Multiple sequence alignment - TraesCS6A01G024900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G024900 chr6A 100.000 9622 0 0 1 9622 12384928 12394549 0.000000e+00 17769.0
1 TraesCS6A01G024900 chr6A 87.821 312 32 6 219 525 530506741 530506431 2.550000e-95 361.0
2 TraesCS6A01G024900 chr6A 90.395 177 14 2 5172 5346 539421361 539421536 7.520000e-56 230.0
3 TraesCS6A01G024900 chr6A 93.506 154 9 1 8349 8501 12423284 12423437 2.700000e-55 228.0
4 TraesCS6A01G024900 chr6D 95.651 8531 238 54 545 8994 10905406 10913884 0.000000e+00 13575.0
5 TraesCS6A01G024900 chr6D 85.103 678 60 18 8333 8994 11050956 11051608 0.000000e+00 654.0
6 TraesCS6A01G024900 chr6D 86.751 317 26 8 219 525 25632906 25632596 1.200000e-88 339.0
7 TraesCS6A01G024900 chr6D 86.751 317 26 11 219 525 315796383 315796693 1.200000e-88 339.0
8 TraesCS6A01G024900 chr6B 96.101 8232 230 37 616 8813 20679679 20687853 0.000000e+00 13339.0
9 TraesCS6A01G024900 chr6B 92.553 94 3 2 103 192 20679487 20679580 2.180000e-26 132.0
10 TraesCS6A01G024900 chr7B 83.759 3719 555 38 4922 8623 119207256 119203570 0.000000e+00 3476.0
11 TraesCS6A01G024900 chr7B 84.143 3128 429 48 1001 4109 119211146 119208067 0.000000e+00 2966.0
12 TraesCS6A01G024900 chr7A 83.746 3716 557 37 4924 8623 211709362 211705678 0.000000e+00 3472.0
13 TraesCS6A01G024900 chr7A 83.785 3139 438 44 1001 4109 211713491 211710394 0.000000e+00 2911.0
14 TraesCS6A01G024900 chr7A 82.915 199 34 0 9268 9466 41011376 41011574 7.680000e-41 180.0
15 TraesCS6A01G024900 chr7D 84.031 3131 423 50 1001 4109 156800534 156797459 0.000000e+00 2940.0
16 TraesCS6A01G024900 chr7D 84.430 2402 327 28 4922 7310 156796597 156794230 0.000000e+00 2320.0
17 TraesCS6A01G024900 chr7D 86.435 317 34 8 215 525 431339369 431339682 1.200000e-88 339.0
18 TraesCS6A01G024900 chr7D 96.970 33 1 0 5110 5142 476182218 476182186 1.000000e-03 56.5
19 TraesCS6A01G024900 chr5D 89.953 846 51 14 3313 4125 26259961 26260805 0.000000e+00 1061.0
20 TraesCS6A01G024900 chr5D 83.949 623 43 23 6428 7040 399609355 399608780 2.360000e-150 544.0
21 TraesCS6A01G024900 chr5D 93.333 150 8 1 7516 7665 399608745 399608598 4.520000e-53 220.0
22 TraesCS6A01G024900 chr5A 90.038 522 36 7 4127 4642 18057630 18058141 0.000000e+00 662.0
23 TraesCS6A01G024900 chr5A 81.619 593 108 1 9008 9599 629275598 629276190 3.120000e-134 490.0
24 TraesCS6A01G024900 chr5A 86.478 318 32 5 219 525 631353419 631353102 1.200000e-88 339.0
25 TraesCS6A01G024900 chr5A 86.667 300 22 3 5066 5347 128260533 128260234 5.610000e-82 316.0
26 TraesCS6A01G024900 chr4A 87.809 566 67 2 9048 9613 179561112 179560549 0.000000e+00 662.0
27 TraesCS6A01G024900 chr4A 99.020 102 1 0 1 102 513974837 513974938 5.940000e-42 183.0
28 TraesCS6A01G024900 chr5B 87.523 545 47 8 4101 4642 18332157 18332683 2.300000e-170 610.0
29 TraesCS6A01G024900 chr5B 83.461 393 30 16 3313 3671 18331769 18332160 5.570000e-87 333.0
30 TraesCS6A01G024900 chr5B 94.690 113 4 2 1 112 143401751 143401862 3.570000e-39 174.0
31 TraesCS6A01G024900 chr2D 91.710 386 31 1 9229 9613 407210667 407211052 1.420000e-147 534.0
32 TraesCS6A01G024900 chr2D 86.349 315 32 6 219 525 161896509 161896198 5.570000e-87 333.0
33 TraesCS6A01G024900 chr2D 95.495 111 3 2 1 111 378529877 378529769 9.930000e-40 176.0
34 TraesCS6A01G024900 chrUn 82.631 593 102 1 9008 9599 16270308 16270900 3.080000e-144 523.0
35 TraesCS6A01G024900 chrUn 82.392 602 105 1 9008 9608 290204444 290203843 3.080000e-144 523.0
36 TraesCS6A01G024900 chrUn 82.462 593 103 1 9008 9599 16301447 16302039 1.430000e-142 518.0
37 TraesCS6A01G024900 chrUn 82.226 602 106 1 9008 9608 453243757 453243156 1.430000e-142 518.0
38 TraesCS6A01G024900 chrUn 82.389 494 86 1 9008 9500 454888337 454888830 6.900000e-116 429.0
39 TraesCS6A01G024900 chrUn 86.250 320 28 11 218 525 69200122 69200437 5.570000e-87 333.0
40 TraesCS6A01G024900 chr3B 84.974 386 21 11 8642 8994 759476694 759476313 3.300000e-94 357.0
41 TraesCS6A01G024900 chr3B 97.222 108 3 0 1 108 215434676 215434569 5.940000e-42 183.0
42 TraesCS6A01G024900 chr3B 97.170 106 3 0 1 106 734475932 734476037 7.680000e-41 180.0
43 TraesCS6A01G024900 chr3B 95.536 112 3 2 1 110 101296980 101296869 2.760000e-40 178.0
44 TraesCS6A01G024900 chr3A 86.834 319 28 12 219 525 585061588 585061904 2.570000e-90 344.0
45 TraesCS6A01G024900 chr3A 86.792 318 28 8 219 525 80519506 80519820 9.250000e-90 342.0
46 TraesCS6A01G024900 chr1A 89.916 238 24 0 9376 9613 42230193 42230430 3.380000e-79 307.0
47 TraesCS6A01G024900 chr2A 95.495 111 5 0 1 111 767227318 767227208 2.760000e-40 178.0
48 TraesCS6A01G024900 chr2B 95.536 112 2 3 1 111 498330801 498330910 9.930000e-40 176.0
49 TraesCS6A01G024900 chr2B 93.162 117 5 2 1 117 234813302 234813415 1.660000e-37 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G024900 chr6A 12384928 12394549 9621 False 17769.0 17769 100.0000 1 9622 1 chr6A.!!$F1 9621
1 TraesCS6A01G024900 chr6D 10905406 10913884 8478 False 13575.0 13575 95.6510 545 8994 1 chr6D.!!$F1 8449
2 TraesCS6A01G024900 chr6D 11050956 11051608 652 False 654.0 654 85.1030 8333 8994 1 chr6D.!!$F2 661
3 TraesCS6A01G024900 chr6B 20679487 20687853 8366 False 6735.5 13339 94.3270 103 8813 2 chr6B.!!$F1 8710
4 TraesCS6A01G024900 chr7B 119203570 119211146 7576 True 3221.0 3476 83.9510 1001 8623 2 chr7B.!!$R1 7622
5 TraesCS6A01G024900 chr7A 211705678 211713491 7813 True 3191.5 3472 83.7655 1001 8623 2 chr7A.!!$R1 7622
6 TraesCS6A01G024900 chr7D 156794230 156800534 6304 True 2630.0 2940 84.2305 1001 7310 2 chr7D.!!$R2 6309
7 TraesCS6A01G024900 chr5D 26259961 26260805 844 False 1061.0 1061 89.9530 3313 4125 1 chr5D.!!$F1 812
8 TraesCS6A01G024900 chr5D 399608598 399609355 757 True 382.0 544 88.6410 6428 7665 2 chr5D.!!$R1 1237
9 TraesCS6A01G024900 chr5A 18057630 18058141 511 False 662.0 662 90.0380 4127 4642 1 chr5A.!!$F1 515
10 TraesCS6A01G024900 chr5A 629275598 629276190 592 False 490.0 490 81.6190 9008 9599 1 chr5A.!!$F2 591
11 TraesCS6A01G024900 chr4A 179560549 179561112 563 True 662.0 662 87.8090 9048 9613 1 chr4A.!!$R1 565
12 TraesCS6A01G024900 chr5B 18331769 18332683 914 False 471.5 610 85.4920 3313 4642 2 chr5B.!!$F2 1329
13 TraesCS6A01G024900 chrUn 16270308 16270900 592 False 523.0 523 82.6310 9008 9599 1 chrUn.!!$F1 591
14 TraesCS6A01G024900 chrUn 290203843 290204444 601 True 523.0 523 82.3920 9008 9608 1 chrUn.!!$R1 600
15 TraesCS6A01G024900 chrUn 16301447 16302039 592 False 518.0 518 82.4620 9008 9599 1 chrUn.!!$F2 591
16 TraesCS6A01G024900 chrUn 453243156 453243757 601 True 518.0 518 82.2260 9008 9608 1 chrUn.!!$R2 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 307 0.026803 GCCTCGCAACGATCAACATC 59.973 55.000 0.00 0.0 34.61 3.06 F
608 645 0.106519 CCAAGGAAGGCCCGAATGAT 60.107 55.000 0.00 0.0 40.87 2.45 F
1590 1680 0.178767 CCATCGGGAAGCTCATCACA 59.821 55.000 0.00 0.0 35.59 3.58 F
2575 2681 0.111061 AAGAAGTCCATGTGCCAGCA 59.889 50.000 0.00 0.0 0.00 4.41 F
3902 4055 1.671328 TGCCTATCGAGAGTCAGTTCG 59.329 52.381 6.28 0.0 38.13 3.95 F
4538 4889 2.174424 TGCCCATACAGATGTGGCATTA 59.826 45.455 10.50 0.0 46.15 1.90 F
6113 7024 0.253044 TTGATCTGCAGCCACTACCC 59.747 55.000 9.47 0.0 0.00 3.69 F
6407 7318 0.387202 TTGGTGAATTTGCCCGTGTG 59.613 50.000 0.00 0.0 0.00 3.82 F
6875 7795 0.842467 AGAGTGGTAAGCCTGCCCTT 60.842 55.000 0.00 0.0 35.27 3.95 F
7079 8005 0.984995 AGGGCCTTAGTGACCTTGAC 59.015 55.000 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1437 0.541063 TCTGGGGCTTGTAGACGACA 60.541 55.000 0.00 0.00 35.78 4.35 R
2557 2663 0.330604 ATGCTGGCACATGGACTTCT 59.669 50.000 0.00 0.00 38.20 2.85 R
2668 2774 1.376553 GCTCTGGACCCTGTTCAGC 60.377 63.158 0.00 0.00 38.92 4.26 R
4264 4431 0.673333 CACCGCAATGTACAGCCAGA 60.673 55.000 0.33 0.00 0.00 3.86 R
5034 5938 0.039618 TGGCAATCCTTCCAAGGTCC 59.960 55.000 5.24 4.14 46.54 4.46 R
6407 7318 1.197036 GTTTCGCCTGTTAGCTCAACC 59.803 52.381 0.00 0.00 36.20 3.77 R
7934 8860 0.105778 GGGCAGAAAGGAGGATCTCG 59.894 60.000 0.00 0.00 33.73 4.04 R
8174 9100 1.825341 CAGGTCCCGCATCTCATCA 59.175 57.895 0.00 0.00 0.00 3.07 R
8597 9523 0.465705 CGCCTCCAGCTTCCTTGATA 59.534 55.000 0.00 0.00 40.39 2.15 R
8995 9944 0.103208 CCCGAAAGAGAGATCCACCG 59.897 60.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.923143 ACAAAACCTTTAAATATAACTCAAGGC 57.077 29.630 0.00 0.00 0.00 4.35
32 33 9.921637 CAAAACCTTTAAATATAACTCAAGGCA 57.078 29.630 0.00 0.00 0.00 4.75
34 35 9.923143 AAACCTTTAAATATAACTCAAGGCAAC 57.077 29.630 0.00 0.00 0.00 4.17
35 36 8.063200 ACCTTTAAATATAACTCAAGGCAACC 57.937 34.615 0.00 0.00 37.17 3.77
36 37 7.672239 ACCTTTAAATATAACTCAAGGCAACCA 59.328 33.333 0.00 0.00 37.17 3.67
37 38 8.695456 CCTTTAAATATAACTCAAGGCAACCAT 58.305 33.333 0.00 0.00 37.17 3.55
41 42 8.823220 AAATATAACTCAAGGCAACCATTAGT 57.177 30.769 0.00 0.00 37.17 2.24
42 43 8.451908 AATATAACTCAAGGCAACCATTAGTC 57.548 34.615 0.00 0.00 37.17 2.59
43 44 3.073274 ACTCAAGGCAACCATTAGTCC 57.927 47.619 0.00 0.00 37.17 3.85
44 45 2.375174 ACTCAAGGCAACCATTAGTCCA 59.625 45.455 0.00 0.00 37.17 4.02
45 46 3.010584 ACTCAAGGCAACCATTAGTCCAT 59.989 43.478 0.00 0.00 37.17 3.41
46 47 4.227300 ACTCAAGGCAACCATTAGTCCATA 59.773 41.667 0.00 0.00 37.17 2.74
47 48 4.780815 TCAAGGCAACCATTAGTCCATAG 58.219 43.478 0.00 0.00 37.17 2.23
48 49 4.473196 TCAAGGCAACCATTAGTCCATAGA 59.527 41.667 0.00 0.00 37.17 1.98
49 50 4.696479 AGGCAACCATTAGTCCATAGAG 57.304 45.455 0.00 0.00 37.17 2.43
50 51 4.298626 AGGCAACCATTAGTCCATAGAGA 58.701 43.478 0.00 0.00 37.17 3.10
51 52 4.910304 AGGCAACCATTAGTCCATAGAGAT 59.090 41.667 0.00 0.00 37.17 2.75
52 53 5.370880 AGGCAACCATTAGTCCATAGAGATT 59.629 40.000 0.00 0.00 37.17 2.40
53 54 5.471456 GGCAACCATTAGTCCATAGAGATTG 59.529 44.000 0.00 0.00 0.00 2.67
54 55 6.058183 GCAACCATTAGTCCATAGAGATTGT 58.942 40.000 0.00 0.00 0.00 2.71
55 56 6.203723 GCAACCATTAGTCCATAGAGATTGTC 59.796 42.308 0.00 0.00 0.00 3.18
56 57 7.275183 CAACCATTAGTCCATAGAGATTGTCA 58.725 38.462 0.00 0.00 0.00 3.58
57 58 7.623999 ACCATTAGTCCATAGAGATTGTCAT 57.376 36.000 0.00 0.00 0.00 3.06
58 59 7.675062 ACCATTAGTCCATAGAGATTGTCATC 58.325 38.462 0.00 0.00 0.00 2.92
59 60 7.290948 ACCATTAGTCCATAGAGATTGTCATCA 59.709 37.037 0.00 0.00 0.00 3.07
60 61 8.152898 CCATTAGTCCATAGAGATTGTCATCAA 58.847 37.037 0.00 0.00 37.98 2.57
61 62 9.722184 CATTAGTCCATAGAGATTGTCATCAAT 57.278 33.333 0.00 0.00 45.57 2.57
63 64 9.551734 TTAGTCCATAGAGATTGTCATCAATTG 57.448 33.333 0.00 0.00 43.33 2.32
64 65 6.485984 AGTCCATAGAGATTGTCATCAATTGC 59.514 38.462 0.00 0.00 43.33 3.56
65 66 5.766670 TCCATAGAGATTGTCATCAATTGCC 59.233 40.000 0.00 0.00 43.33 4.52
66 67 5.533528 CCATAGAGATTGTCATCAATTGCCA 59.466 40.000 0.00 0.00 43.33 4.92
67 68 6.040054 CCATAGAGATTGTCATCAATTGCCAA 59.960 38.462 0.00 1.71 43.33 4.52
68 69 5.988310 AGAGATTGTCATCAATTGCCAAA 57.012 34.783 0.00 0.00 43.33 3.28
69 70 6.349243 AGAGATTGTCATCAATTGCCAAAA 57.651 33.333 0.00 0.00 43.33 2.44
70 71 6.161381 AGAGATTGTCATCAATTGCCAAAAC 58.839 36.000 0.00 0.00 43.33 2.43
71 72 5.240121 AGATTGTCATCAATTGCCAAAACC 58.760 37.500 0.00 0.00 43.33 3.27
72 73 4.412796 TTGTCATCAATTGCCAAAACCA 57.587 36.364 0.00 0.00 0.00 3.67
73 74 4.412796 TGTCATCAATTGCCAAAACCAA 57.587 36.364 0.00 0.00 0.00 3.67
74 75 4.774124 TGTCATCAATTGCCAAAACCAAA 58.226 34.783 0.00 0.00 0.00 3.28
75 76 4.574013 TGTCATCAATTGCCAAAACCAAAC 59.426 37.500 0.00 0.00 0.00 2.93
76 77 4.574013 GTCATCAATTGCCAAAACCAAACA 59.426 37.500 0.00 0.00 0.00 2.83
77 78 5.239087 GTCATCAATTGCCAAAACCAAACAT 59.761 36.000 0.00 0.00 0.00 2.71
78 79 5.238868 TCATCAATTGCCAAAACCAAACATG 59.761 36.000 0.00 0.00 0.00 3.21
79 80 3.881688 TCAATTGCCAAAACCAAACATGG 59.118 39.130 0.00 0.00 36.00 3.66
80 81 2.338577 TTGCCAAAACCAAACATGGG 57.661 45.000 0.00 0.00 33.45 4.00
81 82 0.471617 TGCCAAAACCAAACATGGGG 59.528 50.000 0.00 0.00 33.45 4.96
82 83 0.250684 GCCAAAACCAAACATGGGGG 60.251 55.000 0.00 0.00 33.45 5.40
83 84 0.250684 CCAAAACCAAACATGGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
84 85 0.471617 CAAAACCAAACATGGGGGCA 59.528 50.000 0.00 0.00 0.00 5.36
85 86 1.073603 CAAAACCAAACATGGGGGCAT 59.926 47.619 0.00 0.00 0.00 4.40
86 87 0.983467 AAACCAAACATGGGGGCATC 59.017 50.000 0.00 0.00 0.00 3.91
87 88 1.257055 AACCAAACATGGGGGCATCG 61.257 55.000 0.00 0.00 0.00 3.84
88 89 2.495866 CAAACATGGGGGCATCGC 59.504 61.111 0.00 0.00 0.00 4.58
89 90 2.037049 AAACATGGGGGCATCGCA 59.963 55.556 0.00 0.00 42.62 5.10
93 94 2.279743 ATGGGGGCATCGCATGTT 59.720 55.556 7.79 0.00 45.64 2.71
94 95 1.829533 ATGGGGGCATCGCATGTTC 60.830 57.895 7.79 0.00 45.64 3.18
95 96 2.124151 GGGGGCATCGCATGTTCT 60.124 61.111 0.00 0.00 0.00 3.01
96 97 1.754234 GGGGGCATCGCATGTTCTT 60.754 57.895 0.00 0.00 0.00 2.52
97 98 1.322538 GGGGGCATCGCATGTTCTTT 61.323 55.000 0.00 0.00 0.00 2.52
98 99 0.101219 GGGGCATCGCATGTTCTTTC 59.899 55.000 0.00 0.00 0.00 2.62
99 100 0.810648 GGGCATCGCATGTTCTTTCA 59.189 50.000 0.00 0.00 0.00 2.69
100 101 1.468054 GGGCATCGCATGTTCTTTCAC 60.468 52.381 0.00 0.00 0.00 3.18
101 102 1.470098 GGCATCGCATGTTCTTTCACT 59.530 47.619 0.00 0.00 0.00 3.41
205 242 0.172578 CTAGATGACCCGTTGCGTCA 59.827 55.000 0.00 0.00 44.00 4.35
218 255 2.787249 CGTCAAGGCCGAATGCAG 59.213 61.111 0.00 0.00 43.89 4.41
219 256 2.753966 CGTCAAGGCCGAATGCAGG 61.754 63.158 0.00 0.00 43.89 4.85
220 257 2.045045 TCAAGGCCGAATGCAGGG 60.045 61.111 0.00 0.00 43.89 4.45
221 258 2.045045 CAAGGCCGAATGCAGGGA 60.045 61.111 0.00 0.00 43.89 4.20
222 259 2.117156 CAAGGCCGAATGCAGGGAG 61.117 63.158 0.00 0.00 43.89 4.30
223 260 4.496336 AGGCCGAATGCAGGGAGC 62.496 66.667 0.00 0.00 43.89 4.70
235 272 2.000447 GCAGGGAGCAACTAGTTAACG 59.000 52.381 8.04 0.00 44.79 3.18
236 273 2.353406 GCAGGGAGCAACTAGTTAACGA 60.353 50.000 8.04 0.00 44.79 3.85
237 274 3.512680 CAGGGAGCAACTAGTTAACGAG 58.487 50.000 13.50 13.50 0.00 4.18
238 275 2.094130 AGGGAGCAACTAGTTAACGAGC 60.094 50.000 14.82 7.28 0.00 5.03
239 276 1.918609 GGAGCAACTAGTTAACGAGCG 59.081 52.381 14.82 8.20 0.00 5.03
240 277 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
241 278 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
242 279 1.725164 GCAACTAGTTAACGAGCGCTT 59.275 47.619 13.26 0.00 0.00 4.68
243 280 2.222530 GCAACTAGTTAACGAGCGCTTC 60.223 50.000 13.26 3.81 0.00 3.86
244 281 3.243336 CAACTAGTTAACGAGCGCTTCT 58.757 45.455 13.26 1.05 0.00 2.85
245 282 3.572604 ACTAGTTAACGAGCGCTTCTT 57.427 42.857 13.26 8.66 0.00 2.52
246 283 3.910648 ACTAGTTAACGAGCGCTTCTTT 58.089 40.909 13.26 7.89 0.00 2.52
247 284 3.673809 ACTAGTTAACGAGCGCTTCTTTG 59.326 43.478 13.26 1.88 0.00 2.77
248 285 1.798813 AGTTAACGAGCGCTTCTTTGG 59.201 47.619 13.26 0.00 0.00 3.28
249 286 1.136057 GTTAACGAGCGCTTCTTTGGG 60.136 52.381 13.26 0.00 0.00 4.12
250 287 0.319083 TAACGAGCGCTTCTTTGGGA 59.681 50.000 13.26 0.00 0.00 4.37
251 288 0.951040 AACGAGCGCTTCTTTGGGAG 60.951 55.000 13.26 0.00 0.00 4.30
252 289 2.744768 CGAGCGCTTCTTTGGGAGC 61.745 63.158 13.26 0.00 0.00 4.70
253 290 2.360475 AGCGCTTCTTTGGGAGCC 60.360 61.111 2.64 0.00 0.00 4.70
254 291 2.360475 GCGCTTCTTTGGGAGCCT 60.360 61.111 0.00 0.00 0.00 4.58
255 292 2.402572 GCGCTTCTTTGGGAGCCTC 61.403 63.158 0.00 0.00 0.00 4.70
256 293 2.103042 CGCTTCTTTGGGAGCCTCG 61.103 63.158 0.00 0.00 0.00 4.63
257 294 2.402572 GCTTCTTTGGGAGCCTCGC 61.403 63.158 1.10 1.10 0.00 5.03
258 295 1.003355 CTTCTTTGGGAGCCTCGCA 60.003 57.895 7.46 7.46 37.56 5.10
259 296 0.606401 CTTCTTTGGGAGCCTCGCAA 60.606 55.000 19.06 19.06 45.66 4.85
260 297 0.889186 TTCTTTGGGAGCCTCGCAAC 60.889 55.000 22.16 0.00 46.71 4.17
261 298 2.668212 TTTGGGAGCCTCGCAACG 60.668 61.111 22.16 0.00 46.71 4.10
262 299 3.171828 TTTGGGAGCCTCGCAACGA 62.172 57.895 22.16 7.67 46.71 3.85
263 300 2.463589 TTTGGGAGCCTCGCAACGAT 62.464 55.000 22.16 0.00 46.71 3.73
264 301 2.586357 GGGAGCCTCGCAACGATC 60.586 66.667 3.57 0.00 34.61 3.69
265 302 2.184322 GGAGCCTCGCAACGATCA 59.816 61.111 0.00 0.00 34.61 2.92
266 303 1.447838 GGAGCCTCGCAACGATCAA 60.448 57.895 0.00 0.00 34.61 2.57
267 304 1.696832 GGAGCCTCGCAACGATCAAC 61.697 60.000 0.00 0.00 34.61 3.18
268 305 1.005037 AGCCTCGCAACGATCAACA 60.005 52.632 0.00 0.00 34.61 3.33
269 306 0.391661 AGCCTCGCAACGATCAACAT 60.392 50.000 0.00 0.00 34.61 2.71
270 307 0.026803 GCCTCGCAACGATCAACATC 59.973 55.000 0.00 0.00 34.61 3.06
271 308 1.358877 CCTCGCAACGATCAACATCA 58.641 50.000 0.00 0.00 34.61 3.07
272 309 1.061131 CCTCGCAACGATCAACATCAC 59.939 52.381 0.00 0.00 34.61 3.06
273 310 1.995484 CTCGCAACGATCAACATCACT 59.005 47.619 0.00 0.00 34.61 3.41
274 311 2.412870 TCGCAACGATCAACATCACTT 58.587 42.857 0.00 0.00 0.00 3.16
275 312 2.157474 TCGCAACGATCAACATCACTTG 59.843 45.455 0.00 0.00 0.00 3.16
276 313 2.725759 CGCAACGATCAACATCACTTGG 60.726 50.000 0.00 0.00 0.00 3.61
277 314 2.226437 GCAACGATCAACATCACTTGGT 59.774 45.455 0.00 0.00 0.00 3.67
278 315 3.813800 CAACGATCAACATCACTTGGTG 58.186 45.455 0.00 0.00 44.97 4.17
279 316 1.806542 ACGATCAACATCACTTGGTGC 59.193 47.619 0.00 0.00 43.17 5.01
280 317 1.201954 CGATCAACATCACTTGGTGCG 60.202 52.381 0.00 0.00 43.17 5.34
281 318 0.523072 ATCAACATCACTTGGTGCGC 59.477 50.000 0.00 0.00 43.17 6.09
282 319 0.534877 TCAACATCACTTGGTGCGCT 60.535 50.000 9.73 0.00 43.17 5.92
283 320 0.110056 CAACATCACTTGGTGCGCTC 60.110 55.000 9.73 4.47 35.93 5.03
284 321 0.250467 AACATCACTTGGTGCGCTCT 60.250 50.000 9.73 0.00 32.98 4.09
285 322 0.250467 ACATCACTTGGTGCGCTCTT 60.250 50.000 9.73 0.00 32.98 2.85
286 323 0.167470 CATCACTTGGTGCGCTCTTG 59.833 55.000 9.73 2.24 32.98 3.02
287 324 0.957395 ATCACTTGGTGCGCTCTTGG 60.957 55.000 9.73 1.89 32.98 3.61
288 325 2.980233 ACTTGGTGCGCTCTTGGC 60.980 61.111 9.73 0.00 37.64 4.52
289 326 3.741476 CTTGGTGCGCTCTTGGCC 61.741 66.667 9.73 0.00 37.74 5.36
290 327 4.577677 TTGGTGCGCTCTTGGCCA 62.578 61.111 9.73 0.00 37.74 5.36
291 328 3.866379 TTGGTGCGCTCTTGGCCAT 62.866 57.895 6.09 0.00 37.74 4.40
292 329 3.064324 GGTGCGCTCTTGGCCATT 61.064 61.111 6.09 0.00 37.74 3.16
293 330 2.486966 GTGCGCTCTTGGCCATTC 59.513 61.111 6.09 0.00 37.74 2.67
294 331 3.126879 TGCGCTCTTGGCCATTCG 61.127 61.111 6.09 9.21 37.74 3.34
295 332 4.543084 GCGCTCTTGGCCATTCGC 62.543 66.667 20.08 20.08 37.74 4.70
304 341 4.147322 GCCATTCGCCACGTGTCG 62.147 66.667 13.61 13.61 0.00 4.35
305 342 4.147322 CCATTCGCCACGTGTCGC 62.147 66.667 15.09 10.47 0.00 5.19
313 350 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
314 351 4.702081 ACGTGTCGCGCTCTGGAC 62.702 66.667 5.56 5.97 46.11 4.02
328 365 2.267961 GGACGCTTCCACCGGATT 59.732 61.111 9.46 0.00 42.30 3.01
329 366 1.376812 GGACGCTTCCACCGGATTT 60.377 57.895 9.46 0.00 42.30 2.17
330 367 0.958876 GGACGCTTCCACCGGATTTT 60.959 55.000 9.46 0.00 42.30 1.82
331 368 0.879090 GACGCTTCCACCGGATTTTT 59.121 50.000 9.46 0.00 0.00 1.94
355 392 8.783999 TTTTATTTTTCTACACGCATTTTCGA 57.216 26.923 0.00 0.00 0.00 3.71
356 393 7.769719 TTATTTTTCTACACGCATTTTCGAC 57.230 32.000 0.00 0.00 0.00 4.20
357 394 5.412526 TTTTTCTACACGCATTTTCGACT 57.587 34.783 0.00 0.00 0.00 4.18
358 395 5.412526 TTTTCTACACGCATTTTCGACTT 57.587 34.783 0.00 0.00 0.00 3.01
359 396 5.412526 TTTCTACACGCATTTTCGACTTT 57.587 34.783 0.00 0.00 0.00 2.66
360 397 5.412526 TTCTACACGCATTTTCGACTTTT 57.587 34.783 0.00 0.00 0.00 2.27
361 398 5.412526 TCTACACGCATTTTCGACTTTTT 57.587 34.783 0.00 0.00 0.00 1.94
362 399 6.528014 TCTACACGCATTTTCGACTTTTTA 57.472 33.333 0.00 0.00 0.00 1.52
363 400 6.946165 TCTACACGCATTTTCGACTTTTTAA 58.054 32.000 0.00 0.00 0.00 1.52
364 401 7.408123 TCTACACGCATTTTCGACTTTTTAAA 58.592 30.769 0.00 0.00 0.00 1.52
365 402 6.250756 ACACGCATTTTCGACTTTTTAAAC 57.749 33.333 0.00 0.00 0.00 2.01
366 403 5.052895 ACACGCATTTTCGACTTTTTAAACG 60.053 36.000 0.00 0.00 0.00 3.60
367 404 4.438471 ACGCATTTTCGACTTTTTAAACGG 59.562 37.500 0.00 0.00 0.00 4.44
368 405 4.438471 CGCATTTTCGACTTTTTAAACGGT 59.562 37.500 0.00 0.00 0.00 4.83
369 406 5.052238 CGCATTTTCGACTTTTTAAACGGTT 60.052 36.000 0.00 0.00 0.00 4.44
370 407 6.506670 CGCATTTTCGACTTTTTAAACGGTTT 60.507 34.615 11.33 11.33 0.00 3.27
371 408 7.174746 GCATTTTCGACTTTTTAAACGGTTTT 58.825 30.769 11.87 0.00 0.00 2.43
372 409 7.688989 GCATTTTCGACTTTTTAAACGGTTTTT 59.311 29.630 11.87 0.00 0.00 1.94
405 442 7.749539 TTTTTCGATGTTTTGGTTTTCTCTC 57.250 32.000 0.00 0.00 0.00 3.20
406 443 4.725556 TCGATGTTTTGGTTTTCTCTCG 57.274 40.909 0.00 0.00 0.00 4.04
407 444 3.496884 TCGATGTTTTGGTTTTCTCTCGG 59.503 43.478 0.00 0.00 0.00 4.63
408 445 3.250040 CGATGTTTTGGTTTTCTCTCGGT 59.750 43.478 0.00 0.00 0.00 4.69
409 446 4.610680 CGATGTTTTGGTTTTCTCTCGGTC 60.611 45.833 0.00 0.00 0.00 4.79
410 447 3.881220 TGTTTTGGTTTTCTCTCGGTCT 58.119 40.909 0.00 0.00 0.00 3.85
411 448 4.266714 TGTTTTGGTTTTCTCTCGGTCTT 58.733 39.130 0.00 0.00 0.00 3.01
412 449 4.334481 TGTTTTGGTTTTCTCTCGGTCTTC 59.666 41.667 0.00 0.00 0.00 2.87
413 450 2.833631 TGGTTTTCTCTCGGTCTTCC 57.166 50.000 0.00 0.00 0.00 3.46
414 451 2.043992 TGGTTTTCTCTCGGTCTTCCA 58.956 47.619 0.00 0.00 0.00 3.53
415 452 2.637872 TGGTTTTCTCTCGGTCTTCCAT 59.362 45.455 0.00 0.00 0.00 3.41
416 453 3.835978 TGGTTTTCTCTCGGTCTTCCATA 59.164 43.478 0.00 0.00 0.00 2.74
417 454 4.081642 TGGTTTTCTCTCGGTCTTCCATAG 60.082 45.833 0.00 0.00 0.00 2.23
418 455 3.802948 TTTCTCTCGGTCTTCCATAGC 57.197 47.619 0.00 0.00 0.00 2.97
419 456 2.738587 TCTCTCGGTCTTCCATAGCT 57.261 50.000 0.00 0.00 0.00 3.32
420 457 3.019799 TCTCTCGGTCTTCCATAGCTT 57.980 47.619 0.00 0.00 0.00 3.74
421 458 3.366396 TCTCTCGGTCTTCCATAGCTTT 58.634 45.455 0.00 0.00 0.00 3.51
422 459 3.769844 TCTCTCGGTCTTCCATAGCTTTT 59.230 43.478 0.00 0.00 0.00 2.27
423 460 4.116238 CTCTCGGTCTTCCATAGCTTTTC 58.884 47.826 0.00 0.00 0.00 2.29
424 461 2.860735 CTCGGTCTTCCATAGCTTTTCG 59.139 50.000 0.00 0.00 0.00 3.46
425 462 2.494471 TCGGTCTTCCATAGCTTTTCGA 59.506 45.455 0.00 0.00 0.00 3.71
426 463 3.132289 TCGGTCTTCCATAGCTTTTCGAT 59.868 43.478 0.00 0.00 0.00 3.59
427 464 3.491267 CGGTCTTCCATAGCTTTTCGATC 59.509 47.826 0.00 0.00 0.00 3.69
428 465 4.442706 GGTCTTCCATAGCTTTTCGATCA 58.557 43.478 0.00 0.00 0.00 2.92
429 466 4.876107 GGTCTTCCATAGCTTTTCGATCAA 59.124 41.667 0.00 0.00 0.00 2.57
430 467 5.354234 GGTCTTCCATAGCTTTTCGATCAAA 59.646 40.000 0.00 0.00 0.00 2.69
431 468 6.128007 GGTCTTCCATAGCTTTTCGATCAAAA 60.128 38.462 0.00 0.00 32.77 2.44
432 469 7.305474 GTCTTCCATAGCTTTTCGATCAAAAA 58.695 34.615 0.00 0.00 33.40 1.94
493 530 2.638628 TTTCTTTCGCGAAAGTCACG 57.361 45.000 43.49 28.57 45.88 4.35
494 531 0.856641 TTCTTTCGCGAAAGTCACGG 59.143 50.000 43.49 27.97 45.88 4.94
495 532 0.249155 TCTTTCGCGAAAGTCACGGT 60.249 50.000 43.49 0.00 45.88 4.83
496 533 0.580104 CTTTCGCGAAAGTCACGGTT 59.420 50.000 40.16 0.00 42.02 4.44
497 534 1.004292 CTTTCGCGAAAGTCACGGTTT 60.004 47.619 40.16 0.00 42.02 3.27
498 535 1.008329 TTCGCGAAAGTCACGGTTTT 58.992 45.000 21.14 0.00 0.00 2.43
499 536 1.008329 TCGCGAAAGTCACGGTTTTT 58.992 45.000 6.20 0.00 0.00 1.94
534 571 6.432802 CACGGTTGTGCTTTTTAATTAGTG 57.567 37.500 0.00 0.00 39.67 2.74
535 572 6.202937 CACGGTTGTGCTTTTTAATTAGTGA 58.797 36.000 0.00 0.00 39.67 3.41
536 573 6.141685 CACGGTTGTGCTTTTTAATTAGTGAC 59.858 38.462 0.00 0.00 39.67 3.67
537 574 5.338559 CGGTTGTGCTTTTTAATTAGTGACG 59.661 40.000 0.00 0.00 0.00 4.35
538 575 6.203647 GGTTGTGCTTTTTAATTAGTGACGT 58.796 36.000 0.00 0.00 0.00 4.34
539 576 6.358822 GGTTGTGCTTTTTAATTAGTGACGTC 59.641 38.462 9.11 9.11 0.00 4.34
540 577 5.672051 TGTGCTTTTTAATTAGTGACGTCG 58.328 37.500 11.62 0.00 0.00 5.12
541 578 4.548457 GTGCTTTTTAATTAGTGACGTCGC 59.452 41.667 21.32 21.32 0.00 5.19
542 579 4.086574 GCTTTTTAATTAGTGACGTCGCC 58.913 43.478 24.75 11.09 0.00 5.54
543 580 4.377635 GCTTTTTAATTAGTGACGTCGCCA 60.378 41.667 24.75 9.59 0.00 5.69
544 581 5.670149 TTTTTAATTAGTGACGTCGCCAA 57.330 34.783 24.75 18.50 0.00 4.52
545 582 5.670149 TTTTAATTAGTGACGTCGCCAAA 57.330 34.783 24.75 19.10 0.00 3.28
546 583 5.866335 TTTAATTAGTGACGTCGCCAAAT 57.134 34.783 24.75 20.36 0.00 2.32
547 584 3.740044 AATTAGTGACGTCGCCAAATG 57.260 42.857 24.75 0.00 0.00 2.32
548 585 0.793861 TTAGTGACGTCGCCAAATGC 59.206 50.000 24.75 0.91 0.00 3.56
549 586 0.319986 TAGTGACGTCGCCAAATGCA 60.320 50.000 24.75 0.00 41.33 3.96
552 589 1.442017 GACGTCGCCAAATGCAACC 60.442 57.895 0.00 0.00 41.33 3.77
588 625 1.908637 TTATCCCCCTCTCAGGCCCA 61.909 60.000 0.00 0.00 32.73 5.36
589 626 2.621672 TATCCCCCTCTCAGGCCCAC 62.622 65.000 0.00 0.00 32.73 4.61
592 629 2.935481 CCCTCTCAGGCCCACCAA 60.935 66.667 0.00 0.00 39.06 3.67
593 630 2.673523 CCTCTCAGGCCCACCAAG 59.326 66.667 0.00 0.00 39.06 3.61
594 631 2.673523 CTCTCAGGCCCACCAAGG 59.326 66.667 0.00 0.00 39.06 3.61
595 632 1.920325 CTCTCAGGCCCACCAAGGA 60.920 63.158 0.00 0.00 41.22 3.36
596 633 1.463214 TCTCAGGCCCACCAAGGAA 60.463 57.895 0.00 0.00 41.22 3.36
597 634 1.001641 CTCAGGCCCACCAAGGAAG 60.002 63.158 0.00 0.00 41.22 3.46
598 635 2.036256 CAGGCCCACCAAGGAAGG 59.964 66.667 0.00 0.00 41.22 3.46
603 640 3.646715 CCACCAAGGAAGGCCCGA 61.647 66.667 0.00 0.00 41.22 5.14
604 641 2.434331 CACCAAGGAAGGCCCGAA 59.566 61.111 0.00 0.00 40.87 4.30
605 642 1.000896 CACCAAGGAAGGCCCGAAT 60.001 57.895 0.00 0.00 40.87 3.34
606 643 1.000896 ACCAAGGAAGGCCCGAATG 60.001 57.895 0.00 0.00 40.87 2.67
607 644 1.302949 CCAAGGAAGGCCCGAATGA 59.697 57.895 0.00 0.00 40.87 2.57
608 645 0.106519 CCAAGGAAGGCCCGAATGAT 60.107 55.000 0.00 0.00 40.87 2.45
609 646 1.312815 CAAGGAAGGCCCGAATGATC 58.687 55.000 0.00 0.00 40.87 2.92
665 702 3.294750 CGATCTGGGTCGGTTCCA 58.705 61.111 0.00 0.00 37.94 3.53
776 820 3.788797 CCCCCAAATCCATCCCCT 58.211 61.111 0.00 0.00 0.00 4.79
779 824 0.936691 CCCCAAATCCATCCCCTCTT 59.063 55.000 0.00 0.00 0.00 2.85
787 832 1.004758 CATCCCCTCTTCTCCCCCA 59.995 63.158 0.00 0.00 0.00 4.96
915 960 2.046314 CCCACAGGTAACAGCCGG 60.046 66.667 0.00 0.00 41.41 6.13
917 962 2.031919 CACAGGTAACAGCCGGCA 59.968 61.111 31.54 4.11 41.41 5.69
1347 1437 3.082579 GCTCTCCCTTGCGGACGAT 62.083 63.158 0.00 0.00 34.86 3.73
1566 1656 1.852067 GCGCCATGTTCGACCAGTTT 61.852 55.000 0.00 0.00 0.00 2.66
1575 1665 2.737252 GTTCGACCAGTTTGTCTCCATC 59.263 50.000 0.00 0.00 32.97 3.51
1590 1680 0.178767 CCATCGGGAAGCTCATCACA 59.821 55.000 0.00 0.00 35.59 3.58
1915 2021 1.758440 GAGGTATGCAGATGGGCGGA 61.758 60.000 0.00 0.00 36.28 5.54
1954 2060 0.322816 TGCAGAACTCCAATGAGGGC 60.323 55.000 0.00 0.00 43.29 5.19
1966 2072 3.962718 CCAATGAGGGCCTGAACATAAAT 59.037 43.478 12.95 0.00 0.00 1.40
2263 2369 2.729028 TGGATAACCCAAGCTTAGCC 57.271 50.000 0.00 0.00 43.29 3.93
2347 2453 3.137360 AGAAAAGTATCAGGGATGAGGCC 59.863 47.826 0.00 0.00 0.00 5.19
2575 2681 0.111061 AAGAAGTCCATGTGCCAGCA 59.889 50.000 0.00 0.00 0.00 4.41
3067 3173 8.049117 ACTCAAATGGTAAAGCTTCTGATCATA 58.951 33.333 0.00 0.00 0.00 2.15
3428 3550 4.495422 GAAGGAGACATCGAAAACTGCTA 58.505 43.478 9.55 0.00 31.39 3.49
3902 4055 1.671328 TGCCTATCGAGAGTCAGTTCG 59.329 52.381 6.28 0.00 38.13 3.95
4275 4442 7.170658 GCAATTGTTAAATTTTCTGGCTGTACA 59.829 33.333 7.40 0.00 33.59 2.90
4414 4583 5.988287 TCAGTATTGTTATGCCAGATGTGA 58.012 37.500 0.00 0.00 0.00 3.58
4417 4586 8.210265 TCAGTATTGTTATGCCAGATGTGATTA 58.790 33.333 0.00 0.00 0.00 1.75
4441 4610 5.846203 AGTTGCACATTTTGTAGATTGCTT 58.154 33.333 0.00 0.00 0.00 3.91
4517 4868 6.643388 TCTGTGTATCAGTAACAGCATCATT 58.357 36.000 0.00 0.00 43.97 2.57
4538 4889 2.174424 TGCCCATACAGATGTGGCATTA 59.826 45.455 10.50 0.00 46.15 1.90
4723 5393 6.978080 CAGTAATGTGGTATTGGGTATTTTGC 59.022 38.462 0.00 0.00 0.00 3.68
4809 5636 4.344359 TGTTGTATATGGGCGCATCTTA 57.656 40.909 20.75 10.53 0.00 2.10
4823 5650 3.560068 CGCATCTTAATACTGGTCCCAAC 59.440 47.826 0.00 0.00 0.00 3.77
4854 5684 6.476378 AGAAATACCAGAGCAACATAGTTGT 58.524 36.000 11.09 0.00 37.82 3.32
4953 5857 2.288640 GCTGATTCTTGGTTTGCTGCTT 60.289 45.455 0.00 0.00 0.00 3.91
5471 6382 2.278013 GGCCGACTTCTACGAGCG 60.278 66.667 0.00 0.00 0.00 5.03
5783 6694 2.289569 ACCCATTACTCGCACGGTTTTA 60.290 45.455 0.00 0.00 0.00 1.52
5849 6760 3.716353 AGGTACATGGATATGTTGAGCCA 59.284 43.478 0.00 0.00 45.01 4.75
6113 7024 0.253044 TTGATCTGCAGCCACTACCC 59.747 55.000 9.47 0.00 0.00 3.69
6407 7318 0.387202 TTGGTGAATTTGCCCGTGTG 59.613 50.000 0.00 0.00 0.00 3.82
6470 7381 6.595682 TCTTGACAAAGGGGAGATCATTATC 58.404 40.000 0.00 0.00 33.90 1.75
6875 7795 0.842467 AGAGTGGTAAGCCTGCCCTT 60.842 55.000 0.00 0.00 35.27 3.95
7019 7945 4.163441 TGGAGGTGTCAATGAAGAAACA 57.837 40.909 0.00 0.00 0.00 2.83
7079 8005 0.984995 AGGGCCTTAGTGACCTTGAC 59.015 55.000 0.00 0.00 0.00 3.18
7511 8437 4.711399 ACAAGAACCCCAACTACTACAAC 58.289 43.478 0.00 0.00 0.00 3.32
7676 8602 4.272991 GCGTACTACTACATCAGCTACACT 59.727 45.833 0.00 0.00 0.00 3.55
7679 8605 6.073873 CGTACTACTACATCAGCTACACTACC 60.074 46.154 0.00 0.00 0.00 3.18
7682 8608 6.834451 ACTACTACATCAGCTACACTACCATT 59.166 38.462 0.00 0.00 0.00 3.16
7733 8659 3.867857 GACCAAGATGAAAGGTCTCCTC 58.132 50.000 0.00 0.00 46.45 3.71
7748 8674 4.142138 GGTCTCCTCGAAATTCTAGCTTCA 60.142 45.833 0.00 0.00 0.00 3.02
8174 9100 2.438392 TGATCTGGCTGAGATGAGCATT 59.562 45.455 3.81 0.00 41.91 3.56
8351 9277 1.302431 TGACATGACCAACCTGCCG 60.302 57.895 0.00 0.00 0.00 5.69
8510 9436 2.259818 CTCGAGTTCACCGCTGCT 59.740 61.111 3.62 0.00 0.00 4.24
8564 9490 2.379972 CTGATGTCGGACTCCTACCTT 58.620 52.381 9.88 0.00 0.00 3.50
8597 9523 1.396301 GAGTACGAGTTCACCGTCGAT 59.604 52.381 0.00 0.00 40.95 3.59
8640 9566 5.855045 ACTGATTTCGAACACCTAGAACTT 58.145 37.500 0.00 0.00 0.00 2.66
8670 9596 4.853924 ACTGGGTTTTTGCTCTTATGTG 57.146 40.909 0.00 0.00 0.00 3.21
8671 9597 4.469657 ACTGGGTTTTTGCTCTTATGTGA 58.530 39.130 0.00 0.00 0.00 3.58
8672 9598 4.520492 ACTGGGTTTTTGCTCTTATGTGAG 59.480 41.667 0.00 0.00 37.16 3.51
8679 9619 4.335400 TTGCTCTTATGTGAGTGTGACA 57.665 40.909 0.00 0.00 36.51 3.58
8741 9684 5.947443 CTGAAGTTTAGCTTTGATTCAGGG 58.053 41.667 17.23 2.04 39.80 4.45
8742 9685 5.385198 TGAAGTTTAGCTTTGATTCAGGGT 58.615 37.500 0.00 0.00 37.59 4.34
8743 9686 6.539173 TGAAGTTTAGCTTTGATTCAGGGTA 58.461 36.000 0.00 0.00 37.59 3.69
8744 9687 7.001674 TGAAGTTTAGCTTTGATTCAGGGTAA 58.998 34.615 0.00 8.34 37.59 2.85
8745 9688 7.174946 TGAAGTTTAGCTTTGATTCAGGGTAAG 59.825 37.037 0.00 3.63 37.59 2.34
8852 9801 8.620116 TGATGTTCTTATGTGATGTTTCTTGA 57.380 30.769 0.00 0.00 0.00 3.02
8853 9802 9.234827 TGATGTTCTTATGTGATGTTTCTTGAT 57.765 29.630 0.00 0.00 0.00 2.57
8854 9803 9.713740 GATGTTCTTATGTGATGTTTCTTGATC 57.286 33.333 0.00 0.00 0.00 2.92
8855 9804 8.853077 TGTTCTTATGTGATGTTTCTTGATCT 57.147 30.769 0.00 0.00 0.00 2.75
8856 9805 8.724229 TGTTCTTATGTGATGTTTCTTGATCTG 58.276 33.333 0.00 0.00 0.00 2.90
8857 9806 8.939929 GTTCTTATGTGATGTTTCTTGATCTGA 58.060 33.333 0.00 0.00 0.00 3.27
8858 9807 9.676861 TTCTTATGTGATGTTTCTTGATCTGAT 57.323 29.630 0.00 0.00 0.00 2.90
8862 9811 7.748691 TGTGATGTTTCTTGATCTGATTTGA 57.251 32.000 0.00 0.00 0.00 2.69
8863 9812 7.587629 TGTGATGTTTCTTGATCTGATTTGAC 58.412 34.615 0.00 0.00 0.00 3.18
8864 9813 7.229106 TGTGATGTTTCTTGATCTGATTTGACA 59.771 33.333 0.00 0.00 0.00 3.58
8868 9817 7.999679 TGTTTCTTGATCTGATTTGACAAGTT 58.000 30.769 13.34 0.00 38.94 2.66
8923 9872 6.476863 CACGTTATTGTGTTTTTGTCAGTC 57.523 37.500 0.00 0.00 35.12 3.51
8987 9936 3.886123 CCTTGGTGGTACAATAGAAGGG 58.114 50.000 0.00 0.00 44.16 3.95
8988 9937 3.521937 CCTTGGTGGTACAATAGAAGGGA 59.478 47.826 0.00 0.00 44.16 4.20
8990 9939 5.340027 CCTTGGTGGTACAATAGAAGGGAAT 60.340 44.000 0.00 0.00 44.16 3.01
8991 9940 6.126594 CCTTGGTGGTACAATAGAAGGGAATA 60.127 42.308 0.00 0.00 44.16 1.75
8993 9942 7.460214 TGGTGGTACAATAGAAGGGAATAAT 57.540 36.000 0.00 0.00 44.16 1.28
8994 9943 7.287061 TGGTGGTACAATAGAAGGGAATAATG 58.713 38.462 0.00 0.00 44.16 1.90
8995 9944 6.206829 GGTGGTACAATAGAAGGGAATAATGC 59.793 42.308 0.00 0.00 44.16 3.56
8996 9945 5.995282 TGGTACAATAGAAGGGAATAATGCG 59.005 40.000 0.00 0.00 31.92 4.73
8997 9946 5.411669 GGTACAATAGAAGGGAATAATGCGG 59.588 44.000 0.00 0.00 0.00 5.69
8998 9947 5.048846 ACAATAGAAGGGAATAATGCGGT 57.951 39.130 0.00 0.00 0.00 5.68
8999 9948 4.821805 ACAATAGAAGGGAATAATGCGGTG 59.178 41.667 0.00 0.00 0.00 4.94
9000 9949 2.348411 AGAAGGGAATAATGCGGTGG 57.652 50.000 0.00 0.00 0.00 4.61
9001 9950 1.843851 AGAAGGGAATAATGCGGTGGA 59.156 47.619 0.00 0.00 0.00 4.02
9002 9951 2.443255 AGAAGGGAATAATGCGGTGGAT 59.557 45.455 0.00 0.00 0.00 3.41
9003 9952 2.568623 AGGGAATAATGCGGTGGATC 57.431 50.000 0.00 0.00 0.00 3.36
9004 9953 2.057922 AGGGAATAATGCGGTGGATCT 58.942 47.619 0.00 0.00 0.00 2.75
9005 9954 2.039084 AGGGAATAATGCGGTGGATCTC 59.961 50.000 0.00 0.00 0.00 2.75
9006 9955 2.039084 GGGAATAATGCGGTGGATCTCT 59.961 50.000 0.00 0.00 0.00 3.10
9016 9965 0.827368 GTGGATCTCTCTTTCGGGCT 59.173 55.000 0.00 0.00 0.00 5.19
9023 9972 1.137282 CTCTCTTTCGGGCTAGGGAAC 59.863 57.143 0.00 0.00 0.00 3.62
9024 9973 0.179108 CTCTTTCGGGCTAGGGAACG 60.179 60.000 0.00 0.00 0.00 3.95
9041 9991 2.176273 CGGAAAGATGGCGGCAGAG 61.176 63.158 19.29 0.00 0.00 3.35
9047 9997 4.845580 ATGGCGGCAGAGGCTTCG 62.846 66.667 19.29 0.00 40.87 3.79
9050 10000 4.443266 GCGGCAGAGGCTTCGAGT 62.443 66.667 0.00 0.00 40.87 4.18
9101 10051 3.080121 AAGGAGCTGGGCCTCTCG 61.080 66.667 16.35 0.49 33.76 4.04
9125 10075 2.223829 GGACGATCTCGATGATGTGGTT 60.224 50.000 6.60 0.00 43.02 3.67
9135 10085 3.064408 CGATGATGTGGTTGTGGATCAAG 59.936 47.826 0.00 0.00 36.66 3.02
9136 10086 2.794103 TGATGTGGTTGTGGATCAAGG 58.206 47.619 0.00 0.00 36.66 3.61
9208 10158 3.074412 CCGAGAAACAGTACAGCCAATT 58.926 45.455 0.00 0.00 0.00 2.32
9209 10159 3.125316 CCGAGAAACAGTACAGCCAATTC 59.875 47.826 0.00 0.00 0.00 2.17
9210 10160 3.181530 CGAGAAACAGTACAGCCAATTCG 60.182 47.826 0.00 0.00 0.00 3.34
9242 10192 4.802051 ATGCGTGCGGCCTGGAAT 62.802 61.111 0.00 0.00 42.61 3.01
9257 10207 4.077822 CCTGGAATCTTGCTCAGAAAGTT 58.922 43.478 0.00 0.00 34.16 2.66
9263 10213 7.766278 TGGAATCTTGCTCAGAAAGTTAGTATC 59.234 37.037 0.00 0.00 34.16 2.24
9265 10215 6.605471 TCTTGCTCAGAAAGTTAGTATCCA 57.395 37.500 0.00 0.00 0.00 3.41
9284 10234 0.478507 ACCCCCTGAAAGACAACCTG 59.521 55.000 0.00 0.00 34.07 4.00
9285 10235 0.895559 CCCCCTGAAAGACAACCTGC 60.896 60.000 0.00 0.00 34.07 4.85
9293 10243 1.959042 AAGACAACCTGCACACTCTG 58.041 50.000 0.00 0.00 0.00 3.35
9326 10276 3.218227 GGGGGCTAGGAACGAGTC 58.782 66.667 0.00 0.00 34.09 3.36
9347 10297 4.586235 GGGGATGGACCATGGGCG 62.586 72.222 18.09 0.00 41.20 6.13
9368 10318 0.739462 TTCGTGGTGATGCGGTGATC 60.739 55.000 0.00 0.00 0.00 2.92
9369 10319 2.173669 CGTGGTGATGCGGTGATCC 61.174 63.158 0.00 0.00 0.00 3.36
9380 10330 1.153429 GGTGATCCTGGCACCGTAC 60.153 63.158 7.59 0.00 45.50 3.67
9386 10336 2.577059 CTGGCACCGTACGATGGT 59.423 61.111 18.76 2.91 38.21 3.55
9405 10355 3.879932 GTTTCTCAAAACCGTCCTCTG 57.120 47.619 0.00 0.00 39.10 3.35
9407 10357 3.553828 TTCTCAAAACCGTCCTCTGTT 57.446 42.857 0.00 0.00 0.00 3.16
9417 10367 4.024670 ACCGTCCTCTGTTAAGCTAGATT 58.975 43.478 0.00 0.00 0.00 2.40
9428 10378 5.590259 TGTTAAGCTAGATTGGCTGGAAATC 59.410 40.000 2.82 0.00 40.19 2.17
9431 10381 2.292845 GCTAGATTGGCTGGAAATCTGC 59.707 50.000 8.55 6.80 42.82 4.26
9435 10385 0.895100 TTGGCTGGAAATCTGCGCTT 60.895 50.000 9.73 0.00 40.65 4.68
9458 10408 3.848975 AGATTCATGACTTTCCAGAGGGT 59.151 43.478 0.00 0.00 34.93 4.34
9466 10416 6.636454 TGACTTTCCAGAGGGTTATGTATT 57.364 37.500 0.00 0.00 34.93 1.89
9467 10417 7.743116 TGACTTTCCAGAGGGTTATGTATTA 57.257 36.000 0.00 0.00 34.93 0.98
9468 10418 8.331931 TGACTTTCCAGAGGGTTATGTATTAT 57.668 34.615 0.00 0.00 34.93 1.28
9503 10453 1.270465 GCTGCAAAGCTGGGTGATTTT 60.270 47.619 0.00 0.00 31.16 1.82
9548 10498 6.477688 CGCATGATTTTGAAGGCAATTTCTAT 59.522 34.615 0.00 0.00 33.25 1.98
9551 10501 7.389803 TGATTTTGAAGGCAATTTCTATCGA 57.610 32.000 0.00 0.00 33.25 3.59
9560 10510 3.375299 GCAATTTCTATCGAGTGCAGGTT 59.625 43.478 0.00 0.00 0.00 3.50
9567 10517 6.954487 TCTATCGAGTGCAGGTTAAGATTA 57.046 37.500 0.00 0.00 0.00 1.75
9613 10563 1.128188 GTGTCTCTGAAGGTGGGGGT 61.128 60.000 0.00 0.00 0.00 4.95
9614 10564 1.127567 TGTCTCTGAAGGTGGGGGTG 61.128 60.000 0.00 0.00 0.00 4.61
9615 10565 1.538876 TCTCTGAAGGTGGGGGTGG 60.539 63.158 0.00 0.00 0.00 4.61
9616 10566 2.531685 TCTGAAGGTGGGGGTGGG 60.532 66.667 0.00 0.00 0.00 4.61
9617 10567 3.661648 CTGAAGGTGGGGGTGGGG 61.662 72.222 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.921637 TGCCTTGAGTTATATTTAAAGGTTTTG 57.078 29.630 0.00 0.00 37.18 2.44
8 9 9.923143 GTTGCCTTGAGTTATATTTAAAGGTTT 57.077 29.630 0.00 0.00 37.18 3.27
9 10 8.528643 GGTTGCCTTGAGTTATATTTAAAGGTT 58.471 33.333 0.00 0.00 37.18 3.50
11 12 8.062065 TGGTTGCCTTGAGTTATATTTAAAGG 57.938 34.615 0.00 0.00 37.76 3.11
15 16 9.914834 ACTAATGGTTGCCTTGAGTTATATTTA 57.085 29.630 0.00 0.00 0.00 1.40
16 17 8.823220 ACTAATGGTTGCCTTGAGTTATATTT 57.177 30.769 0.00 0.00 0.00 1.40
17 18 7.502561 GGACTAATGGTTGCCTTGAGTTATATT 59.497 37.037 0.00 0.00 0.00 1.28
18 19 6.998673 GGACTAATGGTTGCCTTGAGTTATAT 59.001 38.462 0.00 0.00 0.00 0.86
19 20 6.069905 TGGACTAATGGTTGCCTTGAGTTATA 60.070 38.462 0.00 0.00 0.00 0.98
20 21 5.193679 GGACTAATGGTTGCCTTGAGTTAT 58.806 41.667 0.00 0.00 0.00 1.89
21 22 4.042311 TGGACTAATGGTTGCCTTGAGTTA 59.958 41.667 0.00 0.00 0.00 2.24
22 23 3.181434 TGGACTAATGGTTGCCTTGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
23 24 2.375174 TGGACTAATGGTTGCCTTGAGT 59.625 45.455 0.00 0.00 0.00 3.41
24 25 3.071874 TGGACTAATGGTTGCCTTGAG 57.928 47.619 0.00 0.00 0.00 3.02
25 26 3.737559 ATGGACTAATGGTTGCCTTGA 57.262 42.857 0.00 0.00 0.00 3.02
26 27 4.780815 TCTATGGACTAATGGTTGCCTTG 58.219 43.478 0.00 0.00 0.00 3.61
27 28 4.721776 TCTCTATGGACTAATGGTTGCCTT 59.278 41.667 0.00 0.00 0.00 4.35
28 29 4.298626 TCTCTATGGACTAATGGTTGCCT 58.701 43.478 0.00 0.00 0.00 4.75
29 30 4.689612 TCTCTATGGACTAATGGTTGCC 57.310 45.455 0.00 0.00 0.00 4.52
30 31 6.058183 ACAATCTCTATGGACTAATGGTTGC 58.942 40.000 0.00 0.00 0.00 4.17
31 32 7.275183 TGACAATCTCTATGGACTAATGGTTG 58.725 38.462 0.00 0.00 0.00 3.77
32 33 7.437713 TGACAATCTCTATGGACTAATGGTT 57.562 36.000 0.00 0.00 0.00 3.67
33 34 7.290948 TGATGACAATCTCTATGGACTAATGGT 59.709 37.037 0.00 0.00 33.61 3.55
34 35 7.674120 TGATGACAATCTCTATGGACTAATGG 58.326 38.462 0.00 0.00 33.61 3.16
35 36 9.722184 ATTGATGACAATCTCTATGGACTAATG 57.278 33.333 0.00 0.00 42.20 1.90
37 38 9.551734 CAATTGATGACAATCTCTATGGACTAA 57.448 33.333 0.00 0.00 44.67 2.24
38 39 7.658982 GCAATTGATGACAATCTCTATGGACTA 59.341 37.037 10.34 0.00 44.67 2.59
39 40 6.485984 GCAATTGATGACAATCTCTATGGACT 59.514 38.462 10.34 0.00 44.67 3.85
40 41 6.293845 GGCAATTGATGACAATCTCTATGGAC 60.294 42.308 10.34 0.00 44.67 4.02
41 42 5.766670 GGCAATTGATGACAATCTCTATGGA 59.233 40.000 10.34 0.00 44.67 3.41
42 43 5.533528 TGGCAATTGATGACAATCTCTATGG 59.466 40.000 10.34 0.00 46.71 2.74
43 44 6.628919 TGGCAATTGATGACAATCTCTATG 57.371 37.500 10.34 0.00 46.71 2.23
53 54 4.574013 TGTTTGGTTTTGGCAATTGATGAC 59.426 37.500 10.34 0.00 37.68 3.06
54 55 4.774124 TGTTTGGTTTTGGCAATTGATGA 58.226 34.783 10.34 0.00 0.00 2.92
55 56 5.453648 CATGTTTGGTTTTGGCAATTGATG 58.546 37.500 10.34 0.00 0.00 3.07
56 57 4.519730 CCATGTTTGGTTTTGGCAATTGAT 59.480 37.500 10.34 0.00 38.30 2.57
57 58 3.881688 CCATGTTTGGTTTTGGCAATTGA 59.118 39.130 10.34 0.00 38.30 2.57
58 59 3.004524 CCCATGTTTGGTTTTGGCAATTG 59.995 43.478 0.00 0.00 41.91 2.32
59 60 3.220940 CCCATGTTTGGTTTTGGCAATT 58.779 40.909 0.00 0.00 41.91 2.32
60 61 2.488710 CCCCATGTTTGGTTTTGGCAAT 60.489 45.455 0.00 0.00 41.91 3.56
61 62 1.133976 CCCCATGTTTGGTTTTGGCAA 60.134 47.619 0.00 0.00 41.91 4.52
62 63 0.471617 CCCCATGTTTGGTTTTGGCA 59.528 50.000 0.00 0.00 41.91 4.92
63 64 0.250684 CCCCCATGTTTGGTTTTGGC 60.251 55.000 0.00 0.00 41.91 4.52
64 65 0.250684 GCCCCCATGTTTGGTTTTGG 60.251 55.000 0.00 0.00 41.91 3.28
65 66 0.471617 TGCCCCCATGTTTGGTTTTG 59.528 50.000 0.00 0.00 41.91 2.44
66 67 1.350684 GATGCCCCCATGTTTGGTTTT 59.649 47.619 0.00 0.00 41.91 2.43
67 68 0.983467 GATGCCCCCATGTTTGGTTT 59.017 50.000 0.00 0.00 41.91 3.27
68 69 1.257055 CGATGCCCCCATGTTTGGTT 61.257 55.000 0.00 0.00 41.91 3.67
69 70 1.682005 CGATGCCCCCATGTTTGGT 60.682 57.895 0.00 0.00 41.91 3.67
70 71 3.080045 GCGATGCCCCCATGTTTGG 62.080 63.158 0.00 0.00 43.23 3.28
71 72 1.678598 ATGCGATGCCCCCATGTTTG 61.679 55.000 0.00 0.00 0.00 2.93
72 73 1.381599 ATGCGATGCCCCCATGTTT 60.382 52.632 0.00 0.00 0.00 2.83
73 74 2.129146 CATGCGATGCCCCCATGTT 61.129 57.895 0.00 0.00 33.46 2.71
74 75 2.520020 CATGCGATGCCCCCATGT 60.520 61.111 0.00 0.00 33.46 3.21
75 76 2.079020 GAACATGCGATGCCCCCATG 62.079 60.000 0.00 0.00 41.49 3.66
76 77 1.829533 GAACATGCGATGCCCCCAT 60.830 57.895 0.00 0.00 0.00 4.00
77 78 2.440065 GAACATGCGATGCCCCCA 60.440 61.111 0.00 0.00 0.00 4.96
78 79 1.322538 AAAGAACATGCGATGCCCCC 61.323 55.000 0.00 0.00 0.00 5.40
79 80 0.101219 GAAAGAACATGCGATGCCCC 59.899 55.000 0.00 0.00 0.00 5.80
80 81 0.810648 TGAAAGAACATGCGATGCCC 59.189 50.000 0.00 0.00 0.00 5.36
81 82 1.470098 AGTGAAAGAACATGCGATGCC 59.530 47.619 0.00 0.00 0.00 4.40
82 83 2.778659 GAGTGAAAGAACATGCGATGC 58.221 47.619 0.00 0.00 0.00 3.91
83 84 2.413112 ACGAGTGAAAGAACATGCGATG 59.587 45.455 0.00 0.00 0.00 3.84
84 85 2.413112 CACGAGTGAAAGAACATGCGAT 59.587 45.455 0.00 0.00 0.00 4.58
85 86 1.792367 CACGAGTGAAAGAACATGCGA 59.208 47.619 0.00 0.00 0.00 5.10
86 87 1.136252 CCACGAGTGAAAGAACATGCG 60.136 52.381 4.59 0.00 0.00 4.73
87 88 1.400242 GCCACGAGTGAAAGAACATGC 60.400 52.381 4.59 0.00 0.00 4.06
88 89 1.872952 TGCCACGAGTGAAAGAACATG 59.127 47.619 4.59 0.00 0.00 3.21
89 90 1.873591 GTGCCACGAGTGAAAGAACAT 59.126 47.619 4.59 0.00 0.00 2.71
90 91 1.134521 AGTGCCACGAGTGAAAGAACA 60.135 47.619 4.59 0.00 0.00 3.18
91 92 1.261619 CAGTGCCACGAGTGAAAGAAC 59.738 52.381 4.59 0.00 0.00 3.01
92 93 1.581934 CAGTGCCACGAGTGAAAGAA 58.418 50.000 4.59 0.00 0.00 2.52
93 94 0.249868 CCAGTGCCACGAGTGAAAGA 60.250 55.000 4.59 0.00 0.00 2.52
94 95 0.532862 ACCAGTGCCACGAGTGAAAG 60.533 55.000 4.59 0.00 0.00 2.62
95 96 0.813610 CACCAGTGCCACGAGTGAAA 60.814 55.000 13.08 0.00 30.77 2.69
96 97 1.227527 CACCAGTGCCACGAGTGAA 60.228 57.895 13.08 0.00 30.77 3.18
97 98 1.471829 ATCACCAGTGCCACGAGTGA 61.472 55.000 20.28 20.28 38.63 3.41
98 99 1.004560 ATCACCAGTGCCACGAGTG 60.005 57.895 12.39 12.39 0.00 3.51
99 100 1.188219 AGATCACCAGTGCCACGAGT 61.188 55.000 0.00 0.00 0.00 4.18
100 101 0.036952 AAGATCACCAGTGCCACGAG 60.037 55.000 0.00 0.00 0.00 4.18
101 102 1.262417 TAAGATCACCAGTGCCACGA 58.738 50.000 0.00 0.00 0.00 4.35
177 182 5.734220 GCAACGGGTCATCTAGTCGTATAAA 60.734 44.000 0.00 0.00 33.52 1.40
205 242 2.273449 CTCCCTGCATTCGGCCTT 59.727 61.111 0.00 0.00 43.89 4.35
218 255 2.269172 GCTCGTTAACTAGTTGCTCCC 58.731 52.381 18.56 0.76 0.00 4.30
219 256 1.918609 CGCTCGTTAACTAGTTGCTCC 59.081 52.381 18.56 2.45 0.00 4.70
220 257 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
221 258 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
222 259 1.347320 AGCGCTCGTTAACTAGTTGC 58.653 50.000 18.56 11.18 0.00 4.17
223 260 3.243336 AGAAGCGCTCGTTAACTAGTTG 58.757 45.455 18.56 1.62 0.00 3.16
224 261 3.572604 AGAAGCGCTCGTTAACTAGTT 57.427 42.857 12.06 13.68 0.00 2.24
225 262 3.572604 AAGAAGCGCTCGTTAACTAGT 57.427 42.857 12.06 0.00 0.00 2.57
226 263 3.060895 CCAAAGAAGCGCTCGTTAACTAG 59.939 47.826 12.06 3.24 0.00 2.57
227 264 2.991190 CCAAAGAAGCGCTCGTTAACTA 59.009 45.455 12.06 0.00 0.00 2.24
228 265 1.798813 CCAAAGAAGCGCTCGTTAACT 59.201 47.619 12.06 0.00 0.00 2.24
229 266 1.136057 CCCAAAGAAGCGCTCGTTAAC 60.136 52.381 12.06 0.00 0.00 2.01
230 267 1.153353 CCCAAAGAAGCGCTCGTTAA 58.847 50.000 12.06 0.00 0.00 2.01
231 268 0.319083 TCCCAAAGAAGCGCTCGTTA 59.681 50.000 12.06 0.00 0.00 3.18
232 269 0.951040 CTCCCAAAGAAGCGCTCGTT 60.951 55.000 12.06 3.99 0.00 3.85
233 270 1.374758 CTCCCAAAGAAGCGCTCGT 60.375 57.895 12.06 0.00 0.00 4.18
234 271 2.744768 GCTCCCAAAGAAGCGCTCG 61.745 63.158 12.06 0.00 0.00 5.03
235 272 2.402572 GGCTCCCAAAGAAGCGCTC 61.403 63.158 12.06 4.30 0.00 5.03
236 273 2.360475 GGCTCCCAAAGAAGCGCT 60.360 61.111 2.64 2.64 0.00 5.92
237 274 2.360475 AGGCTCCCAAAGAAGCGC 60.360 61.111 0.00 0.00 0.00 5.92
238 275 2.103042 CGAGGCTCCCAAAGAAGCG 61.103 63.158 9.32 0.00 0.00 4.68
239 276 2.402572 GCGAGGCTCCCAAAGAAGC 61.403 63.158 9.32 0.00 0.00 3.86
240 277 0.606401 TTGCGAGGCTCCCAAAGAAG 60.606 55.000 11.99 0.00 0.00 2.85
241 278 0.889186 GTTGCGAGGCTCCCAAAGAA 60.889 55.000 15.69 0.00 0.00 2.52
242 279 1.302511 GTTGCGAGGCTCCCAAAGA 60.303 57.895 15.69 0.00 0.00 2.52
243 280 2.680913 CGTTGCGAGGCTCCCAAAG 61.681 63.158 15.69 13.85 0.00 2.77
244 281 2.463589 ATCGTTGCGAGGCTCCCAAA 62.464 55.000 15.69 2.66 39.91 3.28
245 282 2.852495 GATCGTTGCGAGGCTCCCAA 62.852 60.000 10.44 10.44 39.91 4.12
246 283 3.371097 GATCGTTGCGAGGCTCCCA 62.371 63.158 9.32 2.72 39.91 4.37
247 284 2.586357 GATCGTTGCGAGGCTCCC 60.586 66.667 9.32 0.00 39.91 4.30
248 285 1.447838 TTGATCGTTGCGAGGCTCC 60.448 57.895 9.32 2.37 39.91 4.70
249 286 1.014044 TGTTGATCGTTGCGAGGCTC 61.014 55.000 3.87 3.87 39.91 4.70
250 287 0.391661 ATGTTGATCGTTGCGAGGCT 60.392 50.000 0.00 0.00 39.91 4.58
251 288 0.026803 GATGTTGATCGTTGCGAGGC 59.973 55.000 0.00 0.00 39.91 4.70
252 289 1.061131 GTGATGTTGATCGTTGCGAGG 59.939 52.381 0.00 0.00 39.91 4.63
253 290 1.995484 AGTGATGTTGATCGTTGCGAG 59.005 47.619 0.00 0.00 39.91 5.03
254 291 2.078849 AGTGATGTTGATCGTTGCGA 57.921 45.000 0.00 0.00 41.13 5.10
255 292 2.498905 CAAGTGATGTTGATCGTTGCG 58.501 47.619 0.00 0.00 0.00 4.85
256 293 2.226437 ACCAAGTGATGTTGATCGTTGC 59.774 45.455 0.00 0.00 0.00 4.17
257 294 3.813800 CACCAAGTGATGTTGATCGTTG 58.186 45.455 0.00 0.00 35.23 4.10
258 295 2.226437 GCACCAAGTGATGTTGATCGTT 59.774 45.455 0.00 0.00 35.23 3.85
259 296 1.806542 GCACCAAGTGATGTTGATCGT 59.193 47.619 0.00 0.00 35.23 3.73
260 297 1.201954 CGCACCAAGTGATGTTGATCG 60.202 52.381 0.00 0.00 35.23 3.69
261 298 1.466360 GCGCACCAAGTGATGTTGATC 60.466 52.381 0.30 0.00 35.23 2.92
262 299 0.523072 GCGCACCAAGTGATGTTGAT 59.477 50.000 0.30 0.00 35.23 2.57
263 300 0.534877 AGCGCACCAAGTGATGTTGA 60.535 50.000 11.47 0.00 35.23 3.18
264 301 0.110056 GAGCGCACCAAGTGATGTTG 60.110 55.000 11.47 0.00 35.23 3.33
265 302 0.250467 AGAGCGCACCAAGTGATGTT 60.250 50.000 11.47 0.00 35.23 2.71
266 303 0.250467 AAGAGCGCACCAAGTGATGT 60.250 50.000 11.47 0.00 35.23 3.06
267 304 0.167470 CAAGAGCGCACCAAGTGATG 59.833 55.000 11.47 0.00 35.23 3.07
268 305 0.957395 CCAAGAGCGCACCAAGTGAT 60.957 55.000 11.47 0.00 35.23 3.06
269 306 1.597854 CCAAGAGCGCACCAAGTGA 60.598 57.895 11.47 0.00 35.23 3.41
270 307 2.949106 CCAAGAGCGCACCAAGTG 59.051 61.111 11.47 0.00 36.51 3.16
271 308 2.980233 GCCAAGAGCGCACCAAGT 60.980 61.111 11.47 0.00 0.00 3.16
272 309 3.741476 GGCCAAGAGCGCACCAAG 61.741 66.667 11.47 0.00 45.17 3.61
273 310 3.866379 ATGGCCAAGAGCGCACCAA 62.866 57.895 10.96 0.00 45.17 3.67
274 311 3.866379 AATGGCCAAGAGCGCACCA 62.866 57.895 10.96 7.49 45.17 4.17
275 312 3.056313 GAATGGCCAAGAGCGCACC 62.056 63.158 10.96 0.00 45.17 5.01
276 313 2.486966 GAATGGCCAAGAGCGCAC 59.513 61.111 10.96 2.25 45.17 5.34
277 314 3.126879 CGAATGGCCAAGAGCGCA 61.127 61.111 10.96 0.00 45.17 6.09
278 315 4.543084 GCGAATGGCCAAGAGCGC 62.543 66.667 22.62 22.62 45.17 5.92
296 333 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
297 334 4.702081 GTCCAGAGCGCGACACGT 62.702 66.667 12.10 0.00 46.11 4.49
329 366 9.234384 TCGAAAATGCGTGTAGAAAAATAAAAA 57.766 25.926 0.00 0.00 0.00 1.94
330 367 8.683774 GTCGAAAATGCGTGTAGAAAAATAAAA 58.316 29.630 0.00 0.00 0.00 1.52
331 368 8.071368 AGTCGAAAATGCGTGTAGAAAAATAAA 58.929 29.630 0.00 0.00 0.00 1.40
332 369 7.577979 AGTCGAAAATGCGTGTAGAAAAATAA 58.422 30.769 0.00 0.00 0.00 1.40
333 370 7.124347 AGTCGAAAATGCGTGTAGAAAAATA 57.876 32.000 0.00 0.00 0.00 1.40
334 371 5.997385 AGTCGAAAATGCGTGTAGAAAAAT 58.003 33.333 0.00 0.00 0.00 1.82
335 372 5.412526 AGTCGAAAATGCGTGTAGAAAAA 57.587 34.783 0.00 0.00 0.00 1.94
336 373 5.412526 AAGTCGAAAATGCGTGTAGAAAA 57.587 34.783 0.00 0.00 0.00 2.29
337 374 5.412526 AAAGTCGAAAATGCGTGTAGAAA 57.587 34.783 0.00 0.00 0.00 2.52
338 375 5.412526 AAAAGTCGAAAATGCGTGTAGAA 57.587 34.783 0.00 0.00 0.00 2.10
339 376 5.412526 AAAAAGTCGAAAATGCGTGTAGA 57.587 34.783 0.00 0.00 0.00 2.59
340 377 7.479553 GTTTAAAAAGTCGAAAATGCGTGTAG 58.520 34.615 0.00 0.00 0.00 2.74
341 378 6.138858 CGTTTAAAAAGTCGAAAATGCGTGTA 59.861 34.615 0.00 0.00 0.00 2.90
342 379 5.052895 CGTTTAAAAAGTCGAAAATGCGTGT 60.053 36.000 0.00 0.00 0.00 4.49
343 380 5.343603 CGTTTAAAAAGTCGAAAATGCGTG 58.656 37.500 0.00 0.00 0.00 5.34
344 381 4.438471 CCGTTTAAAAAGTCGAAAATGCGT 59.562 37.500 0.00 0.00 0.00 5.24
345 382 4.438471 ACCGTTTAAAAAGTCGAAAATGCG 59.562 37.500 0.00 0.00 0.00 4.73
346 383 5.876576 ACCGTTTAAAAAGTCGAAAATGC 57.123 34.783 0.00 0.00 0.00 3.56
381 418 6.470877 CGAGAGAAAACCAAAACATCGAAAAA 59.529 34.615 0.00 0.00 0.00 1.94
382 419 5.968848 CGAGAGAAAACCAAAACATCGAAAA 59.031 36.000 0.00 0.00 0.00 2.29
383 420 5.504994 CCGAGAGAAAACCAAAACATCGAAA 60.505 40.000 0.00 0.00 0.00 3.46
384 421 4.024387 CCGAGAGAAAACCAAAACATCGAA 60.024 41.667 0.00 0.00 0.00 3.71
385 422 3.496884 CCGAGAGAAAACCAAAACATCGA 59.503 43.478 0.00 0.00 0.00 3.59
386 423 3.250040 ACCGAGAGAAAACCAAAACATCG 59.750 43.478 0.00 0.00 0.00 3.84
387 424 4.515567 AGACCGAGAGAAAACCAAAACATC 59.484 41.667 0.00 0.00 0.00 3.06
388 425 4.461198 AGACCGAGAGAAAACCAAAACAT 58.539 39.130 0.00 0.00 0.00 2.71
389 426 3.881220 AGACCGAGAGAAAACCAAAACA 58.119 40.909 0.00 0.00 0.00 2.83
390 427 4.261072 GGAAGACCGAGAGAAAACCAAAAC 60.261 45.833 0.00 0.00 0.00 2.43
391 428 3.881089 GGAAGACCGAGAGAAAACCAAAA 59.119 43.478 0.00 0.00 0.00 2.44
392 429 3.118186 TGGAAGACCGAGAGAAAACCAAA 60.118 43.478 0.00 0.00 39.42 3.28
393 430 2.436542 TGGAAGACCGAGAGAAAACCAA 59.563 45.455 0.00 0.00 39.42 3.67
394 431 2.043992 TGGAAGACCGAGAGAAAACCA 58.956 47.619 0.00 0.00 39.42 3.67
395 432 2.833631 TGGAAGACCGAGAGAAAACC 57.166 50.000 0.00 0.00 39.42 3.27
396 433 3.866327 GCTATGGAAGACCGAGAGAAAAC 59.134 47.826 0.00 0.00 39.42 2.43
397 434 3.769844 AGCTATGGAAGACCGAGAGAAAA 59.230 43.478 0.00 0.00 39.42 2.29
398 435 3.366396 AGCTATGGAAGACCGAGAGAAA 58.634 45.455 0.00 0.00 39.42 2.52
399 436 3.019799 AGCTATGGAAGACCGAGAGAA 57.980 47.619 0.00 0.00 39.42 2.87
400 437 2.738587 AGCTATGGAAGACCGAGAGA 57.261 50.000 0.00 0.00 39.42 3.10
401 438 3.810310 AAAGCTATGGAAGACCGAGAG 57.190 47.619 0.00 0.00 39.42 3.20
402 439 3.428999 CGAAAAGCTATGGAAGACCGAGA 60.429 47.826 0.00 0.00 39.42 4.04
403 440 2.860735 CGAAAAGCTATGGAAGACCGAG 59.139 50.000 0.00 0.00 39.42 4.63
404 441 2.494471 TCGAAAAGCTATGGAAGACCGA 59.506 45.455 0.00 0.00 39.42 4.69
405 442 2.888594 TCGAAAAGCTATGGAAGACCG 58.111 47.619 0.00 0.00 39.42 4.79
406 443 4.442706 TGATCGAAAAGCTATGGAAGACC 58.557 43.478 0.00 0.00 0.00 3.85
407 444 6.422776 TTTGATCGAAAAGCTATGGAAGAC 57.577 37.500 0.00 0.00 0.00 3.01
408 445 7.447374 TTTTTGATCGAAAAGCTATGGAAGA 57.553 32.000 15.57 0.00 34.96 2.87
504 541 4.059459 GCACAACCGTGTCTCGCG 62.059 66.667 0.00 0.00 45.50 5.87
505 542 1.772063 AAAGCACAACCGTGTCTCGC 61.772 55.000 0.00 0.00 45.50 5.03
506 543 0.655733 AAAAGCACAACCGTGTCTCG 59.344 50.000 0.00 0.00 45.50 4.04
507 544 2.844122 AAAAAGCACAACCGTGTCTC 57.156 45.000 0.00 0.00 45.50 3.36
508 545 4.911514 ATTAAAAAGCACAACCGTGTCT 57.088 36.364 0.00 0.00 45.50 3.41
509 546 6.141685 CACTAATTAAAAAGCACAACCGTGTC 59.858 38.462 0.00 0.00 45.50 3.67
510 547 5.974751 CACTAATTAAAAAGCACAACCGTGT 59.025 36.000 0.00 0.00 45.50 4.49
511 548 6.141685 GTCACTAATTAAAAAGCACAACCGTG 59.858 38.462 0.00 0.00 46.56 4.94
512 549 6.203647 GTCACTAATTAAAAAGCACAACCGT 58.796 36.000 0.00 0.00 0.00 4.83
513 550 5.338559 CGTCACTAATTAAAAAGCACAACCG 59.661 40.000 0.00 0.00 0.00 4.44
514 551 6.203647 ACGTCACTAATTAAAAAGCACAACC 58.796 36.000 0.00 0.00 0.00 3.77
515 552 6.084551 CGACGTCACTAATTAAAAAGCACAAC 59.915 38.462 17.16 0.00 0.00 3.32
516 553 6.130723 CGACGTCACTAATTAAAAAGCACAA 58.869 36.000 17.16 0.00 0.00 3.33
517 554 5.672051 CGACGTCACTAATTAAAAAGCACA 58.328 37.500 17.16 0.00 0.00 4.57
518 555 4.548457 GCGACGTCACTAATTAAAAAGCAC 59.452 41.667 17.16 0.00 0.00 4.40
519 556 4.377635 GGCGACGTCACTAATTAAAAAGCA 60.378 41.667 17.16 0.00 0.00 3.91
520 557 4.086574 GGCGACGTCACTAATTAAAAAGC 58.913 43.478 17.16 5.55 0.00 3.51
521 558 5.272167 TGGCGACGTCACTAATTAAAAAG 57.728 39.130 17.16 0.00 0.00 2.27
522 559 5.670149 TTGGCGACGTCACTAATTAAAAA 57.330 34.783 17.16 0.00 0.00 1.94
523 560 5.670149 TTTGGCGACGTCACTAATTAAAA 57.330 34.783 17.16 1.74 0.00 1.52
524 561 5.623335 CATTTGGCGACGTCACTAATTAAA 58.377 37.500 17.16 6.92 0.00 1.52
525 562 4.436317 GCATTTGGCGACGTCACTAATTAA 60.436 41.667 17.16 0.00 0.00 1.40
526 563 3.062909 GCATTTGGCGACGTCACTAATTA 59.937 43.478 17.16 0.00 0.00 1.40
527 564 2.159572 GCATTTGGCGACGTCACTAATT 60.160 45.455 17.16 3.85 0.00 1.40
528 565 1.396996 GCATTTGGCGACGTCACTAAT 59.603 47.619 17.16 12.74 0.00 1.73
529 566 0.793861 GCATTTGGCGACGTCACTAA 59.206 50.000 17.16 7.38 0.00 2.24
530 567 2.451693 GCATTTGGCGACGTCACTA 58.548 52.632 17.16 0.00 0.00 2.74
531 568 3.253955 GCATTTGGCGACGTCACT 58.746 55.556 17.16 0.00 0.00 3.41
532 569 0.996727 GTTGCATTTGGCGACGTCAC 60.997 55.000 17.16 5.54 46.48 3.67
533 570 1.281353 GTTGCATTTGGCGACGTCA 59.719 52.632 17.16 0.00 46.48 4.35
534 571 4.130857 GTTGCATTTGGCGACGTC 57.869 55.556 5.18 5.18 46.48 4.34
540 577 0.109132 CCTTCTCGGTTGCATTTGGC 60.109 55.000 0.00 0.00 45.13 4.52
541 578 1.247567 ACCTTCTCGGTTGCATTTGG 58.752 50.000 0.00 0.00 46.37 3.28
552 589 0.245539 TAAGACGGCCAACCTTCTCG 59.754 55.000 2.24 0.00 43.51 4.04
566 603 1.052617 GCCTGAGAGGGGGATAAGAC 58.947 60.000 0.00 0.00 35.37 3.01
588 625 1.000896 CATTCGGGCCTTCCTTGGT 60.001 57.895 0.84 0.00 0.00 3.67
589 626 0.106519 ATCATTCGGGCCTTCCTTGG 60.107 55.000 0.84 0.00 0.00 3.61
590 627 1.312815 GATCATTCGGGCCTTCCTTG 58.687 55.000 0.84 0.00 0.00 3.61
591 628 0.179045 CGATCATTCGGGCCTTCCTT 60.179 55.000 0.84 0.00 41.74 3.36
592 629 1.447643 CGATCATTCGGGCCTTCCT 59.552 57.895 0.84 0.00 41.74 3.36
593 630 4.049393 CGATCATTCGGGCCTTCC 57.951 61.111 0.84 0.00 41.74 3.46
613 650 1.148310 CGTTTGGGTCAGCTGTACAG 58.852 55.000 18.93 18.93 0.00 2.74
664 701 1.630148 GGTTCGAGACGACAGGAATG 58.370 55.000 0.00 0.00 34.89 2.67
665 702 0.170561 CGGTTCGAGACGACAGGAAT 59.829 55.000 5.04 0.00 34.89 3.01
701 745 2.166664 CGGGAATATAGCCTAGGTCAGC 59.833 54.545 11.31 0.00 0.00 4.26
764 808 2.139382 GGGAGAAGAGGGGATGGATTT 58.861 52.381 0.00 0.00 0.00 2.17
767 811 1.318380 GGGGAGAAGAGGGGATGGA 59.682 63.158 0.00 0.00 0.00 3.41
768 812 1.772156 GGGGGAGAAGAGGGGATGG 60.772 68.421 0.00 0.00 0.00 3.51
770 814 0.104197 GATGGGGGAGAAGAGGGGAT 60.104 60.000 0.00 0.00 0.00 3.85
771 815 1.238896 AGATGGGGGAGAAGAGGGGA 61.239 60.000 0.00 0.00 0.00 4.81
772 816 0.766288 GAGATGGGGGAGAAGAGGGG 60.766 65.000 0.00 0.00 0.00 4.79
776 820 0.397254 GTCGGAGATGGGGGAGAAGA 60.397 60.000 0.00 0.00 40.67 2.87
779 824 2.123854 CGTCGGAGATGGGGGAGA 60.124 66.667 0.00 0.00 40.43 3.71
787 832 3.873883 GTCGTCGGCGTCGGAGAT 61.874 66.667 24.52 0.00 40.67 2.75
893 938 1.295423 CTGTTACCTGTGGGTCGGG 59.705 63.158 0.00 0.00 45.98 5.14
919 964 4.423209 AGGAGGGGAGTGAGGGGC 62.423 72.222 0.00 0.00 0.00 5.80
921 966 1.382420 CTGAGGAGGGGAGTGAGGG 60.382 68.421 0.00 0.00 0.00 4.30
922 967 0.041833 TTCTGAGGAGGGGAGTGAGG 59.958 60.000 0.00 0.00 0.00 3.86
923 968 1.190643 GTTCTGAGGAGGGGAGTGAG 58.809 60.000 0.00 0.00 0.00 3.51
924 969 0.252284 GGTTCTGAGGAGGGGAGTGA 60.252 60.000 0.00 0.00 0.00 3.41
925 970 1.268283 GGGTTCTGAGGAGGGGAGTG 61.268 65.000 0.00 0.00 0.00 3.51
926 971 1.081277 GGGTTCTGAGGAGGGGAGT 59.919 63.158 0.00 0.00 0.00 3.85
927 972 0.637195 TAGGGTTCTGAGGAGGGGAG 59.363 60.000 0.00 0.00 0.00 4.30
928 973 0.637195 CTAGGGTTCTGAGGAGGGGA 59.363 60.000 0.00 0.00 0.00 4.81
929 974 1.051556 GCTAGGGTTCTGAGGAGGGG 61.052 65.000 0.00 0.00 0.00 4.79
931 976 1.760029 GAAGCTAGGGTTCTGAGGAGG 59.240 57.143 0.00 0.00 37.13 4.30
932 977 1.760029 GGAAGCTAGGGTTCTGAGGAG 59.240 57.143 8.91 0.00 39.61 3.69
933 978 1.078823 TGGAAGCTAGGGTTCTGAGGA 59.921 52.381 8.91 0.00 39.61 3.71
1347 1437 0.541063 TCTGGGGCTTGTAGACGACA 60.541 55.000 0.00 0.00 35.78 4.35
1458 1548 3.356639 GACGGCGAGCACCTCATCA 62.357 63.158 16.62 0.00 0.00 3.07
1575 1665 2.322355 AATCTGTGATGAGCTTCCCG 57.678 50.000 0.00 0.00 0.00 5.14
1590 1680 1.134007 TCGCTGGCATCATGGAAATCT 60.134 47.619 0.00 0.00 0.00 2.40
1647 1749 5.567430 ACTCCAATATCATCATCCATGGTG 58.433 41.667 12.58 9.69 40.24 4.17
1733 1835 5.636903 AGACTGTAAGCACAATGGGATAT 57.363 39.130 0.00 0.00 37.60 1.63
1864 1967 2.235845 ACTCAGCCACATCATCATCG 57.764 50.000 0.00 0.00 0.00 3.84
1915 2021 4.039609 TGCATATCATCGTCATCCAACTCT 59.960 41.667 0.00 0.00 0.00 3.24
1966 2072 1.913778 AAGCATCAATGTCCTGCACA 58.086 45.000 7.62 0.00 40.18 4.57
2150 2256 3.118454 CCGGTTGCGCAGTACCAG 61.118 66.667 26.44 19.19 34.77 4.00
2263 2369 6.109280 GCATGTAGCTGCTCCAATATTGGG 62.109 50.000 29.93 21.89 43.86 4.12
2290 2396 2.106566 CTCTCCTTTGCAGAGGCTCTA 58.893 52.381 18.26 0.00 41.91 2.43
2347 2453 5.471456 ACTGTCATTGTTAAGAAGCCTCTTG 59.529 40.000 7.87 0.00 42.11 3.02
2557 2663 0.330604 ATGCTGGCACATGGACTTCT 59.669 50.000 0.00 0.00 38.20 2.85
2575 2681 5.103515 AGTTCCATATGGCCTAGGTTTCAAT 60.104 40.000 17.58 0.00 34.44 2.57
2668 2774 1.376553 GCTCTGGACCCTGTTCAGC 60.377 63.158 0.00 0.00 38.92 4.26
3428 3550 1.908340 GCAGTGTCTCTGATGGCCCT 61.908 60.000 0.00 0.00 46.27 5.19
3902 4055 3.878778 ACTGATCTGCCAACTTGGATAC 58.121 45.455 12.37 0.00 40.96 2.24
4175 4342 7.841282 ACAGCTAGTCCATATATGTAAGTGT 57.159 36.000 11.73 3.44 0.00 3.55
4264 4431 0.673333 CACCGCAATGTACAGCCAGA 60.673 55.000 0.33 0.00 0.00 3.86
4275 4442 7.255104 CCACATATAAATACTGAACACCGCAAT 60.255 37.037 0.00 0.00 0.00 3.56
4414 4583 8.090214 AGCAATCTACAAAATGTGCAACTTAAT 58.910 29.630 0.00 0.00 38.04 1.40
4417 4586 5.846203 AGCAATCTACAAAATGTGCAACTT 58.154 33.333 0.00 0.00 38.04 2.66
4456 4626 7.990886 TCAAACAGACACTAATTACCAAAGAGT 59.009 33.333 0.00 0.00 0.00 3.24
4517 4868 4.984194 GCCACATCTGTATGGGCA 57.016 55.556 10.91 0.00 43.48 5.36
4632 5302 2.494870 ACCAATCTCAAGCAAATGCCTC 59.505 45.455 0.94 0.00 43.38 4.70
4723 5393 6.457528 GCTGAGAATTTCTTTTCCTATCACCG 60.458 42.308 0.00 0.00 0.00 4.94
4781 5451 4.158579 TGCGCCCATATACAACAAATGAAA 59.841 37.500 4.18 0.00 0.00 2.69
4784 5454 3.706802 TGCGCCCATATACAACAAATG 57.293 42.857 4.18 0.00 0.00 2.32
4823 5650 5.119694 GTTGCTCTGGTATTTCTCTAAGGG 58.880 45.833 0.00 0.00 0.00 3.95
4854 5684 5.887598 ACAATGCCAATCATAAGCTAACTGA 59.112 36.000 0.00 0.00 34.33 3.41
5034 5938 0.039618 TGGCAATCCTTCCAAGGTCC 59.960 55.000 5.24 4.14 46.54 4.46
5471 6382 6.093357 CCCTCTTCAGAACTATCTCAAAAAGC 59.907 42.308 0.00 0.00 32.03 3.51
5783 6694 5.245526 AGGTGTTATAGTCAGTTCGAAACCT 59.754 40.000 0.00 1.28 0.00 3.50
5849 6760 5.687166 TGTCCTCGACTATAACCCAAAAT 57.313 39.130 0.00 0.00 33.15 1.82
5924 6835 4.202346 TGAAGTGTGTGATCTTCATCCACA 60.202 41.667 3.91 0.00 43.02 4.17
6113 7024 2.819422 CATTCCTCAATGCAGTGACG 57.181 50.000 13.76 9.82 33.19 4.35
6407 7318 1.197036 GTTTCGCCTGTTAGCTCAACC 59.803 52.381 0.00 0.00 36.20 3.77
6875 7795 2.465299 CCGTGTCGGCACAAACACA 61.465 57.895 21.70 0.00 45.50 3.72
7019 7945 5.938125 ACCACATCTCAGCGTATTTTTAAGT 59.062 36.000 0.00 0.00 0.00 2.24
7088 8014 1.876156 CCAAGAAACAGCTGAGTCACC 59.124 52.381 23.35 3.07 0.00 4.02
7154 8080 3.490933 CCAAATGAGCAGGCAATGATCTG 60.491 47.826 7.76 0.00 44.89 2.90
7208 8134 0.387202 CAGTATGAGCACTCTCCCGG 59.613 60.000 0.00 0.00 39.69 5.73
7511 8437 3.233355 GTGACTTACACCCTGCAGG 57.767 57.895 26.87 26.87 43.05 4.85
7733 8659 4.807834 TCTGATGCTGAAGCTAGAATTTCG 59.192 41.667 3.61 0.00 42.66 3.46
7931 8857 0.873743 CAGAAAGGAGGATCTCGCGC 60.874 60.000 0.00 0.00 33.73 6.86
7934 8860 0.105778 GGGCAGAAAGGAGGATCTCG 59.894 60.000 0.00 0.00 33.73 4.04
8174 9100 1.825341 CAGGTCCCGCATCTCATCA 59.175 57.895 0.00 0.00 0.00 3.07
8289 9215 2.030958 CGTTGTCACCGGCCCTTAC 61.031 63.158 0.00 0.00 0.00 2.34
8351 9277 2.579738 GGCCCGACCTCAGAGTTC 59.420 66.667 0.00 0.00 34.51 3.01
8477 9403 3.553095 GAGCTTCACACGGGCCCTT 62.553 63.158 22.43 7.92 0.00 3.95
8564 9490 2.283604 TACTCCTGGTCGCAGCCA 60.284 61.111 0.00 0.00 36.97 4.75
8597 9523 0.465705 CGCCTCCAGCTTCCTTGATA 59.534 55.000 0.00 0.00 40.39 2.15
8671 9597 9.113838 GGATGATAATAAGTTTCATGTCACACT 57.886 33.333 0.00 0.00 30.48 3.55
8672 9598 9.113838 AGGATGATAATAAGTTTCATGTCACAC 57.886 33.333 0.00 0.00 30.48 3.82
8740 9683 3.435671 GTGTGCATCAGGTTACACTTACC 59.564 47.826 0.00 0.00 40.07 2.85
8741 9684 3.122948 CGTGTGCATCAGGTTACACTTAC 59.877 47.826 0.00 0.00 40.81 2.34
8742 9685 3.243941 ACGTGTGCATCAGGTTACACTTA 60.244 43.478 8.25 0.00 41.53 2.24
8743 9686 2.143122 CGTGTGCATCAGGTTACACTT 58.857 47.619 0.00 0.00 40.81 3.16
8744 9687 1.070134 ACGTGTGCATCAGGTTACACT 59.930 47.619 8.25 0.00 41.53 3.55
8745 9688 1.508632 ACGTGTGCATCAGGTTACAC 58.491 50.000 8.25 0.00 41.53 2.90
8882 9831 4.890088 ACGTGTTTATCAGGCTCAACTTA 58.110 39.130 0.00 0.00 35.61 2.24
8946 9895 4.457466 AGGTAACGGTGAGACAAAAATGT 58.543 39.130 0.00 0.00 46.39 2.71
8949 9898 3.628487 CCAAGGTAACGGTGAGACAAAAA 59.372 43.478 0.00 0.00 46.39 1.94
8986 9935 3.007398 AGAGAGATCCACCGCATTATTCC 59.993 47.826 0.00 0.00 0.00 3.01
8987 9936 4.264460 AGAGAGATCCACCGCATTATTC 57.736 45.455 0.00 0.00 0.00 1.75
8988 9937 4.696479 AAGAGAGATCCACCGCATTATT 57.304 40.909 0.00 0.00 0.00 1.40
8990 9939 3.490933 CGAAAGAGAGATCCACCGCATTA 60.491 47.826 0.00 0.00 0.00 1.90
8991 9940 2.739932 CGAAAGAGAGATCCACCGCATT 60.740 50.000 0.00 0.00 0.00 3.56
8993 9942 0.173481 CGAAAGAGAGATCCACCGCA 59.827 55.000 0.00 0.00 0.00 5.69
8994 9943 0.528684 CCGAAAGAGAGATCCACCGC 60.529 60.000 0.00 0.00 0.00 5.68
8995 9944 0.103208 CCCGAAAGAGAGATCCACCG 59.897 60.000 0.00 0.00 0.00 4.94
8996 9945 0.179070 GCCCGAAAGAGAGATCCACC 60.179 60.000 0.00 0.00 0.00 4.61
8997 9946 0.827368 AGCCCGAAAGAGAGATCCAC 59.173 55.000 0.00 0.00 0.00 4.02
8998 9947 2.311463 CTAGCCCGAAAGAGAGATCCA 58.689 52.381 0.00 0.00 0.00 3.41
8999 9948 1.616374 CCTAGCCCGAAAGAGAGATCC 59.384 57.143 0.00 0.00 0.00 3.36
9000 9949 1.616374 CCCTAGCCCGAAAGAGAGATC 59.384 57.143 0.00 0.00 0.00 2.75
9001 9950 1.218196 TCCCTAGCCCGAAAGAGAGAT 59.782 52.381 0.00 0.00 0.00 2.75
9002 9951 0.629596 TCCCTAGCCCGAAAGAGAGA 59.370 55.000 0.00 0.00 0.00 3.10
9003 9952 1.137282 GTTCCCTAGCCCGAAAGAGAG 59.863 57.143 0.00 0.00 0.00 3.20
9004 9953 1.192428 GTTCCCTAGCCCGAAAGAGA 58.808 55.000 0.00 0.00 0.00 3.10
9005 9954 0.179108 CGTTCCCTAGCCCGAAAGAG 60.179 60.000 0.00 0.00 0.00 2.85
9006 9955 1.610554 CCGTTCCCTAGCCCGAAAGA 61.611 60.000 0.00 0.00 0.00 2.52
9016 9965 0.177141 CGCCATCTTTCCGTTCCCTA 59.823 55.000 0.00 0.00 0.00 3.53
9023 9972 2.125147 TCTGCCGCCATCTTTCCG 60.125 61.111 0.00 0.00 0.00 4.30
9024 9973 1.821332 CCTCTGCCGCCATCTTTCC 60.821 63.158 0.00 0.00 0.00 3.13
9041 9991 0.806492 GATCACCCGAACTCGAAGCC 60.806 60.000 0.00 0.00 43.02 4.35
9101 10051 1.883275 ACATCATCGAGATCGTCCTCC 59.117 52.381 1.70 0.00 40.80 4.30
9113 10063 2.631267 TGATCCACAACCACATCATCG 58.369 47.619 0.00 0.00 0.00 3.84
9155 10105 1.739667 CACCGCCATCCATCGAGTA 59.260 57.895 0.00 0.00 0.00 2.59
9208 10158 2.224549 CGCATGTTTTTGTAGAACCCGA 59.775 45.455 0.00 0.00 0.00 5.14
9209 10159 2.031508 ACGCATGTTTTTGTAGAACCCG 60.032 45.455 0.00 0.00 0.00 5.28
9210 10160 3.305110 CACGCATGTTTTTGTAGAACCC 58.695 45.455 0.00 0.00 0.00 4.11
9242 10192 6.398918 GTGGATACTAACTTTCTGAGCAAGA 58.601 40.000 0.00 0.00 37.61 3.02
9257 10207 3.246203 TGTCTTTCAGGGGGTGGATACTA 60.246 47.826 0.00 0.00 37.61 1.82
9263 10213 0.539669 GGTTGTCTTTCAGGGGGTGG 60.540 60.000 0.00 0.00 0.00 4.61
9265 10215 0.478507 CAGGTTGTCTTTCAGGGGGT 59.521 55.000 0.00 0.00 0.00 4.95
9293 10243 1.508088 CCCCAGACAAGCGAATTGC 59.492 57.895 1.14 0.00 43.15 3.56
9313 10263 0.105039 CCCCATGACTCGTTCCTAGC 59.895 60.000 0.00 0.00 0.00 3.42
9316 10266 0.326618 ATCCCCCATGACTCGTTCCT 60.327 55.000 0.00 0.00 0.00 3.36
9320 10270 1.002921 TCCATCCCCCATGACTCGT 59.997 57.895 0.00 0.00 33.80 4.18
9347 10297 1.206578 CACCGCATCACCACGAAAC 59.793 57.895 0.00 0.00 0.00 2.78
9368 10318 2.202878 CCATCGTACGGTGCCAGG 60.203 66.667 23.08 5.56 0.00 4.45
9369 10319 0.672401 AAACCATCGTACGGTGCCAG 60.672 55.000 23.08 12.04 36.67 4.85
9386 10336 3.553828 ACAGAGGACGGTTTTGAGAAA 57.446 42.857 0.00 0.00 0.00 2.52
9405 10355 5.825151 AGATTTCCAGCCAATCTAGCTTAAC 59.175 40.000 0.00 0.00 38.89 2.01
9407 10357 5.371526 CAGATTTCCAGCCAATCTAGCTTA 58.628 41.667 0.00 0.00 38.67 3.09
9417 10367 0.035534 TAAGCGCAGATTTCCAGCCA 60.036 50.000 11.47 0.00 37.33 4.75
9428 10378 4.260538 GGAAAGTCATGAATCTAAGCGCAG 60.261 45.833 11.47 0.00 0.00 5.18
9431 10381 5.111989 TCTGGAAAGTCATGAATCTAAGCG 58.888 41.667 0.00 0.00 0.00 4.68
9435 10385 5.032846 ACCCTCTGGAAAGTCATGAATCTA 58.967 41.667 0.00 0.00 34.81 1.98
9458 10408 7.710907 GCAAGCGATGGGATCTATAATACATAA 59.289 37.037 0.00 0.00 0.00 1.90
9466 10416 2.354103 GCAGCAAGCGATGGGATCTATA 60.354 50.000 0.00 0.00 0.00 1.31
9467 10417 1.610102 GCAGCAAGCGATGGGATCTAT 60.610 52.381 0.00 0.00 0.00 1.98
9468 10418 0.250038 GCAGCAAGCGATGGGATCTA 60.250 55.000 0.00 0.00 0.00 1.98
9503 10453 1.070134 GAGGCTGGTTCGGCATATACA 59.930 52.381 0.00 0.00 37.51 2.29
9548 10498 5.580691 CACATTAATCTTAACCTGCACTCGA 59.419 40.000 0.00 0.00 0.00 4.04
9551 10501 4.949856 CCCACATTAATCTTAACCTGCACT 59.050 41.667 0.00 0.00 0.00 4.40
9587 10537 3.144506 CACCTTCAGAGACACTGCATTT 58.855 45.455 0.00 0.00 45.38 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.