Multiple sequence alignment - TraesCS6A01G025700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G025700 chr6A 100.000 3657 0 0 1 3657 12839190 12835534 0.000000e+00 6754.0
1 TraesCS6A01G025700 chr6A 87.978 183 22 0 1 183 586843667 586843849 2.210000e-52 217.0
2 TraesCS6A01G025700 chr6A 87.912 182 22 0 1 182 376909783 376909964 7.950000e-52 215.0
3 TraesCS6A01G025700 chr6D 90.157 1717 106 27 318 1995 11410306 11408614 0.000000e+00 2176.0
4 TraesCS6A01G025700 chr6D 96.254 961 23 7 2068 3026 11408571 11407622 0.000000e+00 1563.0
5 TraesCS6A01G025700 chr6D 93.058 605 30 4 3064 3657 11407622 11407019 0.000000e+00 874.0
6 TraesCS6A01G025700 chr6D 83.008 359 50 9 3305 3653 11428561 11428918 7.620000e-82 315.0
7 TraesCS6A01G025700 chr6D 96.133 181 7 0 2 182 43453187 43453007 2.760000e-76 296.0
8 TraesCS6A01G025700 chr6D 79.012 405 71 10 342 741 2900419 2900024 7.790000e-67 265.0
9 TraesCS6A01G025700 chr6D 95.489 133 5 1 176 308 11411086 11410955 1.030000e-50 211.0
10 TraesCS6A01G025700 chr6B 86.777 1384 77 42 692 2009 21286179 21284836 0.000000e+00 1445.0
11 TraesCS6A01G025700 chr6B 95.135 925 24 11 2052 2969 21284837 21283927 0.000000e+00 1439.0
12 TraesCS6A01G025700 chr6B 93.410 698 39 4 2961 3657 21278776 21278085 0.000000e+00 1027.0
13 TraesCS6A01G025700 chr6B 77.880 217 39 6 3096 3310 49970243 49970034 3.830000e-25 126.0
14 TraesCS6A01G025700 chr6B 97.674 43 0 1 270 311 79873761 79873719 5.070000e-09 73.1
15 TraesCS6A01G025700 chr7A 97.814 183 4 0 1 183 432695975 432695793 2.120000e-82 316.0
16 TraesCS6A01G025700 chr7A 81.522 276 47 3 330 604 522509742 522510014 1.320000e-54 224.0
17 TraesCS6A01G025700 chr7A 87.363 182 23 0 1 182 251524545 251524726 3.700000e-50 209.0
18 TraesCS6A01G025700 chr4A 93.407 182 11 1 1 182 717814297 717814117 6.020000e-68 268.0
19 TraesCS6A01G025700 chr4A 77.067 375 78 7 315 685 665458124 665458494 3.700000e-50 209.0
20 TraesCS6A01G025700 chr4B 92.896 183 12 1 1 183 437243662 437243843 7.790000e-67 265.0
21 TraesCS6A01G025700 chr3B 78.036 387 74 9 340 723 174904658 174905036 2.200000e-57 233.0
22 TraesCS6A01G025700 chr3B 80.753 239 41 3 361 599 3265254 3265021 8.070000e-42 182.0
23 TraesCS6A01G025700 chr3D 77.284 405 75 14 343 741 275908882 275908489 4.750000e-54 222.0
24 TraesCS6A01G025700 chr3D 76.404 267 56 6 340 604 297676135 297676396 1.770000e-28 137.0
25 TraesCS6A01G025700 chr4D 77.003 387 79 9 315 697 8154855 8155235 2.860000e-51 213.0
26 TraesCS6A01G025700 chr4D 75.829 211 37 5 446 647 44986945 44986740 1.080000e-15 95.3
27 TraesCS6A01G025700 chr7D 77.534 365 69 10 340 697 635668995 635669353 1.330000e-49 207.0
28 TraesCS6A01G025700 chr7D 77.358 371 71 10 340 703 636338882 636338518 1.330000e-49 207.0
29 TraesCS6A01G025700 chr3A 86.264 182 25 0 1 182 685349637 685349818 8.010000e-47 198.0
30 TraesCS6A01G025700 chr1A 84.615 182 28 0 1 182 254392623 254392442 8.070000e-42 182.0
31 TraesCS6A01G025700 chr5B 81.860 215 38 1 3097 3310 239336193 239336407 2.900000e-41 180.0
32 TraesCS6A01G025700 chr5D 80.808 198 36 2 3114 3310 356087069 356086873 1.760000e-33 154.0
33 TraesCS6A01G025700 chr5D 72.659 267 59 10 340 596 500488316 500488578 3.920000e-10 76.8
34 TraesCS6A01G025700 chr1D 95.652 46 2 0 2129 2174 490324197 490324152 1.410000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G025700 chr6A 12835534 12839190 3656 True 6754 6754 100.0000 1 3657 1 chr6A.!!$R1 3656
1 TraesCS6A01G025700 chr6D 11407019 11411086 4067 True 1206 2176 93.7395 176 3657 4 chr6D.!!$R3 3481
2 TraesCS6A01G025700 chr6B 21283927 21286179 2252 True 1442 1445 90.9560 692 2969 2 chr6B.!!$R4 2277
3 TraesCS6A01G025700 chr6B 21278085 21278776 691 True 1027 1027 93.4100 2961 3657 1 chr6B.!!$R1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.034186 AAGAGCAAATCCGATGGCCA 60.034 50.0 8.56 8.56 0.00 5.36 F
149 150 0.107017 TGCTGATGGCTTAAGAGGGC 60.107 55.0 6.67 1.95 42.39 5.19 F
168 169 0.111253 CTGGGAGGGTGCTCAGTTTT 59.889 55.0 0.00 0.00 0.00 2.43 F
534 1175 0.390124 AACGACAACTACGGCTCCAA 59.610 50.0 0.00 0.00 34.93 3.53 F
2049 2787 0.247460 CAGCCTCGATCAGTGACCAA 59.753 55.0 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1376 2045 0.109458 TCCGATCACAAACTCCGACG 60.109 55.0 0.0 0.0 0.0 5.12 R
2030 2768 0.247460 TTGGTCACTGATCGAGGCTG 59.753 55.0 0.0 0.0 0.0 4.85 R
2031 2769 0.976641 TTTGGTCACTGATCGAGGCT 59.023 50.0 0.0 0.0 0.0 4.58 R
2439 3201 0.250234 CCATCTTCGTCAGGCTCCAA 59.750 55.0 0.0 0.0 0.0 3.53 R
3060 3829 0.032815 TGATCAGCGACCGTGTTGAA 59.967 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.443588 AAAAACCACGGGAGCAGC 58.556 55.556 0.00 0.00 0.00 5.25
19 20 2.551912 AAAAACCACGGGAGCAGCG 61.552 57.895 0.00 0.00 0.00 5.18
38 39 3.532155 CCCGAGAAGGCTAGCGCT 61.532 66.667 17.26 17.26 39.21 5.92
39 40 2.026879 CCGAGAAGGCTAGCGCTC 59.973 66.667 16.34 13.71 36.09 5.03
40 41 2.352915 CGAGAAGGCTAGCGCTCG 60.353 66.667 27.10 27.10 43.25 5.03
41 42 2.802106 GAGAAGGCTAGCGCTCGT 59.198 61.111 16.34 0.00 36.09 4.18
42 43 1.298788 GAGAAGGCTAGCGCTCGTC 60.299 63.158 16.34 10.15 36.09 4.20
43 44 1.994507 GAGAAGGCTAGCGCTCGTCA 61.995 60.000 16.34 0.00 36.09 4.35
44 45 1.066587 GAAGGCTAGCGCTCGTCAT 59.933 57.895 16.34 0.25 36.09 3.06
45 46 1.211818 GAAGGCTAGCGCTCGTCATG 61.212 60.000 16.34 0.00 36.09 3.07
46 47 1.667154 AAGGCTAGCGCTCGTCATGA 61.667 55.000 16.34 0.00 36.09 3.07
47 48 1.226974 GGCTAGCGCTCGTCATGAA 60.227 57.895 16.34 0.00 36.09 2.57
48 49 1.211818 GGCTAGCGCTCGTCATGAAG 61.212 60.000 16.34 3.71 36.09 3.02
49 50 1.816214 GCTAGCGCTCGTCATGAAGC 61.816 60.000 16.34 11.59 0.00 3.86
50 51 1.211818 CTAGCGCTCGTCATGAAGCC 61.212 60.000 16.34 6.75 32.52 4.35
51 52 1.667154 TAGCGCTCGTCATGAAGCCT 61.667 55.000 16.34 12.43 32.52 4.58
52 53 2.806856 GCGCTCGTCATGAAGCCTG 61.807 63.158 12.68 2.68 0.00 4.85
53 54 2.806856 CGCTCGTCATGAAGCCTGC 61.807 63.158 12.68 10.96 0.00 4.85
54 55 1.742880 GCTCGTCATGAAGCCTGCA 60.743 57.895 8.01 0.00 0.00 4.41
55 56 1.975363 GCTCGTCATGAAGCCTGCAC 61.975 60.000 8.01 0.00 0.00 4.57
56 57 1.690283 CTCGTCATGAAGCCTGCACG 61.690 60.000 3.49 0.00 0.00 5.34
57 58 2.482374 GTCATGAAGCCTGCACGC 59.518 61.111 0.00 0.00 0.00 5.34
58 59 3.120385 TCATGAAGCCTGCACGCG 61.120 61.111 3.53 3.53 0.00 6.01
59 60 4.824166 CATGAAGCCTGCACGCGC 62.824 66.667 5.73 0.00 39.24 6.86
66 67 4.817063 CCTGCACGCGCGATTTGG 62.817 66.667 39.36 26.46 42.97 3.28
67 68 3.787676 CTGCACGCGCGATTTGGA 61.788 61.111 39.36 24.36 42.97 3.53
68 69 3.099619 CTGCACGCGCGATTTGGAT 62.100 57.895 39.36 9.38 42.97 3.41
69 70 2.648724 GCACGCGCGATTTGGATG 60.649 61.111 39.36 23.13 0.00 3.51
70 71 2.648724 CACGCGCGATTTGGATGC 60.649 61.111 39.36 0.00 0.00 3.91
71 72 3.124270 ACGCGCGATTTGGATGCA 61.124 55.556 39.36 0.00 0.00 3.96
72 73 2.100023 CGCGCGATTTGGATGCAA 59.900 55.556 28.94 0.00 0.00 4.08
73 74 1.298563 CGCGCGATTTGGATGCAAT 60.299 52.632 28.94 0.00 0.00 3.56
74 75 0.866906 CGCGCGATTTGGATGCAATT 60.867 50.000 28.94 0.00 0.00 2.32
75 76 1.596709 CGCGCGATTTGGATGCAATTA 60.597 47.619 28.94 0.00 0.00 1.40
76 77 2.458951 GCGCGATTTGGATGCAATTAA 58.541 42.857 12.10 0.00 0.00 1.40
77 78 2.468777 GCGCGATTTGGATGCAATTAAG 59.531 45.455 12.10 0.00 0.00 1.85
78 79 3.791789 GCGCGATTTGGATGCAATTAAGA 60.792 43.478 12.10 0.00 0.00 2.10
79 80 3.970610 CGCGATTTGGATGCAATTAAGAG 59.029 43.478 0.00 0.00 0.00 2.85
80 81 3.732721 GCGATTTGGATGCAATTAAGAGC 59.267 43.478 0.00 0.00 0.00 4.09
81 82 4.734402 GCGATTTGGATGCAATTAAGAGCA 60.734 41.667 0.00 7.02 45.92 4.26
82 83 5.342433 CGATTTGGATGCAATTAAGAGCAA 58.658 37.500 0.00 0.00 44.88 3.91
83 84 5.806502 CGATTTGGATGCAATTAAGAGCAAA 59.193 36.000 0.00 0.00 44.88 3.68
84 85 6.477688 CGATTTGGATGCAATTAAGAGCAAAT 59.522 34.615 0.00 0.00 44.88 2.32
85 86 7.306399 CGATTTGGATGCAATTAAGAGCAAATC 60.306 37.037 0.00 0.30 44.88 2.17
86 87 5.266733 TGGATGCAATTAAGAGCAAATCC 57.733 39.130 13.61 13.61 44.88 3.01
87 88 4.202040 TGGATGCAATTAAGAGCAAATCCG 60.202 41.667 14.72 0.00 44.88 4.18
88 89 4.036734 GGATGCAATTAAGAGCAAATCCGA 59.963 41.667 8.45 0.00 44.88 4.55
89 90 5.278660 GGATGCAATTAAGAGCAAATCCGAT 60.279 40.000 8.45 0.00 44.88 4.18
90 91 4.923893 TGCAATTAAGAGCAAATCCGATG 58.076 39.130 2.44 0.00 37.90 3.84
91 92 4.202040 TGCAATTAAGAGCAAATCCGATGG 60.202 41.667 2.44 0.00 37.90 3.51
92 93 4.293415 CAATTAAGAGCAAATCCGATGGC 58.707 43.478 0.00 0.00 0.00 4.40
93 94 1.967319 TAAGAGCAAATCCGATGGCC 58.033 50.000 0.00 0.00 0.00 5.36
94 95 0.034186 AAGAGCAAATCCGATGGCCA 60.034 50.000 8.56 8.56 0.00 5.36
95 96 0.034186 AGAGCAAATCCGATGGCCAA 60.034 50.000 10.96 0.00 0.00 4.52
96 97 0.817013 GAGCAAATCCGATGGCCAAA 59.183 50.000 10.96 0.00 0.00 3.28
97 98 1.204467 GAGCAAATCCGATGGCCAAAA 59.796 47.619 10.96 0.00 0.00 2.44
98 99 1.622811 AGCAAATCCGATGGCCAAAAA 59.377 42.857 10.96 0.00 0.00 1.94
99 100 1.731709 GCAAATCCGATGGCCAAAAAC 59.268 47.619 10.96 0.49 0.00 2.43
100 101 1.991965 CAAATCCGATGGCCAAAAACG 59.008 47.619 10.96 13.54 0.00 3.60
101 102 1.540267 AATCCGATGGCCAAAAACGA 58.460 45.000 10.96 1.09 0.00 3.85
102 103 0.808755 ATCCGATGGCCAAAAACGAC 59.191 50.000 10.96 0.00 0.00 4.34
103 104 0.250553 TCCGATGGCCAAAAACGACT 60.251 50.000 10.96 0.00 0.00 4.18
104 105 1.002201 TCCGATGGCCAAAAACGACTA 59.998 47.619 10.96 0.62 0.00 2.59
105 106 1.807742 CCGATGGCCAAAAACGACTAA 59.192 47.619 10.96 0.00 0.00 2.24
106 107 2.226912 CCGATGGCCAAAAACGACTAAA 59.773 45.455 10.96 0.00 0.00 1.85
107 108 3.304794 CCGATGGCCAAAAACGACTAAAA 60.305 43.478 10.96 0.00 0.00 1.52
108 109 3.911964 CGATGGCCAAAAACGACTAAAAG 59.088 43.478 10.96 0.00 0.00 2.27
109 110 4.555906 CGATGGCCAAAAACGACTAAAAGT 60.556 41.667 10.96 0.00 0.00 2.66
110 111 4.035278 TGGCCAAAAACGACTAAAAGTG 57.965 40.909 0.61 0.00 0.00 3.16
111 112 3.695060 TGGCCAAAAACGACTAAAAGTGA 59.305 39.130 0.61 0.00 0.00 3.41
112 113 4.039703 GGCCAAAAACGACTAAAAGTGAC 58.960 43.478 0.00 0.00 0.00 3.67
113 114 3.722289 GCCAAAAACGACTAAAAGTGACG 59.278 43.478 0.00 0.00 0.00 4.35
114 115 4.494526 GCCAAAAACGACTAAAAGTGACGA 60.495 41.667 0.00 0.00 0.00 4.20
115 116 5.744490 CCAAAAACGACTAAAAGTGACGAT 58.256 37.500 0.00 0.00 0.00 3.73
116 117 5.844396 CCAAAAACGACTAAAAGTGACGATC 59.156 40.000 0.00 0.00 0.00 3.69
117 118 5.587033 AAAACGACTAAAAGTGACGATCC 57.413 39.130 0.00 0.00 0.00 3.36
118 119 3.928727 ACGACTAAAAGTGACGATCCA 57.071 42.857 0.00 0.00 0.00 3.41
119 120 4.247267 ACGACTAAAAGTGACGATCCAA 57.753 40.909 0.00 0.00 0.00 3.53
120 121 3.985925 ACGACTAAAAGTGACGATCCAAC 59.014 43.478 0.00 0.00 0.00 3.77
121 122 3.059044 CGACTAAAAGTGACGATCCAACG 59.941 47.826 0.00 0.00 39.31 4.10
122 123 4.232221 GACTAAAAGTGACGATCCAACGA 58.768 43.478 0.00 0.00 37.03 3.85
123 124 4.817517 ACTAAAAGTGACGATCCAACGAT 58.182 39.130 0.00 0.00 37.03 3.73
124 125 5.235516 ACTAAAAGTGACGATCCAACGATT 58.764 37.500 0.00 0.00 37.03 3.34
125 126 6.392354 ACTAAAAGTGACGATCCAACGATTA 58.608 36.000 0.00 0.00 37.03 1.75
126 127 6.869913 ACTAAAAGTGACGATCCAACGATTAA 59.130 34.615 0.00 0.00 37.03 1.40
127 128 6.548441 AAAAGTGACGATCCAACGATTAAA 57.452 33.333 0.00 0.00 37.03 1.52
128 129 6.548441 AAAGTGACGATCCAACGATTAAAA 57.452 33.333 0.00 0.00 37.03 1.52
129 130 6.548441 AAGTGACGATCCAACGATTAAAAA 57.452 33.333 0.00 0.00 37.03 1.94
130 131 6.737254 AGTGACGATCCAACGATTAAAAAT 57.263 33.333 0.00 0.00 37.03 1.82
131 132 6.542852 AGTGACGATCCAACGATTAAAAATG 58.457 36.000 0.00 0.00 37.03 2.32
132 133 5.227184 GTGACGATCCAACGATTAAAAATGC 59.773 40.000 0.00 0.00 37.03 3.56
133 134 5.123186 TGACGATCCAACGATTAAAAATGCT 59.877 36.000 0.00 0.00 37.03 3.79
134 135 5.331902 ACGATCCAACGATTAAAAATGCTG 58.668 37.500 0.00 0.00 37.03 4.41
135 136 5.123186 ACGATCCAACGATTAAAAATGCTGA 59.877 36.000 0.00 0.00 37.03 4.26
136 137 6.183360 ACGATCCAACGATTAAAAATGCTGAT 60.183 34.615 0.00 0.00 37.03 2.90
137 138 6.141211 CGATCCAACGATTAAAAATGCTGATG 59.859 38.462 0.00 0.00 35.09 3.07
138 139 5.649557 TCCAACGATTAAAAATGCTGATGG 58.350 37.500 0.00 0.00 0.00 3.51
139 140 4.268405 CCAACGATTAAAAATGCTGATGGC 59.732 41.667 0.00 0.00 42.22 4.40
140 141 4.989279 ACGATTAAAAATGCTGATGGCT 57.011 36.364 0.00 0.00 42.39 4.75
141 142 5.329035 ACGATTAAAAATGCTGATGGCTT 57.671 34.783 0.00 0.00 42.39 4.35
142 143 6.449635 ACGATTAAAAATGCTGATGGCTTA 57.550 33.333 0.00 0.00 42.39 3.09
143 144 6.862209 ACGATTAAAAATGCTGATGGCTTAA 58.138 32.000 0.00 0.00 42.39 1.85
144 145 6.974622 ACGATTAAAAATGCTGATGGCTTAAG 59.025 34.615 0.00 0.00 42.39 1.85
145 146 7.148086 ACGATTAAAAATGCTGATGGCTTAAGA 60.148 33.333 6.67 0.00 42.39 2.10
146 147 7.377928 CGATTAAAAATGCTGATGGCTTAAGAG 59.622 37.037 6.67 0.00 42.39 2.85
147 148 4.996788 AAAATGCTGATGGCTTAAGAGG 57.003 40.909 6.67 0.00 42.39 3.69
148 149 2.653234 ATGCTGATGGCTTAAGAGGG 57.347 50.000 6.67 0.00 42.39 4.30
149 150 0.107017 TGCTGATGGCTTAAGAGGGC 60.107 55.000 6.67 1.95 42.39 5.19
150 151 0.182299 GCTGATGGCTTAAGAGGGCT 59.818 55.000 6.67 0.00 38.06 5.19
151 152 1.964552 CTGATGGCTTAAGAGGGCTG 58.035 55.000 6.67 0.00 0.00 4.85
152 153 0.548031 TGATGGCTTAAGAGGGCTGG 59.452 55.000 6.67 0.00 0.00 4.85
153 154 0.179006 GATGGCTTAAGAGGGCTGGG 60.179 60.000 6.67 0.00 0.00 4.45
154 155 0.624500 ATGGCTTAAGAGGGCTGGGA 60.625 55.000 6.67 0.00 0.00 4.37
155 156 1.274703 TGGCTTAAGAGGGCTGGGAG 61.275 60.000 6.67 0.00 0.00 4.30
156 157 1.529309 GCTTAAGAGGGCTGGGAGG 59.471 63.158 6.67 0.00 0.00 4.30
157 158 1.988982 GCTTAAGAGGGCTGGGAGGG 61.989 65.000 6.67 0.00 0.00 4.30
158 159 0.621862 CTTAAGAGGGCTGGGAGGGT 60.622 60.000 0.00 0.00 0.00 4.34
159 160 0.914417 TTAAGAGGGCTGGGAGGGTG 60.914 60.000 0.00 0.00 0.00 4.61
164 165 4.106925 GGCTGGGAGGGTGCTCAG 62.107 72.222 0.00 0.00 0.00 3.35
165 166 3.325753 GCTGGGAGGGTGCTCAGT 61.326 66.667 0.00 0.00 0.00 3.41
166 167 2.900106 GCTGGGAGGGTGCTCAGTT 61.900 63.158 0.00 0.00 0.00 3.16
167 168 1.763770 CTGGGAGGGTGCTCAGTTT 59.236 57.895 0.00 0.00 0.00 2.66
168 169 0.111253 CTGGGAGGGTGCTCAGTTTT 59.889 55.000 0.00 0.00 0.00 2.43
169 170 1.351017 CTGGGAGGGTGCTCAGTTTTA 59.649 52.381 0.00 0.00 0.00 1.52
170 171 1.777878 TGGGAGGGTGCTCAGTTTTAA 59.222 47.619 0.00 0.00 0.00 1.52
171 172 2.378547 TGGGAGGGTGCTCAGTTTTAAT 59.621 45.455 0.00 0.00 0.00 1.40
172 173 3.589735 TGGGAGGGTGCTCAGTTTTAATA 59.410 43.478 0.00 0.00 0.00 0.98
173 174 4.229582 TGGGAGGGTGCTCAGTTTTAATAT 59.770 41.667 0.00 0.00 0.00 1.28
174 175 5.430417 TGGGAGGGTGCTCAGTTTTAATATA 59.570 40.000 0.00 0.00 0.00 0.86
175 176 6.102615 TGGGAGGGTGCTCAGTTTTAATATAT 59.897 38.462 0.00 0.00 0.00 0.86
176 177 6.655425 GGGAGGGTGCTCAGTTTTAATATATC 59.345 42.308 0.00 0.00 0.00 1.63
177 178 7.454225 GGAGGGTGCTCAGTTTTAATATATCT 58.546 38.462 0.00 0.00 0.00 1.98
178 179 8.594550 GGAGGGTGCTCAGTTTTAATATATCTA 58.405 37.037 0.00 0.00 0.00 1.98
179 180 9.998106 GAGGGTGCTCAGTTTTAATATATCTAA 57.002 33.333 0.00 0.00 0.00 2.10
217 218 3.690139 TCAAAGTGCGTCAACAACCTTAA 59.310 39.130 0.00 0.00 0.00 1.85
221 222 2.779471 GTGCGTCAACAACCTTAAAACG 59.221 45.455 0.00 0.00 0.00 3.60
249 250 7.636359 GCTCATTGTTATGTGTCTATTTTCGAC 59.364 37.037 0.00 0.00 33.34 4.20
258 259 3.747529 TGTCTATTTTCGACGGGGTTTTC 59.252 43.478 0.00 0.00 34.17 2.29
324 964 3.484524 TTTTTACTCGCGACGCTCT 57.515 47.368 19.02 2.09 0.00 4.09
328 968 1.571215 TTACTCGCGACGCTCTGACA 61.571 55.000 19.02 0.00 0.00 3.58
333 973 0.655915 CGCGACGCTCTGACAGATAG 60.656 60.000 19.02 5.74 0.00 2.08
334 974 0.932585 GCGACGCTCTGACAGATAGC 60.933 60.000 13.73 6.12 0.00 2.97
348 988 4.739195 ACAGATAGCGACACTTCTTCTTC 58.261 43.478 0.00 0.00 0.00 2.87
355 995 4.084328 AGCGACACTTCTTCTTCGATTTTG 60.084 41.667 0.00 0.00 33.20 2.44
361 1001 8.433421 ACACTTCTTCTTCGATTTTGTCTTTA 57.567 30.769 0.00 0.00 0.00 1.85
364 1004 7.931948 ACTTCTTCTTCGATTTTGTCTTTAGGA 59.068 33.333 0.00 0.00 0.00 2.94
367 1007 7.931948 TCTTCTTCGATTTTGTCTTTAGGACTT 59.068 33.333 0.00 0.00 44.74 3.01
373 1013 7.386848 TCGATTTTGTCTTTAGGACTTCGATTT 59.613 33.333 0.00 0.00 44.74 2.17
375 1015 9.331106 GATTTTGTCTTTAGGACTTCGATTTTC 57.669 33.333 0.00 0.00 44.74 2.29
378 1018 7.235935 TGTCTTTAGGACTTCGATTTTCCTA 57.764 36.000 11.38 11.38 44.74 2.94
392 1032 3.565905 TTTCCTAGAGTTCGTTCGTCC 57.434 47.619 0.00 0.00 0.00 4.79
421 1061 3.214250 GATGGAGCTCCGGCGTAGG 62.214 68.421 27.43 0.00 44.37 3.18
427 1067 2.494918 CTCCGGCGTAGGTTCCTG 59.505 66.667 6.01 0.00 0.00 3.86
428 1068 3.718210 CTCCGGCGTAGGTTCCTGC 62.718 68.421 6.01 0.00 0.00 4.85
434 1074 0.458716 GCGTAGGTTCCTGCTGTCTC 60.459 60.000 1.12 0.00 0.00 3.36
443 1083 1.483595 CCTGCTGTCTCCTTGGGACA 61.484 60.000 0.00 0.00 40.78 4.02
470 1110 3.323979 AGTTAGGGTTTCTCGTCATGTGT 59.676 43.478 0.00 0.00 0.00 3.72
473 1114 1.336517 GGGTTTCTCGTCATGTGTCGA 60.337 52.381 2.71 2.71 34.74 4.20
494 1135 2.878406 AGATTTGGTGTCAGGTGTTTCG 59.122 45.455 0.00 0.00 0.00 3.46
507 1148 5.050490 CAGGTGTTTCGGATCTATACAAGG 58.950 45.833 0.00 0.00 0.00 3.61
515 1156 4.712829 TCGGATCTATACAAGGGTTCAACA 59.287 41.667 0.00 0.00 0.00 3.33
534 1175 0.390124 AACGACAACTACGGCTCCAA 59.610 50.000 0.00 0.00 34.93 3.53
541 1182 1.200519 ACTACGGCTCCAAGGCATTA 58.799 50.000 1.31 0.00 41.44 1.90
544 1185 1.392589 ACGGCTCCAAGGCATTATTG 58.607 50.000 1.31 0.00 41.44 1.90
545 1186 1.340991 ACGGCTCCAAGGCATTATTGT 60.341 47.619 1.31 0.00 41.44 2.71
546 1187 1.750778 CGGCTCCAAGGCATTATTGTT 59.249 47.619 1.31 0.00 41.44 2.83
547 1188 2.166254 CGGCTCCAAGGCATTATTGTTT 59.834 45.455 1.31 0.00 41.44 2.83
548 1189 3.734902 CGGCTCCAAGGCATTATTGTTTC 60.735 47.826 1.31 0.00 41.44 2.78
556 1197 5.466127 AGGCATTATTGTTTCTTAGGGGA 57.534 39.130 0.00 0.00 0.00 4.81
566 1207 1.180456 TCTTAGGGGAACGTGCACGA 61.180 55.000 42.94 18.38 43.02 4.35
573 1214 0.507358 GGAACGTGCACGAAGACTTC 59.493 55.000 42.94 32.00 43.02 3.01
576 1217 1.300620 CGTGCACGAAGACTTCCCA 60.301 57.895 34.93 2.19 43.02 4.37
577 1218 0.878523 CGTGCACGAAGACTTCCCAA 60.879 55.000 34.93 0.00 43.02 4.12
580 1221 0.868406 GCACGAAGACTTCCCAACTG 59.132 55.000 9.63 0.00 0.00 3.16
588 1229 2.834549 AGACTTCCCAACTGTCATCGAT 59.165 45.455 0.00 0.00 33.56 3.59
591 1232 4.759782 ACTTCCCAACTGTCATCGATAAG 58.240 43.478 0.00 0.00 0.00 1.73
600 1241 2.494471 TGTCATCGATAAGGTCAACCGT 59.506 45.455 0.00 0.00 42.08 4.83
606 1247 3.119602 TCGATAAGGTCAACCGTCTCAAG 60.120 47.826 0.00 0.00 42.08 3.02
618 1259 2.159226 CCGTCTCAAGTAAGGAAGCGAT 60.159 50.000 0.00 0.00 0.00 4.58
628 1269 3.520290 AAGGAAGCGATGATAACGTCA 57.480 42.857 0.00 0.00 42.06 4.35
633 1274 1.131693 AGCGATGATAACGTCACGTCA 59.868 47.619 1.67 0.00 39.99 4.35
640 1281 2.791396 TAACGTCACGTCAGCGGCTC 62.791 60.000 1.67 0.00 39.99 4.70
641 1282 4.406173 CGTCACGTCAGCGGCTCT 62.406 66.667 0.00 0.00 43.45 4.09
645 1286 1.373497 CACGTCAGCGGCTCTTTCT 60.373 57.895 0.00 0.00 43.45 2.52
678 1320 2.758979 GTCCTTCAGTGGTCTCGGAATA 59.241 50.000 0.00 0.00 0.00 1.75
687 1329 6.655425 TCAGTGGTCTCGGAATATCTATGTAG 59.345 42.308 0.00 0.00 0.00 2.74
689 1331 7.005296 AGTGGTCTCGGAATATCTATGTAGTT 58.995 38.462 0.00 0.00 0.00 2.24
690 1332 7.506261 AGTGGTCTCGGAATATCTATGTAGTTT 59.494 37.037 0.00 0.00 0.00 2.66
723 1365 9.522804 GTATGTTTGAAATGTTTTGTACTTCCA 57.477 29.630 0.00 0.00 0.00 3.53
776 1436 8.499288 AAGAAACTAAATTTTGGGAATGGGTA 57.501 30.769 0.00 0.00 0.00 3.69
787 1447 1.230324 GAATGGGTAAGAGATGCGCC 58.770 55.000 4.18 0.00 0.00 6.53
847 1513 1.302832 GTGGACCAGCACAAGAGGG 60.303 63.158 0.00 0.00 0.00 4.30
849 1515 2.431683 GACCAGCACAAGAGGGCA 59.568 61.111 0.00 0.00 0.00 5.36
854 1520 0.607217 CAGCACAAGAGGGCACATGA 60.607 55.000 0.00 0.00 0.00 3.07
987 1653 1.532794 CCCTCCTCTCATCCCCTCG 60.533 68.421 0.00 0.00 0.00 4.63
1118 1784 4.011517 GTTCCTCCCGCGGGTGAA 62.012 66.667 40.42 36.42 36.47 3.18
1423 2107 2.166459 CCCTGCTCTGTTTCTGACGATA 59.834 50.000 0.00 0.00 0.00 2.92
1425 2109 3.129462 CCTGCTCTGTTTCTGACGATAGA 59.871 47.826 0.00 0.00 41.38 1.98
1430 2114 5.458452 GCTCTGTTTCTGACGATAGATTCTG 59.542 44.000 0.00 0.00 41.38 3.02
1431 2115 6.516739 TCTGTTTCTGACGATAGATTCTGT 57.483 37.500 0.00 0.00 41.38 3.41
1432 2116 6.325596 TCTGTTTCTGACGATAGATTCTGTG 58.674 40.000 0.00 0.00 41.38 3.66
1433 2117 4.864806 TGTTTCTGACGATAGATTCTGTGC 59.135 41.667 0.00 0.00 41.38 4.57
1434 2118 3.340337 TCTGACGATAGATTCTGTGCG 57.660 47.619 0.00 0.18 41.38 5.34
1435 2119 2.033424 TCTGACGATAGATTCTGTGCGG 59.967 50.000 0.00 0.00 41.38 5.69
1436 2120 1.132588 GACGATAGATTCTGTGCGGC 58.867 55.000 0.00 0.00 41.38 6.53
1437 2121 0.595053 ACGATAGATTCTGTGCGGCG 60.595 55.000 0.51 0.51 41.38 6.46
1438 2122 1.856012 GATAGATTCTGTGCGGCGC 59.144 57.895 27.44 27.44 0.00 6.53
1439 2123 1.880601 GATAGATTCTGTGCGGCGCG 61.881 60.000 28.09 13.46 0.00 6.86
1440 2124 2.629050 ATAGATTCTGTGCGGCGCGT 62.629 55.000 28.09 8.39 0.00 6.01
1441 2125 4.505217 GATTCTGTGCGGCGCGTG 62.505 66.667 28.09 18.81 0.00 5.34
1577 2261 2.514013 CGACGCCGTCAAGTATGCC 61.514 63.158 18.40 0.00 32.09 4.40
1578 2262 2.508439 ACGCCGTCAAGTATGCCG 60.508 61.111 0.00 0.00 0.00 5.69
1626 2310 3.692406 GGGGACCGAGCGTGAAGT 61.692 66.667 0.00 0.00 40.86 3.01
1633 2346 1.531149 ACCGAGCGTGAAGTTTTGATG 59.469 47.619 0.00 0.00 0.00 3.07
1769 2482 3.160269 GGGGGTGATCATTCATTCCATC 58.840 50.000 0.00 0.00 33.56 3.51
1770 2483 3.181425 GGGGGTGATCATTCATTCCATCT 60.181 47.826 0.00 0.00 33.56 2.90
1772 2485 4.077822 GGGTGATCATTCATTCCATCTCC 58.922 47.826 0.00 0.00 33.56 3.71
1782 2512 5.350504 TCATTCCATCTCCTCTGTTCTTC 57.649 43.478 0.00 0.00 0.00 2.87
1795 2525 1.760613 TGTTCTTCGGTTGGTCAGAGT 59.239 47.619 0.00 0.00 0.00 3.24
1824 2562 3.397482 CCGATGATCCTGAATTCCTGTC 58.603 50.000 2.27 0.00 0.00 3.51
1826 2564 4.281941 CCGATGATCCTGAATTCCTGTCTA 59.718 45.833 2.27 0.00 0.00 2.59
1827 2565 5.226396 CGATGATCCTGAATTCCTGTCTAC 58.774 45.833 2.27 0.00 0.00 2.59
1828 2566 4.655762 TGATCCTGAATTCCTGTCTACG 57.344 45.455 2.27 0.00 0.00 3.51
1829 2567 2.961526 TCCTGAATTCCTGTCTACGC 57.038 50.000 2.27 0.00 0.00 4.42
1830 2568 2.457598 TCCTGAATTCCTGTCTACGCT 58.542 47.619 2.27 0.00 0.00 5.07
1831 2569 2.166459 TCCTGAATTCCTGTCTACGCTG 59.834 50.000 2.27 0.00 0.00 5.18
1832 2570 2.093973 CCTGAATTCCTGTCTACGCTGT 60.094 50.000 2.27 0.00 0.00 4.40
1987 2725 4.228317 GAGTGGTTCTTCGACAGTAAGTC 58.772 47.826 0.00 0.00 44.02 3.01
2004 2742 8.160106 ACAGTAAGTCAAAATCATTCTTCCTCT 58.840 33.333 0.00 0.00 0.00 3.69
2009 2747 8.961294 AGTCAAAATCATTCTTCCTCTATCAG 57.039 34.615 0.00 0.00 0.00 2.90
2010 2748 8.547173 AGTCAAAATCATTCTTCCTCTATCAGT 58.453 33.333 0.00 0.00 0.00 3.41
2011 2749 8.610896 GTCAAAATCATTCTTCCTCTATCAGTG 58.389 37.037 0.00 0.00 0.00 3.66
2012 2750 8.542926 TCAAAATCATTCTTCCTCTATCAGTGA 58.457 33.333 0.00 0.00 0.00 3.41
2013 2751 8.610896 CAAAATCATTCTTCCTCTATCAGTGAC 58.389 37.037 0.00 0.00 0.00 3.67
2014 2752 7.673641 AATCATTCTTCCTCTATCAGTGACT 57.326 36.000 0.00 0.00 0.00 3.41
2015 2753 8.774546 AATCATTCTTCCTCTATCAGTGACTA 57.225 34.615 0.00 0.00 0.00 2.59
2016 2754 8.774546 ATCATTCTTCCTCTATCAGTGACTAA 57.225 34.615 0.00 0.00 0.00 2.24
2017 2755 8.774546 TCATTCTTCCTCTATCAGTGACTAAT 57.225 34.615 0.00 0.00 0.00 1.73
2018 2756 8.855110 TCATTCTTCCTCTATCAGTGACTAATC 58.145 37.037 0.00 0.00 0.00 1.75
2019 2757 8.637099 CATTCTTCCTCTATCAGTGACTAATCA 58.363 37.037 0.00 0.00 0.00 2.57
2034 2772 7.792374 TGACTAATCACTTAATCATTCAGCC 57.208 36.000 0.00 0.00 0.00 4.85
2035 2773 7.568349 TGACTAATCACTTAATCATTCAGCCT 58.432 34.615 0.00 0.00 0.00 4.58
2036 2774 7.712639 TGACTAATCACTTAATCATTCAGCCTC 59.287 37.037 0.00 0.00 0.00 4.70
2037 2775 5.998454 AATCACTTAATCATTCAGCCTCG 57.002 39.130 0.00 0.00 0.00 4.63
2038 2776 4.736126 TCACTTAATCATTCAGCCTCGA 57.264 40.909 0.00 0.00 0.00 4.04
2039 2777 5.282055 TCACTTAATCATTCAGCCTCGAT 57.718 39.130 0.00 0.00 0.00 3.59
2040 2778 5.292765 TCACTTAATCATTCAGCCTCGATC 58.707 41.667 0.00 0.00 0.00 3.69
2041 2779 5.052481 CACTTAATCATTCAGCCTCGATCA 58.948 41.667 0.00 0.00 0.00 2.92
2042 2780 5.177142 CACTTAATCATTCAGCCTCGATCAG 59.823 44.000 0.00 0.00 0.00 2.90
2043 2781 3.834489 AATCATTCAGCCTCGATCAGT 57.166 42.857 0.00 0.00 0.00 3.41
2044 2782 2.591571 TCATTCAGCCTCGATCAGTG 57.408 50.000 0.00 0.00 0.00 3.66
2045 2783 2.102578 TCATTCAGCCTCGATCAGTGA 58.897 47.619 0.00 0.00 0.00 3.41
2046 2784 2.159184 TCATTCAGCCTCGATCAGTGAC 60.159 50.000 0.00 0.00 0.00 3.67
2047 2785 0.532573 TTCAGCCTCGATCAGTGACC 59.467 55.000 0.00 0.00 0.00 4.02
2048 2786 0.611896 TCAGCCTCGATCAGTGACCA 60.612 55.000 0.00 0.00 0.00 4.02
2049 2787 0.247460 CAGCCTCGATCAGTGACCAA 59.753 55.000 0.00 0.00 0.00 3.67
2050 2788 0.976641 AGCCTCGATCAGTGACCAAA 59.023 50.000 0.00 0.00 0.00 3.28
2055 2793 2.476619 CTCGATCAGTGACCAAACACAC 59.523 50.000 0.00 0.00 42.45 3.82
2063 2801 6.502652 TCAGTGACCAAACACACATTAATTG 58.497 36.000 0.00 0.00 42.45 2.32
2064 2802 6.319911 TCAGTGACCAAACACACATTAATTGA 59.680 34.615 0.00 0.00 42.45 2.57
2065 2803 6.638063 CAGTGACCAAACACACATTAATTGAG 59.362 38.462 0.00 1.10 42.45 3.02
2066 2804 6.545666 AGTGACCAAACACACATTAATTGAGA 59.454 34.615 0.00 0.00 42.45 3.27
2078 2840 8.824781 ACACATTAATTGAGATCTTCGATTGAG 58.175 33.333 0.00 0.89 39.69 3.02
2085 2847 8.728337 ATTGAGATCTTCGATTGAGATTGAAA 57.272 30.769 0.00 0.00 35.69 2.69
2086 2848 8.728337 TTGAGATCTTCGATTGAGATTGAAAT 57.272 30.769 0.00 0.00 35.69 2.17
2442 3204 3.568000 TCCGTCATGGATTGGTTGG 57.432 52.632 0.00 0.00 43.74 3.77
2723 3485 1.141657 ACACAGCCGCCTGATTATCAT 59.858 47.619 0.00 0.00 41.77 2.45
2724 3486 2.368548 ACACAGCCGCCTGATTATCATA 59.631 45.455 0.00 0.00 41.77 2.15
2725 3487 2.738846 CACAGCCGCCTGATTATCATAC 59.261 50.000 0.00 0.00 41.77 2.39
2726 3488 2.368548 ACAGCCGCCTGATTATCATACA 59.631 45.455 0.00 0.00 41.77 2.29
2770 3532 6.703607 AGCACATCTAATTATGTTCGGAGAAG 59.296 38.462 0.00 0.00 45.90 2.85
2772 3534 6.479990 CACATCTAATTATGTTCGGAGAAGCA 59.520 38.462 0.00 0.00 45.90 3.91
2778 3540 9.226345 CTAATTATGTTCGGAGAAGCAATTTTC 57.774 33.333 0.00 0.00 45.90 2.29
2888 3653 9.878667 TCCGTTGTGATTATTTTATACAGAAGA 57.121 29.630 0.00 0.00 0.00 2.87
3025 3794 8.492673 AAAATTACTCGCTGATCAAATGAGTA 57.507 30.769 19.59 19.59 40.22 2.59
3026 3795 8.668510 AAATTACTCGCTGATCAAATGAGTAT 57.331 30.769 22.15 12.20 40.64 2.12
3027 3796 9.764363 AAATTACTCGCTGATCAAATGAGTATA 57.236 29.630 22.15 16.31 40.64 1.47
3028 3797 9.764363 AATTACTCGCTGATCAAATGAGTATAA 57.236 29.630 22.15 15.24 40.64 0.98
3029 3798 8.575565 TTACTCGCTGATCAAATGAGTATAAC 57.424 34.615 22.15 0.00 40.64 1.89
3030 3799 6.810911 ACTCGCTGATCAAATGAGTATAACT 58.189 36.000 17.77 0.00 38.09 2.24
3031 3800 6.920758 ACTCGCTGATCAAATGAGTATAACTC 59.079 38.462 17.77 0.01 45.26 3.01
3048 3817 9.931698 AGTATAACTCAATACCCCGATATATGA 57.068 33.333 0.00 0.00 33.58 2.15
3050 3819 5.599999 ACTCAATACCCCGATATATGAGC 57.400 43.478 0.00 0.00 0.00 4.26
3051 3820 4.098044 ACTCAATACCCCGATATATGAGCG 59.902 45.833 0.00 0.00 36.47 5.03
3052 3821 4.021229 TCAATACCCCGATATATGAGCGT 58.979 43.478 0.00 0.00 34.28 5.07
3053 3822 4.097437 TCAATACCCCGATATATGAGCGTC 59.903 45.833 0.00 0.00 34.28 5.19
3054 3823 1.183549 ACCCCGATATATGAGCGTCC 58.816 55.000 0.00 0.00 34.28 4.79
3055 3824 1.272536 ACCCCGATATATGAGCGTCCT 60.273 52.381 0.00 0.00 34.28 3.85
3056 3825 1.405821 CCCCGATATATGAGCGTCCTC 59.594 57.143 0.00 0.00 34.28 3.71
3057 3826 2.370349 CCCGATATATGAGCGTCCTCT 58.630 52.381 0.00 0.00 38.93 3.69
3058 3827 3.542648 CCCGATATATGAGCGTCCTCTA 58.457 50.000 0.00 0.00 38.93 2.43
3059 3828 4.138290 CCCGATATATGAGCGTCCTCTAT 58.862 47.826 0.00 0.00 38.93 1.98
3060 3829 4.580995 CCCGATATATGAGCGTCCTCTATT 59.419 45.833 0.00 0.00 38.93 1.73
3061 3830 5.067936 CCCGATATATGAGCGTCCTCTATTT 59.932 44.000 0.00 0.00 38.93 1.40
3062 3831 6.202937 CCGATATATGAGCGTCCTCTATTTC 58.797 44.000 0.00 0.00 38.93 2.17
3125 3935 2.355756 GCTGATCACGTTGCCACATATT 59.644 45.455 0.00 0.00 0.00 1.28
3126 3936 3.181497 GCTGATCACGTTGCCACATATTT 60.181 43.478 0.00 0.00 0.00 1.40
3132 3942 6.751514 TCACGTTGCCACATATTTTTCTAT 57.248 33.333 0.00 0.00 0.00 1.98
3138 3948 4.099266 TGCCACATATTTTTCTATGCACCC 59.901 41.667 0.00 0.00 33.26 4.61
3144 3954 2.489938 TTTTCTATGCACCCTCGCTT 57.510 45.000 0.00 0.00 0.00 4.68
3155 3965 0.389391 CCCTCGCTTATGATGGACGT 59.611 55.000 0.00 0.00 0.00 4.34
3263 4073 5.558653 CGTGCAAGGGAATGTTGAAATTTTG 60.559 40.000 0.00 0.00 0.00 2.44
3324 4134 0.826715 GGCATGGAGCTCACTACTCA 59.173 55.000 17.19 3.06 44.79 3.41
3329 4139 3.037851 TGGAGCTCACTACTCATCCAT 57.962 47.619 17.19 0.00 35.79 3.41
3333 4143 4.383552 GGAGCTCACTACTCATCCATTGTT 60.384 45.833 17.19 0.00 35.79 2.83
3609 4427 8.090214 CACCAGAAAATAAAGAAACACCATGAT 58.910 33.333 0.00 0.00 0.00 2.45
3623 4441 4.655649 ACACCATGATAGCTACAAGGATGA 59.344 41.667 18.32 0.00 31.67 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.978010 CGCTGCTCCCGTGGTTTT 60.978 61.111 0.00 0.00 0.00 2.43
21 22 3.492311 GAGCGCTAGCCTTCTCGGG 62.492 68.421 11.50 0.00 46.67 5.14
22 23 2.026879 GAGCGCTAGCCTTCTCGG 59.973 66.667 11.50 0.00 46.67 4.63
23 24 2.352915 CGAGCGCTAGCCTTCTCG 60.353 66.667 24.39 24.39 46.67 4.04
24 25 1.298788 GACGAGCGCTAGCCTTCTC 60.299 63.158 18.02 12.00 46.67 2.87
25 26 1.388065 ATGACGAGCGCTAGCCTTCT 61.388 55.000 18.02 3.70 46.67 2.85
26 27 1.066587 ATGACGAGCGCTAGCCTTC 59.933 57.895 18.02 8.47 46.67 3.46
27 28 1.227089 CATGACGAGCGCTAGCCTT 60.227 57.895 18.02 1.52 46.67 4.35
28 29 1.667154 TTCATGACGAGCGCTAGCCT 61.667 55.000 18.02 7.31 46.67 4.58
29 30 1.211818 CTTCATGACGAGCGCTAGCC 61.212 60.000 18.02 7.23 46.67 3.93
30 31 1.816214 GCTTCATGACGAGCGCTAGC 61.816 60.000 18.02 13.01 45.58 3.42
31 32 1.211818 GGCTTCATGACGAGCGCTAG 61.212 60.000 11.50 14.42 0.00 3.42
32 33 1.226974 GGCTTCATGACGAGCGCTA 60.227 57.895 11.50 0.00 0.00 4.26
33 34 2.510238 GGCTTCATGACGAGCGCT 60.510 61.111 11.27 11.27 0.00 5.92
34 35 2.510238 AGGCTTCATGACGAGCGC 60.510 61.111 12.18 0.00 0.00 5.92
35 36 2.806856 GCAGGCTTCATGACGAGCG 61.807 63.158 12.18 2.50 0.00 5.03
36 37 1.742880 TGCAGGCTTCATGACGAGC 60.743 57.895 10.41 10.41 0.00 5.03
37 38 1.690283 CGTGCAGGCTTCATGACGAG 61.690 60.000 2.89 0.00 0.00 4.18
38 39 1.737735 CGTGCAGGCTTCATGACGA 60.738 57.895 2.89 0.00 0.00 4.20
39 40 2.780643 CGTGCAGGCTTCATGACG 59.219 61.111 0.00 0.00 0.00 4.35
40 41 2.482374 GCGTGCAGGCTTCATGAC 59.518 61.111 23.51 0.00 0.00 3.06
41 42 3.120385 CGCGTGCAGGCTTCATGA 61.120 61.111 27.01 0.00 0.00 3.07
42 43 4.824166 GCGCGTGCAGGCTTCATG 62.824 66.667 27.01 13.44 42.15 3.07
49 50 4.817063 CCAAATCGCGCGTGCAGG 62.817 66.667 30.98 22.53 42.97 4.85
50 51 3.099619 ATCCAAATCGCGCGTGCAG 62.100 57.895 30.98 17.75 42.97 4.41
51 52 3.124270 ATCCAAATCGCGCGTGCA 61.124 55.556 30.98 11.59 42.97 4.57
52 53 2.648724 CATCCAAATCGCGCGTGC 60.649 61.111 30.98 11.84 37.91 5.34
53 54 2.648724 GCATCCAAATCGCGCGTG 60.649 61.111 30.98 20.61 0.00 5.34
54 55 1.992233 ATTGCATCCAAATCGCGCGT 61.992 50.000 30.98 14.63 34.05 6.01
55 56 0.866906 AATTGCATCCAAATCGCGCG 60.867 50.000 26.76 26.76 34.05 6.86
56 57 2.118228 TAATTGCATCCAAATCGCGC 57.882 45.000 0.00 0.00 34.05 6.86
57 58 3.951306 TCTTAATTGCATCCAAATCGCG 58.049 40.909 0.00 0.00 34.05 5.87
58 59 3.732721 GCTCTTAATTGCATCCAAATCGC 59.267 43.478 0.00 0.00 34.05 4.58
59 60 4.923893 TGCTCTTAATTGCATCCAAATCG 58.076 39.130 0.00 0.00 34.05 3.34
60 61 7.042254 GGATTTGCTCTTAATTGCATCCAAATC 60.042 37.037 17.84 17.84 42.88 2.17
61 62 6.764560 GGATTTGCTCTTAATTGCATCCAAAT 59.235 34.615 13.26 0.00 37.92 2.32
62 63 6.108015 GGATTTGCTCTTAATTGCATCCAAA 58.892 36.000 13.26 0.00 37.92 3.28
63 64 5.663456 GGATTTGCTCTTAATTGCATCCAA 58.337 37.500 13.26 4.03 37.92 3.53
64 65 4.202040 CGGATTTGCTCTTAATTGCATCCA 60.202 41.667 16.13 3.21 37.90 3.41
65 66 4.036734 TCGGATTTGCTCTTAATTGCATCC 59.963 41.667 10.20 10.20 39.07 3.51
66 67 5.173774 TCGGATTTGCTCTTAATTGCATC 57.826 39.130 3.83 0.85 39.07 3.91
67 68 5.508489 CCATCGGATTTGCTCTTAATTGCAT 60.508 40.000 3.83 0.00 39.07 3.96
68 69 4.202040 CCATCGGATTTGCTCTTAATTGCA 60.202 41.667 0.00 0.00 37.42 4.08
69 70 4.293415 CCATCGGATTTGCTCTTAATTGC 58.707 43.478 0.00 0.00 0.00 3.56
70 71 4.293415 GCCATCGGATTTGCTCTTAATTG 58.707 43.478 2.78 0.00 0.00 2.32
71 72 3.319122 GGCCATCGGATTTGCTCTTAATT 59.681 43.478 0.00 0.00 0.00 1.40
72 73 2.887152 GGCCATCGGATTTGCTCTTAAT 59.113 45.455 0.00 0.00 0.00 1.40
73 74 2.297701 GGCCATCGGATTTGCTCTTAA 58.702 47.619 0.00 0.00 0.00 1.85
74 75 1.211703 TGGCCATCGGATTTGCTCTTA 59.788 47.619 0.00 0.00 0.00 2.10
75 76 0.034186 TGGCCATCGGATTTGCTCTT 60.034 50.000 0.00 0.00 0.00 2.85
76 77 0.034186 TTGGCCATCGGATTTGCTCT 60.034 50.000 6.09 0.00 0.00 4.09
77 78 0.817013 TTTGGCCATCGGATTTGCTC 59.183 50.000 6.09 1.83 0.00 4.26
78 79 1.265236 TTTTGGCCATCGGATTTGCT 58.735 45.000 6.09 0.00 0.00 3.91
79 80 1.731709 GTTTTTGGCCATCGGATTTGC 59.268 47.619 6.09 1.55 0.00 3.68
80 81 1.991965 CGTTTTTGGCCATCGGATTTG 59.008 47.619 6.09 0.00 0.00 2.32
81 82 1.889829 TCGTTTTTGGCCATCGGATTT 59.110 42.857 6.09 0.00 0.00 2.17
82 83 1.201414 GTCGTTTTTGGCCATCGGATT 59.799 47.619 6.09 0.00 0.00 3.01
83 84 0.808755 GTCGTTTTTGGCCATCGGAT 59.191 50.000 6.09 0.00 0.00 4.18
84 85 0.250553 AGTCGTTTTTGGCCATCGGA 60.251 50.000 6.09 0.00 0.00 4.55
85 86 1.444836 TAGTCGTTTTTGGCCATCGG 58.555 50.000 6.09 0.00 0.00 4.18
86 87 3.546002 TTTAGTCGTTTTTGGCCATCG 57.454 42.857 6.09 10.02 0.00 3.84
87 88 4.679654 CACTTTTAGTCGTTTTTGGCCATC 59.320 41.667 6.09 0.00 0.00 3.51
88 89 4.339814 TCACTTTTAGTCGTTTTTGGCCAT 59.660 37.500 6.09 0.00 0.00 4.40
89 90 3.695060 TCACTTTTAGTCGTTTTTGGCCA 59.305 39.130 0.00 0.00 0.00 5.36
90 91 4.039703 GTCACTTTTAGTCGTTTTTGGCC 58.960 43.478 0.00 0.00 0.00 5.36
91 92 3.722289 CGTCACTTTTAGTCGTTTTTGGC 59.278 43.478 0.00 0.00 0.00 4.52
92 93 5.146482 TCGTCACTTTTAGTCGTTTTTGG 57.854 39.130 0.00 0.00 0.00 3.28
93 94 5.844396 GGATCGTCACTTTTAGTCGTTTTTG 59.156 40.000 0.00 0.00 0.00 2.44
94 95 5.524646 TGGATCGTCACTTTTAGTCGTTTTT 59.475 36.000 0.00 0.00 0.00 1.94
95 96 5.051816 TGGATCGTCACTTTTAGTCGTTTT 58.948 37.500 0.00 0.00 0.00 2.43
96 97 4.624015 TGGATCGTCACTTTTAGTCGTTT 58.376 39.130 0.00 0.00 0.00 3.60
97 98 4.247267 TGGATCGTCACTTTTAGTCGTT 57.753 40.909 0.00 0.00 0.00 3.85
98 99 3.928727 TGGATCGTCACTTTTAGTCGT 57.071 42.857 0.00 0.00 0.00 4.34
99 100 3.059044 CGTTGGATCGTCACTTTTAGTCG 59.941 47.826 0.00 0.00 0.00 4.18
100 101 4.232221 TCGTTGGATCGTCACTTTTAGTC 58.768 43.478 0.00 0.00 0.00 2.59
101 102 4.247267 TCGTTGGATCGTCACTTTTAGT 57.753 40.909 0.00 0.00 0.00 2.24
102 103 5.779806 AATCGTTGGATCGTCACTTTTAG 57.220 39.130 0.00 0.00 30.81 1.85
103 104 7.655236 TTTAATCGTTGGATCGTCACTTTTA 57.345 32.000 0.00 0.00 30.81 1.52
104 105 6.548441 TTTAATCGTTGGATCGTCACTTTT 57.452 33.333 0.00 0.00 30.81 2.27
105 106 6.548441 TTTTAATCGTTGGATCGTCACTTT 57.452 33.333 0.00 0.00 30.81 2.66
106 107 6.548441 TTTTTAATCGTTGGATCGTCACTT 57.452 33.333 0.00 0.00 30.81 3.16
107 108 6.542852 CATTTTTAATCGTTGGATCGTCACT 58.457 36.000 0.00 0.00 30.81 3.41
108 109 5.227184 GCATTTTTAATCGTTGGATCGTCAC 59.773 40.000 0.00 0.00 30.81 3.67
109 110 5.123186 AGCATTTTTAATCGTTGGATCGTCA 59.877 36.000 0.00 0.00 30.81 4.35
110 111 5.452302 CAGCATTTTTAATCGTTGGATCGTC 59.548 40.000 0.00 0.00 30.81 4.20
111 112 5.123186 TCAGCATTTTTAATCGTTGGATCGT 59.877 36.000 0.00 0.00 30.81 3.73
112 113 5.568482 TCAGCATTTTTAATCGTTGGATCG 58.432 37.500 0.00 0.00 30.81 3.69
113 114 6.418819 CCATCAGCATTTTTAATCGTTGGATC 59.581 38.462 0.00 0.00 30.81 3.36
114 115 6.275335 CCATCAGCATTTTTAATCGTTGGAT 58.725 36.000 0.00 0.00 0.00 3.41
115 116 5.649557 CCATCAGCATTTTTAATCGTTGGA 58.350 37.500 0.00 0.00 0.00 3.53
116 117 4.268405 GCCATCAGCATTTTTAATCGTTGG 59.732 41.667 0.00 0.00 42.97 3.77
117 118 5.379757 GCCATCAGCATTTTTAATCGTTG 57.620 39.130 0.00 0.00 42.97 4.10
131 132 0.182299 AGCCCTCTTAAGCCATCAGC 59.818 55.000 0.00 0.00 44.25 4.26
132 133 1.476471 CCAGCCCTCTTAAGCCATCAG 60.476 57.143 0.00 0.00 0.00 2.90
133 134 0.548031 CCAGCCCTCTTAAGCCATCA 59.452 55.000 0.00 0.00 0.00 3.07
134 135 0.179006 CCCAGCCCTCTTAAGCCATC 60.179 60.000 0.00 0.00 0.00 3.51
135 136 0.624500 TCCCAGCCCTCTTAAGCCAT 60.625 55.000 0.00 0.00 0.00 4.40
136 137 1.229820 TCCCAGCCCTCTTAAGCCA 60.230 57.895 0.00 0.00 0.00 4.75
137 138 1.529309 CTCCCAGCCCTCTTAAGCC 59.471 63.158 0.00 0.00 0.00 4.35
138 139 1.529309 CCTCCCAGCCCTCTTAAGC 59.471 63.158 0.00 0.00 0.00 3.09
139 140 0.621862 ACCCTCCCAGCCCTCTTAAG 60.622 60.000 0.00 0.00 0.00 1.85
140 141 0.914417 CACCCTCCCAGCCCTCTTAA 60.914 60.000 0.00 0.00 0.00 1.85
141 142 1.306997 CACCCTCCCAGCCCTCTTA 60.307 63.158 0.00 0.00 0.00 2.10
142 143 2.612115 CACCCTCCCAGCCCTCTT 60.612 66.667 0.00 0.00 0.00 2.85
147 148 4.106925 CTGAGCACCCTCCCAGCC 62.107 72.222 0.00 0.00 37.29 4.85
148 149 2.417558 AAACTGAGCACCCTCCCAGC 62.418 60.000 0.00 0.00 37.29 4.85
149 150 0.111253 AAAACTGAGCACCCTCCCAG 59.889 55.000 0.00 0.00 37.29 4.45
150 151 1.440618 TAAAACTGAGCACCCTCCCA 58.559 50.000 0.00 0.00 37.29 4.37
151 152 2.579410 TTAAAACTGAGCACCCTCCC 57.421 50.000 0.00 0.00 37.29 4.30
152 153 7.454225 AGATATATTAAAACTGAGCACCCTCC 58.546 38.462 0.00 0.00 37.29 4.30
153 154 9.998106 TTAGATATATTAAAACTGAGCACCCTC 57.002 33.333 0.00 0.00 38.62 4.30
172 173 9.866655 TTGACTGCCATTTTCCTATTTAGATAT 57.133 29.630 0.00 0.00 0.00 1.63
173 174 9.693739 TTTGACTGCCATTTTCCTATTTAGATA 57.306 29.630 0.00 0.00 0.00 1.98
174 175 8.593945 TTTGACTGCCATTTTCCTATTTAGAT 57.406 30.769 0.00 0.00 0.00 1.98
175 176 7.669722 ACTTTGACTGCCATTTTCCTATTTAGA 59.330 33.333 0.00 0.00 0.00 2.10
176 177 7.756722 CACTTTGACTGCCATTTTCCTATTTAG 59.243 37.037 0.00 0.00 0.00 1.85
177 178 7.601856 CACTTTGACTGCCATTTTCCTATTTA 58.398 34.615 0.00 0.00 0.00 1.40
178 179 6.458210 CACTTTGACTGCCATTTTCCTATTT 58.542 36.000 0.00 0.00 0.00 1.40
179 180 5.567423 GCACTTTGACTGCCATTTTCCTATT 60.567 40.000 0.00 0.00 0.00 1.73
180 181 4.082026 GCACTTTGACTGCCATTTTCCTAT 60.082 41.667 0.00 0.00 0.00 2.57
184 185 2.053627 CGCACTTTGACTGCCATTTTC 58.946 47.619 0.00 0.00 0.00 2.29
217 218 3.153919 ACACATAACAATGAGCCCGTTT 58.846 40.909 0.00 0.00 0.00 3.60
221 222 6.699575 AAATAGACACATAACAATGAGCCC 57.300 37.500 0.00 0.00 0.00 5.19
249 250 3.761752 ACCATTGAACATAGAAAACCCCG 59.238 43.478 0.00 0.00 0.00 5.73
308 309 0.453950 GTCAGAGCGTCGCGAGTAAA 60.454 55.000 10.24 0.00 0.00 2.01
309 310 1.134075 GTCAGAGCGTCGCGAGTAA 59.866 57.895 10.24 0.00 0.00 2.24
311 312 3.315769 CTGTCAGAGCGTCGCGAGT 62.316 63.158 10.24 0.00 0.00 4.18
312 313 2.316361 ATCTGTCAGAGCGTCGCGAG 62.316 60.000 10.24 4.96 0.00 5.03
313 314 1.087771 TATCTGTCAGAGCGTCGCGA 61.088 55.000 12.30 3.71 0.00 5.87
314 315 0.655915 CTATCTGTCAGAGCGTCGCG 60.656 60.000 12.30 0.00 0.00 5.87
315 316 0.932585 GCTATCTGTCAGAGCGTCGC 60.933 60.000 9.80 9.80 0.00 5.19
316 317 3.156401 GCTATCTGTCAGAGCGTCG 57.844 57.895 8.82 0.00 0.00 5.12
320 960 1.403679 AGTGTCGCTATCTGTCAGAGC 59.596 52.381 8.82 6.36 0.00 4.09
324 964 3.759086 AGAAGAAGTGTCGCTATCTGTCA 59.241 43.478 0.00 0.00 0.00 3.58
328 968 3.690139 TCGAAGAAGAAGTGTCGCTATCT 59.310 43.478 0.00 0.00 33.58 1.98
333 973 4.144555 CAAAATCGAAGAAGAAGTGTCGC 58.855 43.478 0.00 0.00 43.58 5.19
334 974 5.175856 AGACAAAATCGAAGAAGAAGTGTCG 59.824 40.000 0.00 0.00 43.58 4.35
336 976 6.927294 AAGACAAAATCGAAGAAGAAGTGT 57.073 33.333 0.00 0.00 43.58 3.55
338 978 7.931948 TCCTAAAGACAAAATCGAAGAAGAAGT 59.068 33.333 0.00 0.00 43.58 3.01
355 995 7.545489 TCTAGGAAAATCGAAGTCCTAAAGAC 58.455 38.462 17.82 0.00 42.19 3.01
361 1001 5.393243 CGAACTCTAGGAAAATCGAAGTCCT 60.393 44.000 16.43 16.43 44.17 3.85
364 1004 5.388408 ACGAACTCTAGGAAAATCGAAGT 57.612 39.130 0.00 0.00 34.62 3.01
367 1007 4.083110 ACGAACGAACTCTAGGAAAATCGA 60.083 41.667 0.14 0.00 34.62 3.59
373 1013 1.466167 CGGACGAACGAACTCTAGGAA 59.534 52.381 0.14 0.00 35.47 3.36
375 1015 0.098376 CCGGACGAACGAACTCTAGG 59.902 60.000 0.00 0.00 35.47 3.02
378 1018 1.578423 GTCCGGACGAACGAACTCT 59.422 57.895 20.85 0.00 35.47 3.24
392 1032 1.009900 GCTCCATCGACTACGTCCG 60.010 63.158 0.00 0.00 40.69 4.79
410 1050 2.494918 CAGGAACCTACGCCGGAG 59.505 66.667 5.05 3.72 0.00 4.63
421 1061 0.322008 CCCAAGGAGACAGCAGGAAC 60.322 60.000 0.00 0.00 0.00 3.62
427 1067 0.951040 CGTTGTCCCAAGGAGACAGC 60.951 60.000 11.64 11.64 44.60 4.40
428 1068 0.679505 TCGTTGTCCCAAGGAGACAG 59.320 55.000 9.36 2.46 44.60 3.51
434 1074 2.423577 CCTAACTTCGTTGTCCCAAGG 58.576 52.381 0.00 0.00 0.00 3.61
443 1083 3.068590 TGACGAGAAACCCTAACTTCGTT 59.931 43.478 0.00 0.00 32.59 3.85
448 1088 3.323979 ACACATGACGAGAAACCCTAACT 59.676 43.478 0.00 0.00 0.00 2.24
470 1110 1.691976 ACACCTGACACCAAATCTCGA 59.308 47.619 0.00 0.00 0.00 4.04
473 1114 2.878406 CGAAACACCTGACACCAAATCT 59.122 45.455 0.00 0.00 0.00 2.40
494 1135 5.293569 CGTTGTTGAACCCTTGTATAGATCC 59.706 44.000 0.00 0.00 0.00 3.36
507 1148 2.033492 CCGTAGTTGTCGTTGTTGAACC 60.033 50.000 0.00 0.00 0.00 3.62
515 1156 0.390124 TTGGAGCCGTAGTTGTCGTT 59.610 50.000 0.00 0.00 0.00 3.85
534 1175 5.466127 TCCCCTAAGAAACAATAATGCCT 57.534 39.130 0.00 0.00 0.00 4.75
541 1182 2.817844 GCACGTTCCCCTAAGAAACAAT 59.182 45.455 0.00 0.00 0.00 2.71
544 1185 1.534163 GTGCACGTTCCCCTAAGAAAC 59.466 52.381 0.00 0.00 0.00 2.78
545 1186 1.874739 CGTGCACGTTCCCCTAAGAAA 60.875 52.381 30.50 0.00 34.11 2.52
546 1187 0.320073 CGTGCACGTTCCCCTAAGAA 60.320 55.000 30.50 0.00 34.11 2.52
547 1188 1.180456 TCGTGCACGTTCCCCTAAGA 61.180 55.000 35.74 12.39 40.80 2.10
548 1189 0.320073 TTCGTGCACGTTCCCCTAAG 60.320 55.000 35.74 6.92 40.80 2.18
556 1197 0.878961 GGGAAGTCTTCGTGCACGTT 60.879 55.000 35.74 23.61 40.80 3.99
566 1207 2.632996 TCGATGACAGTTGGGAAGTCTT 59.367 45.455 0.00 0.00 33.56 3.01
573 1214 3.118775 TGACCTTATCGATGACAGTTGGG 60.119 47.826 8.54 0.00 0.00 4.12
576 1217 4.504858 GGTTGACCTTATCGATGACAGTT 58.495 43.478 8.54 0.00 0.00 3.16
577 1218 3.428999 CGGTTGACCTTATCGATGACAGT 60.429 47.826 8.54 0.00 0.00 3.55
580 1221 3.114065 GACGGTTGACCTTATCGATGAC 58.886 50.000 8.54 0.00 0.00 3.06
588 1229 4.021719 CCTTACTTGAGACGGTTGACCTTA 60.022 45.833 0.00 0.00 0.00 2.69
591 1232 2.298163 TCCTTACTTGAGACGGTTGACC 59.702 50.000 0.00 0.00 0.00 4.02
600 1241 6.273825 GTTATCATCGCTTCCTTACTTGAGA 58.726 40.000 0.00 0.00 0.00 3.27
606 1247 4.206609 GTGACGTTATCATCGCTTCCTTAC 59.793 45.833 0.00 0.00 40.28 2.34
618 1259 0.455464 CCGCTGACGTGACGTTATCA 60.455 55.000 13.44 4.83 41.37 2.15
628 1269 1.373497 CAGAAAGAGCCGCTGACGT 60.373 57.895 0.00 0.00 37.70 4.34
633 1274 0.106708 TTGTGTCAGAAAGAGCCGCT 59.893 50.000 0.00 0.00 0.00 5.52
663 1305 5.713792 ACATAGATATTCCGAGACCACTG 57.286 43.478 0.00 0.00 0.00 3.66
664 1306 6.544650 ACTACATAGATATTCCGAGACCACT 58.455 40.000 0.00 0.00 0.00 4.00
697 1339 9.522804 TGGAAGTACAAAACATTTCAAACATAC 57.477 29.630 0.00 0.00 0.00 2.39
776 1436 0.107945 GACTCCTTGGCGCATCTCTT 60.108 55.000 10.83 0.00 0.00 2.85
787 1447 5.522460 TCTTAACTTGTGAAACGACTCCTTG 59.478 40.000 0.00 0.00 42.39 3.61
819 1481 0.036022 GCTGGTCCACTGAGCTTCTT 59.964 55.000 0.00 0.00 39.75 2.52
827 1489 0.604780 CCTCTTGTGCTGGTCCACTG 60.605 60.000 0.00 0.00 36.68 3.66
847 1513 1.139654 TGATGGCCTAGAGTCATGTGC 59.860 52.381 3.32 0.00 0.00 4.57
849 1515 2.159043 CGTTGATGGCCTAGAGTCATGT 60.159 50.000 3.32 0.00 0.00 3.21
854 1520 0.824759 GGTCGTTGATGGCCTAGAGT 59.175 55.000 3.32 0.00 0.00 3.24
987 1653 2.501610 GCCATGGAGGAGGACGAC 59.498 66.667 18.40 0.00 41.22 4.34
1323 1992 0.729690 GCGGCTTCTTCATCTTGTCC 59.270 55.000 0.00 0.00 0.00 4.02
1375 2044 1.076533 CCGATCACAAACTCCGACGG 61.077 60.000 7.84 7.84 0.00 4.79
1376 2045 0.109458 TCCGATCACAAACTCCGACG 60.109 55.000 0.00 0.00 0.00 5.12
1423 2107 4.742201 ACGCGCCGCACAGAATCT 62.742 61.111 10.75 0.00 0.00 2.40
1439 2123 3.418068 GTCAGCTCCTGCACGCAC 61.418 66.667 0.00 0.00 42.74 5.34
1441 2125 4.724602 TCGTCAGCTCCTGCACGC 62.725 66.667 10.28 0.00 42.74 5.34
1442 2126 2.505777 CTCGTCAGCTCCTGCACG 60.506 66.667 9.38 9.38 42.74 5.34
1469 2153 1.301479 GTCACCCCACACCGTCTTC 60.301 63.158 0.00 0.00 0.00 2.87
1521 2205 2.050351 CAGCACGACGTCGAAGGT 60.050 61.111 41.52 32.27 43.02 3.50
1615 2299 2.949714 ACATCAAAACTTCACGCTCG 57.050 45.000 0.00 0.00 0.00 5.03
1623 2307 3.616379 CACGCAACCAAACATCAAAACTT 59.384 39.130 0.00 0.00 0.00 2.66
1626 2310 1.929836 GCACGCAACCAAACATCAAAA 59.070 42.857 0.00 0.00 0.00 2.44
1633 2346 2.658268 GCCTGCACGCAACCAAAC 60.658 61.111 2.56 0.00 0.00 2.93
1754 2467 5.867330 ACAGAGGAGATGGAATGAATGATC 58.133 41.667 0.00 0.00 0.00 2.92
1769 2482 1.344763 ACCAACCGAAGAACAGAGGAG 59.655 52.381 0.00 0.00 0.00 3.69
1770 2483 1.343465 GACCAACCGAAGAACAGAGGA 59.657 52.381 0.00 0.00 0.00 3.71
1772 2485 2.035961 TCTGACCAACCGAAGAACAGAG 59.964 50.000 0.00 0.00 0.00 3.35
1782 2512 2.927014 GCTACTCAACTCTGACCAACCG 60.927 54.545 0.00 0.00 0.00 4.44
1795 2525 2.666317 TCAGGATCATCGGCTACTCAA 58.334 47.619 0.00 0.00 0.00 3.02
1824 2562 2.447887 CCTGCGAGCAACAGCGTAG 61.448 63.158 0.00 0.00 39.44 3.51
1826 2564 4.299547 TCCTGCGAGCAACAGCGT 62.300 61.111 0.00 0.00 35.87 5.07
1827 2565 3.782244 GTCCTGCGAGCAACAGCG 61.782 66.667 0.00 0.00 35.87 5.18
1828 2566 3.782244 CGTCCTGCGAGCAACAGC 61.782 66.667 0.00 0.00 44.77 4.40
1829 2567 3.782244 GCGTCCTGCGAGCAACAG 61.782 66.667 0.00 0.00 44.77 3.16
1883 2621 1.299926 GAACTCCGCCGCGATGTAT 60.300 57.895 15.93 3.89 0.00 2.29
1987 2725 8.610896 GTCACTGATAGAGGAAGAATGATTTTG 58.389 37.037 0.00 0.00 0.00 2.44
2010 2748 7.568349 AGGCTGAATGATTAAGTGATTAGTCA 58.432 34.615 0.00 0.00 0.00 3.41
2011 2749 7.095857 CGAGGCTGAATGATTAAGTGATTAGTC 60.096 40.741 0.00 0.00 0.00 2.59
2012 2750 6.703607 CGAGGCTGAATGATTAAGTGATTAGT 59.296 38.462 0.00 0.00 0.00 2.24
2013 2751 6.925718 TCGAGGCTGAATGATTAAGTGATTAG 59.074 38.462 0.00 0.00 0.00 1.73
2014 2752 6.816136 TCGAGGCTGAATGATTAAGTGATTA 58.184 36.000 0.00 0.00 0.00 1.75
2015 2753 5.674525 TCGAGGCTGAATGATTAAGTGATT 58.325 37.500 0.00 0.00 0.00 2.57
2016 2754 5.282055 TCGAGGCTGAATGATTAAGTGAT 57.718 39.130 0.00 0.00 0.00 3.06
2017 2755 4.736126 TCGAGGCTGAATGATTAAGTGA 57.264 40.909 0.00 0.00 0.00 3.41
2018 2756 5.052481 TGATCGAGGCTGAATGATTAAGTG 58.948 41.667 0.00 0.00 0.00 3.16
2019 2757 5.163364 ACTGATCGAGGCTGAATGATTAAGT 60.163 40.000 0.00 0.00 0.00 2.24
2020 2758 5.177142 CACTGATCGAGGCTGAATGATTAAG 59.823 44.000 0.00 0.00 0.00 1.85
2021 2759 5.052481 CACTGATCGAGGCTGAATGATTAA 58.948 41.667 0.00 0.00 0.00 1.40
2022 2760 4.342092 TCACTGATCGAGGCTGAATGATTA 59.658 41.667 0.00 0.00 0.00 1.75
2023 2761 3.133542 TCACTGATCGAGGCTGAATGATT 59.866 43.478 0.00 0.00 0.00 2.57
2024 2762 2.697229 TCACTGATCGAGGCTGAATGAT 59.303 45.455 0.00 0.00 0.00 2.45
2025 2763 2.102578 TCACTGATCGAGGCTGAATGA 58.897 47.619 0.00 0.00 0.00 2.57
2026 2764 2.200067 GTCACTGATCGAGGCTGAATG 58.800 52.381 0.00 0.00 0.00 2.67
2027 2765 1.137872 GGTCACTGATCGAGGCTGAAT 59.862 52.381 0.00 0.00 0.00 2.57
2028 2766 0.532573 GGTCACTGATCGAGGCTGAA 59.467 55.000 0.00 0.00 0.00 3.02
2029 2767 0.611896 TGGTCACTGATCGAGGCTGA 60.612 55.000 0.00 0.00 0.00 4.26
2030 2768 0.247460 TTGGTCACTGATCGAGGCTG 59.753 55.000 0.00 0.00 0.00 4.85
2031 2769 0.976641 TTTGGTCACTGATCGAGGCT 59.023 50.000 0.00 0.00 0.00 4.58
2032 2770 1.079503 GTTTGGTCACTGATCGAGGC 58.920 55.000 0.00 0.00 0.00 4.70
2033 2771 2.069273 GTGTTTGGTCACTGATCGAGG 58.931 52.381 0.00 0.00 35.68 4.63
2034 2772 2.476619 GTGTGTTTGGTCACTGATCGAG 59.523 50.000 0.00 0.00 38.90 4.04
2035 2773 2.159028 TGTGTGTTTGGTCACTGATCGA 60.159 45.455 0.00 0.00 38.90 3.59
2036 2774 2.209273 TGTGTGTTTGGTCACTGATCG 58.791 47.619 0.00 0.00 38.90 3.69
2037 2775 4.836125 AATGTGTGTTTGGTCACTGATC 57.164 40.909 0.00 0.00 38.90 2.92
2038 2776 6.899393 ATTAATGTGTGTTTGGTCACTGAT 57.101 33.333 0.00 0.00 38.90 2.90
2039 2777 6.319911 TCAATTAATGTGTGTTTGGTCACTGA 59.680 34.615 0.00 0.00 38.90 3.41
2040 2778 6.502652 TCAATTAATGTGTGTTTGGTCACTG 58.497 36.000 0.00 0.00 38.90 3.66
2041 2779 6.545666 TCTCAATTAATGTGTGTTTGGTCACT 59.454 34.615 0.00 0.00 38.90 3.41
2042 2780 6.734137 TCTCAATTAATGTGTGTTTGGTCAC 58.266 36.000 0.00 0.00 38.63 3.67
2043 2781 6.951062 TCTCAATTAATGTGTGTTTGGTCA 57.049 33.333 0.00 0.00 0.00 4.02
2044 2782 7.820648 AGATCTCAATTAATGTGTGTTTGGTC 58.179 34.615 0.00 0.00 0.00 4.02
2045 2783 7.765695 AGATCTCAATTAATGTGTGTTTGGT 57.234 32.000 0.00 0.00 0.00 3.67
2046 2784 7.482743 CGAAGATCTCAATTAATGTGTGTTTGG 59.517 37.037 0.00 0.00 0.00 3.28
2047 2785 8.229811 TCGAAGATCTCAATTAATGTGTGTTTG 58.770 33.333 0.00 0.00 0.00 2.93
2048 2786 8.322906 TCGAAGATCTCAATTAATGTGTGTTT 57.677 30.769 0.00 0.00 0.00 2.83
2049 2787 7.905604 TCGAAGATCTCAATTAATGTGTGTT 57.094 32.000 0.00 0.00 0.00 3.32
2050 2788 8.393366 CAATCGAAGATCTCAATTAATGTGTGT 58.607 33.333 0.00 0.00 45.12 3.72
2063 2801 8.824781 TCAATTTCAATCTCAATCGAAGATCTC 58.175 33.333 0.00 0.00 45.12 2.75
2064 2802 8.728337 TCAATTTCAATCTCAATCGAAGATCT 57.272 30.769 0.00 0.00 45.12 2.75
2065 2803 9.778993 TTTCAATTTCAATCTCAATCGAAGATC 57.221 29.630 0.00 0.00 45.12 2.75
2078 2840 7.464977 CGATTCCTGCCAATTTCAATTTCAATC 60.465 37.037 0.00 0.00 0.00 2.67
2081 2843 5.170021 CGATTCCTGCCAATTTCAATTTCA 58.830 37.500 0.00 0.00 0.00 2.69
2082 2844 5.062558 CACGATTCCTGCCAATTTCAATTTC 59.937 40.000 0.00 0.00 0.00 2.17
2085 2847 3.676873 GCACGATTCCTGCCAATTTCAAT 60.677 43.478 0.00 0.00 0.00 2.57
2086 2848 2.352617 GCACGATTCCTGCCAATTTCAA 60.353 45.455 0.00 0.00 0.00 2.69
2093 2855 3.247056 TTCCGCACGATTCCTGCCA 62.247 57.895 0.00 0.00 0.00 4.92
2386 3148 5.191595 GACAATTATATGTCGATCGGTGC 57.808 43.478 16.41 6.78 40.23 5.01
2439 3201 0.250234 CCATCTTCGTCAGGCTCCAA 59.750 55.000 0.00 0.00 0.00 3.53
2440 3202 0.904865 ACCATCTTCGTCAGGCTCCA 60.905 55.000 0.00 0.00 0.00 3.86
2441 3203 0.250513 AACCATCTTCGTCAGGCTCC 59.749 55.000 0.00 0.00 0.00 4.70
2442 3204 1.363744 CAACCATCTTCGTCAGGCTC 58.636 55.000 0.00 0.00 0.00 4.70
2723 3485 6.321181 TGCTCTGTGTCATCTGTATGTATGTA 59.679 38.462 0.00 0.00 34.50 2.29
2724 3486 5.127682 TGCTCTGTGTCATCTGTATGTATGT 59.872 40.000 0.00 0.00 34.50 2.29
2725 3487 5.461407 GTGCTCTGTGTCATCTGTATGTATG 59.539 44.000 0.00 0.00 34.50 2.39
2726 3488 5.127682 TGTGCTCTGTGTCATCTGTATGTAT 59.872 40.000 0.00 0.00 34.50 2.29
2770 3532 6.623353 CGTTCGAAAAGAAAAAGGAAAATTGC 59.377 34.615 0.00 0.00 41.10 3.56
2772 3534 7.329962 ACACGTTCGAAAAGAAAAAGGAAAATT 59.670 29.630 0.00 0.00 41.10 1.82
2778 3540 4.654015 TCACACGTTCGAAAAGAAAAAGG 58.346 39.130 0.00 0.00 41.10 3.11
2888 3653 3.768468 TTTTCGTTCGTTTGAGCCTTT 57.232 38.095 0.00 0.00 0.00 3.11
2911 3678 3.511540 TGTGATTGCCTATATCTCCTCCG 59.488 47.826 0.00 0.00 0.00 4.63
2912 3679 4.619394 CGTGTGATTGCCTATATCTCCTCC 60.619 50.000 0.00 0.00 0.00 4.30
2963 3731 5.245105 CAACGCACGTACATGTTTACTATG 58.755 41.667 2.30 0.00 0.00 2.23
2968 3736 1.865340 TGCAACGCACGTACATGTTTA 59.135 42.857 2.30 0.00 31.71 2.01
2977 3745 0.599991 TCTCTCATTGCAACGCACGT 60.600 50.000 0.00 0.00 38.71 4.49
3025 3794 7.470147 CGCTCATATATCGGGGTATTGAGTTAT 60.470 40.741 0.00 0.00 0.00 1.89
3026 3795 6.183360 CGCTCATATATCGGGGTATTGAGTTA 60.183 42.308 0.00 0.00 0.00 2.24
3027 3796 5.394224 CGCTCATATATCGGGGTATTGAGTT 60.394 44.000 0.00 0.00 0.00 3.01
3028 3797 4.098044 CGCTCATATATCGGGGTATTGAGT 59.902 45.833 0.00 0.00 0.00 3.41
3029 3798 4.098044 ACGCTCATATATCGGGGTATTGAG 59.902 45.833 0.00 0.00 0.00 3.02
3030 3799 4.021229 ACGCTCATATATCGGGGTATTGA 58.979 43.478 3.39 0.00 0.00 2.57
3031 3800 4.360563 GACGCTCATATATCGGGGTATTG 58.639 47.826 4.78 0.00 0.00 1.90
3032 3801 3.383825 GGACGCTCATATATCGGGGTATT 59.616 47.826 4.78 0.00 0.00 1.89
3033 3802 2.957006 GGACGCTCATATATCGGGGTAT 59.043 50.000 4.78 0.00 0.00 2.73
3034 3803 2.025605 AGGACGCTCATATATCGGGGTA 60.026 50.000 4.78 0.00 0.00 3.69
3035 3804 1.183549 GGACGCTCATATATCGGGGT 58.816 55.000 4.54 4.54 0.00 4.95
3036 3805 1.405821 GAGGACGCTCATATATCGGGG 59.594 57.143 0.00 0.00 0.00 5.73
3037 3806 2.370349 AGAGGACGCTCATATATCGGG 58.630 52.381 0.00 0.00 0.00 5.14
3038 3807 5.759506 AATAGAGGACGCTCATATATCGG 57.240 43.478 0.00 0.00 0.00 4.18
3039 3808 6.786207 TGAAATAGAGGACGCTCATATATCG 58.214 40.000 0.00 0.00 0.00 2.92
3040 3809 8.029522 TGTTGAAATAGAGGACGCTCATATATC 58.970 37.037 0.00 0.00 0.00 1.63
3041 3810 7.815068 GTGTTGAAATAGAGGACGCTCATATAT 59.185 37.037 0.00 0.00 0.00 0.86
3042 3811 7.145985 GTGTTGAAATAGAGGACGCTCATATA 58.854 38.462 0.00 0.00 0.00 0.86
3043 3812 5.986135 GTGTTGAAATAGAGGACGCTCATAT 59.014 40.000 0.00 0.00 0.00 1.78
3044 3813 5.348986 GTGTTGAAATAGAGGACGCTCATA 58.651 41.667 0.00 0.00 0.00 2.15
3045 3814 4.184629 GTGTTGAAATAGAGGACGCTCAT 58.815 43.478 0.00 0.00 0.00 2.90
3046 3815 3.585862 GTGTTGAAATAGAGGACGCTCA 58.414 45.455 0.00 0.00 0.00 4.26
3047 3816 2.599082 CGTGTTGAAATAGAGGACGCTC 59.401 50.000 0.00 0.00 0.00 5.03
3048 3817 2.607187 CGTGTTGAAATAGAGGACGCT 58.393 47.619 0.00 0.00 0.00 5.07
3049 3818 1.659098 CCGTGTTGAAATAGAGGACGC 59.341 52.381 0.00 0.00 0.00 5.19
3050 3819 2.921754 GACCGTGTTGAAATAGAGGACG 59.078 50.000 0.00 0.00 0.00 4.79
3051 3820 2.921754 CGACCGTGTTGAAATAGAGGAC 59.078 50.000 0.00 0.00 0.00 3.85
3052 3821 2.673043 GCGACCGTGTTGAAATAGAGGA 60.673 50.000 0.00 0.00 0.00 3.71
3053 3822 1.659098 GCGACCGTGTTGAAATAGAGG 59.341 52.381 0.00 0.00 0.00 3.69
3054 3823 2.345641 CAGCGACCGTGTTGAAATAGAG 59.654 50.000 0.00 0.00 0.00 2.43
3055 3824 2.029739 TCAGCGACCGTGTTGAAATAGA 60.030 45.455 0.00 0.00 0.00 1.98
3056 3825 2.333926 TCAGCGACCGTGTTGAAATAG 58.666 47.619 0.00 0.00 0.00 1.73
3057 3826 2.442212 TCAGCGACCGTGTTGAAATA 57.558 45.000 0.00 0.00 0.00 1.40
3058 3827 1.732259 GATCAGCGACCGTGTTGAAAT 59.268 47.619 0.00 0.00 0.00 2.17
3059 3828 1.144969 GATCAGCGACCGTGTTGAAA 58.855 50.000 0.00 0.00 0.00 2.69
3060 3829 0.032815 TGATCAGCGACCGTGTTGAA 59.967 50.000 0.00 0.00 0.00 2.69
3061 3830 0.246360 ATGATCAGCGACCGTGTTGA 59.754 50.000 0.09 0.00 0.00 3.18
3062 3831 1.078709 AATGATCAGCGACCGTGTTG 58.921 50.000 0.09 0.00 0.00 3.33
3103 3913 0.606130 ATGTGGCAACGTGATCAGCA 60.606 50.000 0.00 0.00 42.51 4.41
3125 3935 2.489938 AAGCGAGGGTGCATAGAAAA 57.510 45.000 0.00 0.00 37.31 2.29
3126 3936 3.133901 TCATAAGCGAGGGTGCATAGAAA 59.866 43.478 0.00 0.00 37.31 2.52
3132 3942 0.179048 CCATCATAAGCGAGGGTGCA 60.179 55.000 0.00 0.00 37.31 4.57
3138 3948 2.492019 TCACGTCCATCATAAGCGAG 57.508 50.000 0.00 0.00 0.00 5.03
3155 3965 4.017808 TGCATTGAATCATGTGGACATCA 58.982 39.130 0.00 0.00 33.61 3.07
3165 3975 3.242837 CCACGTCGAATGCATTGAATCAT 60.243 43.478 18.59 0.00 0.00 2.45
3263 4073 7.061789 GGTCATGGTCGATGAAATTTGTTTTAC 59.938 37.037 0.00 0.00 42.96 2.01
3329 4139 4.710324 CAGTAGGTAAGACAACCCAACAA 58.290 43.478 0.00 0.00 40.71 2.83
3333 4143 1.626825 GGCAGTAGGTAAGACAACCCA 59.373 52.381 0.00 0.00 40.71 4.51
3374 4184 1.673337 GTTCGGGTTGGTGGGCTAC 60.673 63.158 0.00 0.00 0.00 3.58
3609 4427 5.168569 CGACTGTTTTCATCCTTGTAGCTA 58.831 41.667 0.00 0.00 0.00 3.32
3623 4441 3.315191 ACATAGCAAGCAACGACTGTTTT 59.685 39.130 0.00 0.00 35.72 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.