Multiple sequence alignment - TraesCS6A01G028100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G028100 chr6A 100.000 5692 0 0 1 5692 14378113 14372422 0.000000e+00 10512.0
1 TraesCS6A01G028100 chr6A 79.083 545 100 11 3575 4108 2401430 2401971 4.190000e-96 363.0
2 TraesCS6A01G028100 chr6D 94.871 2866 114 11 639 3489 13101760 13098913 0.000000e+00 4447.0
3 TraesCS6A01G028100 chr6D 95.972 1887 57 9 3491 5363 13098531 13096650 0.000000e+00 3046.0
4 TraesCS6A01G028100 chr6D 90.239 461 31 4 1 447 13102561 13102101 1.770000e-164 590.0
5 TraesCS6A01G028100 chr6D 80.848 778 117 20 3348 4108 3590296 3591058 2.960000e-162 582.0
6 TraesCS6A01G028100 chr6D 76.425 912 146 49 1001 1890 3587574 3588438 4.070000e-116 429.0
7 TraesCS6A01G028100 chr6D 87.556 225 12 4 5406 5623 13096652 13096437 4.400000e-61 246.0
8 TraesCS6A01G028100 chr6D 83.478 115 15 1 4876 4990 13097022 13096912 2.810000e-18 104.0
9 TraesCS6A01G028100 chr6B 94.142 2424 124 10 639 3046 23638897 23641318 0.000000e+00 3674.0
10 TraesCS6A01G028100 chr6B 90.483 2112 146 29 3538 5623 23641944 23644026 0.000000e+00 2736.0
11 TraesCS6A01G028100 chr6B 82.798 872 128 15 2197 3054 7102015 7101152 0.000000e+00 760.0
12 TraesCS6A01G028100 chr6B 82.569 872 130 15 2197 3054 7154254 7153391 0.000000e+00 749.0
13 TraesCS6A01G028100 chr6B 94.297 491 21 4 3044 3530 23641407 23641894 0.000000e+00 745.0
14 TraesCS6A01G028100 chr6B 82.624 846 133 9 2197 3030 6850486 6851329 0.000000e+00 736.0
15 TraesCS6A01G028100 chr6B 79.437 1031 166 33 3106 4108 7153027 7152015 0.000000e+00 688.0
16 TraesCS6A01G028100 chr6B 78.684 1018 179 23 3111 4108 6851456 6852455 1.340000e-180 643.0
17 TraesCS6A01G028100 chr6B 80.617 583 83 21 3544 4108 7100259 7099689 1.900000e-114 424.0
18 TraesCS6A01G028100 chr6B 80.000 615 87 28 1326 1926 6849388 6849980 6.820000e-114 422.0
19 TraesCS6A01G028100 chr6B 78.774 636 91 33 1312 1926 7155536 7154924 2.490000e-103 387.0
20 TraesCS6A01G028100 chr6B 88.933 253 28 0 2197 2449 7110190 7109938 4.280000e-81 313.0
21 TraesCS6A01G028100 chr6B 80.230 435 64 19 3544 3968 7109067 7108645 1.990000e-79 307.0
22 TraesCS6A01G028100 chr6B 79.302 430 75 10 3106 3528 7100788 7100366 7.220000e-74 289.0
23 TraesCS6A01G028100 chr6B 79.302 430 75 10 3106 3528 7106850 7106428 7.220000e-74 289.0
24 TraesCS6A01G028100 chr6B 87.931 174 15 1 201 374 23638326 23638493 3.480000e-47 200.0
25 TraesCS6A01G028100 chr6B 90.141 142 5 4 8 147 23638089 23638223 5.860000e-40 176.0
26 TraesCS6A01G028100 chr6B 82.394 142 25 0 4459 4600 6852784 6852925 2.150000e-24 124.0
27 TraesCS6A01G028100 chr6B 84.426 122 10 2 4875 4991 23643393 23643510 1.680000e-20 111.0
28 TraesCS6A01G028100 chr6B 89.024 82 9 0 4459 4540 6878039 6878120 1.010000e-17 102.0
29 TraesCS6A01G028100 chr4A 87.931 58 4 3 41 96 102863973 102864029 1.320000e-06 65.8
30 TraesCS6A01G028100 chr7B 100.000 30 0 0 203 232 654325955 654325926 7.970000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G028100 chr6A 14372422 14378113 5691 True 10512.000000 10512 100.000000 1 5692 1 chr6A.!!$R1 5691
1 TraesCS6A01G028100 chr6A 2401430 2401971 541 False 363.000000 363 79.083000 3575 4108 1 chr6A.!!$F1 533
2 TraesCS6A01G028100 chr6D 13096437 13102561 6124 True 1686.600000 4447 90.423200 1 5623 5 chr6D.!!$R1 5622
3 TraesCS6A01G028100 chr6D 3587574 3591058 3484 False 505.500000 582 78.636500 1001 4108 2 chr6D.!!$F1 3107
4 TraesCS6A01G028100 chr6B 23638089 23644026 5937 False 1273.666667 3674 90.236667 8 5623 6 chr6B.!!$F3 5615
5 TraesCS6A01G028100 chr6B 7152015 7155536 3521 True 608.000000 749 80.260000 1312 4108 3 chr6B.!!$R3 2796
6 TraesCS6A01G028100 chr6B 7099689 7102015 2326 True 491.000000 760 80.905667 2197 4108 3 chr6B.!!$R1 1911
7 TraesCS6A01G028100 chr6B 6849388 6852925 3537 False 481.250000 736 80.925500 1326 4600 4 chr6B.!!$F2 3274
8 TraesCS6A01G028100 chr6B 7106428 7110190 3762 True 303.000000 313 82.821667 2197 3968 3 chr6B.!!$R2 1771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 851 0.401979 TTCCCTCCCTCCATCCATCC 60.402 60.000 0.00 0.00 0.00 3.51 F
1209 1511 0.179702 TGGCTATGAGGAAGCTGCAG 59.820 55.000 10.11 10.11 39.97 4.41 F
1626 1938 0.682209 ATGACTTGGCTGGTGATGGC 60.682 55.000 0.00 0.00 0.00 4.40 F
1856 2174 3.221771 AGCACTAGTCTATGAGCTCCAG 58.778 50.000 12.15 8.68 0.00 3.86 F
3030 4702 4.916041 ATCAAGAACCAGATTGAGGTCA 57.084 40.909 0.00 0.00 38.76 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2367 1.476891 GGTGAGTCATCTGCTCCGTTA 59.523 52.381 0.0 0.0 32.31 3.18 R
2451 3232 1.603802 CGAACTGCCAAGACAATGTGT 59.396 47.619 0.0 0.0 0.00 3.72 R
2845 4517 4.162888 TGATGACAGTGCCTACATGAAGAT 59.837 41.667 0.0 0.0 0.00 2.40 R
3643 7470 1.167781 GGGTACAACCACCACCAACG 61.168 60.000 0.0 0.0 41.02 4.10 R
4998 8855 1.838913 ATGCACAAACGAACAACTGC 58.161 45.000 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 147 3.304293 GCAAATCATTGGTTTTAGCTCGC 59.696 43.478 0.00 0.00 37.02 5.03
162 172 3.123116 GCTCGCTAAGCTTAACGAGTTTT 59.877 43.478 38.91 6.78 45.85 2.43
163 173 4.721505 GCTCGCTAAGCTTAACGAGTTTTC 60.722 45.833 38.91 27.22 45.85 2.29
164 174 4.300803 TCGCTAAGCTTAACGAGTTTTCA 58.699 39.130 24.08 4.49 30.83 2.69
246 298 6.129179 CCCATAGGAGTTCAATGTATGGTTT 58.871 40.000 6.06 0.00 38.92 3.27
253 305 6.239176 GGAGTTCAATGTATGGTTTGTTCCAA 60.239 38.462 0.00 0.00 41.09 3.53
263 315 8.696374 TGTATGGTTTGTTCCAAAATCTAACAA 58.304 29.630 0.00 0.00 41.09 2.83
264 316 9.705290 GTATGGTTTGTTCCAAAATCTAACAAT 57.295 29.630 0.00 0.00 41.34 2.71
289 341 6.521151 AATTTTGTGGCCAAATTGTTGAAA 57.479 29.167 7.24 0.00 40.14 2.69
304 356 6.616774 TTGTTGAAAAATTTGGATTCCTGC 57.383 33.333 3.95 0.00 0.00 4.85
319 371 3.838244 TCCTGCTAGATATTTGCGGTT 57.162 42.857 0.00 0.00 32.80 4.44
374 427 3.315191 GCTCACCAACTTAACAAGCTTCA 59.685 43.478 0.00 0.00 0.00 3.02
376 429 3.882888 TCACCAACTTAACAAGCTTCAGG 59.117 43.478 0.00 0.00 0.00 3.86
397 450 1.939934 CGACTGTGAGCAAGGTTTTCA 59.060 47.619 0.00 0.00 0.00 2.69
421 474 7.934665 TCACTTGTTAAGCTTACCAAACATAGA 59.065 33.333 16.11 10.15 32.31 1.98
447 500 3.549471 CACGAGCTTAATGTGCTGAGTAG 59.451 47.826 0.00 0.00 41.30 2.57
448 501 3.119291 CGAGCTTAATGTGCTGAGTAGG 58.881 50.000 0.00 0.00 41.30 3.18
449 502 3.181486 CGAGCTTAATGTGCTGAGTAGGA 60.181 47.826 0.00 0.00 41.30 2.94
450 503 4.367450 GAGCTTAATGTGCTGAGTAGGAG 58.633 47.826 0.00 0.00 41.30 3.69
451 504 3.133721 AGCTTAATGTGCTGAGTAGGAGG 59.866 47.826 0.00 0.00 39.56 4.30
452 505 3.742640 GCTTAATGTGCTGAGTAGGAGGG 60.743 52.174 0.00 0.00 0.00 4.30
453 506 2.254152 AATGTGCTGAGTAGGAGGGA 57.746 50.000 0.00 0.00 0.00 4.20
454 507 2.485966 ATGTGCTGAGTAGGAGGGAT 57.514 50.000 0.00 0.00 0.00 3.85
455 508 2.254152 TGTGCTGAGTAGGAGGGATT 57.746 50.000 0.00 0.00 0.00 3.01
457 510 2.912956 TGTGCTGAGTAGGAGGGATTTT 59.087 45.455 0.00 0.00 0.00 1.82
458 511 3.274288 GTGCTGAGTAGGAGGGATTTTG 58.726 50.000 0.00 0.00 0.00 2.44
459 512 2.293170 GCTGAGTAGGAGGGATTTTGC 58.707 52.381 0.00 0.00 0.00 3.68
460 513 2.092699 GCTGAGTAGGAGGGATTTTGCT 60.093 50.000 0.00 0.00 0.00 3.91
471 632 3.575687 AGGGATTTTGCTTGTTGAGAAGG 59.424 43.478 0.00 0.00 0.00 3.46
479 640 5.801531 TGCTTGTTGAGAAGGTAGTCTTA 57.198 39.130 0.00 0.00 35.50 2.10
481 642 6.166279 TGCTTGTTGAGAAGGTAGTCTTATG 58.834 40.000 0.00 0.00 35.50 1.90
493 654 6.146760 AGGTAGTCTTATGTTGATCATCCCT 58.853 40.000 0.00 0.00 37.91 4.20
504 665 5.163374 TGTTGATCATCCCTGTCATCTAGTG 60.163 44.000 0.00 0.00 0.00 2.74
510 671 3.556999 TCCCTGTCATCTAGTGTAGAGC 58.443 50.000 0.00 0.00 38.38 4.09
576 737 5.478679 AGATGACATCTAGGATAAGGAACGG 59.521 44.000 16.51 0.00 38.00 4.44
580 741 6.155565 TGACATCTAGGATAAGGAACGGAAAA 59.844 38.462 0.00 0.00 0.00 2.29
587 760 7.297936 AGGATAAGGAACGGAAAATTTGTTT 57.702 32.000 0.00 0.00 0.00 2.83
613 786 5.371115 GAGATCATCTCTTAGTTCCCTCG 57.629 47.826 7.48 0.00 40.30 4.63
614 787 4.798882 AGATCATCTCTTAGTTCCCTCGT 58.201 43.478 0.00 0.00 0.00 4.18
615 788 5.205056 AGATCATCTCTTAGTTCCCTCGTT 58.795 41.667 0.00 0.00 0.00 3.85
616 789 4.985538 TCATCTCTTAGTTCCCTCGTTC 57.014 45.455 0.00 0.00 0.00 3.95
617 790 3.700038 TCATCTCTTAGTTCCCTCGTTCC 59.300 47.826 0.00 0.00 0.00 3.62
630 848 1.689233 CGTTCCCTCCCTCCATCCA 60.689 63.158 0.00 0.00 0.00 3.41
631 849 1.056700 CGTTCCCTCCCTCCATCCAT 61.057 60.000 0.00 0.00 0.00 3.41
632 850 0.767998 GTTCCCTCCCTCCATCCATC 59.232 60.000 0.00 0.00 0.00 3.51
633 851 0.401979 TTCCCTCCCTCCATCCATCC 60.402 60.000 0.00 0.00 0.00 3.51
636 854 0.990374 CCTCCCTCCATCCATCCATC 59.010 60.000 0.00 0.00 0.00 3.51
637 855 0.990374 CTCCCTCCATCCATCCATCC 59.010 60.000 0.00 0.00 0.00 3.51
676 975 6.780706 TCATCACTAAAACGAAAGAAGACC 57.219 37.500 0.00 0.00 0.00 3.85
677 976 6.285224 TCATCACTAAAACGAAAGAAGACCA 58.715 36.000 0.00 0.00 0.00 4.02
679 978 7.444183 TCATCACTAAAACGAAAGAAGACCAAT 59.556 33.333 0.00 0.00 0.00 3.16
690 989 7.161404 CGAAAGAAGACCAATATATCATCCCA 58.839 38.462 0.00 0.00 0.00 4.37
693 992 8.874744 AAGAAGACCAATATATCATCCCATTG 57.125 34.615 0.00 0.00 0.00 2.82
696 995 9.911788 GAAGACCAATATATCATCCCATTGTAT 57.088 33.333 0.00 0.00 0.00 2.29
704 1003 3.544684 TCATCCCATTGTATGTGCACTC 58.455 45.455 19.41 9.15 0.00 3.51
738 1037 3.095163 ATGCTCCAGAGGGCCCAG 61.095 66.667 27.56 13.74 0.00 4.45
771 1070 7.126421 TCAGCCTTTACCTATTTCTCTCTCAAT 59.874 37.037 0.00 0.00 0.00 2.57
794 1093 2.982744 GCCTCCTTTGCTCCGTTGC 61.983 63.158 0.00 0.00 0.00 4.17
886 1188 1.338200 GGTGGAGCACAAGACGAGATT 60.338 52.381 0.00 0.00 35.86 2.40
887 1189 1.728971 GTGGAGCACAAGACGAGATTG 59.271 52.381 0.00 0.00 34.08 2.67
915 1217 3.833070 ACCAGGTATAGATCAATCCGACC 59.167 47.826 0.00 0.00 0.00 4.79
924 1226 1.141881 CAATCCGACCACTCCCTCG 59.858 63.158 0.00 0.00 0.00 4.63
960 1262 5.124297 TGCTATTGTGATGTTCACCATTCTG 59.876 40.000 5.27 0.00 46.40 3.02
970 1272 8.805175 TGATGTTCACCATTCTGACATAAATTT 58.195 29.630 0.00 0.00 32.56 1.82
1066 1368 0.824182 CGCTCCTACCGGATTCTCCT 60.824 60.000 9.46 0.00 39.01 3.69
1073 1375 1.490574 ACCGGATTCTCCTCCAAGAG 58.509 55.000 9.46 0.00 34.78 2.85
1155 1457 6.151817 GGAGAAGGTGCAATTTCAGAGTAAAT 59.848 38.462 12.42 0.00 0.00 1.40
1190 1492 5.393866 ACTGTATTTCAACAAGGATGGGTT 58.606 37.500 0.00 0.00 0.00 4.11
1209 1511 0.179702 TGGCTATGAGGAAGCTGCAG 59.820 55.000 10.11 10.11 39.97 4.41
1236 1538 5.661458 AGTTGTACAATCTAATCACCCTCG 58.339 41.667 12.26 0.00 0.00 4.63
1294 1596 6.707440 TCTGTCTTTTTGGTTTTAGATGCA 57.293 33.333 0.00 0.00 0.00 3.96
1340 1646 7.172875 CCTTATCAGAATGGAGTGAATAAGCTG 59.827 40.741 0.00 0.00 36.16 4.24
1396 1702 3.399330 GACGGAATGTTGTCCTTGAGAA 58.601 45.455 0.00 0.00 35.31 2.87
1397 1703 4.003648 GACGGAATGTTGTCCTTGAGAAT 58.996 43.478 0.00 0.00 35.31 2.40
1442 1748 2.218953 ATGATGGTGTTACGGTAGCG 57.781 50.000 13.69 13.69 0.00 4.26
1490 1796 9.502091 GTTTACTCATACCATGCAATCCTAATA 57.498 33.333 0.00 0.00 0.00 0.98
1560 1872 1.544691 GTTGAGCTCGAAGACCCTGTA 59.455 52.381 4.86 0.00 0.00 2.74
1626 1938 0.682209 ATGACTTGGCTGGTGATGGC 60.682 55.000 0.00 0.00 0.00 4.40
1694 2006 6.365050 GTGTTAAGGTACACCAATACAAACG 58.635 40.000 0.38 0.00 41.99 3.60
1762 2080 9.103048 CGATTCGGTAAATAATGTTAGATTTGC 57.897 33.333 0.00 0.00 0.00 3.68
1856 2174 3.221771 AGCACTAGTCTATGAGCTCCAG 58.778 50.000 12.15 8.68 0.00 3.86
1889 2207 7.311929 TCCAAGGAGGTTTAGATTTGCTAATCT 60.312 37.037 23.60 23.60 44.41 2.40
1903 2224 7.994425 TTTGCTAATCTATTGTTCAGTTCCA 57.006 32.000 0.00 0.00 0.00 3.53
1968 2299 6.330278 TCAATCTATGATAAATACTCGGCCG 58.670 40.000 22.12 22.12 31.50 6.13
2032 2367 7.084268 ACTTCTGCTCCCTATGCTAATTATT 57.916 36.000 0.00 0.00 0.00 1.40
2451 3232 6.237901 AGTATAACAATTGCAAGGTCTGTCA 58.762 36.000 4.94 0.00 0.00 3.58
2511 3297 6.239217 AGCACAATCTCCATGAGTTATGTA 57.761 37.500 0.00 0.00 34.87 2.29
2512 3298 6.653020 AGCACAATCTCCATGAGTTATGTAA 58.347 36.000 0.00 0.00 34.87 2.41
2885 4557 5.185056 TGTCATCAGAGACGAATTTGGAGTA 59.815 40.000 0.00 0.00 41.41 2.59
2945 4617 5.770663 TGCTGCCAAGGTTGTAATTACTAAA 59.229 36.000 16.33 0.97 0.00 1.85
3030 4702 4.916041 ATCAAGAACCAGATTGAGGTCA 57.084 40.909 0.00 0.00 38.76 4.02
3050 6369 9.817809 GAGGTCAGTATATTGTGAACTTATTGA 57.182 33.333 6.13 0.00 40.94 2.57
3340 6680 5.534654 AGTGCACTTTTTAGGTTGCATTAGA 59.465 36.000 15.25 0.00 34.72 2.10
3489 6830 8.714906 TCCTGGTTAAATTCCAATTGGTTTTTA 58.285 29.630 23.76 21.92 34.35 1.52
3556 7378 9.844790 TGCATTCTAGAATTGTGTTGATTTTAG 57.155 29.630 15.49 0.80 0.00 1.85
3643 7470 3.010420 GGCTGTTGAGGAAGGTATTGTC 58.990 50.000 0.00 0.00 0.00 3.18
3665 7492 0.694783 TGGTGGTGGTTGTACCCTCA 60.695 55.000 0.00 0.00 40.09 3.86
3670 7497 3.262405 GTGGTGGTTGTACCCTCATAAGA 59.738 47.826 0.00 0.00 40.09 2.10
3756 7585 2.879026 GTTAATGGGATCCTCTTTCGCC 59.121 50.000 12.58 0.00 0.00 5.54
3765 7594 1.160137 CCTCTTTCGCCAGGTTTCAG 58.840 55.000 0.00 0.00 0.00 3.02
3848 7679 5.001232 CCTCTTCGTATTTTCAAGGTTGGA 58.999 41.667 0.00 0.00 0.00 3.53
4155 7995 3.972403 TGACCACGTCATATAACCGATG 58.028 45.455 0.00 0.00 37.67 3.84
4456 8309 8.950210 TCAAACAAAAATTAACTGGATTTTGCA 58.050 25.926 9.11 0.00 43.22 4.08
4457 8310 9.733219 CAAACAAAAATTAACTGGATTTTGCAT 57.267 25.926 9.11 0.00 43.22 3.96
4651 8504 8.772250 TCTTACTCAGGAATCAATATGGTCTTT 58.228 33.333 0.00 0.00 0.00 2.52
4703 8556 9.628500 GGTTATGGATTCTAATTTAGGACAAGT 57.372 33.333 3.66 0.00 0.00 3.16
4820 8676 5.414454 AGTCAAAGCCGCAATCAATAGTTTA 59.586 36.000 0.00 0.00 0.00 2.01
4949 8806 6.453926 TTGTGGTAATGATGATGTTCCATG 57.546 37.500 0.00 0.00 0.00 3.66
4998 8855 4.334443 CATGAAAGGTTTCGCAATACTCG 58.666 43.478 0.00 0.00 40.01 4.18
5008 8865 1.524986 CGCAATACTCGCAGTTGTTCG 60.525 52.381 0.00 0.00 0.00 3.95
5038 8901 5.334569 GCATTTGTTCCTTAACTGAGCGTAA 60.335 40.000 0.00 0.00 36.51 3.18
5185 9048 9.403110 GTGATTAAAGTCAATGATGATATTGGC 57.597 33.333 0.00 0.00 41.70 4.52
5187 9050 5.443185 AAAGTCAATGATGATATTGGCCG 57.557 39.130 0.00 0.00 42.21 6.13
5326 9189 5.754543 ACTTAGTAGACTTACGCATCTCC 57.245 43.478 0.00 0.00 34.88 3.71
5383 9246 7.064609 TCGATGACACTTTTCTATTCATGGAAC 59.935 37.037 0.00 0.00 31.11 3.62
5527 9390 9.274206 GGTTGAGGACAAATATAAGGAGTTATC 57.726 37.037 0.00 0.00 37.77 1.75
5577 9440 2.566724 CGTTACCTTGGTACCCCTGTTA 59.433 50.000 10.07 0.00 0.00 2.41
5589 9459 5.955959 GGTACCCCTGTTAATTTCTGGAAAT 59.044 40.000 0.00 3.06 42.35 2.17
5606 9476 7.611770 TCTGGAAATTCTCGAATAAGAAGTGA 58.388 34.615 0.00 0.00 38.60 3.41
5607 9477 8.094548 TCTGGAAATTCTCGAATAAGAAGTGAA 58.905 33.333 0.00 0.00 38.60 3.18
5631 9501 7.765695 AAAAAGGATAGAAGACATCAAAGCA 57.234 32.000 0.00 0.00 0.00 3.91
5632 9502 6.998968 AAAGGATAGAAGACATCAAAGCAG 57.001 37.500 0.00 0.00 0.00 4.24
5633 9503 5.690464 AGGATAGAAGACATCAAAGCAGT 57.310 39.130 0.00 0.00 0.00 4.40
5634 9504 5.426504 AGGATAGAAGACATCAAAGCAGTG 58.573 41.667 0.00 0.00 0.00 3.66
5635 9505 4.034975 GGATAGAAGACATCAAAGCAGTGC 59.965 45.833 7.13 7.13 0.00 4.40
5636 9506 3.137446 AGAAGACATCAAAGCAGTGCT 57.863 42.857 13.14 13.14 42.56 4.40
5637 9507 3.072944 AGAAGACATCAAAGCAGTGCTC 58.927 45.455 20.03 3.93 38.25 4.26
5638 9508 2.556144 AGACATCAAAGCAGTGCTCA 57.444 45.000 20.03 5.93 38.25 4.26
5639 9509 2.149578 AGACATCAAAGCAGTGCTCAC 58.850 47.619 20.03 5.21 38.25 3.51
5640 9510 1.198637 GACATCAAAGCAGTGCTCACC 59.801 52.381 20.03 0.16 38.25 4.02
5641 9511 1.241165 CATCAAAGCAGTGCTCACCA 58.759 50.000 20.03 3.16 38.25 4.17
5642 9512 1.199327 CATCAAAGCAGTGCTCACCAG 59.801 52.381 20.03 6.97 38.25 4.00
5644 9514 1.900498 AAAGCAGTGCTCACCAGCC 60.900 57.895 20.03 0.00 46.26 4.85
5645 9515 2.349100 AAAGCAGTGCTCACCAGCCT 62.349 55.000 20.03 0.00 46.26 4.58
5646 9516 1.483595 AAGCAGTGCTCACCAGCCTA 61.484 55.000 20.03 0.00 46.26 3.93
5647 9517 1.743252 GCAGTGCTCACCAGCCTAC 60.743 63.158 8.18 0.00 46.26 3.18
5648 9518 1.078848 CAGTGCTCACCAGCCTACC 60.079 63.158 0.00 0.00 46.26 3.18
5649 9519 1.536418 AGTGCTCACCAGCCTACCA 60.536 57.895 0.00 0.00 46.26 3.25
5650 9520 1.127567 AGTGCTCACCAGCCTACCAA 61.128 55.000 0.00 0.00 46.26 3.67
5651 9521 0.035056 GTGCTCACCAGCCTACCAAT 60.035 55.000 0.00 0.00 46.26 3.16
5652 9522 0.035152 TGCTCACCAGCCTACCAATG 60.035 55.000 0.00 0.00 46.26 2.82
5653 9523 0.035056 GCTCACCAGCCTACCAATGT 60.035 55.000 0.00 0.00 40.14 2.71
5654 9524 1.614317 GCTCACCAGCCTACCAATGTT 60.614 52.381 0.00 0.00 40.14 2.71
5655 9525 2.795329 CTCACCAGCCTACCAATGTTT 58.205 47.619 0.00 0.00 0.00 2.83
5656 9526 3.157087 CTCACCAGCCTACCAATGTTTT 58.843 45.455 0.00 0.00 0.00 2.43
5657 9527 2.890311 TCACCAGCCTACCAATGTTTTG 59.110 45.455 0.00 0.00 0.00 2.44
5658 9528 2.627699 CACCAGCCTACCAATGTTTTGT 59.372 45.455 0.00 0.00 0.00 2.83
5659 9529 2.890945 ACCAGCCTACCAATGTTTTGTC 59.109 45.455 0.00 0.00 0.00 3.18
5660 9530 2.231235 CCAGCCTACCAATGTTTTGTCC 59.769 50.000 0.00 0.00 0.00 4.02
5661 9531 3.157087 CAGCCTACCAATGTTTTGTCCT 58.843 45.455 0.00 0.00 0.00 3.85
5662 9532 3.573967 CAGCCTACCAATGTTTTGTCCTT 59.426 43.478 0.00 0.00 0.00 3.36
5663 9533 4.039124 CAGCCTACCAATGTTTTGTCCTTT 59.961 41.667 0.00 0.00 0.00 3.11
5664 9534 4.039124 AGCCTACCAATGTTTTGTCCTTTG 59.961 41.667 0.00 0.00 0.00 2.77
5665 9535 4.038642 GCCTACCAATGTTTTGTCCTTTGA 59.961 41.667 0.00 0.00 0.00 2.69
5666 9536 5.452636 GCCTACCAATGTTTTGTCCTTTGAA 60.453 40.000 0.00 0.00 0.00 2.69
5667 9537 6.578023 CCTACCAATGTTTTGTCCTTTGAAA 58.422 36.000 0.00 0.00 0.00 2.69
5668 9538 7.216494 CCTACCAATGTTTTGTCCTTTGAAAT 58.784 34.615 0.00 0.00 0.00 2.17
5669 9539 8.364142 CCTACCAATGTTTTGTCCTTTGAAATA 58.636 33.333 0.00 0.00 0.00 1.40
5670 9540 9.191995 CTACCAATGTTTTGTCCTTTGAAATAC 57.808 33.333 0.00 0.00 0.00 1.89
5671 9541 6.989759 ACCAATGTTTTGTCCTTTGAAATACC 59.010 34.615 0.00 0.00 0.00 2.73
5672 9542 7.147567 ACCAATGTTTTGTCCTTTGAAATACCT 60.148 33.333 0.00 0.00 0.00 3.08
5673 9543 8.364142 CCAATGTTTTGTCCTTTGAAATACCTA 58.636 33.333 0.00 0.00 0.00 3.08
5674 9544 9.757227 CAATGTTTTGTCCTTTGAAATACCTAA 57.243 29.630 0.00 0.00 0.00 2.69
5676 9546 9.927668 ATGTTTTGTCCTTTGAAATACCTAATG 57.072 29.630 0.00 0.00 0.00 1.90
5677 9547 8.364142 TGTTTTGTCCTTTGAAATACCTAATGG 58.636 33.333 0.00 0.00 39.83 3.16
5678 9548 7.475137 TTTGTCCTTTGAAATACCTAATGGG 57.525 36.000 0.00 0.00 41.89 4.00
5679 9549 5.515106 TGTCCTTTGAAATACCTAATGGGG 58.485 41.667 0.00 0.00 40.03 4.96
5680 9550 5.015817 TGTCCTTTGAAATACCTAATGGGGT 59.984 40.000 0.00 0.00 42.86 4.95
5681 9551 5.359860 GTCCTTTGAAATACCTAATGGGGTG 59.640 44.000 0.00 0.00 40.22 4.61
5682 9552 5.254267 TCCTTTGAAATACCTAATGGGGTGA 59.746 40.000 0.00 0.00 40.22 4.02
5683 9553 5.955355 CCTTTGAAATACCTAATGGGGTGAA 59.045 40.000 0.00 0.00 40.22 3.18
5684 9554 6.127451 CCTTTGAAATACCTAATGGGGTGAAC 60.127 42.308 0.00 0.00 40.22 3.18
5685 9555 5.522315 TGAAATACCTAATGGGGTGAACA 57.478 39.130 0.00 0.00 40.22 3.18
5686 9556 5.505780 TGAAATACCTAATGGGGTGAACAG 58.494 41.667 0.00 0.00 40.22 3.16
5687 9557 5.251932 TGAAATACCTAATGGGGTGAACAGA 59.748 40.000 0.00 0.00 40.22 3.41
5688 9558 5.994416 AATACCTAATGGGGTGAACAGAT 57.006 39.130 0.00 0.00 40.22 2.90
5689 9559 5.994416 ATACCTAATGGGGTGAACAGATT 57.006 39.130 0.00 0.00 40.22 2.40
5690 9560 4.236527 ACCTAATGGGGTGAACAGATTC 57.763 45.455 0.00 0.00 38.30 2.52
5691 9561 3.206150 CCTAATGGGGTGAACAGATTCG 58.794 50.000 0.00 0.00 37.69 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 147 6.427150 TGCTTTGAAAACTCGTTAAGCTTAG 58.573 36.000 6.24 0.00 38.91 2.18
162 172 4.826733 AGAATATGTGGTGTGTTGCTTTGA 59.173 37.500 0.00 0.00 0.00 2.69
163 173 5.125100 AGAATATGTGGTGTGTTGCTTTG 57.875 39.130 0.00 0.00 0.00 2.77
164 174 5.789643 AAGAATATGTGGTGTGTTGCTTT 57.210 34.783 0.00 0.00 0.00 3.51
253 305 9.566432 TTGGCCACAAAATTAATTGTTAGATTT 57.434 25.926 3.88 0.00 41.44 2.17
289 341 8.146412 GCAAATATCTAGCAGGAATCCAAATTT 58.854 33.333 0.61 0.00 0.00 1.82
304 356 3.609103 GGCACAACCGCAAATATCTAG 57.391 47.619 0.00 0.00 0.00 2.43
356 409 2.623416 GCCTGAAGCTTGTTAAGTTGGT 59.377 45.455 2.10 0.00 38.99 3.67
360 413 2.143925 GTCGCCTGAAGCTTGTTAAGT 58.856 47.619 2.10 0.00 40.39 2.24
374 427 2.044806 AACCTTGCTCACAGTCGCCT 62.045 55.000 0.00 0.00 0.00 5.52
376 429 0.663153 AAAACCTTGCTCACAGTCGC 59.337 50.000 0.00 0.00 0.00 5.19
383 436 5.678616 GCTTAACAAGTGAAAACCTTGCTCA 60.679 40.000 0.00 0.00 42.41 4.26
389 442 5.889289 TGGTAAGCTTAACAAGTGAAAACCT 59.111 36.000 21.84 0.00 0.00 3.50
397 450 8.154856 TCTCTATGTTTGGTAAGCTTAACAAGT 58.845 33.333 30.14 23.06 40.99 3.16
438 491 2.356125 GCAAAATCCCTCCTACTCAGCA 60.356 50.000 0.00 0.00 0.00 4.41
447 500 3.157087 TCTCAACAAGCAAAATCCCTCC 58.843 45.455 0.00 0.00 0.00 4.30
448 501 4.321527 CCTTCTCAACAAGCAAAATCCCTC 60.322 45.833 0.00 0.00 0.00 4.30
449 502 3.575687 CCTTCTCAACAAGCAAAATCCCT 59.424 43.478 0.00 0.00 0.00 4.20
450 503 3.321968 ACCTTCTCAACAAGCAAAATCCC 59.678 43.478 0.00 0.00 0.00 3.85
451 504 4.590850 ACCTTCTCAACAAGCAAAATCC 57.409 40.909 0.00 0.00 0.00 3.01
452 505 6.205658 AGACTACCTTCTCAACAAGCAAAATC 59.794 38.462 0.00 0.00 0.00 2.17
453 506 6.064717 AGACTACCTTCTCAACAAGCAAAAT 58.935 36.000 0.00 0.00 0.00 1.82
454 507 5.437060 AGACTACCTTCTCAACAAGCAAAA 58.563 37.500 0.00 0.00 0.00 2.44
455 508 5.036117 AGACTACCTTCTCAACAAGCAAA 57.964 39.130 0.00 0.00 0.00 3.68
457 510 4.689612 AAGACTACCTTCTCAACAAGCA 57.310 40.909 0.00 0.00 0.00 3.91
458 511 6.166982 ACATAAGACTACCTTCTCAACAAGC 58.833 40.000 0.00 0.00 36.34 4.01
459 512 7.872993 TCAACATAAGACTACCTTCTCAACAAG 59.127 37.037 0.00 0.00 36.34 3.16
460 513 7.732025 TCAACATAAGACTACCTTCTCAACAA 58.268 34.615 0.00 0.00 36.34 2.83
471 632 6.821388 ACAGGGATGATCAACATAAGACTAC 58.179 40.000 0.00 0.00 39.56 2.73
479 640 5.605908 ACTAGATGACAGGGATGATCAACAT 59.394 40.000 0.00 0.00 42.47 2.71
481 642 5.163364 ACACTAGATGACAGGGATGATCAAC 60.163 44.000 0.00 0.00 0.00 3.18
493 654 6.590234 TTTTCAGCTCTACACTAGATGACA 57.410 37.500 0.00 0.00 38.98 3.58
561 722 7.625828 ACAAATTTTCCGTTCCTTATCCTAG 57.374 36.000 0.00 0.00 0.00 3.02
608 781 2.764547 GGAGGGAGGGAACGAGGG 60.765 72.222 0.00 0.00 0.00 4.30
609 782 1.383248 ATGGAGGGAGGGAACGAGG 60.383 63.158 0.00 0.00 0.00 4.63
610 783 1.403687 GGATGGAGGGAGGGAACGAG 61.404 65.000 0.00 0.00 0.00 4.18
611 784 1.382695 GGATGGAGGGAGGGAACGA 60.383 63.158 0.00 0.00 0.00 3.85
612 785 1.056700 ATGGATGGAGGGAGGGAACG 61.057 60.000 0.00 0.00 0.00 3.95
613 786 0.767998 GATGGATGGAGGGAGGGAAC 59.232 60.000 0.00 0.00 0.00 3.62
614 787 0.401979 GGATGGATGGAGGGAGGGAA 60.402 60.000 0.00 0.00 0.00 3.97
615 788 1.240129 GGATGGATGGAGGGAGGGA 59.760 63.158 0.00 0.00 0.00 4.20
616 789 0.477202 ATGGATGGATGGAGGGAGGG 60.477 60.000 0.00 0.00 0.00 4.30
617 790 0.990374 GATGGATGGATGGAGGGAGG 59.010 60.000 0.00 0.00 0.00 4.30
630 848 2.501723 GCCACGTATAGGATGGATGGAT 59.498 50.000 14.37 0.00 35.33 3.41
631 849 1.899814 GCCACGTATAGGATGGATGGA 59.100 52.381 14.37 0.00 35.33 3.41
632 850 1.623311 TGCCACGTATAGGATGGATGG 59.377 52.381 14.37 6.49 35.33 3.51
633 851 3.055891 TGATGCCACGTATAGGATGGATG 60.056 47.826 14.37 0.00 35.33 3.51
636 854 3.055891 TGATGATGCCACGTATAGGATGG 60.056 47.826 0.00 4.83 36.51 3.51
637 855 3.928992 GTGATGATGCCACGTATAGGATG 59.071 47.826 0.00 0.00 0.00 3.51
676 975 8.186163 GTGCACATACAATGGGATGATATATTG 58.814 37.037 13.17 0.00 35.01 1.90
677 976 8.111545 AGTGCACATACAATGGGATGATATATT 58.888 33.333 21.04 0.00 35.01 1.28
679 978 7.019656 AGTGCACATACAATGGGATGATATA 57.980 36.000 21.04 0.00 35.01 0.86
690 989 6.540189 GTCTTCATTAGGAGTGCACATACAAT 59.460 38.462 21.04 9.99 0.00 2.71
693 992 5.665459 AGTCTTCATTAGGAGTGCACATAC 58.335 41.667 21.04 8.50 0.00 2.39
696 995 3.055819 GGAGTCTTCATTAGGAGTGCACA 60.056 47.826 21.04 0.00 0.00 4.57
704 1003 4.125703 GAGCATGTGGAGTCTTCATTAGG 58.874 47.826 0.00 0.00 0.00 2.69
771 1070 0.606401 CGGAGCAAAGGAGGCAAAGA 60.606 55.000 0.00 0.00 0.00 2.52
794 1093 7.847711 TCATCCTTCTCCTCTCTTAAATAGG 57.152 40.000 0.00 0.00 0.00 2.57
886 1188 6.497259 GGATTGATCTATACCTGGTTACTCCA 59.503 42.308 3.84 0.00 45.01 3.86
887 1189 6.350277 CGGATTGATCTATACCTGGTTACTCC 60.350 46.154 3.84 0.00 0.00 3.85
902 1204 1.123928 GGGAGTGGTCGGATTGATCT 58.876 55.000 0.00 0.00 0.00 2.75
907 1209 0.903454 AACGAGGGAGTGGTCGGATT 60.903 55.000 0.00 0.00 40.59 3.01
915 1217 1.324005 GGAGAGGGAACGAGGGAGTG 61.324 65.000 0.00 0.00 0.00 3.51
924 1226 1.840635 ACAATAGCAGGGAGAGGGAAC 59.159 52.381 0.00 0.00 0.00 3.62
982 1284 6.931790 AGCCATAATCTCTATCACTGTCAT 57.068 37.500 0.00 0.00 0.00 3.06
1066 1368 0.836400 AGGGAAAGCGTCCTCTTGGA 60.836 55.000 9.09 0.00 46.92 3.53
1075 1377 2.258726 GCGAAACCAGGGAAAGCGT 61.259 57.895 0.00 0.00 0.00 5.07
1155 1457 1.904287 AATACAGTTCCTTTGCGGCA 58.096 45.000 0.00 0.00 0.00 5.69
1190 1492 0.179702 CTGCAGCTTCCTCATAGCCA 59.820 55.000 0.00 0.00 39.47 4.75
1209 1511 5.585047 GGGTGATTAGATTGTACAACTCACC 59.415 44.000 27.56 27.56 46.79 4.02
1316 1618 6.994496 CCAGCTTATTCACTCCATTCTGATAA 59.006 38.462 0.00 0.00 0.00 1.75
1340 1646 1.611977 GTAACTCCAACCAGGTTTGCC 59.388 52.381 0.44 0.00 39.02 4.52
1396 1702 2.761786 TCTAGGTGGCCCGTACTTAT 57.238 50.000 0.00 0.00 35.12 1.73
1397 1703 2.530460 TTCTAGGTGGCCCGTACTTA 57.470 50.000 0.00 0.00 35.12 2.24
1442 1748 3.855950 CCGTAATGACACGTACCTCTTTC 59.144 47.826 0.00 0.00 40.31 2.62
1469 1775 9.896645 ACTTATATTAGGATTGCATGGTATGAG 57.103 33.333 0.00 0.00 0.00 2.90
1490 1796 6.349300 AGTTCATAGCACGGATTCAACTTAT 58.651 36.000 0.00 0.00 0.00 1.73
1693 2005 6.145534 TGCTATAAAAGACAAGACACAAGACG 59.854 38.462 0.00 0.00 0.00 4.18
1694 2006 7.421530 TGCTATAAAAGACAAGACACAAGAC 57.578 36.000 0.00 0.00 0.00 3.01
1762 2080 5.582665 GCACCTACAATCTGGAGAAAGTAAG 59.417 44.000 0.00 0.00 26.39 2.34
1856 2174 5.422214 TCTAAACCTCCTTGGACATCTTC 57.578 43.478 0.00 0.00 39.71 2.87
1889 2207 9.513906 TGAATGTATTTCTGGAACTGAACAATA 57.486 29.630 0.00 0.00 45.61 1.90
1947 2268 6.547880 AGATCGGCCGAGTATTTATCATAGAT 59.452 38.462 33.87 10.48 0.00 1.98
1948 2269 5.886474 AGATCGGCCGAGTATTTATCATAGA 59.114 40.000 33.87 3.95 0.00 1.98
1965 2296 3.485947 TTGTTGCATTACAAGATCGGC 57.514 42.857 0.00 0.00 39.50 5.54
1997 2328 6.673839 AGGGAGCAGAAGTTACTATAATCC 57.326 41.667 0.00 0.00 0.00 3.01
2032 2367 1.476891 GGTGAGTCATCTGCTCCGTTA 59.523 52.381 0.00 0.00 32.31 3.18
2146 2927 8.065502 TTGAATTTCAAATAGAGGGTACTCCCG 61.066 40.741 9.36 0.00 45.04 5.14
2278 3059 2.620112 CCCAACCTTGCTCACAGCG 61.620 63.158 0.00 0.00 46.26 5.18
2451 3232 1.603802 CGAACTGCCAAGACAATGTGT 59.396 47.619 0.00 0.00 0.00 3.72
2661 4280 4.711949 AGCACGAGGGCTGCAAGG 62.712 66.667 0.00 0.00 43.89 3.61
2845 4517 4.162888 TGATGACAGTGCCTACATGAAGAT 59.837 41.667 0.00 0.00 0.00 2.40
2945 4617 8.472413 CCATCTCCAATTATTGTTGTTGAATCT 58.528 33.333 4.15 0.00 0.00 2.40
3356 6697 8.732746 ACCTACAAACCAAGATGTATTATGTC 57.267 34.615 0.00 0.00 32.02 3.06
3489 6830 9.125026 GAATGATATCAAAGGTACACAAATCCT 57.875 33.333 9.99 0.00 0.00 3.24
3643 7470 1.167781 GGGTACAACCACCACCAACG 61.168 60.000 0.00 0.00 41.02 4.10
3848 7679 3.073650 AGGACTTCCTCACAATTTCAGCT 59.926 43.478 0.00 0.00 44.77 4.24
4155 7995 4.161942 ACCATAGCATCCTCATATGAGAGC 59.838 45.833 30.40 27.13 44.74 4.09
4402 8255 2.305635 TGCTTATGCACAGAAAGGAGGA 59.694 45.455 0.00 0.00 45.31 3.71
4456 8309 3.486383 CAACACCTCACCACCTGTTTAT 58.514 45.455 0.00 0.00 0.00 1.40
4457 8310 2.925724 CAACACCTCACCACCTGTTTA 58.074 47.619 0.00 0.00 0.00 2.01
4790 8646 3.127533 GCGGCTTTGACTCGCCAT 61.128 61.111 0.00 0.00 46.62 4.40
4848 8704 6.483307 TGTAGCTACAATATTCCATGCAACTC 59.517 38.462 24.15 0.00 32.40 3.01
4895 8752 3.751175 TCAGTTAAGGAACAAATGCTCGG 59.249 43.478 0.00 0.00 38.10 4.63
4949 8806 8.851416 CGAAGAGTGTATCGAATTAATCCATAC 58.149 37.037 0.00 0.00 41.43 2.39
4958 8815 4.682787 TCATGCGAAGAGTGTATCGAATT 58.317 39.130 0.00 0.00 41.43 2.17
4959 8816 4.307443 TCATGCGAAGAGTGTATCGAAT 57.693 40.909 0.00 0.00 41.43 3.34
4960 8817 3.775661 TCATGCGAAGAGTGTATCGAA 57.224 42.857 0.00 0.00 41.43 3.71
4962 8819 3.243877 CCTTTCATGCGAAGAGTGTATCG 59.756 47.826 9.44 0.00 41.81 2.92
4998 8855 1.838913 ATGCACAAACGAACAACTGC 58.161 45.000 0.00 0.00 0.00 4.40
5008 8865 6.039616 TCAGTTAAGGAACAAATGCACAAAC 58.960 36.000 0.00 0.00 38.10 2.93
5038 8901 5.711506 TGAAACATCATCATTACCACAAGCT 59.288 36.000 0.00 0.00 0.00 3.74
5185 9048 2.743636 TCCTAGTCTGAAAGCAACGG 57.256 50.000 0.00 0.00 0.00 4.44
5187 9050 3.244596 ACCCTTCCTAGTCTGAAAGCAAC 60.245 47.826 0.00 0.00 0.00 4.17
5369 9232 4.163268 TCATGTCGGGTTCCATGAATAGAA 59.837 41.667 0.00 0.00 43.21 2.10
5370 9233 3.709141 TCATGTCGGGTTCCATGAATAGA 59.291 43.478 0.00 0.00 43.21 1.98
5371 9234 4.071961 TCATGTCGGGTTCCATGAATAG 57.928 45.455 0.00 0.00 43.21 1.73
5383 9246 0.449388 GCTGCTTTCTTCATGTCGGG 59.551 55.000 0.00 0.00 0.00 5.14
5393 9256 2.880890 AGTTTCACATTCGCTGCTTTCT 59.119 40.909 0.00 0.00 0.00 2.52
5480 9343 0.036388 CCTTAGCCTGACCGAAGCAA 60.036 55.000 0.00 0.00 0.00 3.91
5527 9390 3.947910 AAAATCATGACTTGCACCCAG 57.052 42.857 0.00 0.00 0.00 4.45
5607 9477 7.449704 ACTGCTTTGATGTCTTCTATCCTTTTT 59.550 33.333 0.00 0.00 0.00 1.94
5623 9493 1.531423 CTGGTGAGCACTGCTTTGAT 58.469 50.000 4.67 0.00 39.88 2.57
5624 9494 1.168407 GCTGGTGAGCACTGCTTTGA 61.168 55.000 4.67 0.00 45.46 2.69
5625 9495 1.285023 GCTGGTGAGCACTGCTTTG 59.715 57.895 4.67 0.00 45.46 2.77
5626 9496 3.755434 GCTGGTGAGCACTGCTTT 58.245 55.556 4.67 0.00 45.46 3.51
5634 9504 0.035056 ACATTGGTAGGCTGGTGAGC 60.035 55.000 0.00 0.00 45.40 4.26
5635 9505 2.496899 AACATTGGTAGGCTGGTGAG 57.503 50.000 0.00 0.00 0.00 3.51
5636 9506 2.890311 CAAAACATTGGTAGGCTGGTGA 59.110 45.455 0.00 0.00 0.00 4.02
5637 9507 2.627699 ACAAAACATTGGTAGGCTGGTG 59.372 45.455 0.00 0.00 0.00 4.17
5638 9508 2.890945 GACAAAACATTGGTAGGCTGGT 59.109 45.455 0.00 0.00 0.00 4.00
5639 9509 2.231235 GGACAAAACATTGGTAGGCTGG 59.769 50.000 0.00 0.00 0.00 4.85
5640 9510 3.157087 AGGACAAAACATTGGTAGGCTG 58.843 45.455 0.00 0.00 0.00 4.85
5641 9511 3.525800 AGGACAAAACATTGGTAGGCT 57.474 42.857 0.00 0.00 0.00 4.58
5642 9512 4.038642 TCAAAGGACAAAACATTGGTAGGC 59.961 41.667 0.00 0.00 0.00 3.93
5643 9513 5.782893 TCAAAGGACAAAACATTGGTAGG 57.217 39.130 0.00 0.00 0.00 3.18
5644 9514 9.191995 GTATTTCAAAGGACAAAACATTGGTAG 57.808 33.333 0.00 0.00 0.00 3.18
5645 9515 8.145122 GGTATTTCAAAGGACAAAACATTGGTA 58.855 33.333 0.00 0.00 0.00 3.25
5646 9516 6.989759 GGTATTTCAAAGGACAAAACATTGGT 59.010 34.615 0.00 0.00 0.00 3.67
5647 9517 7.216494 AGGTATTTCAAAGGACAAAACATTGG 58.784 34.615 0.00 0.00 0.00 3.16
5648 9518 9.757227 TTAGGTATTTCAAAGGACAAAACATTG 57.243 29.630 0.00 0.00 0.00 2.82
5650 9520 9.927668 CATTAGGTATTTCAAAGGACAAAACAT 57.072 29.630 0.00 0.00 0.00 2.71
5651 9521 8.364142 CCATTAGGTATTTCAAAGGACAAAACA 58.636 33.333 0.00 0.00 0.00 2.83
5652 9522 7.817478 CCCATTAGGTATTTCAAAGGACAAAAC 59.183 37.037 0.00 0.00 0.00 2.43
5653 9523 7.038658 CCCCATTAGGTATTTCAAAGGACAAAA 60.039 37.037 0.00 0.00 0.00 2.44
5654 9524 6.439058 CCCCATTAGGTATTTCAAAGGACAAA 59.561 38.462 0.00 0.00 0.00 2.83
5655 9525 5.955355 CCCCATTAGGTATTTCAAAGGACAA 59.045 40.000 0.00 0.00 0.00 3.18
5656 9526 5.015817 ACCCCATTAGGTATTTCAAAGGACA 59.984 40.000 0.00 0.00 38.79 4.02
5657 9527 5.359860 CACCCCATTAGGTATTTCAAAGGAC 59.640 44.000 0.00 0.00 38.39 3.85
5658 9528 5.254267 TCACCCCATTAGGTATTTCAAAGGA 59.746 40.000 0.00 0.00 38.39 3.36
5659 9529 5.515106 TCACCCCATTAGGTATTTCAAAGG 58.485 41.667 0.00 0.00 38.39 3.11
5660 9530 6.435904 TGTTCACCCCATTAGGTATTTCAAAG 59.564 38.462 0.00 0.00 38.39 2.77
5661 9531 6.315714 TGTTCACCCCATTAGGTATTTCAAA 58.684 36.000 0.00 0.00 38.39 2.69
5662 9532 5.893500 TGTTCACCCCATTAGGTATTTCAA 58.106 37.500 0.00 0.00 38.39 2.69
5663 9533 5.251932 TCTGTTCACCCCATTAGGTATTTCA 59.748 40.000 0.00 0.00 38.39 2.69
5664 9534 5.751586 TCTGTTCACCCCATTAGGTATTTC 58.248 41.667 0.00 0.00 38.39 2.17
5665 9535 5.789574 TCTGTTCACCCCATTAGGTATTT 57.210 39.130 0.00 0.00 38.39 1.40
5666 9536 5.994416 ATCTGTTCACCCCATTAGGTATT 57.006 39.130 0.00 0.00 38.39 1.89
5667 9537 5.454755 CGAATCTGTTCACCCCATTAGGTAT 60.455 44.000 0.00 0.00 38.39 2.73
5668 9538 4.141801 CGAATCTGTTCACCCCATTAGGTA 60.142 45.833 0.00 0.00 38.39 3.08
5669 9539 3.370527 CGAATCTGTTCACCCCATTAGGT 60.371 47.826 0.00 0.00 42.40 3.08
5670 9540 3.206150 CGAATCTGTTCACCCCATTAGG 58.794 50.000 0.00 0.00 33.86 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.