Multiple sequence alignment - TraesCS6A01G026300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G026300 chr6A 100.000 5965 0 0 1 5965 13062092 13068056 0.000000e+00 11016.0
1 TraesCS6A01G026300 chr6D 93.131 1907 101 15 3104 5006 11772277 11774157 0.000000e+00 2769.0
2 TraesCS6A01G026300 chr6D 94.232 1283 60 8 1789 3071 11771013 11772281 0.000000e+00 1947.0
3 TraesCS6A01G026300 chr6D 88.605 939 55 31 5012 5935 11774212 11775113 0.000000e+00 1094.0
4 TraesCS6A01G026300 chr6D 85.996 1064 75 32 750 1783 11769501 11770520 0.000000e+00 1072.0
5 TraesCS6A01G026300 chr6D 86.111 144 15 5 1031 1173 461365842 461365703 3.720000e-32 150.0
6 TraesCS6A01G026300 chr6D 84.768 151 9 6 876 1013 62082661 62082512 8.060000e-29 139.0
7 TraesCS6A01G026300 chr6D 92.000 100 4 1 10 105 11769134 11769233 2.900000e-28 137.0
8 TraesCS6A01G026300 chr6B 90.032 1886 138 20 3113 4980 21433196 21431343 0.000000e+00 2396.0
9 TraesCS6A01G026300 chr6B 91.947 1279 66 16 1795 3069 21434448 21433203 0.000000e+00 1757.0
10 TraesCS6A01G026300 chr6B 82.524 1339 108 65 487 1796 21435739 21434498 0.000000e+00 1061.0
11 TraesCS6A01G026300 chr6B 84.895 907 60 37 5018 5896 21431265 21430408 0.000000e+00 845.0
12 TraesCS6A01G026300 chr6B 94.318 176 8 2 2 176 21436497 21436323 9.850000e-68 268.0
13 TraesCS6A01G026300 chr6B 100.000 32 0 0 5894 5925 21430396 21430365 6.460000e-05 60.2
14 TraesCS6A01G026300 chr7D 86.177 926 109 17 3003 3920 610695707 610696621 0.000000e+00 983.0
15 TraesCS6A01G026300 chr7D 81.807 841 99 35 2197 3025 610694896 610695694 0.000000e+00 656.0
16 TraesCS6A01G026300 chr7D 84.659 352 49 4 1793 2141 610694436 610694785 4.430000e-91 346.0
17 TraesCS6A01G026300 chr7D 80.505 436 58 21 3964 4396 610696866 610697277 5.810000e-80 309.0
18 TraesCS6A01G026300 chr7D 85.430 151 8 6 876 1013 32521493 32521344 1.730000e-30 145.0
19 TraesCS6A01G026300 chr7D 84.768 151 9 8 876 1013 485665154 485665005 8.060000e-29 139.0
20 TraesCS6A01G026300 chr7D 84.768 151 9 6 876 1013 625867226 625867375 8.060000e-29 139.0
21 TraesCS6A01G026300 chr7B 88.060 804 88 5 3117 3920 698119019 698118224 0.000000e+00 946.0
22 TraesCS6A01G026300 chr7B 87.935 804 89 5 3117 3920 698025182 698024387 0.000000e+00 941.0
23 TraesCS6A01G026300 chr7B 81.633 784 95 32 2197 2975 698026025 698025286 6.610000e-169 604.0
24 TraesCS6A01G026300 chr7B 81.633 784 95 32 2197 2975 698119862 698119123 6.610000e-169 604.0
25 TraesCS6A01G026300 chr7B 84.199 462 55 13 2197 2653 697932427 697931979 3.300000e-117 433.0
26 TraesCS6A01G026300 chr7B 84.000 350 49 6 1796 2141 697932885 697932539 4.460000e-86 329.0
27 TraesCS6A01G026300 chr7B 84.000 350 49 6 1796 2141 698026483 698026137 4.460000e-86 329.0
28 TraesCS6A01G026300 chr7B 84.000 350 49 6 1796 2141 698120320 698119974 4.460000e-86 329.0
29 TraesCS6A01G026300 chr7B 80.594 438 56 22 3964 4396 698024142 698023729 1.610000e-80 311.0
30 TraesCS6A01G026300 chr7B 80.594 438 56 22 3964 4396 698117979 698117566 1.610000e-80 311.0
31 TraesCS6A01G026300 chrUn 87.980 807 83 10 3117 3920 170392144 170391349 0.000000e+00 941.0
32 TraesCS6A01G026300 chrUn 87.871 775 87 4 3146 3920 397053771 397054538 0.000000e+00 904.0
33 TraesCS6A01G026300 chrUn 84.199 462 55 13 2197 2653 170393139 170392691 3.300000e-117 433.0
34 TraesCS6A01G026300 chrUn 84.199 462 55 13 2197 2653 352716939 352717387 3.300000e-117 433.0
35 TraesCS6A01G026300 chrUn 84.199 462 55 13 2197 2653 373215911 373215463 3.300000e-117 433.0
36 TraesCS6A01G026300 chrUn 84.000 350 49 6 1796 2141 170393597 170393251 4.460000e-86 329.0
37 TraesCS6A01G026300 chrUn 83.853 353 50 6 1793 2141 352716478 352716827 4.460000e-86 329.0
38 TraesCS6A01G026300 chrUn 84.000 350 49 6 1796 2141 373216369 373216023 4.460000e-86 329.0
39 TraesCS6A01G026300 chrUn 80.594 438 56 22 3964 4396 170391104 170390691 1.610000e-80 311.0
40 TraesCS6A01G026300 chrUn 80.594 438 56 22 3964 4396 397054783 397055196 1.610000e-80 311.0
41 TraesCS6A01G026300 chrUn 91.667 168 14 0 2808 2975 170392415 170392248 3.590000e-57 233.0
42 TraesCS6A01G026300 chrUn 81.443 97 8 5 5025 5119 170389450 170389362 2.980000e-08 71.3
43 TraesCS6A01G026300 chr3D 77.309 758 154 11 3123 3877 461205621 461204879 1.190000e-116 431.0
44 TraesCS6A01G026300 chr3A 77.105 760 152 15 3123 3877 603796540 603795798 2.570000e-113 420.0
45 TraesCS6A01G026300 chr7A 84.228 298 23 11 862 1153 49454039 49453760 9.850000e-68 268.0
46 TraesCS6A01G026300 chr7A 82.653 98 14 3 5021 5118 32210078 32209984 3.830000e-12 84.2
47 TraesCS6A01G026300 chr7A 82.653 98 14 3 5021 5118 668744574 668744480 3.830000e-12 84.2
48 TraesCS6A01G026300 chr2A 84.228 298 23 11 862 1153 606770078 606770357 9.850000e-68 268.0
49 TraesCS6A01G026300 chr3B 83.681 288 20 14 872 1152 585689385 585689118 4.620000e-61 246.0
50 TraesCS6A01G026300 chr1B 81.757 296 29 9 866 1153 377073120 377072842 2.160000e-54 224.0
51 TraesCS6A01G026300 chr1B 82.653 98 14 3 5021 5118 573513223 573513129 3.830000e-12 84.2
52 TraesCS6A01G026300 chr5D 79.730 296 26 13 862 1153 338880116 338879851 3.670000e-42 183.0
53 TraesCS6A01G026300 chr5D 79.392 296 27 13 862 1153 439085141 439084876 1.710000e-40 178.0
54 TraesCS6A01G026300 chr5D 83.673 98 13 3 5021 5118 504137841 504137935 8.230000e-14 89.8
55 TraesCS6A01G026300 chr5A 83.673 98 13 3 5021 5118 135146465 135146371 8.230000e-14 89.8
56 TraesCS6A01G026300 chr4A 82.653 98 14 3 5021 5118 638475939 638476033 3.830000e-12 84.2
57 TraesCS6A01G026300 chr4A 82.653 98 14 3 5021 5118 731450983 731450889 3.830000e-12 84.2
58 TraesCS6A01G026300 chr4B 86.301 73 7 3 5021 5093 477966111 477966042 6.410000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G026300 chr6A 13062092 13068056 5964 False 11016.000000 11016 100.000000 1 5965 1 chr6A.!!$F1 5964
1 TraesCS6A01G026300 chr6D 11769134 11775113 5979 False 1403.800000 2769 90.792800 10 5935 5 chr6D.!!$F1 5925
2 TraesCS6A01G026300 chr6B 21430365 21436497 6132 True 1064.533333 2396 90.619333 2 5925 6 chr6B.!!$R1 5923
3 TraesCS6A01G026300 chr7D 610694436 610697277 2841 False 573.500000 983 83.287000 1793 4396 4 chr7D.!!$F2 2603
4 TraesCS6A01G026300 chr7B 698117566 698120320 2754 True 547.500000 946 83.571750 1796 4396 4 chr7B.!!$R3 2600
5 TraesCS6A01G026300 chr7B 698023729 698026483 2754 True 546.250000 941 83.540500 1796 4396 4 chr7B.!!$R2 2600
6 TraesCS6A01G026300 chr7B 697931979 697932885 906 True 381.000000 433 84.099500 1796 2653 2 chr7B.!!$R1 857
7 TraesCS6A01G026300 chrUn 397053771 397055196 1425 False 607.500000 904 84.232500 3146 4396 2 chrUn.!!$F2 1250
8 TraesCS6A01G026300 chrUn 170389362 170393597 4235 True 386.383333 941 84.980500 1796 5119 6 chrUn.!!$R1 3323
9 TraesCS6A01G026300 chrUn 352716478 352717387 909 False 381.000000 433 84.026000 1793 2653 2 chrUn.!!$F1 860
10 TraesCS6A01G026300 chrUn 373215463 373216369 906 True 381.000000 433 84.099500 1796 2653 2 chrUn.!!$R2 857
11 TraesCS6A01G026300 chr3D 461204879 461205621 742 True 431.000000 431 77.309000 3123 3877 1 chr3D.!!$R1 754
12 TraesCS6A01G026300 chr3A 603795798 603796540 742 True 420.000000 420 77.105000 3123 3877 1 chr3A.!!$R1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 779 0.179015 TTTTTAGCACCCGCCACTGA 60.179 50.0 0.00 0.0 39.83 3.41 F
1152 1645 0.036294 CCTTCAAGGTCCGTCTTCCC 60.036 60.0 0.00 0.0 0.00 3.97 F
1918 2941 0.616111 AAGTCACCGAGCTCCTGGAT 60.616 55.0 13.94 0.0 0.00 3.41 F
3217 4497 1.034838 AGCACTTGGAACGGTTTGCA 61.035 50.0 14.72 0.0 0.00 4.08 F
4850 7015 0.924823 AGCTGCTGGAGATGGGAAAT 59.075 50.0 0.00 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2085 3108 0.469144 AAGGTTTGGCGGAATGGTGT 60.469 50.000 0.0 0.0 0.00 4.16 R
2289 3369 0.594602 CATCCACTTGTGCCACACAG 59.405 55.000 0.0 1.2 45.39 3.66 R
3694 4975 0.107945 GAAGATTGACAGGCTCCGCT 60.108 55.000 0.0 0.0 0.00 5.52 R
4875 7040 1.073923 GTTCATTGTCAGAGGGTGGGT 59.926 52.381 0.0 0.0 0.00 4.51 R
5801 8079 0.041238 CCTCCTCCTCCACCACTACA 59.959 60.000 0.0 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 59 5.170021 GTTGGCACTCATTTGCATTTCATA 58.830 37.500 0.00 0.00 44.94 2.15
105 110 2.438385 ATCGCGCGTGTTCAACCAAC 62.438 55.000 30.98 0.00 35.28 3.77
117 122 6.312672 CGTGTTCAACCAACTGTATCATATCA 59.687 38.462 0.00 0.00 35.79 2.15
129 134 3.507162 ATCATATCAATCACCGGCCAA 57.493 42.857 0.00 0.00 0.00 4.52
130 135 3.289407 TCATATCAATCACCGGCCAAA 57.711 42.857 0.00 0.00 0.00 3.28
145 150 1.063327 CAAACAAACCGCGAGCACA 59.937 52.632 8.23 0.00 0.00 4.57
161 166 2.030540 AGCACAAACATAGCACAAGCAG 60.031 45.455 0.00 0.00 45.49 4.24
232 414 4.129737 GCACGCGGAGGTAGAGCA 62.130 66.667 12.47 0.00 0.00 4.26
235 417 3.812019 CGCGGAGGTAGAGCACGT 61.812 66.667 0.00 0.00 0.00 4.49
236 418 2.202623 GCGGAGGTAGAGCACGTG 60.203 66.667 12.28 12.28 0.00 4.49
240 422 1.982938 GAGGTAGAGCACGTGGGGT 60.983 63.158 18.88 0.00 0.00 4.95
260 444 1.662044 GCAAAGCTTGGTGGTGGAG 59.338 57.895 0.00 0.00 0.00 3.86
261 445 1.109323 GCAAAGCTTGGTGGTGGAGT 61.109 55.000 0.00 0.00 0.00 3.85
267 451 0.180171 CTTGGTGGTGGAGTGTGTGA 59.820 55.000 0.00 0.00 0.00 3.58
269 453 1.598130 GGTGGTGGAGTGTGTGAGC 60.598 63.158 0.00 0.00 0.00 4.26
271 455 2.421739 GGTGGAGTGTGTGAGCGT 59.578 61.111 0.00 0.00 0.00 5.07
294 479 3.049674 CAGCGGTGTTGGATGCGT 61.050 61.111 6.41 0.00 0.00 5.24
297 482 1.133869 GCGGTGTTGGATGCGTAAC 59.866 57.895 0.00 0.00 0.00 2.50
312 497 1.263217 CGTAACTTTTGAGCGCTGGTT 59.737 47.619 18.48 13.84 0.00 3.67
314 499 0.307760 AACTTTTGAGCGCTGGTTCG 59.692 50.000 18.48 2.35 0.00 3.95
316 501 2.187599 CTTTTGAGCGCTGGTTCGGG 62.188 60.000 18.48 0.00 0.00 5.14
317 502 4.697756 TTGAGCGCTGGTTCGGGG 62.698 66.667 18.48 0.00 0.00 5.73
326 511 4.717313 GGTTCGGGGGCAGTGGTC 62.717 72.222 0.00 0.00 0.00 4.02
346 531 4.247267 TCGTAGACTGATTTTTCACGGT 57.753 40.909 0.00 0.00 0.00 4.83
352 537 7.148705 CGTAGACTGATTTTTCACGGTGAAATA 60.149 37.037 30.44 26.42 44.75 1.40
389 602 1.615424 GGGTCCTTGGCTCCACCTA 60.615 63.158 0.00 0.00 40.22 3.08
395 608 2.257409 CTTGGCTCCACCTACCGCAT 62.257 60.000 0.00 0.00 40.22 4.73
413 626 6.881570 ACCGCATTAAATACTTAGTAGTGGT 58.118 36.000 6.51 6.51 35.78 4.16
430 643 1.173913 GGTGGGTGAAACATAGTGCC 58.826 55.000 0.00 0.00 39.98 5.01
445 658 9.515226 AAACATAGTGCCCGTCATATAAAATAT 57.485 29.630 0.00 0.00 0.00 1.28
453 749 7.279981 TGCCCGTCATATAAAATATATGTCAGC 59.720 37.037 14.03 13.69 34.51 4.26
465 761 3.284449 GTCAGCGGCGGGTGTTTT 61.284 61.111 20.92 0.00 42.25 2.43
466 762 2.517402 TCAGCGGCGGGTGTTTTT 60.517 55.556 20.92 0.00 42.25 1.94
481 777 4.911901 TTTTTAGCACCCGCCACT 57.088 50.000 0.00 0.00 39.83 4.00
482 778 2.336341 TTTTTAGCACCCGCCACTG 58.664 52.632 0.00 0.00 39.83 3.66
483 779 0.179015 TTTTTAGCACCCGCCACTGA 60.179 50.000 0.00 0.00 39.83 3.41
484 780 0.887387 TTTTAGCACCCGCCACTGAC 60.887 55.000 0.00 0.00 39.83 3.51
485 781 2.046009 TTTAGCACCCGCCACTGACA 62.046 55.000 0.00 0.00 39.83 3.58
499 795 5.335127 GCCACTGACATACTTTTAGCATTG 58.665 41.667 0.00 0.00 0.00 2.82
503 799 7.538678 CCACTGACATACTTTTAGCATTGAAAC 59.461 37.037 0.00 0.00 0.00 2.78
508 804 9.937175 GACATACTTTTAGCATTGAAACTATCC 57.063 33.333 0.00 0.00 0.00 2.59
517 813 9.515226 TTAGCATTGAAACTATCCAAAGTTACT 57.485 29.630 0.00 0.00 38.76 2.24
518 814 7.820648 AGCATTGAAACTATCCAAAGTTACTG 58.179 34.615 0.00 0.00 38.76 2.74
519 815 7.448469 AGCATTGAAACTATCCAAAGTTACTGT 59.552 33.333 0.00 0.00 38.76 3.55
520 816 8.726988 GCATTGAAACTATCCAAAGTTACTGTA 58.273 33.333 0.00 0.00 38.76 2.74
555 852 6.638468 GGCAAAGATATTAGCATTGCAAGTAC 59.362 38.462 19.61 2.85 46.12 2.73
561 858 7.926555 AGATATTAGCATTGCAAGTACGTTAGT 59.073 33.333 11.91 0.00 0.00 2.24
573 871 4.825400 AGTACGTTAGTTTGCGAAAACAC 58.175 39.130 21.00 10.22 35.20 3.32
586 884 3.139077 CGAAAACACTGACTAGCCCTTT 58.861 45.455 0.00 0.00 0.00 3.11
587 885 3.186613 CGAAAACACTGACTAGCCCTTTC 59.813 47.826 0.00 0.00 0.00 2.62
728 1204 4.303853 CGAAGGACGCCGAGTATG 57.696 61.111 0.00 0.00 34.51 2.39
729 1205 1.299165 CGAAGGACGCCGAGTATGG 60.299 63.158 0.00 0.00 34.51 2.74
730 1206 1.814527 GAAGGACGCCGAGTATGGT 59.185 57.895 0.00 0.00 0.00 3.55
731 1207 1.027357 GAAGGACGCCGAGTATGGTA 58.973 55.000 0.00 0.00 0.00 3.25
732 1208 1.001597 GAAGGACGCCGAGTATGGTAG 60.002 57.143 0.00 0.00 0.00 3.18
733 1209 1.007618 GGACGCCGAGTATGGTAGC 60.008 63.158 0.00 0.00 0.00 3.58
911 1391 4.748798 CCTCCCCCACCAGCTCCT 62.749 72.222 0.00 0.00 0.00 3.69
948 1428 1.217942 TCTCGATCCATTCAGAGGGGA 59.782 52.381 0.00 0.00 34.70 4.81
1148 1641 2.207924 ACGCCTTCAAGGTCCGTCT 61.208 57.895 5.03 0.00 37.80 4.18
1151 1644 0.673956 GCCTTCAAGGTCCGTCTTCC 60.674 60.000 5.03 0.00 37.80 3.46
1152 1645 0.036294 CCTTCAAGGTCCGTCTTCCC 60.036 60.000 0.00 0.00 0.00 3.97
1153 1646 0.977395 CTTCAAGGTCCGTCTTCCCT 59.023 55.000 0.00 0.00 0.00 4.20
1154 1647 1.348036 CTTCAAGGTCCGTCTTCCCTT 59.652 52.381 0.00 0.00 39.14 3.95
1157 1650 1.199425 AAGGTCCGTCTTCCCTTCCC 61.199 60.000 0.00 0.00 33.27 3.97
1159 1652 2.285144 TCCGTCTTCCCTTCCCCC 60.285 66.667 0.00 0.00 0.00 5.40
1174 1682 2.294078 CCCCCTCACCTCACCTCAC 61.294 68.421 0.00 0.00 0.00 3.51
1182 1690 1.001406 CACCTCACCTCACCTCACTTC 59.999 57.143 0.00 0.00 0.00 3.01
1188 1697 1.896465 ACCTCACCTCACTTCTGTAGC 59.104 52.381 0.00 0.00 0.00 3.58
1195 1704 1.448540 CACTTCTGTAGCCCGGCTG 60.449 63.158 22.95 5.48 40.10 4.85
1202 1711 2.037367 TAGCCCGGCTGTCTGAGT 59.963 61.111 22.95 0.00 40.10 3.41
1204 1713 1.605058 TAGCCCGGCTGTCTGAGTTC 61.605 60.000 22.95 0.00 40.10 3.01
1218 1727 3.519510 TCTGAGTTCAATCCCCCAACTAG 59.480 47.826 0.00 0.00 30.32 2.57
1230 1739 2.643551 CCCAACTAGTAATGGTGCCAG 58.356 52.381 11.78 0.00 34.79 4.85
1235 1744 4.957684 ACTAGTAATGGTGCCAGATACC 57.042 45.455 0.00 0.00 38.71 2.73
1243 1754 2.092323 GGTGCCAGATACCAGGTTTTC 58.908 52.381 0.00 0.00 38.12 2.29
1251 1762 6.342111 CCAGATACCAGGTTTTCTTCTAGAC 58.658 44.000 0.00 0.00 0.00 2.59
1254 1765 6.726764 AGATACCAGGTTTTCTTCTAGACAGT 59.273 38.462 0.00 0.00 0.00 3.55
1255 1766 7.894364 AGATACCAGGTTTTCTTCTAGACAGTA 59.106 37.037 0.00 0.00 0.00 2.74
1256 1767 6.347859 ACCAGGTTTTCTTCTAGACAGTAG 57.652 41.667 0.00 0.00 0.00 2.57
1257 1768 6.075984 ACCAGGTTTTCTTCTAGACAGTAGA 58.924 40.000 0.00 0.00 0.00 2.59
1258 1769 6.726764 ACCAGGTTTTCTTCTAGACAGTAGAT 59.273 38.462 0.00 0.00 29.39 1.98
1259 1770 7.038659 CCAGGTTTTCTTCTAGACAGTAGATG 58.961 42.308 0.00 0.00 29.39 2.90
1261 1772 6.954684 AGGTTTTCTTCTAGACAGTAGATGGA 59.045 38.462 0.00 0.00 29.39 3.41
1262 1773 7.621683 AGGTTTTCTTCTAGACAGTAGATGGAT 59.378 37.037 0.00 0.00 29.39 3.41
1263 1774 7.708752 GGTTTTCTTCTAGACAGTAGATGGATG 59.291 40.741 0.00 0.00 29.39 3.51
1264 1775 6.968263 TTCTTCTAGACAGTAGATGGATGG 57.032 41.667 0.00 0.00 29.39 3.51
1273 1784 5.819991 ACAGTAGATGGATGGTGTTTCATT 58.180 37.500 0.00 0.00 0.00 2.57
1329 1849 9.232082 CAGTCTGAATCTTTTAGATTAGACTCG 57.768 37.037 22.06 17.61 44.41 4.18
1337 1857 4.855715 TTAGATTAGACTCGGCATCCTG 57.144 45.455 0.00 0.00 0.00 3.86
1360 1880 1.472878 GTCTCTGTCGCTGTCACCATA 59.527 52.381 0.00 0.00 0.00 2.74
1381 1901 7.557719 ACCATAATTCAGTTAAGGAATGTCCAG 59.442 37.037 3.70 0.00 39.61 3.86
1382 1902 5.904362 AATTCAGTTAAGGAATGTCCAGC 57.096 39.130 3.70 0.00 39.61 4.85
1383 1903 4.365514 TTCAGTTAAGGAATGTCCAGCA 57.634 40.909 0.00 0.00 39.61 4.41
1384 1904 4.574674 TCAGTTAAGGAATGTCCAGCAT 57.425 40.909 0.00 0.00 39.61 3.79
1385 1905 4.264253 TCAGTTAAGGAATGTCCAGCATG 58.736 43.478 0.00 0.00 39.61 4.06
1386 1906 3.019564 AGTTAAGGAATGTCCAGCATGC 58.980 45.455 10.51 10.51 39.61 4.06
1388 1908 3.530067 GGAATGTCCAGCATGCCC 58.470 61.111 15.66 1.27 45.90 5.36
1389 1909 1.076485 GGAATGTCCAGCATGCCCT 60.076 57.895 15.66 0.00 45.90 5.19
1411 1931 7.143340 CCCTGCATACAACATCAATTCTTATG 58.857 38.462 0.00 0.00 0.00 1.90
1441 1961 4.709397 TCAAGTTGGTTGATTTGTGTTCCT 59.291 37.500 2.34 0.00 40.45 3.36
1448 1968 5.010516 TGGTTGATTTGTGTTCCTTGGTATG 59.989 40.000 0.00 0.00 0.00 2.39
1496 2016 5.791336 ATTCACACTCTTACACTCTGTGA 57.209 39.130 4.61 0.00 39.51 3.58
1519 2039 8.091449 GTGATTTCTTCCTATACATCCTACAGG 58.909 40.741 0.00 0.00 0.00 4.00
1521 2041 5.340891 TCTTCCTATACATCCTACAGGCT 57.659 43.478 0.00 0.00 34.44 4.58
1522 2042 6.464530 TCTTCCTATACATCCTACAGGCTA 57.535 41.667 0.00 0.00 34.44 3.93
1523 2043 6.246919 TCTTCCTATACATCCTACAGGCTAC 58.753 44.000 0.00 0.00 34.44 3.58
1524 2044 5.594199 TCCTATACATCCTACAGGCTACA 57.406 43.478 0.00 0.00 34.44 2.74
1525 2045 5.571285 TCCTATACATCCTACAGGCTACAG 58.429 45.833 0.00 0.00 34.44 2.74
1526 2046 5.074652 TCCTATACATCCTACAGGCTACAGT 59.925 44.000 0.00 0.00 34.44 3.55
1527 2047 5.416326 CCTATACATCCTACAGGCTACAGTC 59.584 48.000 0.00 0.00 34.44 3.51
1532 2052 3.090037 TCCTACAGGCTACAGTCACTTC 58.910 50.000 0.00 0.00 34.44 3.01
1577 2103 2.309458 GTCCCCCAATTTAGTGGTGGTA 59.691 50.000 0.00 0.00 37.46 3.25
1632 2165 6.828273 AGATAGAGATAGATTGGTCTCCATCG 59.172 42.308 5.57 0.00 41.46 3.84
1642 2175 2.037641 TGGTCTCCATCGCAATCATAGG 59.962 50.000 0.00 0.00 0.00 2.57
1701 2234 9.555727 GAATATAATGTTACCTGCCTTGTCTAA 57.444 33.333 0.00 0.00 0.00 2.10
1702 2235 9.914834 AATATAATGTTACCTGCCTTGTCTAAA 57.085 29.630 0.00 0.00 0.00 1.85
1703 2236 7.865706 ATAATGTTACCTGCCTTGTCTAAAG 57.134 36.000 0.00 0.00 0.00 1.85
1704 2237 4.015872 TGTTACCTGCCTTGTCTAAAGG 57.984 45.455 0.00 0.00 40.39 3.11
1710 2243 3.486383 CTGCCTTGTCTAAAGGTTCCAA 58.514 45.455 6.03 0.00 39.60 3.53
1714 2247 5.365314 TGCCTTGTCTAAAGGTTCCAATTTT 59.635 36.000 6.03 0.00 39.60 1.82
1715 2248 5.696270 GCCTTGTCTAAAGGTTCCAATTTTG 59.304 40.000 6.03 0.00 39.60 2.44
1717 2250 7.235409 CCTTGTCTAAAGGTTCCAATTTTGGC 61.235 42.308 4.38 0.00 39.11 4.52
1736 2269 7.429636 TTTGGCACACTATCTGTTTACTTAC 57.570 36.000 0.00 0.00 39.29 2.34
1738 2271 5.929992 TGGCACACTATCTGTTTACTTACAC 59.070 40.000 0.00 0.00 0.00 2.90
1746 2279 9.731819 ACTATCTGTTTACTTACACATCATACG 57.268 33.333 0.00 0.00 0.00 3.06
1754 2287 4.219944 ACTTACACATCATACGGTCACTGT 59.780 41.667 0.00 0.00 0.00 3.55
1782 2738 5.579904 CCATTCTAGATGCAATATCCTGACG 59.420 44.000 0.00 0.00 0.00 4.35
1801 2820 3.735591 ACGCCTTAACTAGCTTGTTTGA 58.264 40.909 18.49 7.57 0.00 2.69
1904 2927 1.918262 AGGAGGATGGCATGAAAGTCA 59.082 47.619 3.81 0.00 0.00 3.41
1918 2941 0.616111 AAGTCACCGAGCTCCTGGAT 60.616 55.000 13.94 0.00 0.00 3.41
2105 3128 1.202952 ACACCATTCCGCCAAACCTTA 60.203 47.619 0.00 0.00 0.00 2.69
2155 3179 2.158769 TGCAACTGAACTCTGACACCAT 60.159 45.455 0.00 0.00 0.00 3.55
2181 3206 3.054878 CAACAAGTTGAATGGCTTCTGC 58.945 45.455 10.54 0.00 42.93 4.26
2221 3301 2.010145 ATTCGTTCCATCAGTGACCG 57.990 50.000 0.00 0.00 0.00 4.79
2289 3369 4.390297 GGAAAGAATCAGTGACAGTACTGC 59.610 45.833 22.90 15.35 45.94 4.40
2483 3568 5.579047 ACAGGTGAATTGGGTGATAATTCA 58.421 37.500 8.57 8.57 46.53 2.57
2588 3673 2.306805 AGGCACATGATGAGGAGTTTCA 59.693 45.455 0.00 0.00 0.00 2.69
2598 3683 7.345422 TGATGAGGAGTTTCATAGAAGAGAG 57.655 40.000 0.00 0.00 37.90 3.20
2699 3936 2.071778 AAGCAAGGCCAAGAAACTCA 57.928 45.000 5.01 0.00 0.00 3.41
2710 3947 5.461526 GCCAAGAAACTCACTGTTATTTCC 58.538 41.667 5.15 0.00 38.03 3.13
3002 4245 3.681897 GCTATTCTCCTCACACACACAAG 59.318 47.826 0.00 0.00 0.00 3.16
3074 4352 8.035394 AGTAATTGCATTCTCGTCTTTCTTCTA 58.965 33.333 0.00 0.00 0.00 2.10
3075 4353 6.900568 ATTGCATTCTCGTCTTTCTTCTAG 57.099 37.500 0.00 0.00 0.00 2.43
3076 4354 5.644977 TGCATTCTCGTCTTTCTTCTAGA 57.355 39.130 0.00 0.00 0.00 2.43
3077 4355 5.645624 TGCATTCTCGTCTTTCTTCTAGAG 58.354 41.667 0.00 0.00 0.00 2.43
3078 4356 5.184096 TGCATTCTCGTCTTTCTTCTAGAGT 59.816 40.000 0.00 0.00 0.00 3.24
3079 4357 6.374613 TGCATTCTCGTCTTTCTTCTAGAGTA 59.625 38.462 0.00 0.00 0.00 2.59
3080 4358 7.094334 TGCATTCTCGTCTTTCTTCTAGAGTAA 60.094 37.037 0.00 0.00 0.00 2.24
3081 4359 7.431084 GCATTCTCGTCTTTCTTCTAGAGTAAG 59.569 40.741 0.00 0.00 34.94 2.34
3082 4360 7.982761 TTCTCGTCTTTCTTCTAGAGTAAGT 57.017 36.000 0.00 0.00 35.12 2.24
3083 4361 9.669887 ATTCTCGTCTTTCTTCTAGAGTAAGTA 57.330 33.333 0.00 0.00 35.12 2.24
3084 4362 9.669887 TTCTCGTCTTTCTTCTAGAGTAAGTAT 57.330 33.333 0.00 0.00 35.12 2.12
3086 4364 7.695820 TCGTCTTTCTTCTAGAGTAAGTATGC 58.304 38.462 0.00 0.00 35.12 3.14
3087 4365 7.336176 TCGTCTTTCTTCTAGAGTAAGTATGCA 59.664 37.037 0.00 0.00 35.12 3.96
3088 4366 7.642194 CGTCTTTCTTCTAGAGTAAGTATGCAG 59.358 40.741 0.00 0.00 35.12 4.41
3089 4367 8.463607 GTCTTTCTTCTAGAGTAAGTATGCAGT 58.536 37.037 0.00 0.00 35.12 4.40
3090 4368 8.462811 TCTTTCTTCTAGAGTAAGTATGCAGTG 58.537 37.037 0.00 0.00 35.12 3.66
3091 4369 7.939784 TTCTTCTAGAGTAAGTATGCAGTGA 57.060 36.000 0.00 0.00 0.00 3.41
3092 4370 7.939784 TCTTCTAGAGTAAGTATGCAGTGAA 57.060 36.000 0.00 0.00 0.00 3.18
3093 4371 8.349568 TCTTCTAGAGTAAGTATGCAGTGAAA 57.650 34.615 0.00 0.00 0.00 2.69
3095 4373 9.243637 CTTCTAGAGTAAGTATGCAGTGAAATC 57.756 37.037 0.00 0.00 0.00 2.17
3096 4374 8.293699 TCTAGAGTAAGTATGCAGTGAAATCA 57.706 34.615 0.00 0.00 0.00 2.57
3098 4376 9.539825 CTAGAGTAAGTATGCAGTGAAATCATT 57.460 33.333 0.00 0.00 0.00 2.57
3160 4440 3.371380 GGCTGATGAAGAAACATCCCTCT 60.371 47.826 0.00 0.00 43.96 3.69
3217 4497 1.034838 AGCACTTGGAACGGTTTGCA 61.035 50.000 14.72 0.00 0.00 4.08
3370 4650 3.450115 GTAGACCGGAGCGTGGCT 61.450 66.667 9.46 0.00 43.88 4.75
3407 4688 2.457743 TTTTAGCTGCCTTCGCCGGA 62.458 55.000 5.05 0.00 0.00 5.14
3440 4721 3.129287 GGAGCAGTTTTATGACCCACATG 59.871 47.826 0.00 0.00 39.77 3.21
3508 4789 1.333619 GCAAACTCGTTGAGCTCCAAA 59.666 47.619 12.15 0.00 39.87 3.28
3511 4792 1.048601 ACTCGTTGAGCTCCAAAGGA 58.951 50.000 12.15 9.84 36.36 3.36
3663 4944 2.805099 GCAGTGAGAAGTCTGTTGGAAG 59.195 50.000 0.00 0.00 34.57 3.46
3694 4975 1.670590 CCCGCTGCAAATTGGGAAA 59.329 52.632 3.72 0.00 44.88 3.13
3697 4978 1.346378 CGCTGCAAATTGGGAAAGCG 61.346 55.000 0.00 0.12 46.09 4.68
3897 5179 7.554476 AGAGGTTTGCATCTTAACTAATCCTTC 59.446 37.037 0.00 0.00 30.81 3.46
3935 5219 6.971527 ATTTCACAATTGGTTATGTGCATG 57.028 33.333 10.83 0.00 45.08 4.06
3943 5227 4.468765 TGGTTATGTGCATGGAAAATGG 57.531 40.909 0.00 0.00 0.00 3.16
4004 5292 3.059884 CAAGTCACGACAGTTATGTGCT 58.940 45.455 0.00 0.00 40.68 4.40
4096 5620 8.863872 AGTAAAATGCTAATTCTGTACTTGGT 57.136 30.769 0.00 0.00 0.00 3.67
4106 5634 3.296854 TCTGTACTTGGTCTGACACTGT 58.703 45.455 10.38 7.03 0.00 3.55
4182 5712 2.175202 AGAAGCAGAGGAAGTCGATGT 58.825 47.619 0.00 0.00 0.00 3.06
4238 5768 6.055588 ACTGACGAAGAAAAGGAAATTCAGA 58.944 36.000 0.00 0.00 33.65 3.27
4367 5897 3.343617 TGCTTCTGGGAAAATCTTACGG 58.656 45.455 0.00 0.00 0.00 4.02
4372 5902 3.263425 TCTGGGAAAATCTTACGGAAGCT 59.737 43.478 1.22 0.00 32.21 3.74
4373 5903 3.343617 TGGGAAAATCTTACGGAAGCTG 58.656 45.455 1.22 0.00 32.21 4.24
4374 5904 3.244770 TGGGAAAATCTTACGGAAGCTGT 60.245 43.478 1.22 0.00 32.21 4.40
4400 5931 8.348983 TGCTGCTACGATAATAAGAAAACTAC 57.651 34.615 0.00 0.00 0.00 2.73
4402 5933 8.267367 GCTGCTACGATAATAAGAAAACTACAC 58.733 37.037 0.00 0.00 0.00 2.90
4438 6051 5.294356 TGTAGTTGTTTGTGCTAGTGGTAG 58.706 41.667 0.00 0.00 0.00 3.18
4440 6068 4.377897 AGTTGTTTGTGCTAGTGGTAGAC 58.622 43.478 0.00 0.00 0.00 2.59
4508 6138 1.541147 TGCTGTGCTGCAGTTTTATCC 59.459 47.619 16.64 0.00 46.64 2.59
4509 6139 1.815003 GCTGTGCTGCAGTTTTATCCT 59.185 47.619 16.64 0.00 46.64 3.24
4525 6160 7.230510 AGTTTTATCCTCATAACAACTGTTGCA 59.769 33.333 19.82 8.97 38.90 4.08
4547 6182 4.026744 AGTGCTGCATTCTACCTAGAGAA 58.973 43.478 5.27 0.00 39.71 2.87
4709 6349 2.579860 AGACCTGGCCATGAGAGAAAAT 59.420 45.455 15.66 0.00 0.00 1.82
4721 6361 3.190874 GAGAGAAAATGGCTACTGGTCG 58.809 50.000 0.00 0.00 0.00 4.79
4794 6437 2.411904 GAGGCGGTGAAGATGATGATC 58.588 52.381 0.00 0.00 0.00 2.92
4801 6966 4.573607 CGGTGAAGATGATGATCACAATGT 59.426 41.667 0.00 0.00 44.05 2.71
4850 7015 0.924823 AGCTGCTGGAGATGGGAAAT 59.075 50.000 0.00 0.00 0.00 2.17
4852 7017 1.688772 CTGCTGGAGATGGGAAATGG 58.311 55.000 0.00 0.00 0.00 3.16
4875 7040 3.206957 GCGCAGAGATGCCATGCA 61.207 61.111 0.30 0.00 44.86 3.96
4988 7153 3.803082 CGCCGCCATGTCAGGTTG 61.803 66.667 0.00 0.00 0.00 3.77
4989 7154 4.120331 GCCGCCATGTCAGGTTGC 62.120 66.667 0.00 0.00 0.00 4.17
5006 7171 3.780925 GCAATCAGCAGTGTGGTTC 57.219 52.632 0.00 0.00 44.79 3.62
5008 7173 2.426522 GCAATCAGCAGTGTGGTTCTA 58.573 47.619 0.00 0.00 44.79 2.10
5010 7175 2.393271 ATCAGCAGTGTGGTTCTAGC 57.607 50.000 0.00 0.00 0.00 3.42
5011 7176 1.342074 TCAGCAGTGTGGTTCTAGCT 58.658 50.000 0.00 0.00 0.00 3.32
5012 7177 2.525368 TCAGCAGTGTGGTTCTAGCTA 58.475 47.619 0.00 0.00 0.00 3.32
5014 7179 3.131223 TCAGCAGTGTGGTTCTAGCTATC 59.869 47.826 0.00 0.00 0.00 2.08
5015 7180 3.131933 CAGCAGTGTGGTTCTAGCTATCT 59.868 47.826 0.00 0.00 0.00 1.98
5016 7181 4.339530 CAGCAGTGTGGTTCTAGCTATCTA 59.660 45.833 0.00 0.00 0.00 1.98
5019 7184 5.531659 GCAGTGTGGTTCTAGCTATCTACTA 59.468 44.000 0.00 0.00 0.00 1.82
5037 7285 6.812998 TCTACTACTAGCTGTGTTGTTGTTT 58.187 36.000 12.09 0.00 0.00 2.83
5056 7304 7.757624 TGTTGTTTTTCTTGTTGTAAGATGGTC 59.242 33.333 0.00 0.00 0.00 4.02
5057 7305 7.397892 TGTTTTTCTTGTTGTAAGATGGTCA 57.602 32.000 0.00 0.00 0.00 4.02
5058 7306 8.006298 TGTTTTTCTTGTTGTAAGATGGTCAT 57.994 30.769 0.00 0.00 0.00 3.06
5060 7308 6.573664 TTTCTTGTTGTAAGATGGTCATGG 57.426 37.500 0.00 0.00 0.00 3.66
5061 7309 5.241403 TCTTGTTGTAAGATGGTCATGGT 57.759 39.130 0.00 0.00 0.00 3.55
5062 7310 6.367374 TCTTGTTGTAAGATGGTCATGGTA 57.633 37.500 0.00 0.00 0.00 3.25
5063 7311 6.406370 TCTTGTTGTAAGATGGTCATGGTAG 58.594 40.000 0.00 0.00 0.00 3.18
5064 7312 4.513442 TGTTGTAAGATGGTCATGGTAGC 58.487 43.478 0.00 0.00 0.00 3.58
5065 7313 4.019771 TGTTGTAAGATGGTCATGGTAGCA 60.020 41.667 0.00 0.00 0.00 3.49
5066 7314 5.126067 GTTGTAAGATGGTCATGGTAGCAT 58.874 41.667 0.40 0.40 40.17 3.79
5106 7354 9.760660 CTATGTTGTTGTATTAGTTTCTGAAGC 57.239 33.333 0.00 0.00 0.00 3.86
5128 7380 2.618427 ATCAGGGGAGGGGAGCAGAG 62.618 65.000 0.00 0.00 0.00 3.35
5216 7482 8.507249 AGTAGTAGCAAAATGAACATGAAGAAC 58.493 33.333 0.00 0.00 0.00 3.01
5253 7525 6.593268 TTGATTGATTCATGGCAGAAGAAA 57.407 33.333 0.00 0.00 33.34 2.52
5280 7552 3.570125 TGGATACTTGCTAGATCGACTGG 59.430 47.826 1.04 0.00 37.61 4.00
5287 7559 0.597118 CTAGATCGACTGGCTGCAGC 60.597 60.000 30.88 30.88 41.14 5.25
5290 7562 1.975363 GATCGACTGGCTGCAGCAAC 61.975 60.000 37.63 22.97 44.36 4.17
5293 7565 0.742281 CGACTGGCTGCAGCAACTAT 60.742 55.000 37.63 19.15 44.36 2.12
5294 7566 1.471501 CGACTGGCTGCAGCAACTATA 60.472 52.381 37.63 16.12 44.36 1.31
5295 7567 2.804572 CGACTGGCTGCAGCAACTATAT 60.805 50.000 37.63 16.64 44.36 0.86
5296 7568 3.209410 GACTGGCTGCAGCAACTATATT 58.791 45.455 37.63 13.94 44.36 1.28
5297 7569 4.380531 GACTGGCTGCAGCAACTATATTA 58.619 43.478 37.63 12.20 44.36 0.98
5298 7570 4.130118 ACTGGCTGCAGCAACTATATTAC 58.870 43.478 37.63 17.89 44.36 1.89
5299 7571 3.130633 TGGCTGCAGCAACTATATTACG 58.869 45.455 37.63 0.00 44.36 3.18
5300 7572 3.131396 GGCTGCAGCAACTATATTACGT 58.869 45.455 37.63 0.00 44.36 3.57
5301 7573 4.202172 TGGCTGCAGCAACTATATTACGTA 60.202 41.667 37.63 0.84 44.36 3.57
5302 7574 4.150098 GGCTGCAGCAACTATATTACGTAC 59.850 45.833 37.63 12.50 44.36 3.67
5303 7575 4.982916 GCTGCAGCAACTATATTACGTACT 59.017 41.667 33.36 0.00 41.59 2.73
5304 7576 5.107837 GCTGCAGCAACTATATTACGTACTG 60.108 44.000 33.36 0.00 41.59 2.74
5305 7577 6.139048 TGCAGCAACTATATTACGTACTGA 57.861 37.500 0.00 0.00 0.00 3.41
5323 7595 4.312443 ACTGAAAAATGATGCAGCTTTGG 58.688 39.130 2.53 0.00 31.74 3.28
5324 7596 3.068560 TGAAAAATGATGCAGCTTTGGC 58.931 40.909 2.53 0.00 39.06 4.52
5332 7604 0.327924 TGCAGCTTTGGCTAAGGCTA 59.672 50.000 18.88 2.10 46.16 3.93
5333 7605 1.271871 TGCAGCTTTGGCTAAGGCTAA 60.272 47.619 18.88 8.11 46.16 3.09
5334 7606 2.027385 GCAGCTTTGGCTAAGGCTAAT 58.973 47.619 18.88 0.00 46.16 1.73
5345 7617 2.215942 AAGGCTAATTGGTGGTGGTC 57.784 50.000 0.00 0.00 0.00 4.02
5593 7865 2.685380 CTCCTCCACCGCCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
5611 7886 1.194781 TTCTTCTCGCCTTGCTCCCT 61.195 55.000 0.00 0.00 0.00 4.20
5612 7887 1.153469 CTTCTCGCCTTGCTCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
5613 7888 1.610673 TTCTCGCCTTGCTCCCTCT 60.611 57.895 0.00 0.00 0.00 3.69
5791 8069 2.997315 TGTGTGGAGGAGGGAGCG 60.997 66.667 0.00 0.00 0.00 5.03
5822 8103 2.856039 TAGTGGTGGAGGAGGAGGCG 62.856 65.000 0.00 0.00 0.00 5.52
5823 8104 4.316823 TGGTGGAGGAGGAGGCGT 62.317 66.667 0.00 0.00 0.00 5.68
5853 8134 1.704007 GGATGAGCAAGAGGGGGAGG 61.704 65.000 0.00 0.00 0.00 4.30
5854 8135 2.336484 GATGAGCAAGAGGGGGAGGC 62.336 65.000 0.00 0.00 0.00 4.70
5855 8136 3.803162 GAGCAAGAGGGGGAGGCC 61.803 72.222 0.00 0.00 0.00 5.19
5931 8226 1.673665 GCTGGGTGGACAAGCAGAG 60.674 63.158 0.00 0.00 0.00 3.35
5935 8230 3.426568 GTGGACAAGCAGAGCGGC 61.427 66.667 0.00 0.00 0.00 6.53
5936 8231 4.704833 TGGACAAGCAGAGCGGCC 62.705 66.667 0.00 0.00 0.00 6.13
5937 8232 4.704833 GGACAAGCAGAGCGGCCA 62.705 66.667 2.24 0.00 0.00 5.36
5938 8233 2.669569 GACAAGCAGAGCGGCCAA 60.670 61.111 2.24 0.00 0.00 4.52
5939 8234 2.970974 GACAAGCAGAGCGGCCAAC 61.971 63.158 2.24 0.00 0.00 3.77
5940 8235 2.979676 CAAGCAGAGCGGCCAACA 60.980 61.111 2.24 0.00 0.00 3.33
5941 8236 2.980233 AAGCAGAGCGGCCAACAC 60.980 61.111 2.24 0.00 0.00 3.32
5944 8239 2.594303 CAGAGCGGCCAACACCAA 60.594 61.111 2.24 0.00 0.00 3.67
5945 8240 2.594592 AGAGCGGCCAACACCAAC 60.595 61.111 2.24 0.00 0.00 3.77
5946 8241 4.025401 GAGCGGCCAACACCAACG 62.025 66.667 2.24 0.00 0.00 4.10
5949 8244 3.353836 CGGCCAACACCAACGGAG 61.354 66.667 2.24 0.00 0.00 4.63
5950 8245 3.670377 GGCCAACACCAACGGAGC 61.670 66.667 0.00 0.00 0.00 4.70
5951 8246 4.025401 GCCAACACCAACGGAGCG 62.025 66.667 0.00 0.00 0.00 5.03
5952 8247 4.025401 CCAACACCAACGGAGCGC 62.025 66.667 0.00 0.00 0.00 5.92
5953 8248 4.368808 CAACACCAACGGAGCGCG 62.369 66.667 0.00 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.181486 TGCAAATGAGTGCCAACGTTTTA 60.181 39.130 0.00 0.00 44.26 1.52
54 59 4.039032 CGCGGTTTGTTGTTGTCTTTTAT 58.961 39.130 0.00 0.00 0.00 1.40
105 110 3.935203 GGCCGGTGATTGATATGATACAG 59.065 47.826 1.90 0.00 0.00 2.74
117 122 0.391228 GGTTTGTTTGGCCGGTGATT 59.609 50.000 1.90 0.00 0.00 2.57
129 134 0.524604 GTTTGTGCTCGCGGTTTGTT 60.525 50.000 6.13 0.00 0.00 2.83
130 135 1.063488 GTTTGTGCTCGCGGTTTGT 59.937 52.632 6.13 0.00 0.00 2.83
145 150 5.009911 TCAATTCACTGCTTGTGCTATGTTT 59.990 36.000 5.71 0.00 45.81 2.83
161 166 3.064545 CGCCTCCTCTGATTTCAATTCAC 59.935 47.826 0.00 0.00 0.00 3.18
232 414 3.731766 AAGCTTTGCCACCCCACGT 62.732 57.895 0.00 0.00 0.00 4.49
235 417 2.523902 CCAAGCTTTGCCACCCCA 60.524 61.111 0.00 0.00 0.00 4.96
236 418 2.524148 ACCAAGCTTTGCCACCCC 60.524 61.111 0.00 0.00 0.00 4.95
240 422 2.132996 CCACCACCAAGCTTTGCCA 61.133 57.895 0.00 0.00 0.00 4.92
241 423 1.809567 CTCCACCACCAAGCTTTGCC 61.810 60.000 0.00 0.00 0.00 4.52
243 425 0.670162 CACTCCACCACCAAGCTTTG 59.330 55.000 0.00 0.00 0.00 2.77
294 479 1.529438 CGAACCAGCGCTCAAAAGTTA 59.471 47.619 7.13 0.00 0.00 2.24
297 482 1.207593 CCGAACCAGCGCTCAAAAG 59.792 57.895 7.13 0.00 0.00 2.27
312 497 4.682334 TACGACCACTGCCCCCGA 62.682 66.667 0.00 0.00 0.00 5.14
314 499 2.682494 TCTACGACCACTGCCCCC 60.682 66.667 0.00 0.00 0.00 5.40
316 501 1.215647 CAGTCTACGACCACTGCCC 59.784 63.158 0.00 0.00 33.96 5.36
317 502 0.818296 ATCAGTCTACGACCACTGCC 59.182 55.000 0.00 0.00 40.01 4.85
321 506 4.143389 CGTGAAAAATCAGTCTACGACCAC 60.143 45.833 0.00 0.00 32.18 4.16
322 507 3.985279 CGTGAAAAATCAGTCTACGACCA 59.015 43.478 0.00 0.00 32.18 4.02
326 511 3.985279 TCACCGTGAAAAATCAGTCTACG 59.015 43.478 0.00 0.00 0.00 3.51
346 531 5.098893 CCGCCGAAAATTTGTGATATTTCA 58.901 37.500 0.00 0.00 32.64 2.69
352 537 0.455972 CGCCGCCGAAAATTTGTGAT 60.456 50.000 0.00 0.00 36.29 3.06
357 542 2.985117 GACCCGCCGCCGAAAATTT 61.985 57.895 0.00 0.00 36.29 1.82
383 596 6.285990 ACTAAGTATTTAATGCGGTAGGTGG 58.714 40.000 9.89 0.00 0.00 4.61
389 602 6.759827 CACCACTACTAAGTATTTAATGCGGT 59.240 38.462 0.00 0.00 33.48 5.68
395 608 7.795534 TCACCCACCACTACTAAGTATTTAA 57.204 36.000 0.00 0.00 33.48 1.52
413 626 0.322098 CGGGCACTATGTTTCACCCA 60.322 55.000 0.00 0.00 37.16 4.51
430 643 7.516785 GCCGCTGACATATATTTTATATGACGG 60.517 40.741 17.26 19.87 38.73 4.79
445 658 2.457743 AAACACCCGCCGCTGACATA 62.458 55.000 0.00 0.00 0.00 2.29
446 659 3.842925 AAACACCCGCCGCTGACAT 62.843 57.895 0.00 0.00 0.00 3.06
447 660 4.555709 AAACACCCGCCGCTGACA 62.556 61.111 0.00 0.00 0.00 3.58
465 761 0.887387 GTCAGTGGCGGGTGCTAAAA 60.887 55.000 0.00 0.00 42.25 1.52
466 762 1.302192 GTCAGTGGCGGGTGCTAAA 60.302 57.895 0.00 0.00 42.25 1.85
468 764 0.973496 TATGTCAGTGGCGGGTGCTA 60.973 55.000 0.00 0.00 42.25 3.49
469 765 2.290287 TATGTCAGTGGCGGGTGCT 61.290 57.895 0.00 0.00 42.25 4.40
470 766 2.106683 GTATGTCAGTGGCGGGTGC 61.107 63.158 0.00 0.00 41.71 5.01
471 767 0.036388 AAGTATGTCAGTGGCGGGTG 60.036 55.000 0.00 0.00 0.00 4.61
472 768 0.690762 AAAGTATGTCAGTGGCGGGT 59.309 50.000 0.00 0.00 0.00 5.28
473 769 1.821216 AAAAGTATGTCAGTGGCGGG 58.179 50.000 0.00 0.00 0.00 6.13
474 770 2.351726 GCTAAAAGTATGTCAGTGGCGG 59.648 50.000 0.00 0.00 0.00 6.13
475 771 3.000041 TGCTAAAAGTATGTCAGTGGCG 59.000 45.455 0.00 0.00 0.00 5.69
476 772 5.123820 TCAATGCTAAAAGTATGTCAGTGGC 59.876 40.000 0.00 0.00 0.00 5.01
477 773 6.741992 TCAATGCTAAAAGTATGTCAGTGG 57.258 37.500 0.00 0.00 0.00 4.00
478 774 8.292448 AGTTTCAATGCTAAAAGTATGTCAGTG 58.708 33.333 0.00 0.00 0.00 3.66
479 775 8.396272 AGTTTCAATGCTAAAAGTATGTCAGT 57.604 30.769 0.00 0.00 0.00 3.41
482 778 9.937175 GGATAGTTTCAATGCTAAAAGTATGTC 57.063 33.333 0.00 0.00 33.33 3.06
483 779 9.461312 TGGATAGTTTCAATGCTAAAAGTATGT 57.539 29.630 0.00 0.00 33.33 2.29
499 795 8.611654 TTGGTACAGTAACTTTGGATAGTTTC 57.388 34.615 0.00 0.00 42.39 2.78
537 833 8.433421 AACTAACGTACTTGCAATGCTAATAT 57.567 30.769 6.82 0.00 0.00 1.28
539 835 6.737254 AACTAACGTACTTGCAATGCTAAT 57.263 33.333 6.82 0.00 0.00 1.73
541 837 5.615984 GCAAACTAACGTACTTGCAATGCTA 60.616 40.000 6.82 0.00 42.91 3.49
555 852 3.717404 GTCAGTGTTTTCGCAAACTAACG 59.283 43.478 11.83 0.00 42.61 3.18
561 858 2.289547 GGCTAGTCAGTGTTTTCGCAAA 59.710 45.455 0.00 0.00 0.00 3.68
586 884 5.939764 ATACTGTCAAGACTTGCCATAGA 57.060 39.130 10.50 0.00 0.00 1.98
587 885 5.986135 GGTATACTGTCAAGACTTGCCATAG 59.014 44.000 10.50 4.91 0.00 2.23
659 957 7.941919 AGTTCCTTCACCTTGTTTCTTTATTC 58.058 34.615 0.00 0.00 0.00 1.75
666 964 4.448060 CGTCTAGTTCCTTCACCTTGTTTC 59.552 45.833 0.00 0.00 0.00 2.78
670 968 3.005472 TGTCGTCTAGTTCCTTCACCTTG 59.995 47.826 0.00 0.00 0.00 3.61
726 1202 2.584608 GCCCACACTCGCTACCAT 59.415 61.111 0.00 0.00 0.00 3.55
727 1203 4.063967 CGCCCACACTCGCTACCA 62.064 66.667 0.00 0.00 0.00 3.25
728 1204 4.065281 ACGCCCACACTCGCTACC 62.065 66.667 0.00 0.00 0.00 3.18
729 1205 2.809601 CACGCCCACACTCGCTAC 60.810 66.667 0.00 0.00 0.00 3.58
730 1206 4.063967 CCACGCCCACACTCGCTA 62.064 66.667 0.00 0.00 0.00 4.26
904 1381 3.106552 CGAGTCGAGGAGGAGCTG 58.893 66.667 6.73 0.00 0.00 4.24
911 1391 4.779966 AGAGCGGCGAGTCGAGGA 62.780 66.667 18.61 0.00 0.00 3.71
948 1428 1.439644 GGCGAGCGAAGGAGAGAAT 59.560 57.895 0.00 0.00 0.00 2.40
1027 1520 3.568686 GGCGACGGCAATGTACAA 58.431 55.556 17.49 0.00 42.47 2.41
1062 1555 2.813908 GTGTACCGGAAGCCGCTG 60.814 66.667 9.46 0.00 46.86 5.18
1157 1650 2.294078 GGTGAGGTGAGGTGAGGGG 61.294 68.421 0.00 0.00 0.00 4.79
1159 1652 0.542938 TGAGGTGAGGTGAGGTGAGG 60.543 60.000 0.00 0.00 0.00 3.86
1161 1654 0.188587 AGTGAGGTGAGGTGAGGTGA 59.811 55.000 0.00 0.00 0.00 4.02
1162 1655 1.001406 GAAGTGAGGTGAGGTGAGGTG 59.999 57.143 0.00 0.00 0.00 4.00
1163 1656 1.133009 AGAAGTGAGGTGAGGTGAGGT 60.133 52.381 0.00 0.00 0.00 3.85
1165 1658 1.967066 ACAGAAGTGAGGTGAGGTGAG 59.033 52.381 0.00 0.00 0.00 3.51
1167 1660 2.353208 GCTACAGAAGTGAGGTGAGGTG 60.353 54.545 0.00 0.00 0.00 4.00
1168 1661 1.896465 GCTACAGAAGTGAGGTGAGGT 59.104 52.381 0.00 0.00 0.00 3.85
1174 1682 1.517832 CCGGGCTACAGAAGTGAGG 59.482 63.158 0.00 0.00 0.00 3.86
1182 1690 2.185350 CAGACAGCCGGGCTACAG 59.815 66.667 23.37 12.47 36.40 2.74
1188 1697 0.036010 ATTGAACTCAGACAGCCGGG 60.036 55.000 2.18 0.00 0.00 5.73
1195 1704 2.040412 AGTTGGGGGATTGAACTCAGAC 59.960 50.000 0.00 0.00 0.00 3.51
1202 1711 4.542525 ACCATTACTAGTTGGGGGATTGAA 59.457 41.667 16.32 0.00 37.32 2.69
1204 1713 4.207165 CACCATTACTAGTTGGGGGATTG 58.793 47.826 16.32 3.39 37.32 2.67
1218 1727 2.172717 ACCTGGTATCTGGCACCATTAC 59.827 50.000 0.00 0.00 44.89 1.89
1230 1739 6.937392 ACTGTCTAGAAGAAAACCTGGTATC 58.063 40.000 0.00 1.77 0.00 2.24
1235 1744 7.038659 CCATCTACTGTCTAGAAGAAAACCTG 58.961 42.308 0.00 0.00 0.00 4.00
1237 1746 7.171630 TCCATCTACTGTCTAGAAGAAAACC 57.828 40.000 0.00 0.00 0.00 3.27
1243 1754 5.596361 ACACCATCCATCTACTGTCTAGAAG 59.404 44.000 0.00 0.00 0.00 2.85
1251 1762 7.173907 GGATAATGAAACACCATCCATCTACTG 59.826 40.741 0.00 0.00 36.09 2.74
1254 1765 7.147320 ACTGGATAATGAAACACCATCCATCTA 60.147 37.037 13.03 0.00 43.12 1.98
1255 1766 6.017211 TGGATAATGAAACACCATCCATCT 57.983 37.500 10.23 0.00 40.11 2.90
1256 1767 5.829924 ACTGGATAATGAAACACCATCCATC 59.170 40.000 13.03 0.00 43.12 3.51
1257 1768 5.769835 ACTGGATAATGAAACACCATCCAT 58.230 37.500 13.03 0.00 43.12 3.41
1258 1769 5.191727 ACTGGATAATGAAACACCATCCA 57.808 39.130 12.42 12.42 42.16 3.41
1259 1770 6.530019 AAACTGGATAATGAAACACCATCC 57.470 37.500 0.00 0.00 36.50 3.51
1261 1772 8.593945 ATGTAAACTGGATAATGAAACACCAT 57.406 30.769 0.00 0.00 0.00 3.55
1262 1773 8.415950 AATGTAAACTGGATAATGAAACACCA 57.584 30.769 0.00 0.00 0.00 4.17
1263 1774 9.705290 AAAATGTAAACTGGATAATGAAACACC 57.295 29.630 0.00 0.00 0.00 4.16
1337 1857 2.505118 GACAGCGACAGAGACGGC 60.505 66.667 0.00 0.00 0.00 5.68
1360 1880 5.324409 TGCTGGACATTCCTTAACTGAATT 58.676 37.500 0.00 0.00 37.46 2.17
1384 1904 2.212812 TTGATGTTGTATGCAGGGCA 57.787 45.000 0.00 0.00 44.86 5.36
1385 1905 3.382546 AGAATTGATGTTGTATGCAGGGC 59.617 43.478 0.00 0.00 0.00 5.19
1386 1906 5.587388 AAGAATTGATGTTGTATGCAGGG 57.413 39.130 0.00 0.00 0.00 4.45
1387 1907 7.709947 ACATAAGAATTGATGTTGTATGCAGG 58.290 34.615 0.00 0.00 32.27 4.85
1388 1908 8.618677 AGACATAAGAATTGATGTTGTATGCAG 58.381 33.333 0.00 0.00 36.42 4.41
1389 1909 8.400186 CAGACATAAGAATTGATGTTGTATGCA 58.600 33.333 0.00 0.00 36.42 3.96
1394 1914 9.234827 TGATTCAGACATAAGAATTGATGTTGT 57.765 29.630 0.00 0.00 36.42 3.32
1401 1921 8.517878 ACCAACTTGATTCAGACATAAGAATTG 58.482 33.333 0.00 0.00 34.79 2.32
1472 1992 6.582636 TCACAGAGTGTAAGAGTGTGAATTT 58.417 36.000 1.09 0.00 43.39 1.82
1481 2001 6.696411 AGGAAGAAATCACAGAGTGTAAGAG 58.304 40.000 0.00 0.00 34.79 2.85
1496 2016 6.789959 AGCCTGTAGGATGTATAGGAAGAAAT 59.210 38.462 1.17 0.00 37.39 2.17
1523 2043 6.151985 AGGAGAACATACTACAGAAGTGACTG 59.848 42.308 0.00 0.00 39.39 3.51
1524 2044 6.151985 CAGGAGAACATACTACAGAAGTGACT 59.848 42.308 0.00 0.00 39.39 3.41
1525 2045 6.151312 TCAGGAGAACATACTACAGAAGTGAC 59.849 42.308 0.00 0.00 39.39 3.67
1526 2046 6.246163 TCAGGAGAACATACTACAGAAGTGA 58.754 40.000 0.00 0.00 39.39 3.41
1527 2047 6.151985 ACTCAGGAGAACATACTACAGAAGTG 59.848 42.308 2.79 0.00 39.39 3.16
1532 2052 6.516739 TGAACTCAGGAGAACATACTACAG 57.483 41.667 2.79 0.00 0.00 2.74
1617 2150 2.171237 TGATTGCGATGGAGACCAATCT 59.829 45.455 11.88 0.00 42.34 2.40
1619 2152 2.715749 TGATTGCGATGGAGACCAAT 57.284 45.000 0.00 0.00 36.95 3.16
1620 2153 2.715749 ATGATTGCGATGGAGACCAA 57.284 45.000 0.00 0.00 36.95 3.67
1621 2154 2.037641 CCTATGATTGCGATGGAGACCA 59.962 50.000 0.00 0.00 38.19 4.02
1622 2155 2.300152 TCCTATGATTGCGATGGAGACC 59.700 50.000 0.00 0.00 0.00 3.85
1623 2156 3.667497 TCCTATGATTGCGATGGAGAC 57.333 47.619 0.00 0.00 0.00 3.36
1624 2157 4.092279 AGATCCTATGATTGCGATGGAGA 58.908 43.478 0.00 0.00 0.00 3.71
1625 2158 4.160065 AGAGATCCTATGATTGCGATGGAG 59.840 45.833 0.00 0.00 0.00 3.86
1626 2159 4.081807 CAGAGATCCTATGATTGCGATGGA 60.082 45.833 0.00 0.00 0.00 3.41
1627 2160 4.182339 CAGAGATCCTATGATTGCGATGG 58.818 47.826 0.00 0.00 0.00 3.51
1632 2165 4.613925 TGGACAGAGATCCTATGATTGC 57.386 45.455 0.00 0.00 39.75 3.56
1688 2221 2.224769 TGGAACCTTTAGACAAGGCAGG 60.225 50.000 0.25 0.00 41.10 4.85
1710 2243 7.524717 AAGTAAACAGATAGTGTGCCAAAAT 57.475 32.000 0.00 0.00 40.26 1.82
1714 2247 5.929992 GTGTAAGTAAACAGATAGTGTGCCA 59.070 40.000 0.00 0.00 40.26 4.92
1715 2248 5.929992 TGTGTAAGTAAACAGATAGTGTGCC 59.070 40.000 0.00 0.00 40.26 5.01
1717 2250 8.757164 TGATGTGTAAGTAAACAGATAGTGTG 57.243 34.615 0.00 0.00 40.26 3.82
1736 2269 4.328983 GGTAAACAGTGACCGTATGATGTG 59.671 45.833 0.00 0.00 0.00 3.21
1738 2271 4.500127 TGGTAAACAGTGACCGTATGATG 58.500 43.478 0.00 0.00 38.69 3.07
1746 2279 5.294552 GCATCTAGAATGGTAAACAGTGACC 59.705 44.000 0.00 0.00 36.17 4.02
1754 2287 8.659527 TCAGGATATTGCATCTAGAATGGTAAA 58.340 33.333 0.00 0.00 0.00 2.01
1782 2738 5.880054 TGATCAAACAAGCTAGTTAAGGC 57.120 39.130 0.00 0.00 0.00 4.35
1801 2820 3.199289 TCTTGCTGATCTGGTGACATGAT 59.801 43.478 0.00 0.00 41.51 2.45
1904 2927 2.685017 TGCATCCAGGAGCTCGGT 60.685 61.111 7.83 0.00 0.00 4.69
1918 2941 4.022416 GGTATGTTGGTCATGTTTTCTGCA 60.022 41.667 0.00 0.00 37.91 4.41
2085 3108 0.469144 AAGGTTTGGCGGAATGGTGT 60.469 50.000 0.00 0.00 0.00 4.16
2155 3179 5.827797 AGAAGCCATTCAACTTGTTGAAGTA 59.172 36.000 26.05 10.72 43.30 2.24
2181 3206 7.010552 ACGAATTCCTATCAGAAGAACATTTCG 59.989 37.037 0.00 0.00 37.06 3.46
2289 3369 0.594602 CATCCACTTGTGCCACACAG 59.405 55.000 0.00 1.20 45.39 3.66
2483 3568 1.918957 AGGCAGGAGTAAGGAATTGCT 59.081 47.619 0.00 0.00 0.00 3.91
2560 3645 5.604231 ACTCCTCATCATGTGCCTTATAGAA 59.396 40.000 0.00 0.00 0.00 2.10
2567 3652 2.306805 TGAAACTCCTCATCATGTGCCT 59.693 45.455 0.00 0.00 0.00 4.75
2598 3683 2.882324 CGTAGAGCAGAGGGTTTTCTC 58.118 52.381 0.00 0.00 0.00 2.87
2635 3720 3.895656 CAACGGGGTCTAGATAATCTCCA 59.104 47.826 0.00 0.00 0.00 3.86
2699 3936 6.211184 TCAGCATTTGAATGGGAAATAACAGT 59.789 34.615 5.91 0.00 36.90 3.55
3047 4325 7.389053 AGAAGAAAGACGAGAATGCAATTACTT 59.611 33.333 0.00 0.00 36.07 2.24
3062 4340 7.473366 TGCATACTTACTCTAGAAGAAAGACG 58.527 38.462 12.82 0.00 0.00 4.18
3076 4354 9.836864 TCATAATGATTTCACTGCATACTTACT 57.163 29.630 0.00 0.00 0.00 2.24
3217 4497 2.413837 GTCATGTACTTTGCACGGACT 58.586 47.619 0.00 0.00 0.00 3.85
3325 4605 0.389817 TGTTGATCTTCGGCACTCGG 60.390 55.000 0.00 0.00 39.77 4.63
3370 4650 3.538785 AACCGTGGCGTGTATGGCA 62.539 57.895 0.00 0.00 42.76 4.92
3508 4789 4.914983 TCTGAATCAGCTGAAACATTCCT 58.085 39.130 22.50 0.00 0.00 3.36
3511 4792 4.914983 TCCTCTGAATCAGCTGAAACATT 58.085 39.130 22.50 10.53 0.00 2.71
3607 4888 1.891919 GTTTCCACTGCTGTCGCCA 60.892 57.895 0.00 0.00 34.43 5.69
3663 4944 0.320771 CAGCGGGCCATACATAGGAC 60.321 60.000 4.39 0.00 0.00 3.85
3694 4975 0.107945 GAAGATTGACAGGCTCCGCT 60.108 55.000 0.00 0.00 0.00 5.52
3697 4978 2.777832 ACTGAAGATTGACAGGCTCC 57.222 50.000 0.00 0.00 38.30 4.70
3781 5062 1.211212 CCATCAGCCTTGGAGTCATCA 59.789 52.381 0.00 0.00 36.26 3.07
3935 5219 6.708949 TCTTATCATAGCGTAACCCATTTTCC 59.291 38.462 0.00 0.00 0.00 3.13
4096 5620 6.209391 TCTGTATGAGATGAAACAGTGTCAGA 59.791 38.462 0.00 0.00 40.18 3.27
4106 5634 7.493645 CACAAGCTGTATCTGTATGAGATGAAA 59.506 37.037 0.00 0.00 41.86 2.69
4182 5712 2.568509 TCATCAGTCTCTGCATCACCAA 59.431 45.455 0.00 0.00 0.00 3.67
4367 5897 1.363744 ATCGTAGCAGCAACAGCTTC 58.636 50.000 0.00 0.00 43.25 3.86
4372 5902 7.333423 AGTTTTCTTATTATCGTAGCAGCAACA 59.667 33.333 0.00 0.00 0.00 3.33
4373 5903 7.685594 AGTTTTCTTATTATCGTAGCAGCAAC 58.314 34.615 0.00 0.00 0.00 4.17
4374 5904 7.843490 AGTTTTCTTATTATCGTAGCAGCAA 57.157 32.000 0.00 0.00 0.00 3.91
4400 5931 3.107642 ACTACAAACTTCACCTCGGTG 57.892 47.619 9.82 9.82 46.64 4.94
4402 5933 3.463944 ACAACTACAAACTTCACCTCGG 58.536 45.455 0.00 0.00 0.00 4.63
4438 6051 3.149196 TGAGGCTGACTCCAAATTTGTC 58.851 45.455 16.73 8.62 46.01 3.18
4440 6068 4.461781 AGAATGAGGCTGACTCCAAATTTG 59.538 41.667 11.40 11.40 46.01 2.32
4508 6138 3.251729 AGCACTGCAACAGTTGTTATGAG 59.748 43.478 14.88 6.12 42.59 2.90
4509 6139 3.003585 CAGCACTGCAACAGTTGTTATGA 59.996 43.478 14.88 0.00 42.59 2.15
4525 6160 3.636679 TCTCTAGGTAGAATGCAGCACT 58.363 45.455 0.00 0.00 0.00 4.40
4625 6265 1.340795 CCTGCTTCCTCCATCTGCTTT 60.341 52.381 0.00 0.00 0.00 3.51
4709 6349 2.034532 TCGTCCGACCAGTAGCCA 59.965 61.111 0.00 0.00 0.00 4.75
4721 6361 2.505118 GTCTGCTGCTCGTCGTCC 60.505 66.667 0.00 0.00 0.00 4.79
4794 6437 3.754850 TCAGCCTTCTTCATGACATTGTG 59.245 43.478 0.00 0.00 0.00 3.33
4801 6966 3.490439 TGTTGTCAGCCTTCTTCATGA 57.510 42.857 0.00 0.00 0.00 3.07
4875 7040 1.073923 GTTCATTGTCAGAGGGTGGGT 59.926 52.381 0.00 0.00 0.00 4.51
4988 7153 1.242076 AGAACCACACTGCTGATTGC 58.758 50.000 0.00 0.00 43.25 3.56
4989 7154 2.417933 GCTAGAACCACACTGCTGATTG 59.582 50.000 0.00 0.00 0.00 2.67
5010 7175 7.763356 ACAACAACACAGCTAGTAGTAGATAG 58.237 38.462 8.87 1.34 0.00 2.08
5011 7176 7.698506 ACAACAACACAGCTAGTAGTAGATA 57.301 36.000 8.87 0.00 0.00 1.98
5012 7177 6.591750 ACAACAACACAGCTAGTAGTAGAT 57.408 37.500 8.87 0.00 0.00 1.98
5014 7179 7.478520 AAAACAACAACACAGCTAGTAGTAG 57.521 36.000 0.00 0.00 0.00 2.57
5015 7180 7.767198 AGAAAAACAACAACACAGCTAGTAGTA 59.233 33.333 0.00 0.00 0.00 1.82
5016 7181 6.598064 AGAAAAACAACAACACAGCTAGTAGT 59.402 34.615 0.00 0.00 0.00 2.73
5019 7184 5.897377 AGAAAAACAACAACACAGCTAGT 57.103 34.783 0.00 0.00 0.00 2.57
5037 7285 6.068010 ACCATGACCATCTTACAACAAGAAA 58.932 36.000 0.00 0.00 0.00 2.52
5057 7305 2.057140 TGGGATGCTACATGCTACCAT 58.943 47.619 0.00 0.00 43.37 3.55
5058 7306 1.506025 TGGGATGCTACATGCTACCA 58.494 50.000 0.00 0.00 43.37 3.25
5060 7308 2.304180 AGGATGGGATGCTACATGCTAC 59.696 50.000 0.00 0.00 42.78 3.58
5061 7309 2.624495 AGGATGGGATGCTACATGCTA 58.376 47.619 0.00 0.00 42.78 3.49
5062 7310 1.442773 AGGATGGGATGCTACATGCT 58.557 50.000 0.00 0.00 40.33 3.79
5063 7311 3.276857 CATAGGATGGGATGCTACATGC 58.723 50.000 0.00 0.00 35.98 4.06
5064 7312 4.564782 ACATAGGATGGGATGCTACATG 57.435 45.455 0.00 0.00 35.98 3.21
5065 7313 4.352001 ACAACATAGGATGGGATGCTACAT 59.648 41.667 0.00 0.00 35.98 2.29
5066 7314 3.716353 ACAACATAGGATGGGATGCTACA 59.284 43.478 0.00 0.00 35.98 2.74
5106 7354 2.146061 GCTCCCCTCCCCTGATCTG 61.146 68.421 0.00 0.00 0.00 2.90
5128 7380 2.043227 CTGTCAGGGAGGGAAGGATAC 58.957 57.143 0.00 0.00 0.00 2.24
5216 7482 6.322969 TGAATCAATCAATCAATCAAGGGGAG 59.677 38.462 0.00 0.00 34.30 4.30
5253 7525 5.009210 GTCGATCTAGCAAGTATCCAACTCT 59.991 44.000 0.00 0.00 37.50 3.24
5280 7552 4.982916 AGTACGTAATATAGTTGCTGCAGC 59.017 41.667 31.89 31.89 42.50 5.25
5293 7565 7.279981 AGCTGCATCATTTTTCAGTACGTAATA 59.720 33.333 1.02 0.00 0.00 0.98
5294 7566 6.094048 AGCTGCATCATTTTTCAGTACGTAAT 59.906 34.615 1.02 0.00 0.00 1.89
5295 7567 5.411361 AGCTGCATCATTTTTCAGTACGTAA 59.589 36.000 1.02 0.00 0.00 3.18
5296 7568 4.935205 AGCTGCATCATTTTTCAGTACGTA 59.065 37.500 1.02 0.00 0.00 3.57
5297 7569 3.753272 AGCTGCATCATTTTTCAGTACGT 59.247 39.130 1.02 0.00 0.00 3.57
5298 7570 4.346734 AGCTGCATCATTTTTCAGTACG 57.653 40.909 1.02 0.00 0.00 3.67
5299 7571 5.346822 CCAAAGCTGCATCATTTTTCAGTAC 59.653 40.000 1.02 0.00 0.00 2.73
5300 7572 5.472148 CCAAAGCTGCATCATTTTTCAGTA 58.528 37.500 1.02 0.00 0.00 2.74
5301 7573 4.312443 CCAAAGCTGCATCATTTTTCAGT 58.688 39.130 1.02 0.00 0.00 3.41
5302 7574 3.124636 GCCAAAGCTGCATCATTTTTCAG 59.875 43.478 1.02 0.00 35.50 3.02
5303 7575 3.068560 GCCAAAGCTGCATCATTTTTCA 58.931 40.909 1.02 0.00 35.50 2.69
5304 7576 3.734776 GCCAAAGCTGCATCATTTTTC 57.265 42.857 1.02 0.00 35.50 2.29
5323 7595 2.024414 CCACCACCAATTAGCCTTAGC 58.976 52.381 0.00 0.00 40.32 3.09
5324 7596 3.279434 GACCACCACCAATTAGCCTTAG 58.721 50.000 0.00 0.00 0.00 2.18
5325 7597 2.355310 CGACCACCACCAATTAGCCTTA 60.355 50.000 0.00 0.00 0.00 2.69
5327 7599 0.035439 CGACCACCACCAATTAGCCT 60.035 55.000 0.00 0.00 0.00 4.58
5328 7600 0.322187 ACGACCACCACCAATTAGCC 60.322 55.000 0.00 0.00 0.00 3.93
5330 7602 2.742053 CAAGACGACCACCACCAATTAG 59.258 50.000 0.00 0.00 0.00 1.73
5331 7603 2.551287 CCAAGACGACCACCACCAATTA 60.551 50.000 0.00 0.00 0.00 1.40
5332 7604 1.604604 CAAGACGACCACCACCAATT 58.395 50.000 0.00 0.00 0.00 2.32
5333 7605 0.250727 CCAAGACGACCACCACCAAT 60.251 55.000 0.00 0.00 0.00 3.16
5334 7606 1.147376 CCAAGACGACCACCACCAA 59.853 57.895 0.00 0.00 0.00 3.67
5593 7865 1.608717 GAGGGAGCAAGGCGAGAAGA 61.609 60.000 0.00 0.00 0.00 2.87
5770 8048 4.087892 CCCTCCTCCACACAGCCG 62.088 72.222 0.00 0.00 0.00 5.52
5791 8069 3.121030 CCACTACACGCAGCTGCC 61.121 66.667 32.07 15.05 37.91 4.85
5794 8072 2.159819 CTCCACCACTACACGCAGCT 62.160 60.000 0.00 0.00 0.00 4.24
5800 8078 1.187087 CTCCTCCTCCACCACTACAC 58.813 60.000 0.00 0.00 0.00 2.90
5801 8079 0.041238 CCTCCTCCTCCACCACTACA 59.959 60.000 0.00 0.00 0.00 2.74
5803 8081 1.001760 GCCTCCTCCTCCACCACTA 59.998 63.158 0.00 0.00 0.00 2.74
5804 8082 2.284995 GCCTCCTCCTCCACCACT 60.285 66.667 0.00 0.00 0.00 4.00
5805 8083 3.775654 CGCCTCCTCCTCCACCAC 61.776 72.222 0.00 0.00 0.00 4.16
5822 8103 1.150081 CTCATCCCCTCCATGGCAC 59.850 63.158 6.96 0.00 0.00 5.01
5823 8104 2.760378 GCTCATCCCCTCCATGGCA 61.760 63.158 6.96 0.00 0.00 4.92
5888 8169 5.247110 TGAGGGGATAATGAAGCAGATAGAC 59.753 44.000 0.00 0.00 0.00 2.59
5935 8230 4.025401 GCGCTCCGTTGGTGTTGG 62.025 66.667 0.00 0.00 0.00 3.77
5936 8231 4.368808 CGCGCTCCGTTGGTGTTG 62.369 66.667 5.56 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.