Multiple sequence alignment - TraesCS6A01G027000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G027000 chr6A 100.000 4183 0 0 1 4183 13668592 13664410 0.000000e+00 7725.0
1 TraesCS6A01G027000 chr6A 90.141 142 11 3 909 1048 14659620 14659480 9.240000e-42 182.0
2 TraesCS6A01G027000 chr6D 94.616 3622 101 38 638 4183 12311897 12308294 0.000000e+00 5522.0
3 TraesCS6A01G027000 chr6D 85.987 157 13 3 4 157 12312495 12312345 4.330000e-35 159.0
4 TraesCS6A01G027000 chr6B 94.147 2853 119 24 1343 4183 22558723 22555907 0.000000e+00 4300.0
5 TraesCS6A01G027000 chr6B 88.797 1580 111 35 685 2226 22559386 22557835 0.000000e+00 1877.0
6 TraesCS6A01G027000 chr2D 90.030 331 30 2 2250 2578 556200430 556200101 3.870000e-115 425.0
7 TraesCS6A01G027000 chr2D 89.426 331 33 1 2250 2578 564446426 564446096 2.330000e-112 416.0
8 TraesCS6A01G027000 chr2D 97.436 39 1 0 4145 4183 564446074 564446036 2.700000e-07 67.6
9 TraesCS6A01G027000 chr2D 94.872 39 2 0 4145 4183 556200079 556200041 1.260000e-05 62.1
10 TraesCS6A01G027000 chr2D 97.222 36 1 0 4148 4183 564584306 564584271 1.260000e-05 62.1
11 TraesCS6A01G027000 chr2A 89.297 327 32 2 2250 2574 695952130 695951805 1.400000e-109 407.0
12 TraesCS6A01G027000 chr2A 88.991 327 33 2 2250 2574 695776414 695776089 6.510000e-108 401.0
13 TraesCS6A01G027000 chr4A 88.957 326 34 2 2255 2578 30742647 30742322 6.510000e-108 401.0
14 TraesCS6A01G027000 chr4B 88.520 331 35 2 2250 2578 22464845 22465174 8.430000e-107 398.0
15 TraesCS6A01G027000 chr4B 97.436 39 1 0 4145 4183 22465196 22465234 2.700000e-07 67.6
16 TraesCS6A01G027000 chr3D 88.788 330 29 6 2251 2578 482857506 482857829 8.430000e-107 398.0
17 TraesCS6A01G027000 chr3D 97.436 39 1 0 4145 4183 482857851 482857889 2.700000e-07 67.6
18 TraesCS6A01G027000 chr2B 100.000 39 0 0 4145 4183 601695564 601695526 5.800000e-09 73.1
19 TraesCS6A01G027000 chr2B 97.436 39 1 0 4145 4183 663367387 663367425 2.700000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G027000 chr6A 13664410 13668592 4182 True 7725.0 7725 100.0000 1 4183 1 chr6A.!!$R1 4182
1 TraesCS6A01G027000 chr6D 12308294 12312495 4201 True 2840.5 5522 90.3015 4 4183 2 chr6D.!!$R1 4179
2 TraesCS6A01G027000 chr6B 22555907 22559386 3479 True 3088.5 4300 91.4720 685 4183 2 chr6B.!!$R1 3498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 418 0.032130 CGGGATGGTGTGGATCTACG 59.968 60.000 4.63 0.00 0.00 3.51 F
507 511 0.100682 TAGCGTGGATCTTCGAGCAC 59.899 55.000 12.54 1.71 0.00 4.40 F
509 513 0.807667 GCGTGGATCTTCGAGCACAT 60.808 55.000 12.54 0.00 0.00 3.21 F
1098 1511 1.064946 GATGGACGAGCAGGACGAG 59.935 63.158 0.00 0.00 34.70 4.18 F
1201 1617 1.519455 CAGGACGACAATCCGCCTC 60.519 63.158 0.00 0.00 44.22 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 2280 0.038166 CCCAGTGGTACCTTGTGCAT 59.962 55.000 14.36 0.0 0.00 3.96 R
2134 2595 1.736681 GCCTGACTTTGTGCTCTGATC 59.263 52.381 0.00 0.0 0.00 2.92 R
2258 2719 9.485206 GAATAAACGGAATAGCTTGGATTAGTA 57.515 33.333 0.00 0.0 0.00 1.82 R
2968 3436 4.233789 TGGCGTTCATAAGAAAACATTGC 58.766 39.130 0.00 0.0 35.08 3.56 R
3443 3911 3.503839 GTGGTTGGGGGTGTGGGA 61.504 66.667 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.754372 TTCATGTGTGTTCATCTTGAGC 57.246 40.909 0.00 0.00 0.00 4.26
29 30 4.979943 TGTGTGTTCATCTTGAGCAAAA 57.020 36.364 0.00 0.00 39.27 2.44
152 156 4.330894 TGCGCTCAAGAATGTTATCTCAAG 59.669 41.667 9.73 0.00 0.00 3.02
157 161 7.247019 GCTCAAGAATGTTATCTCAAGGTTTC 58.753 38.462 0.00 0.00 0.00 2.78
158 162 7.120432 GCTCAAGAATGTTATCTCAAGGTTTCT 59.880 37.037 0.00 0.00 0.00 2.52
159 163 8.924511 TCAAGAATGTTATCTCAAGGTTTCTT 57.075 30.769 0.00 0.00 33.68 2.52
160 164 9.354673 TCAAGAATGTTATCTCAAGGTTTCTTT 57.645 29.630 0.00 0.00 31.70 2.52
161 165 9.971922 CAAGAATGTTATCTCAAGGTTTCTTTT 57.028 29.630 0.00 0.00 31.70 2.27
193 197 3.732048 GGGGGTTATCTCAAGGTTTCA 57.268 47.619 0.00 0.00 0.00 2.69
194 198 3.621558 GGGGGTTATCTCAAGGTTTCAG 58.378 50.000 0.00 0.00 0.00 3.02
195 199 3.010250 GGGGGTTATCTCAAGGTTTCAGT 59.990 47.826 0.00 0.00 0.00 3.41
196 200 4.010349 GGGGTTATCTCAAGGTTTCAGTG 58.990 47.826 0.00 0.00 0.00 3.66
197 201 3.440522 GGGTTATCTCAAGGTTTCAGTGC 59.559 47.826 0.00 0.00 0.00 4.40
198 202 4.072131 GGTTATCTCAAGGTTTCAGTGCA 58.928 43.478 0.00 0.00 0.00 4.57
199 203 4.518970 GGTTATCTCAAGGTTTCAGTGCAA 59.481 41.667 0.00 0.00 0.00 4.08
200 204 5.452777 GTTATCTCAAGGTTTCAGTGCAAC 58.547 41.667 0.00 0.00 0.00 4.17
212 216 2.906047 GTGCAACTGAGAAGCGAGT 58.094 52.632 0.00 0.00 0.00 4.18
213 217 1.221414 GTGCAACTGAGAAGCGAGTT 58.779 50.000 0.00 0.00 32.48 3.01
214 218 2.404215 GTGCAACTGAGAAGCGAGTTA 58.596 47.619 0.00 0.00 31.09 2.24
215 219 2.800544 GTGCAACTGAGAAGCGAGTTAA 59.199 45.455 0.00 0.00 31.09 2.01
216 220 3.433615 GTGCAACTGAGAAGCGAGTTAAT 59.566 43.478 0.00 0.00 31.09 1.40
217 221 4.065088 TGCAACTGAGAAGCGAGTTAATT 58.935 39.130 0.00 0.00 31.09 1.40
218 222 5.120208 GTGCAACTGAGAAGCGAGTTAATTA 59.880 40.000 0.00 0.00 31.09 1.40
219 223 5.699001 TGCAACTGAGAAGCGAGTTAATTAA 59.301 36.000 0.00 0.00 31.09 1.40
220 224 6.016111 GCAACTGAGAAGCGAGTTAATTAAC 58.984 40.000 18.77 18.77 36.46 2.01
221 225 6.234213 CAACTGAGAAGCGAGTTAATTAACG 58.766 40.000 19.92 12.10 40.96 3.18
227 231 3.034406 GCGAGTTAATTAACGCCACTG 57.966 47.619 21.62 11.66 44.27 3.66
228 232 2.222953 GCGAGTTAATTAACGCCACTGG 60.223 50.000 21.62 11.36 44.27 4.00
229 233 2.997986 CGAGTTAATTAACGCCACTGGT 59.002 45.455 21.62 4.69 40.96 4.00
230 234 3.434299 CGAGTTAATTAACGCCACTGGTT 59.566 43.478 21.62 4.06 40.96 3.67
231 235 4.083696 CGAGTTAATTAACGCCACTGGTTT 60.084 41.667 21.62 3.42 40.96 3.27
232 236 5.120519 CGAGTTAATTAACGCCACTGGTTTA 59.879 40.000 21.62 0.00 40.96 2.01
233 237 6.347563 CGAGTTAATTAACGCCACTGGTTTAA 60.348 38.462 21.62 2.23 40.96 1.52
234 238 7.274603 AGTTAATTAACGCCACTGGTTTAAA 57.725 32.000 19.92 0.00 40.96 1.52
235 239 7.364970 AGTTAATTAACGCCACTGGTTTAAAG 58.635 34.615 19.92 0.00 40.96 1.85
236 240 3.629438 TTAACGCCACTGGTTTAAAGC 57.371 42.857 10.47 10.47 0.00 3.51
237 241 0.671796 AACGCCACTGGTTTAAAGCC 59.328 50.000 14.49 7.30 0.00 4.35
238 242 0.466555 ACGCCACTGGTTTAAAGCCA 60.467 50.000 14.49 11.13 34.42 4.75
239 243 0.039527 CGCCACTGGTTTAAAGCCAC 60.040 55.000 14.49 1.39 31.85 5.01
240 244 0.039527 GCCACTGGTTTAAAGCCACG 60.040 55.000 14.49 6.02 31.85 4.94
241 245 0.039527 CCACTGGTTTAAAGCCACGC 60.040 55.000 14.49 0.00 31.85 5.34
242 246 0.665835 CACTGGTTTAAAGCCACGCA 59.334 50.000 14.49 0.00 31.85 5.24
243 247 1.066303 CACTGGTTTAAAGCCACGCAA 59.934 47.619 14.49 0.00 31.85 4.85
244 248 1.066454 ACTGGTTTAAAGCCACGCAAC 59.934 47.619 14.49 0.00 31.85 4.17
245 249 1.066303 CTGGTTTAAAGCCACGCAACA 59.934 47.619 14.49 0.00 31.85 3.33
246 250 1.683917 TGGTTTAAAGCCACGCAACAT 59.316 42.857 14.49 0.00 0.00 2.71
247 251 2.885266 TGGTTTAAAGCCACGCAACATA 59.115 40.909 14.49 0.00 0.00 2.29
248 252 3.318275 TGGTTTAAAGCCACGCAACATAA 59.682 39.130 14.49 0.00 0.00 1.90
249 253 4.202121 TGGTTTAAAGCCACGCAACATAAA 60.202 37.500 14.49 0.00 0.00 1.40
250 254 4.149221 GGTTTAAAGCCACGCAACATAAAC 59.851 41.667 6.10 0.00 33.32 2.01
251 255 4.569761 TTAAAGCCACGCAACATAAACA 57.430 36.364 0.00 0.00 0.00 2.83
252 256 2.415697 AAGCCACGCAACATAAACAC 57.584 45.000 0.00 0.00 0.00 3.32
253 257 1.313772 AGCCACGCAACATAAACACA 58.686 45.000 0.00 0.00 0.00 3.72
254 258 1.001815 AGCCACGCAACATAAACACAC 60.002 47.619 0.00 0.00 0.00 3.82
255 259 1.928595 GCCACGCAACATAAACACACC 60.929 52.381 0.00 0.00 0.00 4.16
256 260 1.335182 CCACGCAACATAAACACACCA 59.665 47.619 0.00 0.00 0.00 4.17
257 261 2.223595 CCACGCAACATAAACACACCAA 60.224 45.455 0.00 0.00 0.00 3.67
258 262 3.042189 CACGCAACATAAACACACCAAG 58.958 45.455 0.00 0.00 0.00 3.61
259 263 2.050691 CGCAACATAAACACACCAAGC 58.949 47.619 0.00 0.00 0.00 4.01
260 264 2.287547 CGCAACATAAACACACCAAGCT 60.288 45.455 0.00 0.00 0.00 3.74
261 265 3.052036 GCAACATAAACACACCAAGCTG 58.948 45.455 0.00 0.00 0.00 4.24
262 266 3.490761 GCAACATAAACACACCAAGCTGT 60.491 43.478 0.00 0.00 0.00 4.40
263 267 4.290155 CAACATAAACACACCAAGCTGTC 58.710 43.478 0.00 0.00 0.00 3.51
264 268 3.820557 ACATAAACACACCAAGCTGTCT 58.179 40.909 0.00 0.00 0.00 3.41
265 269 4.207165 ACATAAACACACCAAGCTGTCTT 58.793 39.130 0.00 0.00 0.00 3.01
276 280 4.572985 CAAGCTGTCTTGGAAATCACAA 57.427 40.909 0.00 0.00 44.53 3.33
277 281 4.935702 CAAGCTGTCTTGGAAATCACAAA 58.064 39.130 0.00 0.00 44.53 2.83
278 282 4.843220 AGCTGTCTTGGAAATCACAAAG 57.157 40.909 0.00 0.00 0.00 2.77
279 283 4.210331 AGCTGTCTTGGAAATCACAAAGT 58.790 39.130 0.00 0.00 0.00 2.66
280 284 5.376625 AGCTGTCTTGGAAATCACAAAGTA 58.623 37.500 0.00 0.00 0.00 2.24
281 285 5.239525 AGCTGTCTTGGAAATCACAAAGTAC 59.760 40.000 0.00 0.00 0.00 2.73
282 286 5.562890 GCTGTCTTGGAAATCACAAAGTACC 60.563 44.000 0.00 0.00 0.00 3.34
283 287 5.441500 TGTCTTGGAAATCACAAAGTACCA 58.558 37.500 0.00 0.00 0.00 3.25
284 288 5.888724 TGTCTTGGAAATCACAAAGTACCAA 59.111 36.000 0.00 0.00 35.22 3.67
286 290 4.846779 TGGAAATCACAAAGTACCAAGC 57.153 40.909 0.00 0.00 0.00 4.01
287 291 4.469657 TGGAAATCACAAAGTACCAAGCT 58.530 39.130 0.00 0.00 0.00 3.74
288 292 4.278170 TGGAAATCACAAAGTACCAAGCTG 59.722 41.667 0.00 0.00 0.00 4.24
289 293 4.518970 GGAAATCACAAAGTACCAAGCTGA 59.481 41.667 0.00 0.00 0.00 4.26
290 294 5.183904 GGAAATCACAAAGTACCAAGCTGAT 59.816 40.000 0.00 0.00 0.00 2.90
291 295 6.294731 GGAAATCACAAAGTACCAAGCTGATT 60.295 38.462 0.00 0.00 0.00 2.57
292 296 6.655078 AATCACAAAGTACCAAGCTGATTT 57.345 33.333 0.00 0.00 0.00 2.17
293 297 6.655078 ATCACAAAGTACCAAGCTGATTTT 57.345 33.333 0.00 0.00 0.00 1.82
294 298 5.830912 TCACAAAGTACCAAGCTGATTTTG 58.169 37.500 0.00 0.00 0.00 2.44
295 299 5.359576 TCACAAAGTACCAAGCTGATTTTGT 59.640 36.000 0.00 0.00 37.66 2.83
296 300 5.687285 CACAAAGTACCAAGCTGATTTTGTC 59.313 40.000 8.09 0.00 35.73 3.18
297 301 5.359576 ACAAAGTACCAAGCTGATTTTGTCA 59.640 36.000 0.00 0.00 33.46 3.58
298 302 6.040842 ACAAAGTACCAAGCTGATTTTGTCAT 59.959 34.615 0.00 0.00 35.97 3.06
299 303 5.886960 AGTACCAAGCTGATTTTGTCATC 57.113 39.130 0.00 0.00 35.97 2.92
300 304 5.316167 AGTACCAAGCTGATTTTGTCATCA 58.684 37.500 0.00 0.00 35.97 3.07
309 313 4.661125 TGATTTTGTCATCAGCGTATTGC 58.339 39.130 0.00 0.00 46.98 3.56
310 314 5.448225 CTGATTTTGTCATCAGCGTATTGCT 60.448 40.000 0.00 0.00 46.11 3.91
311 315 6.895026 CTGATTTTGTCATCAGCGTATTGCTT 60.895 38.462 0.00 0.00 43.98 3.91
312 316 8.610471 CTGATTTTGTCATCAGCGTATTGCTTC 61.610 40.741 0.00 0.00 43.98 3.86
322 326 4.522297 GCGTATTGCTTCTCCTTACAAG 57.478 45.455 0.00 0.00 41.73 3.16
323 327 4.181578 GCGTATTGCTTCTCCTTACAAGA 58.818 43.478 0.00 0.00 41.73 3.02
324 328 4.268884 GCGTATTGCTTCTCCTTACAAGAG 59.731 45.833 0.00 0.00 41.73 2.85
325 329 5.411781 CGTATTGCTTCTCCTTACAAGAGT 58.588 41.667 0.00 0.00 32.93 3.24
326 330 6.561614 CGTATTGCTTCTCCTTACAAGAGTA 58.438 40.000 0.00 0.00 32.93 2.59
327 331 7.203910 CGTATTGCTTCTCCTTACAAGAGTAT 58.796 38.462 0.00 0.00 32.93 2.12
328 332 8.350722 CGTATTGCTTCTCCTTACAAGAGTATA 58.649 37.037 0.00 0.00 32.93 1.47
333 337 9.197306 TGCTTCTCCTTACAAGAGTATATTACA 57.803 33.333 0.00 0.00 32.93 2.41
334 338 9.465985 GCTTCTCCTTACAAGAGTATATTACAC 57.534 37.037 0.00 0.00 32.93 2.90
344 348 9.036980 ACAAGAGTATATTACACAAGAGAAGGT 57.963 33.333 0.00 0.00 0.00 3.50
375 379 9.707957 ACCTATGTCATTTATATTTGGGTTCAA 57.292 29.630 0.00 0.00 0.00 2.69
376 380 9.965824 CCTATGTCATTTATATTTGGGTTCAAC 57.034 33.333 0.00 0.00 31.78 3.18
377 381 9.965824 CTATGTCATTTATATTTGGGTTCAACC 57.034 33.333 0.00 0.00 37.60 3.77
378 382 8.608185 ATGTCATTTATATTTGGGTTCAACCT 57.392 30.769 6.51 0.00 38.64 3.50
379 383 8.429237 TGTCATTTATATTTGGGTTCAACCTT 57.571 30.769 6.51 0.00 38.64 3.50
380 384 9.535170 TGTCATTTATATTTGGGTTCAACCTTA 57.465 29.630 6.51 0.00 38.64 2.69
381 385 9.797556 GTCATTTATATTTGGGTTCAACCTTAC 57.202 33.333 6.51 0.00 38.64 2.34
382 386 9.762381 TCATTTATATTTGGGTTCAACCTTACT 57.238 29.630 6.51 0.00 38.64 2.24
383 387 9.801873 CATTTATATTTGGGTTCAACCTTACTG 57.198 33.333 6.51 0.00 38.64 2.74
384 388 9.762381 ATTTATATTTGGGTTCAACCTTACTGA 57.238 29.630 6.51 0.00 38.64 3.41
385 389 9.762381 TTTATATTTGGGTTCAACCTTACTGAT 57.238 29.630 6.51 0.00 38.64 2.90
388 392 9.936329 ATATTTGGGTTCAACCTTACTGATATT 57.064 29.630 6.51 0.00 38.64 1.28
389 393 7.696992 TTTGGGTTCAACCTTACTGATATTC 57.303 36.000 6.51 0.00 38.64 1.75
390 394 6.636454 TGGGTTCAACCTTACTGATATTCT 57.364 37.500 6.51 0.00 38.64 2.40
391 395 7.027874 TGGGTTCAACCTTACTGATATTCTT 57.972 36.000 6.51 0.00 38.64 2.52
392 396 7.466804 TGGGTTCAACCTTACTGATATTCTTT 58.533 34.615 6.51 0.00 38.64 2.52
393 397 7.947890 TGGGTTCAACCTTACTGATATTCTTTT 59.052 33.333 6.51 0.00 38.64 2.27
394 398 8.803235 GGGTTCAACCTTACTGATATTCTTTTT 58.197 33.333 6.51 0.00 38.64 1.94
395 399 9.841880 GGTTCAACCTTACTGATATTCTTTTTC 57.158 33.333 0.00 0.00 34.73 2.29
396 400 9.543018 GTTCAACCTTACTGATATTCTTTTTCG 57.457 33.333 0.00 0.00 0.00 3.46
397 401 8.263940 TCAACCTTACTGATATTCTTTTTCGG 57.736 34.615 0.00 0.00 0.00 4.30
398 402 7.335924 TCAACCTTACTGATATTCTTTTTCGGG 59.664 37.037 0.00 0.00 0.00 5.14
399 403 6.954232 ACCTTACTGATATTCTTTTTCGGGA 58.046 36.000 0.00 0.00 0.00 5.14
400 404 7.574607 ACCTTACTGATATTCTTTTTCGGGAT 58.425 34.615 0.00 0.00 0.00 3.85
401 405 7.499232 ACCTTACTGATATTCTTTTTCGGGATG 59.501 37.037 0.00 0.00 0.00 3.51
402 406 7.041098 CCTTACTGATATTCTTTTTCGGGATGG 60.041 40.741 0.00 0.00 0.00 3.51
403 407 5.755849 ACTGATATTCTTTTTCGGGATGGT 58.244 37.500 0.00 0.00 0.00 3.55
404 408 5.590259 ACTGATATTCTTTTTCGGGATGGTG 59.410 40.000 0.00 0.00 0.00 4.17
405 409 5.505780 TGATATTCTTTTTCGGGATGGTGT 58.494 37.500 0.00 0.00 0.00 4.16
406 410 5.356751 TGATATTCTTTTTCGGGATGGTGTG 59.643 40.000 0.00 0.00 0.00 3.82
407 411 1.904287 TCTTTTTCGGGATGGTGTGG 58.096 50.000 0.00 0.00 0.00 4.17
408 412 1.422024 TCTTTTTCGGGATGGTGTGGA 59.578 47.619 0.00 0.00 0.00 4.02
409 413 2.041081 TCTTTTTCGGGATGGTGTGGAT 59.959 45.455 0.00 0.00 0.00 3.41
410 414 2.122783 TTTTCGGGATGGTGTGGATC 57.877 50.000 0.00 0.00 0.00 3.36
411 415 1.285280 TTTCGGGATGGTGTGGATCT 58.715 50.000 0.00 0.00 0.00 2.75
412 416 2.168458 TTCGGGATGGTGTGGATCTA 57.832 50.000 0.00 0.00 0.00 1.98
413 417 1.410004 TCGGGATGGTGTGGATCTAC 58.590 55.000 1.56 1.56 0.00 2.59
414 418 0.032130 CGGGATGGTGTGGATCTACG 59.968 60.000 4.63 0.00 0.00 3.51
415 419 1.120530 GGGATGGTGTGGATCTACGT 58.879 55.000 4.63 0.00 0.00 3.57
416 420 1.202533 GGGATGGTGTGGATCTACGTG 60.203 57.143 4.63 0.00 0.00 4.49
417 421 1.754803 GGATGGTGTGGATCTACGTGA 59.245 52.381 4.63 0.00 0.00 4.35
418 422 2.481449 GGATGGTGTGGATCTACGTGAC 60.481 54.545 4.63 0.00 0.00 3.67
419 423 1.919240 TGGTGTGGATCTACGTGACT 58.081 50.000 4.63 0.00 0.00 3.41
420 424 2.244695 TGGTGTGGATCTACGTGACTT 58.755 47.619 4.63 0.00 0.00 3.01
421 425 3.423749 TGGTGTGGATCTACGTGACTTA 58.576 45.455 4.63 0.00 0.00 2.24
422 426 3.442625 TGGTGTGGATCTACGTGACTTAG 59.557 47.826 4.63 0.00 0.00 2.18
423 427 3.442977 GGTGTGGATCTACGTGACTTAGT 59.557 47.826 4.63 0.00 0.00 2.24
424 428 4.082354 GGTGTGGATCTACGTGACTTAGTT 60.082 45.833 4.63 0.00 0.00 2.24
425 429 4.857588 GTGTGGATCTACGTGACTTAGTTG 59.142 45.833 4.63 0.00 0.00 3.16
426 430 4.082408 TGTGGATCTACGTGACTTAGTTGG 60.082 45.833 4.63 0.00 0.00 3.77
427 431 4.082354 GTGGATCTACGTGACTTAGTTGGT 60.082 45.833 0.00 0.00 0.00 3.67
428 432 4.525487 TGGATCTACGTGACTTAGTTGGTT 59.475 41.667 0.00 0.00 0.00 3.67
429 433 5.711506 TGGATCTACGTGACTTAGTTGGTTA 59.288 40.000 0.00 0.00 0.00 2.85
430 434 6.209192 TGGATCTACGTGACTTAGTTGGTTAA 59.791 38.462 0.00 0.00 0.00 2.01
431 435 6.529477 GGATCTACGTGACTTAGTTGGTTAAC 59.471 42.308 0.00 0.00 37.06 2.01
432 436 5.772521 TCTACGTGACTTAGTTGGTTAACC 58.227 41.667 18.27 18.27 37.52 2.85
433 437 3.383761 ACGTGACTTAGTTGGTTAACCG 58.616 45.455 19.65 6.77 37.52 4.44
434 438 3.068024 ACGTGACTTAGTTGGTTAACCGA 59.932 43.478 19.65 15.48 37.52 4.69
435 439 3.671928 CGTGACTTAGTTGGTTAACCGAG 59.328 47.826 19.65 13.43 37.52 4.63
436 440 4.557296 CGTGACTTAGTTGGTTAACCGAGA 60.557 45.833 19.65 6.26 37.52 4.04
437 441 5.476614 GTGACTTAGTTGGTTAACCGAGAT 58.523 41.667 19.65 11.69 37.52 2.75
438 442 5.930569 GTGACTTAGTTGGTTAACCGAGATT 59.069 40.000 19.65 9.02 37.52 2.40
439 443 6.426025 GTGACTTAGTTGGTTAACCGAGATTT 59.574 38.462 19.65 6.73 37.52 2.17
440 444 7.599998 GTGACTTAGTTGGTTAACCGAGATTTA 59.400 37.037 19.65 5.84 37.52 1.40
441 445 8.149647 TGACTTAGTTGGTTAACCGAGATTTAA 58.850 33.333 19.65 12.13 37.52 1.52
442 446 9.159364 GACTTAGTTGGTTAACCGAGATTTAAT 57.841 33.333 19.65 0.56 37.52 1.40
447 451 9.901172 AGTTGGTTAACCGAGATTTAATAGAAT 57.099 29.630 19.65 0.00 37.52 2.40
448 452 9.931210 GTTGGTTAACCGAGATTTAATAGAATG 57.069 33.333 19.65 0.00 39.43 2.67
449 453 9.675464 TTGGTTAACCGAGATTTAATAGAATGT 57.325 29.630 19.65 0.00 39.43 2.71
454 458 8.902540 AACCGAGATTTAATAGAATGTATGCA 57.097 30.769 0.00 0.00 0.00 3.96
455 459 8.311650 ACCGAGATTTAATAGAATGTATGCAC 57.688 34.615 0.00 0.00 0.00 4.57
456 460 8.150945 ACCGAGATTTAATAGAATGTATGCACT 58.849 33.333 0.00 0.00 0.00 4.40
457 461 9.639601 CCGAGATTTAATAGAATGTATGCACTA 57.360 33.333 0.00 0.00 0.00 2.74
484 488 2.384203 GCATGAGCGTTCCTACACC 58.616 57.895 0.00 0.00 0.00 4.16
485 489 0.108138 GCATGAGCGTTCCTACACCT 60.108 55.000 0.00 0.00 0.00 4.00
486 490 1.136305 GCATGAGCGTTCCTACACCTA 59.864 52.381 0.00 0.00 0.00 3.08
487 491 2.224066 GCATGAGCGTTCCTACACCTAT 60.224 50.000 0.00 0.00 0.00 2.57
488 492 3.741388 GCATGAGCGTTCCTACACCTATT 60.741 47.826 0.00 0.00 0.00 1.73
489 493 4.500887 GCATGAGCGTTCCTACACCTATTA 60.501 45.833 0.00 0.00 0.00 0.98
490 494 4.913335 TGAGCGTTCCTACACCTATTAG 57.087 45.455 0.00 0.00 0.00 1.73
491 495 3.067742 TGAGCGTTCCTACACCTATTAGC 59.932 47.826 0.00 0.00 0.00 3.09
492 496 2.034305 AGCGTTCCTACACCTATTAGCG 59.966 50.000 0.00 0.00 0.00 4.26
493 497 2.223665 GCGTTCCTACACCTATTAGCGT 60.224 50.000 0.00 0.00 0.00 5.07
494 498 3.369385 CGTTCCTACACCTATTAGCGTG 58.631 50.000 9.45 9.45 36.04 5.34
495 499 3.714391 GTTCCTACACCTATTAGCGTGG 58.286 50.000 13.45 3.75 34.18 4.94
496 500 3.301794 TCCTACACCTATTAGCGTGGA 57.698 47.619 13.45 6.99 34.18 4.02
497 501 3.840991 TCCTACACCTATTAGCGTGGAT 58.159 45.455 13.45 1.54 34.18 3.41
498 502 3.825014 TCCTACACCTATTAGCGTGGATC 59.175 47.826 13.45 0.00 34.18 3.36
499 503 3.827302 CCTACACCTATTAGCGTGGATCT 59.173 47.826 13.45 0.80 34.18 2.75
500 504 4.281182 CCTACACCTATTAGCGTGGATCTT 59.719 45.833 13.45 0.54 34.18 2.40
501 505 4.323553 ACACCTATTAGCGTGGATCTTC 57.676 45.455 13.45 0.00 34.18 2.87
502 506 3.243434 ACACCTATTAGCGTGGATCTTCG 60.243 47.826 13.45 0.00 34.18 3.79
503 507 3.004419 CACCTATTAGCGTGGATCTTCGA 59.996 47.826 12.54 0.00 0.00 3.71
504 508 3.253677 ACCTATTAGCGTGGATCTTCGAG 59.746 47.826 12.54 2.91 0.00 4.04
505 509 2.141535 ATTAGCGTGGATCTTCGAGC 57.858 50.000 12.54 3.45 0.00 5.03
506 510 0.815095 TTAGCGTGGATCTTCGAGCA 59.185 50.000 12.54 0.00 0.00 4.26
507 511 0.100682 TAGCGTGGATCTTCGAGCAC 59.899 55.000 12.54 1.71 0.00 4.40
508 512 1.446099 GCGTGGATCTTCGAGCACA 60.446 57.895 12.54 0.00 0.00 4.57
509 513 0.807667 GCGTGGATCTTCGAGCACAT 60.808 55.000 12.54 0.00 0.00 3.21
510 514 1.203928 CGTGGATCTTCGAGCACATC 58.796 55.000 4.59 0.00 0.00 3.06
531 535 5.080969 TCGAAAGATTATGGAAAGGTCGT 57.919 39.130 0.00 0.00 33.31 4.34
532 536 5.484715 TCGAAAGATTATGGAAAGGTCGTT 58.515 37.500 0.00 0.00 33.31 3.85
533 537 5.935789 TCGAAAGATTATGGAAAGGTCGTTT 59.064 36.000 0.00 0.00 33.31 3.60
534 538 6.021596 CGAAAGATTATGGAAAGGTCGTTTG 58.978 40.000 0.00 0.00 0.00 2.93
535 539 6.128391 CGAAAGATTATGGAAAGGTCGTTTGA 60.128 38.462 0.00 0.00 0.00 2.69
536 540 7.519032 AAAGATTATGGAAAGGTCGTTTGAA 57.481 32.000 0.00 0.00 0.00 2.69
537 541 7.519032 AAGATTATGGAAAGGTCGTTTGAAA 57.481 32.000 0.00 0.00 0.00 2.69
538 542 6.909909 AGATTATGGAAAGGTCGTTTGAAAC 58.090 36.000 0.00 0.00 0.00 2.78
539 543 5.441709 TTATGGAAAGGTCGTTTGAAACC 57.558 39.130 2.00 0.00 35.69 3.27
541 545 2.946990 TGGAAAGGTCGTTTGAAACCTC 59.053 45.455 2.00 0.00 45.21 3.85
542 546 3.211865 GGAAAGGTCGTTTGAAACCTCT 58.788 45.455 2.00 0.00 45.21 3.69
543 547 4.141665 TGGAAAGGTCGTTTGAAACCTCTA 60.142 41.667 2.00 0.00 45.21 2.43
544 548 4.451435 GGAAAGGTCGTTTGAAACCTCTAG 59.549 45.833 2.00 0.00 45.21 2.43
545 549 3.041508 AGGTCGTTTGAAACCTCTAGC 57.958 47.619 2.00 0.00 42.28 3.42
546 550 2.367567 AGGTCGTTTGAAACCTCTAGCA 59.632 45.455 2.00 0.00 42.28 3.49
547 551 3.135994 GGTCGTTTGAAACCTCTAGCAA 58.864 45.455 2.00 0.00 32.54 3.91
548 552 3.186613 GGTCGTTTGAAACCTCTAGCAAG 59.813 47.826 2.00 0.00 32.54 4.01
549 553 3.186613 GTCGTTTGAAACCTCTAGCAAGG 59.813 47.826 2.00 0.00 42.55 3.61
604 608 8.553696 TGAACGTCAAAACTACTAAAATTCTCC 58.446 33.333 0.00 0.00 0.00 3.71
676 1058 5.552870 ATGTAACTGGTCTTGACTCTGTT 57.447 39.130 13.83 13.83 0.00 3.16
721 1106 4.730949 AATCAATGGGCTCAAGAATGTG 57.269 40.909 0.00 0.00 0.00 3.21
722 1107 3.159213 TCAATGGGCTCAAGAATGTGT 57.841 42.857 0.00 0.00 0.00 3.72
723 1108 3.499338 TCAATGGGCTCAAGAATGTGTT 58.501 40.909 0.00 0.00 0.00 3.32
747 1132 2.034558 CACAGAGCAAATTTCACCGGTT 59.965 45.455 2.97 0.00 0.00 4.44
753 1138 5.983118 AGAGCAAATTTCACCGGTTTAAAAG 59.017 36.000 2.97 5.00 0.00 2.27
754 1139 5.666462 AGCAAATTTCACCGGTTTAAAAGT 58.334 33.333 2.97 2.35 0.00 2.66
755 1140 5.751509 AGCAAATTTCACCGGTTTAAAAGTC 59.248 36.000 2.97 0.86 0.00 3.01
756 1141 5.520649 GCAAATTTCACCGGTTTAAAAGTCA 59.479 36.000 2.97 0.00 0.00 3.41
765 1152 4.796312 CCGGTTTAAAAGTCACACAAGTTG 59.204 41.667 0.00 0.00 0.00 3.16
801 1188 5.504173 GCTGTCTTGAAAACCACAGAGTAAC 60.504 44.000 2.11 0.00 34.85 2.50
837 1224 3.055747 GCAGCCTGAGAGTAAACTAGGTT 60.056 47.826 0.00 0.00 0.00 3.50
893 1290 1.814772 AACACGCTCTGCTCTGCTCT 61.815 55.000 0.00 0.00 0.00 4.09
898 1295 1.952102 GCTCTGCTCTGCTCTGCTCT 61.952 60.000 0.00 0.00 0.00 4.09
926 1339 5.451937 GGAGCGGCAGAGCATATATATTACA 60.452 44.000 1.45 0.00 40.15 2.41
927 1340 5.977635 AGCGGCAGAGCATATATATTACAA 58.022 37.500 1.45 0.00 40.15 2.41
931 1344 6.237942 CGGCAGAGCATATATATTACAAGCAC 60.238 42.308 0.00 0.00 0.00 4.40
966 1379 4.219944 CACACTTGCTACTTGGTAGAGGTA 59.780 45.833 8.66 0.00 38.29 3.08
973 1386 4.828387 GCTACTTGGTAGAGGTATAGCACT 59.172 45.833 7.07 7.07 38.29 4.40
979 1392 7.666388 ACTTGGTAGAGGTATAGCACTACATAG 59.334 40.741 28.72 25.57 37.52 2.23
985 1398 5.087323 AGGTATAGCACTACATAGCACCAT 58.913 41.667 4.48 0.00 0.00 3.55
1098 1511 1.064946 GATGGACGAGCAGGACGAG 59.935 63.158 0.00 0.00 34.70 4.18
1104 1517 2.121538 CGAGCAGGACGAGGATCCA 61.122 63.158 15.82 0.00 41.73 3.41
1110 1523 4.222847 GACGAGGATCCACCCGCC 62.223 72.222 15.82 3.10 40.05 6.13
1201 1617 1.519455 CAGGACGACAATCCGCCTC 60.519 63.158 0.00 0.00 44.22 4.70
1293 1712 2.125912 CCGTCGGACAAGCAGGAG 60.126 66.667 4.91 0.00 0.00 3.69
1294 1713 2.125912 CGTCGGACAAGCAGGAGG 60.126 66.667 9.10 0.00 0.00 4.30
1295 1714 2.636412 CGTCGGACAAGCAGGAGGA 61.636 63.158 9.10 0.00 0.00 3.71
1296 1715 1.901085 GTCGGACAAGCAGGAGGAT 59.099 57.895 2.62 0.00 0.00 3.24
1791 2249 2.597520 GGTACAGACGCACTCTTCTTC 58.402 52.381 0.00 0.00 0.00 2.87
1822 2280 7.584108 CATCTATTTCGCTGGTAAATTATGCA 58.416 34.615 0.00 0.00 0.00 3.96
2094 2554 4.552365 ATGATGCGACCGCCAGGG 62.552 66.667 12.08 0.00 43.47 4.45
2301 2765 6.555315 GTTTATTCAGAGCTGGTATTTGGTG 58.445 40.000 0.00 0.00 0.00 4.17
2857 3324 6.199908 CCAACGAGATATCAGAGCTACTTTTG 59.800 42.308 5.32 0.00 0.00 2.44
2862 3329 7.651304 CGAGATATCAGAGCTACTTTTGTTGAT 59.349 37.037 5.32 0.00 31.95 2.57
2871 3338 6.842163 AGCTACTTTTGTTGATGTTTATCCG 58.158 36.000 0.00 0.00 32.09 4.18
2968 3436 6.924111 ACAGCAGGAAAATAAAGTGTAATGG 58.076 36.000 0.00 0.00 0.00 3.16
3443 3911 0.976641 TTCTTCATCCTCCGCACACT 59.023 50.000 0.00 0.00 0.00 3.55
3464 3936 0.762461 CCACACCCCCAACCACAAAT 60.762 55.000 0.00 0.00 0.00 2.32
3465 3937 1.127343 CACACCCCCAACCACAAATT 58.873 50.000 0.00 0.00 0.00 1.82
3520 3992 2.860062 CACAAACCGGTCTAGTACTCG 58.140 52.381 8.04 0.00 0.00 4.18
3553 4025 4.922206 AGGAAATAAACCATGCAGTCAGA 58.078 39.130 0.00 0.00 0.00 3.27
3565 4037 2.159184 TGCAGTCAGAAATAGAGCTCCG 60.159 50.000 10.93 0.00 0.00 4.63
3600 4072 5.127845 CCTTCCTCTCAGTGATAGCTTAACA 59.872 44.000 0.00 0.00 0.00 2.41
3629 4101 1.412710 TGGGTCGGTAGAATCATGCTC 59.587 52.381 0.00 0.00 0.00 4.26
3649 4121 4.282496 CTCAGAACACCTAGGACCTACAT 58.718 47.826 17.98 0.00 0.00 2.29
3793 4265 8.532186 ACTATATGTGTGGGAAATAAATTGCA 57.468 30.769 0.00 0.00 0.00 4.08
3995 4472 6.690194 ATCCATTTGAAAGTATCAGACAGC 57.310 37.500 0.00 0.00 39.77 4.40
4109 4587 3.754188 CAGTGCTGCTAGTGGATTTTC 57.246 47.619 0.00 0.00 0.00 2.29
4154 4632 2.029918 GGCTTGTTGGCTGAAAACCTAG 60.030 50.000 0.00 0.00 38.32 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.643770 GCTCAAGATGAACACACATGAAAAAT 59.356 34.615 0.00 0.00 0.00 1.82
1 2 5.978919 GCTCAAGATGAACACACATGAAAAA 59.021 36.000 0.00 0.00 0.00 1.94
2 3 5.067544 TGCTCAAGATGAACACACATGAAAA 59.932 36.000 0.00 0.00 0.00 2.29
33 34 9.158233 CAAGAGGAATAACATGCATGAATTTTT 57.842 29.630 32.75 17.53 0.00 1.94
34 35 8.533657 TCAAGAGGAATAACATGCATGAATTTT 58.466 29.630 32.75 19.80 0.00 1.82
35 36 8.070034 TCAAGAGGAATAACATGCATGAATTT 57.930 30.769 32.75 20.25 0.00 1.82
36 37 7.649533 TCAAGAGGAATAACATGCATGAATT 57.350 32.000 32.75 26.95 0.00 2.17
37 38 7.649533 TTCAAGAGGAATAACATGCATGAAT 57.350 32.000 32.75 21.00 0.00 2.57
105 109 3.324846 TGCTCTCACTTTATGGACACTGT 59.675 43.478 0.00 0.00 0.00 3.55
106 110 3.930336 TGCTCTCACTTTATGGACACTG 58.070 45.455 0.00 0.00 0.00 3.66
107 111 3.580458 ACTGCTCTCACTTTATGGACACT 59.420 43.478 0.00 0.00 0.00 3.55
108 112 3.681897 CACTGCTCTCACTTTATGGACAC 59.318 47.826 0.00 0.00 0.00 3.67
173 177 3.010250 ACTGAAACCTTGAGATAACCCCC 59.990 47.826 0.00 0.00 0.00 5.40
174 178 4.010349 CACTGAAACCTTGAGATAACCCC 58.990 47.826 0.00 0.00 0.00 4.95
175 179 3.440522 GCACTGAAACCTTGAGATAACCC 59.559 47.826 0.00 0.00 0.00 4.11
176 180 4.072131 TGCACTGAAACCTTGAGATAACC 58.928 43.478 0.00 0.00 0.00 2.85
177 181 5.239525 AGTTGCACTGAAACCTTGAGATAAC 59.760 40.000 0.00 0.00 0.00 1.89
178 182 5.376625 AGTTGCACTGAAACCTTGAGATAA 58.623 37.500 0.00 0.00 0.00 1.75
179 183 4.973168 AGTTGCACTGAAACCTTGAGATA 58.027 39.130 0.00 0.00 0.00 1.98
180 184 3.825328 AGTTGCACTGAAACCTTGAGAT 58.175 40.909 0.00 0.00 0.00 2.75
181 185 3.281727 AGTTGCACTGAAACCTTGAGA 57.718 42.857 0.00 0.00 0.00 3.27
193 197 0.390860 ACTCGCTTCTCAGTTGCACT 59.609 50.000 0.00 0.00 0.00 4.40
194 198 1.221414 AACTCGCTTCTCAGTTGCAC 58.779 50.000 0.00 0.00 31.42 4.57
195 199 2.812358 TAACTCGCTTCTCAGTTGCA 57.188 45.000 0.00 0.00 34.60 4.08
196 200 4.670227 AATTAACTCGCTTCTCAGTTGC 57.330 40.909 0.00 0.00 34.60 4.17
197 201 6.234213 CGTTAATTAACTCGCTTCTCAGTTG 58.766 40.000 22.57 2.20 34.60 3.16
198 202 5.163982 GCGTTAATTAACTCGCTTCTCAGTT 60.164 40.000 22.57 0.00 44.28 3.16
199 203 4.326548 GCGTTAATTAACTCGCTTCTCAGT 59.673 41.667 22.57 0.00 44.28 3.41
200 204 4.259850 GGCGTTAATTAACTCGCTTCTCAG 60.260 45.833 23.91 9.50 46.37 3.35
201 205 3.615496 GGCGTTAATTAACTCGCTTCTCA 59.385 43.478 23.91 0.00 46.37 3.27
202 206 3.615496 TGGCGTTAATTAACTCGCTTCTC 59.385 43.478 23.91 13.20 46.37 2.87
203 207 3.370061 GTGGCGTTAATTAACTCGCTTCT 59.630 43.478 23.91 0.00 46.37 2.85
204 208 3.370061 AGTGGCGTTAATTAACTCGCTTC 59.630 43.478 23.91 18.46 46.37 3.86
205 209 3.124636 CAGTGGCGTTAATTAACTCGCTT 59.875 43.478 23.91 12.82 46.37 4.68
206 210 2.671396 CAGTGGCGTTAATTAACTCGCT 59.329 45.455 23.91 21.70 46.37 4.93
207 211 2.222953 CCAGTGGCGTTAATTAACTCGC 60.223 50.000 22.57 20.92 46.42 5.03
208 212 2.997986 ACCAGTGGCGTTAATTAACTCG 59.002 45.455 22.57 13.62 34.12 4.18
209 213 5.366829 AAACCAGTGGCGTTAATTAACTC 57.633 39.130 22.57 16.32 34.12 3.01
210 214 6.880942 TTAAACCAGTGGCGTTAATTAACT 57.119 33.333 22.57 4.12 34.12 2.24
211 215 6.088483 GCTTTAAACCAGTGGCGTTAATTAAC 59.912 38.462 16.87 16.87 0.00 2.01
212 216 6.151004 GCTTTAAACCAGTGGCGTTAATTAA 58.849 36.000 9.78 3.30 0.00 1.40
213 217 5.335819 GGCTTTAAACCAGTGGCGTTAATTA 60.336 40.000 9.78 0.26 0.00 1.40
214 218 4.552355 GCTTTAAACCAGTGGCGTTAATT 58.448 39.130 9.78 0.00 0.00 1.40
215 219 3.057104 GGCTTTAAACCAGTGGCGTTAAT 60.057 43.478 9.78 0.00 0.00 1.40
216 220 2.293955 GGCTTTAAACCAGTGGCGTTAA 59.706 45.455 9.78 11.50 0.00 2.01
217 221 1.881324 GGCTTTAAACCAGTGGCGTTA 59.119 47.619 9.78 5.40 0.00 3.18
218 222 0.671796 GGCTTTAAACCAGTGGCGTT 59.328 50.000 9.78 6.50 0.00 4.84
219 223 0.466555 TGGCTTTAAACCAGTGGCGT 60.467 50.000 9.78 0.00 32.06 5.68
220 224 0.039527 GTGGCTTTAAACCAGTGGCG 60.040 55.000 9.78 0.00 38.04 5.69
221 225 0.039527 CGTGGCTTTAAACCAGTGGC 60.040 55.000 9.78 0.00 38.04 5.01
222 226 0.039527 GCGTGGCTTTAAACCAGTGG 60.040 55.000 7.91 7.91 38.04 4.00
223 227 0.665835 TGCGTGGCTTTAAACCAGTG 59.334 50.000 9.04 7.01 38.04 3.66
224 228 1.066454 GTTGCGTGGCTTTAAACCAGT 59.934 47.619 9.04 0.00 38.04 4.00
225 229 1.066303 TGTTGCGTGGCTTTAAACCAG 59.934 47.619 9.04 6.10 38.04 4.00
226 230 1.103803 TGTTGCGTGGCTTTAAACCA 58.896 45.000 5.67 5.67 33.84 3.67
227 231 2.432206 ATGTTGCGTGGCTTTAAACC 57.568 45.000 0.00 0.00 0.00 3.27
228 232 4.740695 TGTTTATGTTGCGTGGCTTTAAAC 59.259 37.500 0.00 0.00 0.00 2.01
229 233 4.740695 GTGTTTATGTTGCGTGGCTTTAAA 59.259 37.500 0.00 0.00 0.00 1.52
230 234 4.202020 TGTGTTTATGTTGCGTGGCTTTAA 60.202 37.500 0.00 0.00 0.00 1.52
231 235 3.315470 TGTGTTTATGTTGCGTGGCTTTA 59.685 39.130 0.00 0.00 0.00 1.85
232 236 2.099921 TGTGTTTATGTTGCGTGGCTTT 59.900 40.909 0.00 0.00 0.00 3.51
233 237 1.678627 TGTGTTTATGTTGCGTGGCTT 59.321 42.857 0.00 0.00 0.00 4.35
234 238 1.001815 GTGTGTTTATGTTGCGTGGCT 60.002 47.619 0.00 0.00 0.00 4.75
235 239 1.404477 GTGTGTTTATGTTGCGTGGC 58.596 50.000 0.00 0.00 0.00 5.01
236 240 1.335182 TGGTGTGTTTATGTTGCGTGG 59.665 47.619 0.00 0.00 0.00 4.94
237 241 2.765108 TGGTGTGTTTATGTTGCGTG 57.235 45.000 0.00 0.00 0.00 5.34
238 242 2.542824 GCTTGGTGTGTTTATGTTGCGT 60.543 45.455 0.00 0.00 0.00 5.24
239 243 2.050691 GCTTGGTGTGTTTATGTTGCG 58.949 47.619 0.00 0.00 0.00 4.85
240 244 3.052036 CAGCTTGGTGTGTTTATGTTGC 58.948 45.455 0.00 0.00 0.00 4.17
241 245 4.036734 AGACAGCTTGGTGTGTTTATGTTG 59.963 41.667 10.29 0.00 0.00 3.33
242 246 4.207165 AGACAGCTTGGTGTGTTTATGTT 58.793 39.130 10.29 0.00 0.00 2.71
243 247 3.820557 AGACAGCTTGGTGTGTTTATGT 58.179 40.909 10.29 0.00 0.00 2.29
244 248 4.539870 CAAGACAGCTTGGTGTGTTTATG 58.460 43.478 10.29 0.00 46.13 1.90
245 249 4.836125 CAAGACAGCTTGGTGTGTTTAT 57.164 40.909 10.29 0.00 46.13 1.40
256 260 4.646492 ACTTTGTGATTTCCAAGACAGCTT 59.354 37.500 0.00 0.00 33.74 3.74
257 261 4.210331 ACTTTGTGATTTCCAAGACAGCT 58.790 39.130 0.00 0.00 0.00 4.24
258 262 4.574599 ACTTTGTGATTTCCAAGACAGC 57.425 40.909 0.00 0.00 0.00 4.40
259 263 5.530915 TGGTACTTTGTGATTTCCAAGACAG 59.469 40.000 0.00 0.00 0.00 3.51
260 264 5.441500 TGGTACTTTGTGATTTCCAAGACA 58.558 37.500 0.00 0.00 0.00 3.41
261 265 6.385649 TTGGTACTTTGTGATTTCCAAGAC 57.614 37.500 0.00 0.00 0.00 3.01
264 268 4.892934 AGCTTGGTACTTTGTGATTTCCAA 59.107 37.500 0.00 0.00 33.41 3.53
265 269 4.278170 CAGCTTGGTACTTTGTGATTTCCA 59.722 41.667 0.00 0.00 0.00 3.53
266 270 4.518970 TCAGCTTGGTACTTTGTGATTTCC 59.481 41.667 0.00 0.00 0.00 3.13
267 271 5.689383 TCAGCTTGGTACTTTGTGATTTC 57.311 39.130 0.00 0.00 0.00 2.17
268 272 6.655078 AATCAGCTTGGTACTTTGTGATTT 57.345 33.333 0.00 0.00 30.80 2.17
269 273 6.655078 AAATCAGCTTGGTACTTTGTGATT 57.345 33.333 0.00 0.00 35.25 2.57
270 274 6.040842 ACAAAATCAGCTTGGTACTTTGTGAT 59.959 34.615 4.01 0.00 35.00 3.06
271 275 5.359576 ACAAAATCAGCTTGGTACTTTGTGA 59.640 36.000 4.01 0.00 35.00 3.58
272 276 5.591099 ACAAAATCAGCTTGGTACTTTGTG 58.409 37.500 4.01 0.00 35.00 3.33
273 277 5.359576 TGACAAAATCAGCTTGGTACTTTGT 59.640 36.000 4.37 4.37 38.01 2.83
274 278 5.830912 TGACAAAATCAGCTTGGTACTTTG 58.169 37.500 0.00 0.00 31.91 2.77
275 279 6.265196 TGATGACAAAATCAGCTTGGTACTTT 59.735 34.615 0.00 0.00 44.50 2.66
276 280 5.769662 TGATGACAAAATCAGCTTGGTACTT 59.230 36.000 0.00 0.00 44.50 2.24
277 281 5.316167 TGATGACAAAATCAGCTTGGTACT 58.684 37.500 0.00 0.00 44.50 2.73
278 282 5.627499 TGATGACAAAATCAGCTTGGTAC 57.373 39.130 0.00 0.00 44.50 3.34
279 283 5.885230 CTGATGACAAAATCAGCTTGGTA 57.115 39.130 1.53 0.00 45.17 3.25
280 284 4.778534 CTGATGACAAAATCAGCTTGGT 57.221 40.909 1.53 0.00 45.17 3.67
287 291 4.661125 GCAATACGCTGATGACAAAATCA 58.339 39.130 0.00 0.00 38.78 2.57
300 304 8.247517 ACTCTTGTAAGGAGAAGCAATACGCT 62.248 42.308 0.00 0.00 42.51 5.07
301 305 4.181578 TCTTGTAAGGAGAAGCAATACGC 58.818 43.478 0.00 0.00 42.91 4.42
302 306 5.411781 ACTCTTGTAAGGAGAAGCAATACG 58.588 41.667 0.00 0.00 35.10 3.06
307 311 9.197306 TGTAATATACTCTTGTAAGGAGAAGCA 57.803 33.333 0.00 0.00 35.10 3.91
308 312 9.465985 GTGTAATATACTCTTGTAAGGAGAAGC 57.534 37.037 0.00 0.00 35.10 3.86
318 322 9.036980 ACCTTCTCTTGTGTAATATACTCTTGT 57.963 33.333 0.00 0.00 0.00 3.16
349 353 9.707957 TTGAACCCAAATATAAATGACATAGGT 57.292 29.630 0.00 0.00 0.00 3.08
350 354 9.965824 GTTGAACCCAAATATAAATGACATAGG 57.034 33.333 0.00 0.00 33.49 2.57
351 355 9.965824 GGTTGAACCCAAATATAAATGACATAG 57.034 33.333 2.08 0.00 33.49 2.23
352 356 9.707957 AGGTTGAACCCAAATATAAATGACATA 57.292 29.630 11.41 0.00 39.75 2.29
353 357 8.608185 AGGTTGAACCCAAATATAAATGACAT 57.392 30.769 11.41 0.00 39.75 3.06
354 358 8.429237 AAGGTTGAACCCAAATATAAATGACA 57.571 30.769 11.41 0.00 39.75 3.58
355 359 9.797556 GTAAGGTTGAACCCAAATATAAATGAC 57.202 33.333 11.41 0.00 39.75 3.06
356 360 9.762381 AGTAAGGTTGAACCCAAATATAAATGA 57.238 29.630 11.41 0.00 39.75 2.57
357 361 9.801873 CAGTAAGGTTGAACCCAAATATAAATG 57.198 33.333 11.41 0.00 39.75 2.32
358 362 9.762381 TCAGTAAGGTTGAACCCAAATATAAAT 57.238 29.630 11.41 0.00 39.75 1.40
359 363 9.762381 ATCAGTAAGGTTGAACCCAAATATAAA 57.238 29.630 11.41 0.00 39.75 1.40
362 366 9.936329 AATATCAGTAAGGTTGAACCCAAATAT 57.064 29.630 11.41 4.03 39.75 1.28
363 367 9.403583 GAATATCAGTAAGGTTGAACCCAAATA 57.596 33.333 11.41 1.86 39.75 1.40
364 368 8.116026 AGAATATCAGTAAGGTTGAACCCAAAT 58.884 33.333 11.41 0.00 39.75 2.32
365 369 7.466804 AGAATATCAGTAAGGTTGAACCCAAA 58.533 34.615 11.41 0.00 39.75 3.28
366 370 7.027874 AGAATATCAGTAAGGTTGAACCCAA 57.972 36.000 11.41 0.00 39.75 4.12
367 371 6.636454 AGAATATCAGTAAGGTTGAACCCA 57.364 37.500 11.41 0.00 39.75 4.51
368 372 7.939784 AAAGAATATCAGTAAGGTTGAACCC 57.060 36.000 11.41 0.00 39.75 4.11
369 373 9.841880 GAAAAAGAATATCAGTAAGGTTGAACC 57.158 33.333 6.16 6.16 38.99 3.62
370 374 9.543018 CGAAAAAGAATATCAGTAAGGTTGAAC 57.457 33.333 0.00 0.00 0.00 3.18
371 375 8.726988 CCGAAAAAGAATATCAGTAAGGTTGAA 58.273 33.333 0.00 0.00 0.00 2.69
372 376 7.335924 CCCGAAAAAGAATATCAGTAAGGTTGA 59.664 37.037 0.00 0.00 0.00 3.18
373 377 7.335924 TCCCGAAAAAGAATATCAGTAAGGTTG 59.664 37.037 0.00 0.00 0.00 3.77
374 378 7.399634 TCCCGAAAAAGAATATCAGTAAGGTT 58.600 34.615 0.00 0.00 0.00 3.50
375 379 6.954232 TCCCGAAAAAGAATATCAGTAAGGT 58.046 36.000 0.00 0.00 0.00 3.50
376 380 7.041098 CCATCCCGAAAAAGAATATCAGTAAGG 60.041 40.741 0.00 0.00 0.00 2.69
377 381 7.499232 ACCATCCCGAAAAAGAATATCAGTAAG 59.501 37.037 0.00 0.00 0.00 2.34
378 382 7.282224 CACCATCCCGAAAAAGAATATCAGTAA 59.718 37.037 0.00 0.00 0.00 2.24
379 383 6.765989 CACCATCCCGAAAAAGAATATCAGTA 59.234 38.462 0.00 0.00 0.00 2.74
380 384 5.590259 CACCATCCCGAAAAAGAATATCAGT 59.410 40.000 0.00 0.00 0.00 3.41
381 385 5.590259 ACACCATCCCGAAAAAGAATATCAG 59.410 40.000 0.00 0.00 0.00 2.90
382 386 5.356751 CACACCATCCCGAAAAAGAATATCA 59.643 40.000 0.00 0.00 0.00 2.15
383 387 5.221048 CCACACCATCCCGAAAAAGAATATC 60.221 44.000 0.00 0.00 0.00 1.63
384 388 4.644685 CCACACCATCCCGAAAAAGAATAT 59.355 41.667 0.00 0.00 0.00 1.28
385 389 4.013728 CCACACCATCCCGAAAAAGAATA 58.986 43.478 0.00 0.00 0.00 1.75
386 390 2.825532 CCACACCATCCCGAAAAAGAAT 59.174 45.455 0.00 0.00 0.00 2.40
387 391 2.158593 TCCACACCATCCCGAAAAAGAA 60.159 45.455 0.00 0.00 0.00 2.52
388 392 1.422024 TCCACACCATCCCGAAAAAGA 59.578 47.619 0.00 0.00 0.00 2.52
389 393 1.904287 TCCACACCATCCCGAAAAAG 58.096 50.000 0.00 0.00 0.00 2.27
390 394 2.041081 AGATCCACACCATCCCGAAAAA 59.959 45.455 0.00 0.00 0.00 1.94
391 395 1.633432 AGATCCACACCATCCCGAAAA 59.367 47.619 0.00 0.00 0.00 2.29
392 396 1.285280 AGATCCACACCATCCCGAAA 58.715 50.000 0.00 0.00 0.00 3.46
393 397 1.760613 GTAGATCCACACCATCCCGAA 59.239 52.381 0.00 0.00 0.00 4.30
394 398 1.410004 GTAGATCCACACCATCCCGA 58.590 55.000 0.00 0.00 0.00 5.14
395 399 0.032130 CGTAGATCCACACCATCCCG 59.968 60.000 0.00 0.00 0.00 5.14
396 400 1.120530 ACGTAGATCCACACCATCCC 58.879 55.000 0.00 0.00 0.00 3.85
397 401 1.754803 TCACGTAGATCCACACCATCC 59.245 52.381 0.00 0.00 0.00 3.51
398 402 2.427453 AGTCACGTAGATCCACACCATC 59.573 50.000 0.00 0.00 0.00 3.51
399 403 2.457598 AGTCACGTAGATCCACACCAT 58.542 47.619 0.00 0.00 0.00 3.55
400 404 1.919240 AGTCACGTAGATCCACACCA 58.081 50.000 0.00 0.00 0.00 4.17
401 405 3.442977 ACTAAGTCACGTAGATCCACACC 59.557 47.826 4.61 0.00 0.00 4.16
402 406 4.698583 ACTAAGTCACGTAGATCCACAC 57.301 45.455 4.61 0.00 0.00 3.82
403 407 4.082408 CCAACTAAGTCACGTAGATCCACA 60.082 45.833 4.61 0.00 0.00 4.17
404 408 4.082354 ACCAACTAAGTCACGTAGATCCAC 60.082 45.833 4.61 0.00 0.00 4.02
405 409 4.084287 ACCAACTAAGTCACGTAGATCCA 58.916 43.478 4.61 0.00 0.00 3.41
406 410 4.715527 ACCAACTAAGTCACGTAGATCC 57.284 45.455 4.61 0.00 0.00 3.36
407 411 6.529477 GGTTAACCAACTAAGTCACGTAGATC 59.471 42.308 20.12 0.00 34.88 2.75
408 412 6.393171 GGTTAACCAACTAAGTCACGTAGAT 58.607 40.000 20.12 0.00 34.88 1.98
409 413 5.562696 CGGTTAACCAACTAAGTCACGTAGA 60.563 44.000 24.14 0.00 34.88 2.59
410 414 4.618489 CGGTTAACCAACTAAGTCACGTAG 59.382 45.833 24.14 0.00 34.88 3.51
411 415 4.277174 TCGGTTAACCAACTAAGTCACGTA 59.723 41.667 24.14 0.00 34.88 3.57
412 416 3.068024 TCGGTTAACCAACTAAGTCACGT 59.932 43.478 24.14 0.00 34.88 4.49
413 417 3.641648 TCGGTTAACCAACTAAGTCACG 58.358 45.455 24.14 5.87 34.88 4.35
414 418 4.874970 TCTCGGTTAACCAACTAAGTCAC 58.125 43.478 24.14 0.00 34.88 3.67
415 419 5.733620 ATCTCGGTTAACCAACTAAGTCA 57.266 39.130 24.14 0.00 34.88 3.41
416 420 8.538409 TTAAATCTCGGTTAACCAACTAAGTC 57.462 34.615 24.14 0.00 34.88 3.01
421 425 9.901172 ATTCTATTAAATCTCGGTTAACCAACT 57.099 29.630 24.14 2.98 34.88 3.16
422 426 9.931210 CATTCTATTAAATCTCGGTTAACCAAC 57.069 33.333 24.14 0.00 35.14 3.77
423 427 9.675464 ACATTCTATTAAATCTCGGTTAACCAA 57.325 29.630 24.14 5.10 35.14 3.67
428 432 9.990360 TGCATACATTCTATTAAATCTCGGTTA 57.010 29.630 0.00 0.00 0.00 2.85
429 433 8.774586 GTGCATACATTCTATTAAATCTCGGTT 58.225 33.333 0.00 0.00 0.00 4.44
430 434 8.150945 AGTGCATACATTCTATTAAATCTCGGT 58.849 33.333 0.00 0.00 0.00 4.69
431 435 8.539770 AGTGCATACATTCTATTAAATCTCGG 57.460 34.615 0.00 0.00 0.00 4.63
452 456 1.226491 CATGCGCCTTTGCTAGTGC 60.226 57.895 4.18 0.00 40.20 4.40
453 457 0.376152 CTCATGCGCCTTTGCTAGTG 59.624 55.000 4.18 0.00 35.36 2.74
454 458 1.372087 GCTCATGCGCCTTTGCTAGT 61.372 55.000 4.18 0.00 35.36 2.57
455 459 1.354506 GCTCATGCGCCTTTGCTAG 59.645 57.895 4.18 0.00 35.36 3.42
456 460 3.501396 GCTCATGCGCCTTTGCTA 58.499 55.556 4.18 0.00 35.36 3.49
466 470 0.108138 AGGTGTAGGAACGCTCATGC 60.108 55.000 0.00 0.00 36.33 4.06
467 471 3.735237 ATAGGTGTAGGAACGCTCATG 57.265 47.619 0.00 0.00 36.33 3.07
468 472 4.262079 GCTAATAGGTGTAGGAACGCTCAT 60.262 45.833 0.00 0.00 36.33 2.90
469 473 3.067742 GCTAATAGGTGTAGGAACGCTCA 59.932 47.826 0.00 0.00 36.33 4.26
470 474 3.640592 GCTAATAGGTGTAGGAACGCTC 58.359 50.000 0.00 0.00 36.33 5.03
471 475 2.034305 CGCTAATAGGTGTAGGAACGCT 59.966 50.000 0.00 0.00 36.33 5.07
472 476 2.223665 ACGCTAATAGGTGTAGGAACGC 60.224 50.000 0.00 0.00 35.27 4.84
473 477 3.369385 CACGCTAATAGGTGTAGGAACG 58.631 50.000 0.00 0.00 0.00 3.95
474 478 3.382546 TCCACGCTAATAGGTGTAGGAAC 59.617 47.826 7.69 0.00 32.30 3.62
475 479 3.634504 TCCACGCTAATAGGTGTAGGAA 58.365 45.455 7.69 0.00 32.30 3.36
476 480 3.301794 TCCACGCTAATAGGTGTAGGA 57.698 47.619 7.69 0.00 32.30 2.94
477 481 3.827302 AGATCCACGCTAATAGGTGTAGG 59.173 47.826 7.69 0.00 32.30 3.18
478 482 5.455056 AAGATCCACGCTAATAGGTGTAG 57.545 43.478 7.69 0.00 32.30 2.74
479 483 4.023450 CGAAGATCCACGCTAATAGGTGTA 60.023 45.833 7.69 0.00 32.30 2.90
480 484 3.243434 CGAAGATCCACGCTAATAGGTGT 60.243 47.826 7.69 0.00 32.30 4.16
481 485 3.004419 TCGAAGATCCACGCTAATAGGTG 59.996 47.826 4.59 3.05 0.00 4.00
482 486 3.220110 TCGAAGATCCACGCTAATAGGT 58.780 45.455 4.59 0.00 0.00 3.08
483 487 3.827625 CTCGAAGATCCACGCTAATAGG 58.172 50.000 4.59 0.00 33.89 2.57
484 488 3.238441 GCTCGAAGATCCACGCTAATAG 58.762 50.000 4.59 0.00 33.89 1.73
485 489 2.621526 TGCTCGAAGATCCACGCTAATA 59.378 45.455 4.59 0.00 33.89 0.98
486 490 1.409064 TGCTCGAAGATCCACGCTAAT 59.591 47.619 4.59 0.00 33.89 1.73
487 491 0.815095 TGCTCGAAGATCCACGCTAA 59.185 50.000 4.59 0.00 33.89 3.09
488 492 0.100682 GTGCTCGAAGATCCACGCTA 59.899 55.000 4.59 0.00 33.89 4.26
489 493 1.153745 GTGCTCGAAGATCCACGCT 60.154 57.895 4.59 0.00 33.89 5.07
490 494 0.807667 ATGTGCTCGAAGATCCACGC 60.808 55.000 4.59 0.00 40.14 5.34
491 495 1.203928 GATGTGCTCGAAGATCCACG 58.796 55.000 3.26 3.26 40.14 4.94
502 506 5.991328 TTCCATAATCTTTCGATGTGCTC 57.009 39.130 0.00 0.00 0.00 4.26
503 507 5.297776 CCTTTCCATAATCTTTCGATGTGCT 59.702 40.000 0.00 0.00 0.00 4.40
504 508 5.066505 ACCTTTCCATAATCTTTCGATGTGC 59.933 40.000 0.00 0.00 0.00 4.57
505 509 6.510157 CGACCTTTCCATAATCTTTCGATGTG 60.510 42.308 0.00 0.00 0.00 3.21
506 510 5.523916 CGACCTTTCCATAATCTTTCGATGT 59.476 40.000 0.00 0.00 0.00 3.06
507 511 5.523916 ACGACCTTTCCATAATCTTTCGATG 59.476 40.000 0.00 0.00 0.00 3.84
508 512 5.671493 ACGACCTTTCCATAATCTTTCGAT 58.329 37.500 0.00 0.00 0.00 3.59
509 513 5.080969 ACGACCTTTCCATAATCTTTCGA 57.919 39.130 0.00 0.00 0.00 3.71
510 514 5.796350 AACGACCTTTCCATAATCTTTCG 57.204 39.130 0.00 0.00 0.00 3.46
511 515 7.141100 TCAAACGACCTTTCCATAATCTTTC 57.859 36.000 0.00 0.00 0.00 2.62
512 516 7.519032 TTCAAACGACCTTTCCATAATCTTT 57.481 32.000 0.00 0.00 0.00 2.52
513 517 7.368059 GTTTCAAACGACCTTTCCATAATCTT 58.632 34.615 0.00 0.00 0.00 2.40
514 518 6.072119 GGTTTCAAACGACCTTTCCATAATCT 60.072 38.462 0.00 0.00 33.08 2.40
515 519 6.072119 AGGTTTCAAACGACCTTTCCATAATC 60.072 38.462 0.00 0.00 43.64 1.75
516 520 5.773176 AGGTTTCAAACGACCTTTCCATAAT 59.227 36.000 0.00 0.00 43.64 1.28
517 521 5.134661 AGGTTTCAAACGACCTTTCCATAA 58.865 37.500 0.00 0.00 43.64 1.90
518 522 4.721132 AGGTTTCAAACGACCTTTCCATA 58.279 39.130 0.00 0.00 43.64 2.74
519 523 3.562182 AGGTTTCAAACGACCTTTCCAT 58.438 40.909 0.00 0.00 43.64 3.41
520 524 2.946990 GAGGTTTCAAACGACCTTTCCA 59.053 45.455 0.00 0.00 46.01 3.53
521 525 3.211865 AGAGGTTTCAAACGACCTTTCC 58.788 45.455 0.00 0.00 46.01 3.13
522 526 4.083961 GCTAGAGGTTTCAAACGACCTTTC 60.084 45.833 0.00 0.00 46.01 2.62
523 527 3.813724 GCTAGAGGTTTCAAACGACCTTT 59.186 43.478 0.00 0.00 46.01 3.11
524 528 3.181458 TGCTAGAGGTTTCAAACGACCTT 60.181 43.478 0.00 0.00 46.01 3.50
526 530 2.762745 TGCTAGAGGTTTCAAACGACC 58.237 47.619 0.00 0.00 36.15 4.79
527 531 3.186613 CCTTGCTAGAGGTTTCAAACGAC 59.813 47.826 0.00 0.00 31.89 4.34
528 532 3.399330 CCTTGCTAGAGGTTTCAAACGA 58.601 45.455 0.00 0.00 31.89 3.85
529 533 3.813529 CCTTGCTAGAGGTTTCAAACG 57.186 47.619 0.00 0.00 31.89 3.60
577 581 9.925268 GAGAATTTTAGTAGTTTTGACGTTCAA 57.075 29.630 0.00 0.00 34.03 2.69
578 582 8.553696 GGAGAATTTTAGTAGTTTTGACGTTCA 58.446 33.333 0.00 0.00 0.00 3.18
579 583 8.553696 TGGAGAATTTTAGTAGTTTTGACGTTC 58.446 33.333 0.00 0.00 0.00 3.95
580 584 8.441312 TGGAGAATTTTAGTAGTTTTGACGTT 57.559 30.769 0.00 0.00 0.00 3.99
581 585 8.504005 CATGGAGAATTTTAGTAGTTTTGACGT 58.496 33.333 0.00 0.00 0.00 4.34
582 586 8.504005 ACATGGAGAATTTTAGTAGTTTTGACG 58.496 33.333 0.00 0.00 0.00 4.35
583 587 9.827411 GACATGGAGAATTTTAGTAGTTTTGAC 57.173 33.333 0.00 0.00 0.00 3.18
584 588 9.793259 AGACATGGAGAATTTTAGTAGTTTTGA 57.207 29.630 0.00 0.00 0.00 2.69
645 1027 8.109634 AGTCAAGACCAGTTACATTCCATTTAT 58.890 33.333 0.00 0.00 0.00 1.40
653 1035 5.552870 ACAGAGTCAAGACCAGTTACATT 57.447 39.130 0.00 0.00 0.00 2.71
693 1078 8.469200 CATTCTTGAGCCCATTGATTAACTTTA 58.531 33.333 0.00 0.00 0.00 1.85
721 1106 5.088739 CGGTGAAATTTGCTCTGTGATAAC 58.911 41.667 0.00 0.00 0.00 1.89
722 1107 4.155826 CCGGTGAAATTTGCTCTGTGATAA 59.844 41.667 0.00 0.00 0.00 1.75
723 1108 3.689161 CCGGTGAAATTTGCTCTGTGATA 59.311 43.478 0.00 0.00 0.00 2.15
733 1118 6.531948 TGTGACTTTTAAACCGGTGAAATTTG 59.468 34.615 8.52 8.09 0.00 2.32
735 1120 6.037726 GTGTGACTTTTAAACCGGTGAAATT 58.962 36.000 8.52 0.00 0.00 1.82
747 1132 6.090129 GCTGTTCAACTTGTGTGACTTTTAA 58.910 36.000 0.00 0.00 0.00 1.52
753 1138 2.477863 GGTGCTGTTCAACTTGTGTGAC 60.478 50.000 0.00 0.00 0.00 3.67
754 1139 1.742831 GGTGCTGTTCAACTTGTGTGA 59.257 47.619 0.00 0.00 0.00 3.58
755 1140 1.472082 TGGTGCTGTTCAACTTGTGTG 59.528 47.619 0.00 0.00 32.28 3.82
756 1141 1.832883 TGGTGCTGTTCAACTTGTGT 58.167 45.000 0.00 0.00 32.28 3.72
801 1188 0.038892 GGCTGCTTTGTGTGACATGG 60.039 55.000 0.00 0.00 0.00 3.66
837 1224 0.321671 GCTGTGTAGGTGAGGAGCAA 59.678 55.000 0.00 0.00 0.00 3.91
966 1379 4.020751 CCTGATGGTGCTATGTAGTGCTAT 60.021 45.833 0.00 0.00 0.00 2.97
990 1403 1.753078 CCTCCTCATGGGTCGTCGA 60.753 63.158 0.00 0.00 36.25 4.20
1081 1494 2.418910 CCTCGTCCTGCTCGTCCAT 61.419 63.158 0.00 0.00 0.00 3.41
1176 1592 0.171455 GATTGTCGTCCTGCTCGTCT 59.829 55.000 0.00 0.00 0.00 4.18
1437 1895 2.682136 TCAGGTTCCGGCGGATCA 60.682 61.111 31.59 13.76 0.00 2.92
1791 2249 1.605710 CCAGCGAAATAGATGCAAGGG 59.394 52.381 0.00 0.00 0.00 3.95
1822 2280 0.038166 CCCAGTGGTACCTTGTGCAT 59.962 55.000 14.36 0.00 0.00 3.96
2094 2554 6.072064 AGGTTATACTGCTGACATACCGATAC 60.072 42.308 0.00 0.00 0.00 2.24
2134 2595 1.736681 GCCTGACTTTGTGCTCTGATC 59.263 52.381 0.00 0.00 0.00 2.92
2258 2719 9.485206 GAATAAACGGAATAGCTTGGATTAGTA 57.515 33.333 0.00 0.00 0.00 1.82
2857 3324 7.189693 TGCTTATGATCGGATAAACATCAAC 57.810 36.000 0.00 0.00 30.43 3.18
2862 3329 4.455533 GCCATGCTTATGATCGGATAAACA 59.544 41.667 0.00 0.00 0.00 2.83
2871 3338 4.931601 TCTATTGTCGCCATGCTTATGATC 59.068 41.667 0.00 0.00 0.00 2.92
2968 3436 4.233789 TGGCGTTCATAAGAAAACATTGC 58.766 39.130 0.00 0.00 35.08 3.56
3443 3911 3.503839 GTGGTTGGGGGTGTGGGA 61.504 66.667 0.00 0.00 0.00 4.37
3520 3992 2.234300 TTATTTCCTCCGCGGATCAC 57.766 50.000 31.19 0.00 42.70 3.06
3553 4025 5.758784 GGCAATTACTTACGGAGCTCTATTT 59.241 40.000 14.64 0.00 0.00 1.40
3565 4037 5.582665 CACTGAGAGGAAGGCAATTACTTAC 59.417 44.000 0.00 0.00 29.49 2.34
3600 4072 4.431416 TTCTACCGACCCATATGCAAAT 57.569 40.909 0.00 0.00 0.00 2.32
3629 4101 5.163437 GGTTATGTAGGTCCTAGGTGTTCTG 60.163 48.000 9.08 0.00 0.00 3.02
3649 4121 9.681062 CAAAAATAACTCTCCCTCATAAGGTTA 57.319 33.333 0.00 0.00 41.59 2.85
3697 4169 9.627395 CCTCTTCTACATAATCATTAGGTAACG 57.373 37.037 3.64 0.00 46.39 3.18
3807 4284 8.971073 CCTTAACCATTTCATTTATTCTCCTGT 58.029 33.333 0.00 0.00 0.00 4.00
3808 4285 8.971073 ACCTTAACCATTTCATTTATTCTCCTG 58.029 33.333 0.00 0.00 0.00 3.86
3814 4291 9.197306 GGAGGTACCTTAACCATTTCATTTATT 57.803 33.333 17.53 0.00 42.40 1.40
3962 4439 8.757982 ATACTTTCAAATGGATATTGTCAGCT 57.242 30.769 0.00 0.00 0.00 4.24
4031 4509 7.510675 AGGATTGTCCCAAGAACTTATTCTA 57.489 36.000 0.00 0.00 39.95 2.10
4109 4587 2.993471 GCTGTGAACCATTGGGCCG 61.993 63.158 7.78 0.00 37.90 6.13
4154 4632 6.317857 GTGATGTCAGAAGAAGGTAAATTGC 58.682 40.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.