 4.10
60 61 4.812476 TCGATCTGGGCGCAACGG 62.812 66.667 10.83 6.80 0.00 4.44
80 81 4.039357 CGACGCGTCCACCTGTCT 62.039 66.667 31.84 0.00 0.00 3.41
81 82 2.430921 GACGCGTCCACCTGTCTG 60.431 66.667 28.61 0.00 0.00 3.51
82 83 4.664677 ACGCGTCCACCTGTCTGC 62.665 66.667 5.58 0.00 0.00 4.26
83 84 4.662961 CGCGTCCACCTGTCTGCA 62.663 66.667 0.00 0.00 0.00 4.41
84 85 2.740055 GCGTCCACCTGTCTGCAG 60.740 66.667 7.63 7.63 42.22 4.41
85 86 2.737180 CGTCCACCTGTCTGCAGT 59.263 61.111 14.67 0.00 41.02 4.40
86 87 1.665916 CGTCCACCTGTCTGCAGTG 60.666 63.158 14.67 4.73 41.02 3.66
87 88 1.748403 GTCCACCTGTCTGCAGTGA 59.252 57.895 14.67 0.08 41.02 3.41
88 89 0.322975 GTCCACCTGTCTGCAGTGAT 59.677 55.000 14.67 0.00 41.02 3.06
89 90 1.059098 TCCACCTGTCTGCAGTGATT 58.941 50.000 14.67 0.00 41.02 2.57
90 91 1.421268 TCCACCTGTCTGCAGTGATTT 59.579 47.619 14.67 0.00 41.02 2.17
91 92 1.538512 CCACCTGTCTGCAGTGATTTG 59.461 52.381 14.67 6.98 41.02 2.32
92 93 2.224606 CACCTGTCTGCAGTGATTTGT 58.775 47.619 14.67 2.24 41.02 2.83
93 94 3.402110 CACCTGTCTGCAGTGATTTGTA 58.598 45.455 14.67 0.00 41.02 2.41
94 95 3.187227 CACCTGTCTGCAGTGATTTGTAC 59.813 47.826 14.67 2.06 41.02 2.90
95 96 2.744202 CCTGTCTGCAGTGATTTGTACC 59.256 50.000 14.67 0.00 41.02 3.34
96 97 3.402110 CTGTCTGCAGTGATTTGTACCA 58.598 45.455 14.67 0.00 37.92 3.25
97 98 3.138304 TGTCTGCAGTGATTTGTACCAC 58.862 45.455 14.67 0.00 0.00 4.16
98 99 3.181455 TGTCTGCAGTGATTTGTACCACT 60.181 43.478 14.67 0.00 43.73 4.00
99 100 3.433615 GTCTGCAGTGATTTGTACCACTC 59.566 47.826 14.67 0.00 41.26 3.51
100 101 3.070878 TCTGCAGTGATTTGTACCACTCA 59.929 43.478 14.67 0.00 41.26 3.41
101 102 4.005650 CTGCAGTGATTTGTACCACTCAT 58.994 43.478 5.25 0.00 41.26 2.90
102 103 5.046663 TCTGCAGTGATTTGTACCACTCATA 60.047 40.000 14.67 0.00 41.26 2.15
103 104 5.555966 TGCAGTGATTTGTACCACTCATAA 58.444 37.500 0.00 0.00 41.26 1.90
104 105 6.000840 TGCAGTGATTTGTACCACTCATAAA 58.999 36.000 0.00 0.00 41.26 1.40
105 106 6.658816 TGCAGTGATTTGTACCACTCATAAAT 59.341 34.615 0.00 0.00 41.26 1.40
106 107 7.826744 TGCAGTGATTTGTACCACTCATAAATA 59.173 33.333 0.00 0.00 41.26 1.40
107 108 8.338259 GCAGTGATTTGTACCACTCATAAATAG 58.662 37.037 0.00 0.00 41.26 1.73
108 109 8.338259 CAGTGATTTGTACCACTCATAAATAGC 58.662 37.037 0.10 0.00 41.26 2.97
109 110 8.046708 AGTGATTTGTACCACTCATAAATAGCA 58.953 33.333 0.00 0.00 39.19 3.49
110 111 8.122952 GTGATTTGTACCACTCATAAATAGCAC 58.877 37.037 0.00 0.00 0.00 4.40
111 112 7.826744 TGATTTGTACCACTCATAAATAGCACA 59.173 33.333 0.00 0.00 0.00 4.57
112 113 7.987750 TTTGTACCACTCATAAATAGCACAA 57.012 32.000 0.00 0.00 0.00 3.33
113 114 7.987750 TTGTACCACTCATAAATAGCACAAA 57.012 32.000 0.00 0.00 0.00 2.83
114 115 7.372451 TGTACCACTCATAAATAGCACAAAC 57.628 36.000 0.00 0.00 0.00 2.93
115 116 7.165485 TGTACCACTCATAAATAGCACAAACT 58.835 34.615 0.00 0.00 0.00 2.66
116 117 8.315482 TGTACCACTCATAAATAGCACAAACTA 58.685 33.333 0.00 0.00 0.00 2.24
117 118 9.326413 GTACCACTCATAAATAGCACAAACTAT 57.674 33.333 0.00 0.00 34.25 2.12
119 120 9.547753 ACCACTCATAAATAGCACAAACTATAG 57.452 33.333 0.00 0.00 32.49 1.31
120 121 9.764363 CCACTCATAAATAGCACAAACTATAGA 57.236 33.333 6.78 0.00 32.49 1.98
131 132 8.298030 AGCACAAACTATAGAAAAACAAATGC 57.702 30.769 6.78 3.98 0.00 3.56
132 133 7.925483 AGCACAAACTATAGAAAAACAAATGCA 59.075 29.630 6.78 0.00 0.00 3.96
133 134 8.711457 GCACAAACTATAGAAAAACAAATGCAT 58.289 29.630 6.78 0.00 0.00 3.96
135 136 8.711457 ACAAACTATAGAAAAACAAATGCATGC 58.289 29.630 11.82 11.82 0.00 4.06
136 137 7.510428 AACTATAGAAAAACAAATGCATGCG 57.490 32.000 14.09 0.35 0.00 4.73
137 138 6.851609 ACTATAGAAAAACAAATGCATGCGA 58.148 32.000 14.09 2.48 0.00 5.10
138 139 7.483307 ACTATAGAAAAACAAATGCATGCGAT 58.517 30.769 14.09 4.99 0.00 4.58
139 140 4.914312 AGAAAAACAAATGCATGCGATG 57.086 36.364 14.09 13.82 0.00 3.84
140 141 3.680937 AGAAAAACAAATGCATGCGATGG 59.319 39.130 14.09 4.18 0.00 3.51
141 142 1.361793 AAACAAATGCATGCGATGGC 58.638 45.000 14.09 0.00 40.52 4.40
142 143 0.533491 AACAAATGCATGCGATGGCT 59.467 45.000 14.09 1.24 40.82 4.75
143 144 0.101759 ACAAATGCATGCGATGGCTC 59.898 50.000 14.09 0.00 40.82 4.70
144 145 0.596600 CAAATGCATGCGATGGCTCC 60.597 55.000 14.09 0.00 40.82 4.70
145 146 1.741327 AAATGCATGCGATGGCTCCC 61.741 55.000 14.09 0.00 40.82 4.30
146 147 4.881440 TGCATGCGATGGCTCCCC 62.881 66.667 14.09 0.00 40.82 4.81
147 148 4.575973 GCATGCGATGGCTCCCCT 62.576 66.667 0.00 0.00 40.82 4.79
148 149 3.150949 CATGCGATGGCTCCCCTA 58.849 61.111 0.15 0.00 40.82 3.53
149 150 1.302033 CATGCGATGGCTCCCCTAC 60.302 63.158 0.15 0.00 40.82 3.18
150 151 1.460305 ATGCGATGGCTCCCCTACT 60.460 57.895 0.15 0.00 40.82 2.57
151 152 1.476007 ATGCGATGGCTCCCCTACTC 61.476 60.000 0.15 0.00 40.82 2.59
152 153 2.873525 GCGATGGCTCCCCTACTCC 61.874 68.421 0.00 0.00 35.83 3.85
153 154 1.457643 CGATGGCTCCCCTACTCCA 60.458 63.158 0.00 0.00 0.00 3.86
165 166 1.759445 CCTACTCCACACTCCATCCTG 59.241 57.143 0.00 0.00 0.00 3.86
166 167 2.461695 CTACTCCACACTCCATCCTGT 58.538 52.381 0.00 0.00 0.00 4.00
171 172 1.839994 CCACACTCCATCCTGTACCAT 59.160 52.381 0.00 0.00 0.00 3.55
194 195 3.006940 TGTTATCATTCCCGACAACAGC 58.993 45.455 0.00 0.00 0.00 4.40
201 202 2.163818 TCCCGACAACAGCTACTTTG 57.836 50.000 0.00 0.00 0.00 2.77
206 207 3.302555 CGACAACAGCTACTTTGACGTA 58.697 45.455 14.28 0.00 36.55 3.57
207 208 3.732219 CGACAACAGCTACTTTGACGTAA 59.268 43.478 14.28 0.00 36.55 3.18
208 209 7.064664 CCGACAACAGCTACTTTGACGTAAG 62.065 48.000 18.23 0.00 38.60 2.34
209 210 3.493503 ACAACAGCTACTTTGACGTAAGC 59.506 43.478 8.48 0.00 45.62 3.09
274 277 1.958579 CATCTTGTATGGGCCACATGG 59.041 52.381 9.28 0.00 40.82 3.66
293 296 4.191033 TGGAATGAACAATTGACCATGC 57.809 40.909 13.59 12.40 0.00 4.06
300 303 1.278537 CAATTGACCATGCCCCCTTT 58.721 50.000 0.00 0.00 0.00 3.11
311 314 4.566488 CCATGCCCCCTTTCTGATATACTC 60.566 50.000 0.00 0.00 0.00 2.59
312 315 2.979678 TGCCCCCTTTCTGATATACTCC 59.020 50.000 0.00 0.00 0.00 3.85
313 316 2.306219 GCCCCCTTTCTGATATACTCCC 59.694 54.545 0.00 0.00 0.00 4.30
315 318 4.243643 CCCCCTTTCTGATATACTCCCTT 58.756 47.826 0.00 0.00 0.00 3.95
318 321 5.549619 CCCCTTTCTGATATACTCCCTTCAT 59.450 44.000 0.00 0.00 0.00 2.57
319 322 6.044871 CCCCTTTCTGATATACTCCCTTCATT 59.955 42.308 0.00 0.00 0.00 2.57
320 323 7.421853 CCCCTTTCTGATATACTCCCTTCATTT 60.422 40.741 0.00 0.00 0.00 2.32
321 324 8.001292 CCCTTTCTGATATACTCCCTTCATTTT 58.999 37.037 0.00 0.00 0.00 1.82
322 325 9.413734 CCTTTCTGATATACTCCCTTCATTTTT 57.586 33.333 0.00 0.00 0.00 1.94
333 336 7.535997 ACTCCCTTCATTTTTATTTACTTCGC 58.464 34.615 0.00 0.00 0.00 4.70
334 337 7.175990 ACTCCCTTCATTTTTATTTACTTCGCA 59.824 33.333 0.00 0.00 0.00 5.10
335 338 8.062065 TCCCTTCATTTTTATTTACTTCGCAT 57.938 30.769 0.00 0.00 0.00 4.73
336 339 9.179909 TCCCTTCATTTTTATTTACTTCGCATA 57.820 29.630 0.00 0.00 0.00 3.14
337 340 9.965824 CCCTTCATTTTTATTTACTTCGCATAT 57.034 29.630 0.00 0.00 0.00 1.78
346 349 9.944663 TTTATTTACTTCGCATATTAGCTTTGG 57.055 29.630 0.00 0.00 0.00 3.28
347 350 6.995511 TTTACTTCGCATATTAGCTTTGGT 57.004 33.333 0.00 0.00 0.00 3.67
348 351 6.598753 TTACTTCGCATATTAGCTTTGGTC 57.401 37.500 0.00 0.00 0.00 4.02
349 352 4.513442 ACTTCGCATATTAGCTTTGGTCA 58.487 39.130 0.00 0.00 0.00 4.02
350 353 4.941263 ACTTCGCATATTAGCTTTGGTCAA 59.059 37.500 0.00 0.00 0.00 3.18
351 354 5.414454 ACTTCGCATATTAGCTTTGGTCAAA 59.586 36.000 0.00 0.00 0.00 2.69
373 376 7.812309 AAAGTCAAGCTTTGTAAACTTTGAC 57.188 32.000 14.76 14.88 45.00 3.18
374 377 6.509418 AGTCAAGCTTTGTAAACTTTGACA 57.491 33.333 20.02 0.00 30.59 3.58
375 378 6.919721 AGTCAAGCTTTGTAAACTTTGACAA 58.080 32.000 20.02 0.88 33.81 3.18
376 379 7.375053 AGTCAAGCTTTGTAAACTTTGACAAA 58.625 30.769 20.02 0.00 41.90 2.83
454 457 8.977267 TCATTGTTGAATGTACATCCATATCA 57.023 30.769 9.23 5.95 40.09 2.15
455 458 9.577222 TCATTGTTGAATGTACATCCATATCAT 57.423 29.630 9.23 0.00 40.09 2.45
546 549 9.522804 GACTTTAGTCAACTCTAATATGTGGAG 57.477 37.037 5.04 0.00 44.18 3.86
547 550 9.036980 ACTTTAGTCAACTCTAATATGTGGAGT 57.963 33.333 0.00 0.00 41.37 3.85
563 566 7.703058 ATGTGGAGTAAATAAAAACAGAGGG 57.297 36.000 0.00 0.00 0.00 4.30
564 567 6.843752 TGTGGAGTAAATAAAAACAGAGGGA 58.156 36.000 0.00 0.00 0.00 4.20
565 568 6.940298 TGTGGAGTAAATAAAAACAGAGGGAG 59.060 38.462 0.00 0.00 0.00 4.30
566 569 6.940867 GTGGAGTAAATAAAAACAGAGGGAGT 59.059 38.462 0.00 0.00 0.00 3.85
567 570 8.098912 GTGGAGTAAATAAAAACAGAGGGAGTA 58.901 37.037 0.00 0.00 0.00 2.59
568 571 8.098912 TGGAGTAAATAAAAACAGAGGGAGTAC 58.901 37.037 0.00 0.00 0.00 2.73
569 572 8.319881 GGAGTAAATAAAAACAGAGGGAGTACT 58.680 37.037 0.00 0.00 0.00 2.73
592 595 7.367159 CTAGAATAGTACTACATCCGTCCTG 57.633 44.000 4.31 0.00 32.85 3.86
593 596 5.071370 AGAATAGTACTACATCCGTCCTGG 58.929 45.833 4.31 0.00 40.09 4.45
594 597 2.822707 AGTACTACATCCGTCCTGGT 57.177 50.000 0.00 0.00 39.52 4.00
595 598 3.097342 AGTACTACATCCGTCCTGGTT 57.903 47.619 0.00 0.00 39.52 3.67
596 599 3.438183 AGTACTACATCCGTCCTGGTTT 58.562 45.455 0.00 0.00 39.52 3.27
597 600 4.603131 AGTACTACATCCGTCCTGGTTTA 58.397 43.478 0.00 0.00 39.52 2.01
598 601 5.206587 AGTACTACATCCGTCCTGGTTTAT 58.793 41.667 0.00 0.00 39.52 1.40
599 602 5.659971 AGTACTACATCCGTCCTGGTTTATT 59.340 40.000 0.00 0.00 39.52 1.40
600 603 4.766375 ACTACATCCGTCCTGGTTTATTG 58.234 43.478 0.00 0.00 39.52 1.90
601 604 2.999331 ACATCCGTCCTGGTTTATTGG 58.001 47.619 0.00 0.00 39.52 3.16
602 605 2.307686 ACATCCGTCCTGGTTTATTGGT 59.692 45.455 0.00 0.00 39.52 3.67
603 606 2.773993 TCCGTCCTGGTTTATTGGTC 57.226 50.000 0.00 0.00 39.52 4.02
604 607 1.279846 TCCGTCCTGGTTTATTGGTCC 59.720 52.381 0.00 0.00 39.52 4.46
605 608 1.280998 CCGTCCTGGTTTATTGGTCCT 59.719 52.381 0.00 0.00 0.00 3.85
606 609 2.290705 CCGTCCTGGTTTATTGGTCCTT 60.291 50.000 0.00 0.00 0.00 3.36
607 610 3.418047 CGTCCTGGTTTATTGGTCCTTT 58.582 45.455 0.00 0.00 0.00 3.11
608 611 3.824443 CGTCCTGGTTTATTGGTCCTTTT 59.176 43.478 0.00 0.00 0.00 2.27
609 612 4.082949 CGTCCTGGTTTATTGGTCCTTTTC 60.083 45.833 0.00 0.00 0.00 2.29
610 613 4.830600 GTCCTGGTTTATTGGTCCTTTTCA 59.169 41.667 0.00 0.00 0.00 2.69
611 614 5.480422 GTCCTGGTTTATTGGTCCTTTTCAT 59.520 40.000 0.00 0.00 0.00 2.57
612 615 6.661805 GTCCTGGTTTATTGGTCCTTTTCATA 59.338 38.462 0.00 0.00 0.00 2.15
613 616 7.177744 GTCCTGGTTTATTGGTCCTTTTCATAA 59.822 37.037 0.00 0.00 0.00 1.90
614 617 7.898636 TCCTGGTTTATTGGTCCTTTTCATAAT 59.101 33.333 0.00 0.00 0.00 1.28
615 618 7.981225 CCTGGTTTATTGGTCCTTTTCATAATG 59.019 37.037 0.00 0.00 0.00 1.90
616 619 8.429237 TGGTTTATTGGTCCTTTTCATAATGT 57.571 30.769 0.00 0.00 0.00 2.71
617 620 8.875168 TGGTTTATTGGTCCTTTTCATAATGTT 58.125 29.630 0.00 0.00 0.00 2.71
618 621 9.719355 GGTTTATTGGTCCTTTTCATAATGTTT 57.281 29.630 0.00 0.00 0.00 2.83
722 725 8.710835 AAGAAAACAACGACATAATTTTTGGT 57.289 26.923 0.00 0.00 0.00 3.67
723 726 9.804758 AAGAAAACAACGACATAATTTTTGGTA 57.195 25.926 0.00 0.00 0.00 3.25
724 727 9.804758 AGAAAACAACGACATAATTTTTGGTAA 57.195 25.926 0.00 0.00 0.00 2.85
729 732 9.296400 ACAACGACATAATTTTTGGTAATATGC 57.704 29.630 0.00 0.00 0.00 3.14
730 733 9.295214 CAACGACATAATTTTTGGTAATATGCA 57.705 29.630 0.00 0.00 0.00 3.96
784 787 7.707774 AAAATTTGACACAAAATACGAAGGG 57.292 32.000 0.00 0.00 0.00 3.95
785 788 6.642707 AATTTGACACAAAATACGAAGGGA 57.357 33.333 0.00 0.00 0.00 4.20
786 789 6.642707 ATTTGACACAAAATACGAAGGGAA 57.357 33.333 0.00 0.00 0.00 3.97
787 790 5.427036 TTGACACAAAATACGAAGGGAAC 57.573 39.130 0.00 0.00 0.00 3.62
805 808 5.582689 GGAACCAATAAACCAGGATGAAG 57.417 43.478 0.00 0.00 39.69 3.02
806 809 4.402474 GGAACCAATAAACCAGGATGAAGG 59.598 45.833 0.00 0.00 39.69 3.46
807 810 4.675063 ACCAATAAACCAGGATGAAGGT 57.325 40.909 0.00 0.00 39.69 3.50
808 811 5.789574 ACCAATAAACCAGGATGAAGGTA 57.210 39.130 0.00 0.00 39.69 3.08
809 812 5.755849 ACCAATAAACCAGGATGAAGGTAG 58.244 41.667 0.00 0.00 39.69 3.18
859 862 5.457140 CATGTAATGCAAGTAACCGTTGTT 58.543 37.500 0.00 0.00 37.62 2.83
860 863 4.849883 TGTAATGCAAGTAACCGTTGTTG 58.150 39.130 0.00 0.00 35.87 3.33
861 864 2.415697 ATGCAAGTAACCGTTGTTGC 57.584 45.000 19.19 19.19 44.53 4.17
862 865 3.928343 GCAAGTAACCGTTGTTGCA 57.072 47.368 20.31 0.00 43.86 4.08
863 866 2.415697 GCAAGTAACCGTTGTTGCAT 57.584 45.000 20.31 0.00 43.86 3.96
864 867 2.738135 GCAAGTAACCGTTGTTGCATT 58.262 42.857 20.31 0.00 43.86 3.56
865 868 3.891324 GCAAGTAACCGTTGTTGCATTA 58.109 40.909 20.31 0.00 43.86 1.90
889 892 2.717580 TAGGCAACGTATATGGCGAG 57.282 50.000 6.63 2.78 46.95 5.03
902 905 6.918022 CGTATATGGCGAGCATGATCTTTATA 59.082 38.462 9.64 5.10 0.00 0.98
903 906 7.096436 CGTATATGGCGAGCATGATCTTTATAC 60.096 40.741 9.64 12.29 0.00 1.47
976 980 8.372877 ACTATCCTAGCTATAGCAATCACATT 57.627 34.615 26.07 5.83 45.16 2.71
977 981 8.256605 ACTATCCTAGCTATAGCAATCACATTG 58.743 37.037 26.07 12.48 45.16 2.82
978 982 6.425210 TCCTAGCTATAGCAATCACATTGT 57.575 37.500 26.07 4.37 45.16 2.71
984 992 8.320396 AGCTATAGCAATCACATTGTATCTTG 57.680 34.615 26.07 0.00 45.16 3.02
1002 1010 4.124970 TCTTGGAGAGATCAATCGCAATG 58.875 43.478 0.00 0.00 0.00 2.82
1003 1011 2.842457 TGGAGAGATCAATCGCAATGG 58.158 47.619 0.00 0.00 0.00 3.16
1004 1012 2.435437 TGGAGAGATCAATCGCAATGGA 59.565 45.455 0.00 0.00 0.00 3.41
1008 1016 1.134007 AGATCAATCGCAATGGAGGCA 60.134 47.619 0.00 0.00 0.00 4.75
1254 1265 3.511595 GCATTGCGGCAGCTGCTA 61.512 61.111 35.82 20.10 45.42 3.49
1299 1310 1.079819 CTTCGTGGCTGTCGTGGAT 60.080 57.895 0.00 0.00 0.00 3.41
1339 1350 2.171725 GGCGCGTACATGGACCTTC 61.172 63.158 8.43 0.00 0.00 3.46
1348 1359 0.742281 CATGGACCTTCACAGCGAGG 60.742 60.000 0.00 0.00 0.00 4.63
1414 1449 3.132801 GCTGCTTCCTGCTGGAGC 61.133 66.667 19.87 19.87 44.24 4.70
1455 1493 4.821589 GGGAAGCTGGTCGGCGAG 62.822 72.222 11.20 0.00 37.29 5.03
1515 1553 2.041620 ACTCAACATGGTGCCCTACATT 59.958 45.455 5.66 0.00 0.00 2.71
1642 6502 5.691754 GCCTTCCAAATACTGTTGTCAAAAG 59.308 40.000 0.83 0.83 0.00 2.27
1647 6507 8.740123 TCCAAATACTGTTGTCAAAAGTTAGA 57.260 30.769 13.66 0.00 0.00 2.10
1715 7325 6.820656 TCTCTTTCTCTTGAACTAATGGATGC 59.179 38.462 0.00 0.00 31.02 3.91
1724 7338 8.212995 TCTTGAACTAATGGATGCTGATGATTA 58.787 33.333 0.00 0.00 0.00 1.75
1740 7354 6.242396 TGATGATTACATGCATGGATGATGA 58.758 36.000 31.07 16.83 36.82 2.92
1747 7361 2.927028 TGCATGGATGATGACCAGAAG 58.073 47.619 0.00 0.00 40.89 2.85
1796 7410 6.488006 GCTGAAATTTCTAGCCCAATCATCTA 59.512 38.462 21.94 0.00 0.00 1.98
1943 7557 1.404851 GGTCAGCACTGAAGCTCTACC 60.405 57.143 1.05 0.00 44.54 3.18
2136 7750 5.455849 CCGACTACGTATTCTTCATGAACAG 59.544 44.000 3.38 0.00 36.23 3.16
2149 7763 2.299993 TGAACAGCATCATCGACTCC 57.700 50.000 0.00 0.00 0.00 3.85
2173 7787 2.640302 GGACGTGGAGCTGCTGAGA 61.640 63.158 7.01 0.00 0.00 3.27
2191 7805 3.648067 TGAGATCCAAGGGTATCATCCAC 59.352 47.826 0.00 0.00 0.00 4.02
2271 7885 1.960040 ATGCTCGATCCCAACAGCGA 61.960 55.000 0.00 0.00 34.39 4.93
2308 7922 1.298859 GGCAGGTGAACGGCTACTTG 61.299 60.000 0.00 0.00 40.37 3.16
2335 7949 2.106683 GTGGAACATTAGGCGCGCT 61.107 57.895 32.29 19.12 44.52 5.92
2337 7951 0.529773 TGGAACATTAGGCGCGCTAG 60.530 55.000 32.29 17.83 0.00 3.42
2502 8116 3.326006 GCACCATCTCCCATCTGATCTAA 59.674 47.826 0.00 0.00 0.00 2.10
2629 8249 3.023119 TCAAGCACTCAAGCCTTTTGAA 58.977 40.909 0.00 0.00 34.23 2.69
2643 8263 5.945784 AGCCTTTTGAATTATCTGCACTGTA 59.054 36.000 0.00 0.00 0.00 2.74
2647 8267 8.246180 CCTTTTGAATTATCTGCACTGTACAAT 58.754 33.333 0.00 0.00 0.00 2.71
2779 8404 5.808540 TCAGTCGATATTTTTCCACTAACCG 59.191 40.000 0.00 0.00 0.00 4.44
2858 9069 4.425578 TGATCAGCGATCAAGGCG 57.574 55.556 15.66 0.00 44.70 5.52
3004 9215 1.379176 CTCGTCAGGGCTCTCCTCA 60.379 63.158 0.00 0.00 46.12 3.86
3083 9664 4.021925 GCCCTGCCTTCCAGTCGT 62.022 66.667 0.00 0.00 40.06 4.34
3095 9676 2.152699 CAGTCGTGACGCCGTCATC 61.153 63.158 24.10 15.97 44.63 2.92
3106 9687 3.250323 CGTCATCTCCAGCGTGCG 61.250 66.667 0.00 0.00 0.00 5.34
3451 10033 1.524002 CGTCAGGATGTGGGCTGAT 59.476 57.895 0.00 0.00 37.40 2.90
3452 10034 0.812811 CGTCAGGATGTGGGCTGATG 60.813 60.000 0.00 0.00 37.40 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.671781 ACACGAACATGAGCAGAGGC 60.672 55.000 0.00 0.00 41.61 4.70
19 20 1.067283 AGACACGAACATGAGCAGAGG 60.067 52.381 0.00 0.00 0.00 3.69
20 21 2.360553 AGACACGAACATGAGCAGAG 57.639 50.000 0.00 0.00 0.00 3.35
21 22 2.407090 CAAGACACGAACATGAGCAGA 58.593 47.619 0.00 0.00 0.00 4.26
22 23 1.462283 CCAAGACACGAACATGAGCAG 59.538 52.381 0.00 0.00 0.00 4.24
23 24 1.202639 ACCAAGACACGAACATGAGCA 60.203 47.619 0.00 0.00 0.00 4.26
24 25 1.461127 GACCAAGACACGAACATGAGC 59.539 52.381 0.00 0.00 0.00 4.26
25 26 1.721389 CGACCAAGACACGAACATGAG 59.279 52.381 0.00 0.00 0.00 2.90
26 27 1.338655 TCGACCAAGACACGAACATGA 59.661 47.619 0.00 0.00 33.20 3.07
27 28 1.778334 TCGACCAAGACACGAACATG 58.222 50.000 0.00 0.00 33.20 3.21
28 29 2.231478 AGATCGACCAAGACACGAACAT 59.769 45.455 0.00 0.00 39.38 2.71
29 30 1.611977 AGATCGACCAAGACACGAACA 59.388 47.619 0.00 0.00 39.38 3.18
30 31 1.986378 CAGATCGACCAAGACACGAAC 59.014 52.381 0.00 0.00 39.38 3.95
31 32 1.067846 CCAGATCGACCAAGACACGAA 60.068 52.381 0.00 0.00 39.38 3.85
32 33 0.526211 CCAGATCGACCAAGACACGA 59.474 55.000 0.00 0.00 40.18 4.35
33 34 0.458543 CCCAGATCGACCAAGACACG 60.459 60.000 0.00 0.00 0.00 4.49
34 35 0.741221 GCCCAGATCGACCAAGACAC 60.741 60.000 0.00 0.00 0.00 3.67
35 36 1.596934 GCCCAGATCGACCAAGACA 59.403 57.895 0.00 0.00 0.00 3.41
36 37 1.519455 CGCCCAGATCGACCAAGAC 60.519 63.158 0.00 0.00 0.00 3.01
37 38 2.892640 CGCCCAGATCGACCAAGA 59.107 61.111 0.00 0.00 0.00 3.02
38 39 2.892425 GCGCCCAGATCGACCAAG 60.892 66.667 0.00 0.00 0.00 3.61
39 40 3.247056 TTGCGCCCAGATCGACCAA 62.247 57.895 4.18 0.00 0.00 3.67
40 41 3.700970 TTGCGCCCAGATCGACCA 61.701 61.111 4.18 0.00 0.00 4.02
41 42 3.195698 GTTGCGCCCAGATCGACC 61.196 66.667 4.18 0.00 0.00 4.79
42 43 3.554692 CGTTGCGCCCAGATCGAC 61.555 66.667 4.18 0.00 0.00 4.20
43 44 4.812476 CCGTTGCGCCCAGATCGA 62.812 66.667 4.18 0.00 0.00 3.59
63 64 4.039357 AGACAGGTGGACGCGTCG 62.039 66.667 30.99 19.78 33.56 5.12
64 65 2.430921 CAGACAGGTGGACGCGTC 60.431 66.667 30.67 30.67 0.00 5.19
65 66 4.664677 GCAGACAGGTGGACGCGT 62.665 66.667 13.85 13.85 0.00 6.01
66 67 4.662961 TGCAGACAGGTGGACGCG 62.663 66.667 3.53 3.53 0.00 6.01
67 68 2.740055 CTGCAGACAGGTGGACGC 60.740 66.667 8.42 0.00 40.48 5.19
73 74 6.266096 TGGTACAAATCACTGCAGACAGGT 62.266 45.833 23.35 12.51 42.22 4.00
74 75 3.806858 TGGTACAAATCACTGCAGACAGG 60.807 47.826 23.35 6.91 42.22 4.00
75 76 3.187227 GTGGTACAAATCACTGCAGACAG 59.813 47.826 23.35 9.98 46.40 3.51
76 77 3.138304 GTGGTACAAATCACTGCAGACA 58.862 45.455 23.35 6.24 44.16 3.41
77 78 3.403038 AGTGGTACAAATCACTGCAGAC 58.597 45.455 23.35 4.92 44.16 3.51
78 79 3.070878 TGAGTGGTACAAATCACTGCAGA 59.929 43.478 23.35 0.00 44.16 4.26
79 80 3.402110 TGAGTGGTACAAATCACTGCAG 58.598 45.455 13.48 13.48 44.16 4.41
80 81 3.483808 TGAGTGGTACAAATCACTGCA 57.516 42.857 7.16 3.66 44.16 4.41
81 82 6.494893 TTTATGAGTGGTACAAATCACTGC 57.505 37.500 1.76 0.00 44.16 4.40
82 83 8.338259 GCTATTTATGAGTGGTACAAATCACTG 58.662 37.037 1.76 0.00 44.16 3.66
83 84 8.046708 TGCTATTTATGAGTGGTACAAATCACT 58.953 33.333 1.76 2.22 44.16 3.41
84 85 8.122952 GTGCTATTTATGAGTGGTACAAATCAC 58.877 37.037 1.76 0.00 44.16 3.06
85 86 7.826744 TGTGCTATTTATGAGTGGTACAAATCA 59.173 33.333 2.30 2.30 44.16 2.57
86 87 8.208718 TGTGCTATTTATGAGTGGTACAAATC 57.791 34.615 0.00 0.00 44.16 2.17
87 88 8.574251 TTGTGCTATTTATGAGTGGTACAAAT 57.426 30.769 0.00 0.00 44.16 2.32
88 89 7.987750 TTGTGCTATTTATGAGTGGTACAAA 57.012 32.000 0.00 0.00 44.16 2.83
89 90 7.663905 AGTTTGTGCTATTTATGAGTGGTACAA 59.336 33.333 0.00 0.00 44.16 2.41
90 91 7.165485 AGTTTGTGCTATTTATGAGTGGTACA 58.835 34.615 0.00 0.00 0.00 2.90
91 92 7.611213 AGTTTGTGCTATTTATGAGTGGTAC 57.389 36.000 0.00 0.00 0.00 3.34
93 94 9.547753 CTATAGTTTGTGCTATTTATGAGTGGT 57.452 33.333 0.00 0.00 34.00 4.16
94 95 9.764363 TCTATAGTTTGTGCTATTTATGAGTGG 57.236 33.333 0.00 0.00 34.00 4.00
105 106 9.405587 GCATTTGTTTTTCTATAGTTTGTGCTA 57.594 29.630 0.00 0.00 0.00 3.49
106 107 7.925483 TGCATTTGTTTTTCTATAGTTTGTGCT 59.075 29.630 0.00 0.00 0.00 4.40
107 108 8.071122 TGCATTTGTTTTTCTATAGTTTGTGC 57.929 30.769 0.00 0.00 0.00 4.57
109 110 8.711457 GCATGCATTTGTTTTTCTATAGTTTGT 58.289 29.630 14.21 0.00 0.00 2.83
110 111 7.894247 CGCATGCATTTGTTTTTCTATAGTTTG 59.106 33.333 19.57 0.00 0.00 2.93
111 112 7.812191 TCGCATGCATTTGTTTTTCTATAGTTT 59.188 29.630 19.57 0.00 0.00 2.66
112 113 7.312154 TCGCATGCATTTGTTTTTCTATAGTT 58.688 30.769 19.57 0.00 0.00 2.24
113 114 6.851609 TCGCATGCATTTGTTTTTCTATAGT 58.148 32.000 19.57 0.00 0.00 2.12
114 115 7.096353 CCATCGCATGCATTTGTTTTTCTATAG 60.096 37.037 19.57 0.00 0.00 1.31
115 116 6.696583 CCATCGCATGCATTTGTTTTTCTATA 59.303 34.615 19.57 0.00 0.00 1.31
116 117 5.521010 CCATCGCATGCATTTGTTTTTCTAT 59.479 36.000 19.57 0.00 0.00 1.98
117 118 4.863689 CCATCGCATGCATTTGTTTTTCTA 59.136 37.500 19.57 0.00 0.00 2.10
118 119 3.680937 CCATCGCATGCATTTGTTTTTCT 59.319 39.130 19.57 0.00 0.00 2.52
119 120 3.725600 GCCATCGCATGCATTTGTTTTTC 60.726 43.478 19.57 0.00 34.03 2.29
120 121 2.160022 GCCATCGCATGCATTTGTTTTT 59.840 40.909 19.57 0.00 34.03 1.94
121 122 1.733360 GCCATCGCATGCATTTGTTTT 59.267 42.857 19.57 0.00 34.03 2.43
122 123 1.066716 AGCCATCGCATGCATTTGTTT 60.067 42.857 19.57 0.00 37.52 2.83
123 124 0.533491 AGCCATCGCATGCATTTGTT 59.467 45.000 19.57 0.00 37.52 2.83
124 125 0.101759 GAGCCATCGCATGCATTTGT 59.898 50.000 19.57 0.00 37.52 2.83
125 126 0.596600 GGAGCCATCGCATGCATTTG 60.597 55.000 19.57 11.22 37.52 2.32
126 127 1.737816 GGAGCCATCGCATGCATTT 59.262 52.632 19.57 0.00 37.52 2.32
127 128 2.198287 GGGAGCCATCGCATGCATT 61.198 57.895 19.57 0.21 38.25 3.56
128 129 2.596631 GGGAGCCATCGCATGCAT 60.597 61.111 19.57 7.64 38.25 3.96
129 130 4.881440 GGGGAGCCATCGCATGCA 62.881 66.667 19.57 5.34 40.07 3.96
130 131 3.182590 TAGGGGAGCCATCGCATGC 62.183 63.158 7.91 7.91 40.07 4.06
131 132 1.302033 GTAGGGGAGCCATCGCATG 60.302 63.158 0.00 0.00 40.07 4.06
132 133 1.460305 AGTAGGGGAGCCATCGCAT 60.460 57.895 0.00 0.00 40.07 4.73
133 134 2.041922 AGTAGGGGAGCCATCGCA 60.042 61.111 0.00 0.00 40.07 5.10
134 135 2.737830 GAGTAGGGGAGCCATCGC 59.262 66.667 0.00 0.00 37.65 4.58
135 136 1.457643 TGGAGTAGGGGAGCCATCG 60.458 63.158 0.00 0.00 0.00 3.84
136 137 0.691078 TGTGGAGTAGGGGAGCCATC 60.691 60.000 0.00 0.00 32.26 3.51
137 138 0.983378 GTGTGGAGTAGGGGAGCCAT 60.983 60.000 0.00 0.00 32.26 4.40
138 139 1.612442 GTGTGGAGTAGGGGAGCCA 60.612 63.158 0.00 0.00 0.00 4.75
139 140 1.306226 AGTGTGGAGTAGGGGAGCC 60.306 63.158 0.00 0.00 0.00 4.70
140 141 1.331399 GGAGTGTGGAGTAGGGGAGC 61.331 65.000 0.00 0.00 0.00 4.70
141 142 0.041238 TGGAGTGTGGAGTAGGGGAG 59.959 60.000 0.00 0.00 0.00 4.30
142 143 0.716591 ATGGAGTGTGGAGTAGGGGA 59.283 55.000 0.00 0.00 0.00 4.81
143 144 1.123928 GATGGAGTGTGGAGTAGGGG 58.876 60.000 0.00 0.00 0.00 4.79
144 145 1.123928 GGATGGAGTGTGGAGTAGGG 58.876 60.000 0.00 0.00 0.00 3.53
145 146 1.759445 CAGGATGGAGTGTGGAGTAGG 59.241 57.143 0.00 0.00 0.00 3.18
146 147 2.461695 ACAGGATGGAGTGTGGAGTAG 58.538 52.381 0.00 0.00 43.62 2.57
147 148 2.623418 ACAGGATGGAGTGTGGAGTA 57.377 50.000 0.00 0.00 43.62 2.59
148 149 2.180276 GTACAGGATGGAGTGTGGAGT 58.820 52.381 0.00 0.00 43.62 3.85
149 150 1.482593 GGTACAGGATGGAGTGTGGAG 59.517 57.143 0.00 0.00 43.62 3.86
150 151 1.203250 TGGTACAGGATGGAGTGTGGA 60.203 52.381 0.00 0.00 43.62 4.02
151 152 1.275666 TGGTACAGGATGGAGTGTGG 58.724 55.000 0.00 0.00 43.62 4.17
165 166 6.460781 TGTCGGGAATGATAACATATGGTAC 58.539 40.000 1.65 0.00 35.50 3.34
166 167 6.673839 TGTCGGGAATGATAACATATGGTA 57.326 37.500 2.22 2.22 35.50 3.25
171 172 4.814234 GCTGTTGTCGGGAATGATAACATA 59.186 41.667 6.54 0.00 45.09 2.29
194 195 6.757010 AGGAATATGTGCTTACGTCAAAGTAG 59.243 38.462 0.00 0.00 0.00 2.57
201 202 2.471743 GCGAGGAATATGTGCTTACGTC 59.528 50.000 0.00 0.00 0.00 4.34
207 208 1.765314 AGGAAGCGAGGAATATGTGCT 59.235 47.619 0.00 0.00 37.53 4.40
208 209 2.139118 GAGGAAGCGAGGAATATGTGC 58.861 52.381 0.00 0.00 0.00 4.57
209 210 3.388308 CTGAGGAAGCGAGGAATATGTG 58.612 50.000 0.00 0.00 0.00 3.21
248 249 1.699634 GGCCCATACAAGATGCTAGGA 59.300 52.381 0.00 0.00 0.00 2.94
274 277 3.524541 GGGCATGGTCAATTGTTCATTC 58.475 45.455 5.13 5.33 0.00 2.67
278 281 0.536724 GGGGGCATGGTCAATTGTTC 59.463 55.000 5.13 0.32 0.00 3.18
279 282 0.116940 AGGGGGCATGGTCAATTGTT 59.883 50.000 5.13 0.00 0.00 2.83
285 288 1.139498 TCAGAAAGGGGGCATGGTCA 61.139 55.000 0.00 0.00 0.00 4.02
293 296 3.875571 AGGGAGTATATCAGAAAGGGGG 58.124 50.000 0.00 0.00 0.00 5.40
311 314 9.965824 ATATGCGAAGTAAATAAAAATGAAGGG 57.034 29.630 0.00 0.00 0.00 3.95
320 323 9.944663 CCAAAGCTAATATGCGAAGTAAATAAA 57.055 29.630 0.00 0.00 38.13 1.40
321 324 9.116067 ACCAAAGCTAATATGCGAAGTAAATAA 57.884 29.630 0.00 0.00 38.13 1.40
322 325 8.671384 ACCAAAGCTAATATGCGAAGTAAATA 57.329 30.769 0.00 0.00 38.13 1.40
323 326 7.282224 TGACCAAAGCTAATATGCGAAGTAAAT 59.718 33.333 0.00 0.00 38.13 1.40
324 327 6.596106 TGACCAAAGCTAATATGCGAAGTAAA 59.404 34.615 0.00 0.00 38.13 2.01
325 328 6.110033 TGACCAAAGCTAATATGCGAAGTAA 58.890 36.000 0.00 0.00 38.13 2.24
326 329 5.666462 TGACCAAAGCTAATATGCGAAGTA 58.334 37.500 0.00 0.00 38.13 2.24
327 330 4.513442 TGACCAAAGCTAATATGCGAAGT 58.487 39.130 0.00 0.00 38.13 3.01
328 331 5.484173 TTGACCAAAGCTAATATGCGAAG 57.516 39.130 0.00 0.00 38.13 3.79
329 332 5.879237 CTTTGACCAAAGCTAATATGCGAA 58.121 37.500 9.25 0.00 40.94 4.70
330 333 5.484173 CTTTGACCAAAGCTAATATGCGA 57.516 39.130 9.25 0.00 40.94 5.10
350 353 6.919721 TGTCAAAGTTTACAAAGCTTGACTT 58.080 32.000 19.48 3.36 39.29 3.01
351 354 6.509418 TGTCAAAGTTTACAAAGCTTGACT 57.491 33.333 19.48 0.00 39.29 3.41
352 355 7.575332 TTTGTCAAAGTTTACAAAGCTTGAC 57.425 32.000 0.00 15.49 39.88 3.18
429 432 8.977267 TGATATGGATGTACATTCAACAATGA 57.023 30.769 20.67 6.72 41.97 2.57
520 523 9.522804 CTCCACATATTAGAGTTGACTAAAGTC 57.477 37.037 3.08 3.08 44.97 3.01
521 524 9.036980 ACTCCACATATTAGAGTTGACTAAAGT 57.963 33.333 0.00 0.00 37.60 2.66
537 540 9.408648 CCCTCTGTTTTTATTTACTCCACATAT 57.591 33.333 0.00 0.00 0.00 1.78
538 541 8.607713 TCCCTCTGTTTTTATTTACTCCACATA 58.392 33.333 0.00 0.00 0.00 2.29
539 542 7.466804 TCCCTCTGTTTTTATTTACTCCACAT 58.533 34.615 0.00 0.00 0.00 3.21
540 543 6.843752 TCCCTCTGTTTTTATTTACTCCACA 58.156 36.000 0.00 0.00 0.00 4.17
541 544 6.940867 ACTCCCTCTGTTTTTATTTACTCCAC 59.059 38.462 0.00 0.00 0.00 4.02
542 545 7.086685 ACTCCCTCTGTTTTTATTTACTCCA 57.913 36.000 0.00 0.00 0.00 3.86
543 546 8.319881 AGTACTCCCTCTGTTTTTATTTACTCC 58.680 37.037 0.00 0.00 0.00 3.85
551 554 9.765295 ACTATTCTAGTACTCCCTCTGTTTTTA 57.235 33.333 0.00 0.00 37.23 1.52
552 555 8.667592 ACTATTCTAGTACTCCCTCTGTTTTT 57.332 34.615 0.00 0.00 37.23 1.94
566 569 8.093307 CAGGACGGATGTAGTACTATTCTAGTA 58.907 40.741 5.75 0.00 40.14 1.82
567 570 6.935771 CAGGACGGATGTAGTACTATTCTAGT 59.064 42.308 5.75 10.30 42.68 2.57
568 571 6.372103 CCAGGACGGATGTAGTACTATTCTAG 59.628 46.154 5.75 7.72 36.56 2.43
569 572 6.183361 ACCAGGACGGATGTAGTACTATTCTA 60.183 42.308 5.75 0.00 38.63 2.10
570 573 5.071370 CCAGGACGGATGTAGTACTATTCT 58.929 45.833 5.75 0.00 36.56 2.40
571 574 4.826183 ACCAGGACGGATGTAGTACTATTC 59.174 45.833 5.75 6.57 38.63 1.75
572 575 4.801164 ACCAGGACGGATGTAGTACTATT 58.199 43.478 5.75 0.00 38.63 1.73
573 576 4.450305 ACCAGGACGGATGTAGTACTAT 57.550 45.455 5.75 0.00 38.63 2.12
574 577 3.939740 ACCAGGACGGATGTAGTACTA 57.060 47.619 0.00 0.00 38.63 1.82
575 578 2.822707 ACCAGGACGGATGTAGTACT 57.177 50.000 0.00 0.00 38.63 2.73
576 579 3.881937 AAACCAGGACGGATGTAGTAC 57.118 47.619 0.00 0.00 38.63 2.73
577 580 5.163385 CCAATAAACCAGGACGGATGTAGTA 60.163 44.000 0.00 0.00 38.63 1.82
578 581 4.383770 CCAATAAACCAGGACGGATGTAGT 60.384 45.833 0.00 0.00 38.63 2.73
579 582 4.127171 CCAATAAACCAGGACGGATGTAG 58.873 47.826 0.00 0.00 38.63 2.74
580 583 3.520317 ACCAATAAACCAGGACGGATGTA 59.480 43.478 0.00 0.00 38.63 2.29
581 584 2.307686 ACCAATAAACCAGGACGGATGT 59.692 45.455 0.00 0.00 38.63 3.06
582 585 2.943033 GACCAATAAACCAGGACGGATG 59.057 50.000 0.00 0.00 38.63 3.51
583 586 2.092592 GGACCAATAAACCAGGACGGAT 60.093 50.000 0.00 0.00 38.63 4.18
584 587 1.279846 GGACCAATAAACCAGGACGGA 59.720 52.381 0.00 0.00 38.63 4.69
585 588 1.280998 AGGACCAATAAACCAGGACGG 59.719 52.381 0.00 0.00 42.50 4.79
586 589 2.781681 AGGACCAATAAACCAGGACG 57.218 50.000 0.00 0.00 0.00 4.79
587 590 4.830600 TGAAAAGGACCAATAAACCAGGAC 59.169 41.667 0.00 0.00 0.00 3.85
588 591 5.068215 TGAAAAGGACCAATAAACCAGGA 57.932 39.130 0.00 0.00 0.00 3.86
589 592 7.475137 TTATGAAAAGGACCAATAAACCAGG 57.525 36.000 0.00 0.00 0.00 4.45
590 593 8.531146 ACATTATGAAAAGGACCAATAAACCAG 58.469 33.333 0.00 0.00 0.00 4.00
591 594 8.429237 ACATTATGAAAAGGACCAATAAACCA 57.571 30.769 0.00 0.00 0.00 3.67
592 595 9.719355 AAACATTATGAAAAGGACCAATAAACC 57.281 29.630 0.00 0.00 0.00 3.27
696 699 9.804758 ACCAAAAATTATGTCGTTGTTTTCTTA 57.195 25.926 0.00 0.00 0.00 2.10
697 700 8.710835 ACCAAAAATTATGTCGTTGTTTTCTT 57.289 26.923 0.00 0.00 0.00 2.52
698 701 9.804758 TTACCAAAAATTATGTCGTTGTTTTCT 57.195 25.926 0.00 0.00 0.00 2.52
703 706 9.296400 GCATATTACCAAAAATTATGTCGTTGT 57.704 29.630 0.00 0.00 0.00 3.32
704 707 9.295214 TGCATATTACCAAAAATTATGTCGTTG 57.705 29.630 0.00 0.00 0.00 4.10
758 761 9.250624 CCCTTCGTATTTTGTGTCAAATTTTAA 57.749 29.630 0.00 0.00 0.00 1.52
759 762 8.630917 TCCCTTCGTATTTTGTGTCAAATTTTA 58.369 29.630 0.00 0.00 0.00 1.52
760 763 7.493367 TCCCTTCGTATTTTGTGTCAAATTTT 58.507 30.769 0.00 0.00 0.00 1.82
761 764 7.045126 TCCCTTCGTATTTTGTGTCAAATTT 57.955 32.000 0.00 0.00 0.00 1.82
762 765 6.642707 TCCCTTCGTATTTTGTGTCAAATT 57.357 33.333 0.00 0.00 0.00 1.82
763 766 6.443792 GTTCCCTTCGTATTTTGTGTCAAAT 58.556 36.000 0.00 0.00 0.00 2.32
764 767 5.221087 GGTTCCCTTCGTATTTTGTGTCAAA 60.221 40.000 0.00 0.00 0.00 2.69
765 768 4.276431 GGTTCCCTTCGTATTTTGTGTCAA 59.724 41.667 0.00 0.00 0.00 3.18
766 769 3.816523 GGTTCCCTTCGTATTTTGTGTCA 59.183 43.478 0.00 0.00 0.00 3.58
767 770 3.816523 TGGTTCCCTTCGTATTTTGTGTC 59.183 43.478 0.00 0.00 0.00 3.67
768 771 3.822940 TGGTTCCCTTCGTATTTTGTGT 58.177 40.909 0.00 0.00 0.00 3.72
769 772 4.839668 TTGGTTCCCTTCGTATTTTGTG 57.160 40.909 0.00 0.00 0.00 3.33
770 773 7.372714 GTTTATTGGTTCCCTTCGTATTTTGT 58.627 34.615 0.00 0.00 0.00 2.83
771 774 6.809689 GGTTTATTGGTTCCCTTCGTATTTTG 59.190 38.462 0.00 0.00 0.00 2.44
772 775 6.494146 TGGTTTATTGGTTCCCTTCGTATTTT 59.506 34.615 0.00 0.00 0.00 1.82
773 776 6.011481 TGGTTTATTGGTTCCCTTCGTATTT 58.989 36.000 0.00 0.00 0.00 1.40
774 777 5.572252 TGGTTTATTGGTTCCCTTCGTATT 58.428 37.500 0.00 0.00 0.00 1.89
775 778 5.182169 TGGTTTATTGGTTCCCTTCGTAT 57.818 39.130 0.00 0.00 0.00 3.06
776 779 4.566070 CCTGGTTTATTGGTTCCCTTCGTA 60.566 45.833 0.00 0.00 0.00 3.43
777 780 3.418047 CTGGTTTATTGGTTCCCTTCGT 58.582 45.455 0.00 0.00 0.00 3.85
778 781 2.752903 CCTGGTTTATTGGTTCCCTTCG 59.247 50.000 0.00 0.00 0.00 3.79
779 782 4.042271 TCCTGGTTTATTGGTTCCCTTC 57.958 45.455 0.00 0.00 0.00 3.46
780 783 4.045334 TCATCCTGGTTTATTGGTTCCCTT 59.955 41.667 0.00 0.00 0.00 3.95
781 784 3.596046 TCATCCTGGTTTATTGGTTCCCT 59.404 43.478 0.00 0.00 0.00 4.20
782 785 3.976015 TCATCCTGGTTTATTGGTTCCC 58.024 45.455 0.00 0.00 0.00 3.97
783 786 4.402474 CCTTCATCCTGGTTTATTGGTTCC 59.598 45.833 0.00 0.00 0.00 3.62
784 787 5.016831 ACCTTCATCCTGGTTTATTGGTTC 58.983 41.667 0.00 0.00 31.62 3.62
785 788 5.010708 ACCTTCATCCTGGTTTATTGGTT 57.989 39.130 0.00 0.00 31.62 3.67
786 789 4.675063 ACCTTCATCCTGGTTTATTGGT 57.325 40.909 0.00 0.00 31.62 3.67
787 790 5.755849 ACTACCTTCATCCTGGTTTATTGG 58.244 41.667 0.00 0.00 37.74 3.16
790 793 9.220906 TGTTATACTACCTTCATCCTGGTTTAT 57.779 33.333 0.00 0.00 37.74 1.40
791 794 8.612486 TGTTATACTACCTTCATCCTGGTTTA 57.388 34.615 0.00 0.00 37.74 2.01
792 795 7.504926 TGTTATACTACCTTCATCCTGGTTT 57.495 36.000 0.00 0.00 37.74 3.27
793 796 7.691993 ATGTTATACTACCTTCATCCTGGTT 57.308 36.000 0.00 0.00 37.74 3.67
794 797 8.792830 TTATGTTATACTACCTTCATCCTGGT 57.207 34.615 0.00 0.00 40.12 4.00
795 798 9.490379 GTTTATGTTATACTACCTTCATCCTGG 57.510 37.037 0.00 0.00 0.00 4.45
976 980 4.342092 TGCGATTGATCTCTCCAAGATACA 59.658 41.667 0.00 0.00 45.06 2.29
977 981 4.876125 TGCGATTGATCTCTCCAAGATAC 58.124 43.478 0.00 0.00 45.06 2.24
978 982 5.535753 TTGCGATTGATCTCTCCAAGATA 57.464 39.130 0.00 0.00 45.06 1.98
984 992 3.065655 CTCCATTGCGATTGATCTCTCC 58.934 50.000 0.00 0.00 0.00 3.71
1019 1027 0.034059 CCACGTCCTCTTGCTTCTGT 59.966 55.000 0.00 0.00 0.00 3.41
1023 1031 1.071471 CACCCACGTCCTCTTGCTT 59.929 57.895 0.00 0.00 0.00 3.91
1103 1114 1.139734 ACGCGGTAGATGCAGTGAG 59.860 57.895 12.47 0.00 0.00 3.51
1214 1225 0.607489 GTGCTTGTGCTCCTCCATGT 60.607 55.000 0.00 0.00 40.48 3.21
1239 1250 3.197790 CGTAGCAGCTGCCGCAAT 61.198 61.111 34.39 18.55 43.38 3.56
1287 1298 1.153549 GACCTCATCCACGACAGCC 60.154 63.158 0.00 0.00 0.00 4.85
1299 1310 1.979155 CAGCTCCTCCGTGACCTCA 60.979 63.158 0.00 0.00 0.00 3.86
1354 1368 4.044439 CTGCTCCCTGCCAAGGCT 62.044 66.667 12.96 0.00 42.96 4.58
1355 1369 3.875510 AACTGCTCCCTGCCAAGGC 62.876 63.158 3.61 3.61 42.96 4.35
1357 1371 1.676967 GGAACTGCTCCCTGCCAAG 60.677 63.158 0.00 0.00 42.00 3.61
1358 1372 2.156098 AGGAACTGCTCCCTGCCAA 61.156 57.895 0.00 0.00 46.81 4.52
1370 1405 2.133520 AGATCATCATGGCCAGGAACT 58.866 47.619 25.94 17.33 43.88 3.01
1414 1449 2.821366 GGCCGTGCACCTCATCAG 60.821 66.667 12.15 0.00 0.00 2.90
1455 1493 1.159098 TGGGGTCGTTGTTTGCGTAC 61.159 55.000 0.00 0.00 0.00 3.67
1462 1500 1.882352 GCTGAAGATGGGGTCGTTGTT 60.882 52.381 0.00 0.00 0.00 2.83
1515 1553 1.227060 CATGAGCATGTCTCGCCGA 60.227 57.895 11.03 0.00 44.86 5.54
1702 7312 7.734924 TGTAATCATCAGCATCCATTAGTTC 57.265 36.000 0.00 0.00 0.00 3.01
1715 7325 6.374333 TCATCATCCATGCATGTAATCATCAG 59.626 38.462 24.58 6.69 31.70 2.90
1724 7338 2.173996 TCTGGTCATCATCCATGCATGT 59.826 45.455 24.58 4.88 34.26 3.21
1747 7361 3.181520 CCATTCGGTTGATGAAGTCGTTC 60.182 47.826 0.00 0.00 0.00 3.95
1796 7410 2.037847 GCCTGGTGGAAATGGGCT 59.962 61.111 0.00 0.00 39.68 5.19
1943 7557 1.470098 CTTGAACTGAATCCCGGCTTG 59.530 52.381 0.00 0.00 0.00 4.01
2122 7736 5.007430 GTCGATGATGCTGTTCATGAAGAAT 59.993 40.000 8.80 0.00 38.76 2.40
2136 7750 1.493950 CTTGGCGGAGTCGATGATGC 61.494 60.000 0.00 0.00 39.00 3.91
2149 7763 4.379243 AGCTCCACGTCCTTGGCG 62.379 66.667 0.00 0.00 36.48 5.69
2173 7787 3.433598 CGTTGTGGATGATACCCTTGGAT 60.434 47.826 0.00 0.00 0.00 3.41
2215 7829 0.682532 TGTTGAACAGCTTGGCCACA 60.683 50.000 3.88 0.00 0.00 4.17
2281 7895 4.254709 TTCACCTGCCGCTGCACT 62.255 61.111 0.00 0.00 44.23 4.40
2335 7949 4.030216 TGAAGTATGTGTGGATGAGGCTA 58.970 43.478 0.00 0.00 0.00 3.93
2337 7951 3.201290 CTGAAGTATGTGTGGATGAGGC 58.799 50.000 0.00 0.00 0.00 4.70
2502 8116 1.600485 CAGTAAGTTTTTGCGGTCGGT 59.400 47.619 0.00 0.00 0.00 4.69
2779 8404 5.448632 CCGATGCTTTGACCAGGTAATAAAC 60.449 44.000 0.00 0.00 0.00 2.01
2807 8432 2.102578 GATGCACCAGCCCAAAAGTAT 58.897 47.619 0.00 0.00 41.13 2.12
2849 9060 0.031994 GAGGAGAGAGCGCCTTGATC 59.968 60.000 2.29 0.00 45.01 2.92
2850 9061 0.396974 AGAGGAGAGAGCGCCTTGAT 60.397 55.000 2.29 0.00 45.01 2.57
2851 9062 0.613292 AAGAGGAGAGAGCGCCTTGA 60.613 55.000 2.29 0.00 45.01 3.02
2852 9063 0.179113 GAAGAGGAGAGAGCGCCTTG 60.179 60.000 2.29 0.00 45.01 3.61
2853 9064 1.662438 CGAAGAGGAGAGAGCGCCTT 61.662 60.000 2.29 0.00 45.01 4.35
2855 9066 2.411290 CGAAGAGGAGAGAGCGCC 59.589 66.667 2.29 0.00 0.00 6.53
2856 9067 2.278531 GCGAAGAGGAGAGAGCGC 60.279 66.667 0.00 0.00 37.60 5.92
2857 9068 1.063972 CAGCGAAGAGGAGAGAGCG 59.936 63.158 0.00 0.00 0.00 5.03
2858 9069 1.226945 GCAGCGAAGAGGAGAGAGC 60.227 63.158 0.00 0.00 0.00 4.09
2859 9070 1.063972 CGCAGCGAAGAGGAGAGAG 59.936 63.158 9.98 0.00 0.00 3.20
2860 9071 3.191836 CGCAGCGAAGAGGAGAGA 58.808 61.111 9.98 0.00 0.00 3.10
3083 9664 2.885113 CTGGAGATGACGGCGTCA 59.115 61.111 40.35 40.35 46.90 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.