Multiple sequence alignment - TraesCS6A01G024700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G024700 chr6A 100.000 3227 0 0 1 3227 12291920 12288694 0.000000e+00 5960.0
1 TraesCS6A01G024700 chr6A 100.000 298 0 0 3521 3818 12288400 12288103 5.570000e-153 551.0
2 TraesCS6A01G024700 chr6A 98.684 76 1 0 3152 3227 471195360 471195285 6.650000e-28 135.0
3 TraesCS6A01G024700 chr6A 98.684 76 1 0 3152 3227 579381743 579381818 6.650000e-28 135.0
4 TraesCS6A01G024700 chr6A 92.105 76 4 2 3521 3595 39549232 39549158 5.220000e-19 106.0
5 TraesCS6A01G024700 chr6A 92.105 76 4 2 3521 3595 39591373 39591299 5.220000e-19 106.0
6 TraesCS6A01G024700 chr6A 95.312 64 3 0 3521 3584 39639168 39639105 6.750000e-18 102.0
7 TraesCS6A01G024700 chr6D 88.168 1741 131 34 2 1687 10704555 10702835 0.000000e+00 2004.0
8 TraesCS6A01G024700 chr6D 95.382 1061 40 6 2091 3147 10702717 10701662 0.000000e+00 1679.0
9 TraesCS6A01G024700 chr6D 86.998 423 52 3 2 423 10719069 10718649 1.240000e-129 473.0
10 TraesCS6A01G024700 chr6B 91.015 946 49 23 2071 3001 20015472 20014548 0.000000e+00 1243.0
11 TraesCS6A01G024700 chr6B 81.651 1357 116 71 747 2031 20016772 20015477 0.000000e+00 1003.0
12 TraesCS6A01G024700 chr6B 88.393 112 13 0 3707 3818 20014485 20014374 6.650000e-28 135.0
13 TraesCS6A01G024700 chr6B 91.228 57 1 1 3644 3696 20013967 20013911 1.470000e-09 75.0
14 TraesCS6A01G024700 chr7D 82.336 351 61 1 2425 2775 42381971 42381622 1.720000e-78 303.0
15 TraesCS6A01G024700 chr7D 83.750 240 32 3 2128 2367 42382228 42381996 1.790000e-53 220.0
16 TraesCS6A01G024700 chr7D 98.684 76 1 0 3152 3227 631289066 631289141 6.650000e-28 135.0
17 TraesCS6A01G024700 chr3A 100.000 76 0 0 3152 3227 184272611 184272536 1.430000e-29 141.0
18 TraesCS6A01G024700 chr3A 98.684 76 1 0 3152 3227 16248312 16248387 6.650000e-28 135.0
19 TraesCS6A01G024700 chr3A 98.684 76 1 0 3152 3227 76343644 76343719 6.650000e-28 135.0
20 TraesCS6A01G024700 chr5A 98.684 76 1 0 3152 3227 414976518 414976443 6.650000e-28 135.0
21 TraesCS6A01G024700 chr5A 98.438 64 1 0 3521 3584 571578934 571578871 3.120000e-21 113.0
22 TraesCS6A01G024700 chr5A 96.875 64 2 0 3521 3584 372669800 372669737 1.450000e-19 108.0
23 TraesCS6A01G024700 chr5A 93.548 62 4 0 3521 3582 494223597 494223658 4.060000e-15 93.5
24 TraesCS6A01G024700 chr5A 87.037 54 6 1 393 445 426733624 426733677 4.120000e-05 60.2
25 TraesCS6A01G024700 chr4B 98.684 76 1 0 3152 3227 429347402 429347477 6.650000e-28 135.0
26 TraesCS6A01G024700 chr1A 98.684 76 1 0 3152 3227 569273979 569274054 6.650000e-28 135.0
27 TraesCS6A01G024700 chr2A 96.923 65 2 0 3521 3585 105594618 105594554 4.030000e-20 110.0
28 TraesCS6A01G024700 chr2A 92.958 71 4 1 3521 3590 734092257 734092327 6.750000e-18 102.0
29 TraesCS6A01G024700 chr7A 95.082 61 3 0 3524 3584 172915884 172915824 3.140000e-16 97.1
30 TraesCS6A01G024700 chr2B 81.905 105 19 0 466 570 16964699 16964803 5.250000e-14 89.8
31 TraesCS6A01G024700 chr2D 80.000 80 15 1 489 568 35669902 35669824 1.480000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G024700 chr6A 12288103 12291920 3817 True 3255.5 5960 100.00000 1 3818 2 chr6A.!!$R5 3817
1 TraesCS6A01G024700 chr6D 10701662 10704555 2893 True 1841.5 2004 91.77500 2 3147 2 chr6D.!!$R2 3145
2 TraesCS6A01G024700 chr6B 20013911 20016772 2861 True 614.0 1243 88.07175 747 3818 4 chr6B.!!$R1 3071
3 TraesCS6A01G024700 chr7D 42381622 42382228 606 True 261.5 303 83.04300 2128 2775 2 chr7D.!!$R1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 234 0.036388 TTTAGTCCCCGCAAGAGCTG 60.036 55.0 0.00 0.0 43.02 4.24 F
506 510 0.106419 TGTTTGGTGGTTCAGGGACC 60.106 55.0 0.00 0.0 40.23 4.46 F
1906 2018 0.465460 AGAAAAACAGCGCCACCTCA 60.465 50.0 2.29 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 1997 0.465460 AGGTGGCGCTGTTTTTCTCA 60.465 50.0 7.64 0.0 0.00 3.27 R
1973 2087 0.521242 GCGCGCAGATGTTGTTTAGG 60.521 55.0 29.10 0.0 0.00 2.69 R
3661 3796 0.033208 GCATTGGGGATCTTGGTCCA 60.033 55.0 2.08 0.0 40.17 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.015350 GGATGAGGACGATTGTTATCTTAGGA 60.015 42.308 0.00 0.00 0.00 2.94
36 37 9.110502 GAGGACGATTGTTATCTTAGGAAAAAT 57.889 33.333 0.00 0.00 0.00 1.82
82 83 1.895020 TTCCCTCGTATGTTGCGGCT 61.895 55.000 0.00 0.00 0.00 5.52
84 85 0.179094 CCCTCGTATGTTGCGGCTAA 60.179 55.000 0.00 0.00 0.00 3.09
104 105 6.109359 GCTAATGCAAACTCTTCCTCTCTAA 58.891 40.000 0.00 0.00 39.41 2.10
154 157 0.803768 CATTCCGCGTGTCTCTCCAG 60.804 60.000 4.92 0.00 0.00 3.86
178 181 1.644786 CGGGAGGGAAATTCGTGTGC 61.645 60.000 0.00 0.00 0.00 4.57
188 191 2.410322 ATTCGTGTGCCTTGGCTCCA 62.410 55.000 13.18 6.82 0.00 3.86
203 206 1.269778 GCTCCAACCAAGAGTTTTGGC 60.270 52.381 12.26 0.00 43.23 4.52
230 233 0.690762 TTTTAGTCCCCGCAAGAGCT 59.309 50.000 0.00 0.00 43.02 4.09
231 234 0.036388 TTTAGTCCCCGCAAGAGCTG 60.036 55.000 0.00 0.00 43.02 4.24
234 237 4.704833 TCCCCGCAAGAGCTGTGC 62.705 66.667 8.63 8.63 43.02 4.57
236 239 2.670934 CCCGCAAGAGCTGTGCTT 60.671 61.111 15.14 0.00 39.88 3.91
245 248 2.282040 GCTGTGCTTGAGTGGCCT 60.282 61.111 3.32 0.00 0.00 5.19
249 252 2.113774 TGCTTGAGTGGCCTGTGG 59.886 61.111 3.32 0.00 0.00 4.17
269 272 2.095053 GGCGCTTCTTCTTCAAGCTTAG 59.905 50.000 7.64 0.00 43.57 2.18
292 295 4.002982 TCTTTCAAGACCCGATTGTGATG 58.997 43.478 0.00 0.00 0.00 3.07
297 301 3.703001 AGACCCGATTGTGATGAGTTT 57.297 42.857 0.00 0.00 0.00 2.66
298 302 4.021102 AGACCCGATTGTGATGAGTTTT 57.979 40.909 0.00 0.00 0.00 2.43
304 308 4.394795 CGATTGTGATGAGTTTTTCCGTC 58.605 43.478 0.00 0.00 0.00 4.79
315 319 3.626217 AGTTTTTCCGTCTGGACAAAGTC 59.374 43.478 1.63 0.00 46.45 3.01
316 320 2.992124 TTTCCGTCTGGACAAAGTCA 57.008 45.000 1.63 0.00 46.45 3.41
318 322 0.679505 TCCGTCTGGACAAAGTCAGG 59.320 55.000 1.63 0.00 40.17 3.86
333 337 0.115152 TCAGGGGAGCTCTGACTTCA 59.885 55.000 14.64 0.00 36.46 3.02
340 344 3.688673 GGGAGCTCTGACTTCAATTTCTG 59.311 47.826 14.64 0.00 0.00 3.02
351 355 7.461749 TGACTTCAATTTCTGTTAGGGATCTT 58.538 34.615 0.00 0.00 0.00 2.40
356 360 5.904362 ATTTCTGTTAGGGATCTTGTTGC 57.096 39.130 0.00 0.00 0.00 4.17
358 362 1.398390 CTGTTAGGGATCTTGTTGCGC 59.602 52.381 0.00 0.00 0.00 6.09
371 375 0.939106 GTTGCGCGGTGCTTTCAAAT 60.939 50.000 15.31 0.00 46.63 2.32
372 376 0.662970 TTGCGCGGTGCTTTCAAATC 60.663 50.000 15.31 0.00 46.63 2.17
377 381 2.177173 GCGGTGCTTTCAAATCGATTC 58.823 47.619 11.83 0.00 0.00 2.52
384 388 6.145535 GTGCTTTCAAATCGATTCAAGAGTT 58.854 36.000 20.70 0.74 0.00 3.01
385 389 6.304208 GTGCTTTCAAATCGATTCAAGAGTTC 59.696 38.462 20.70 9.32 0.00 3.01
388 392 7.540055 GCTTTCAAATCGATTCAAGAGTTCAAT 59.460 33.333 20.70 0.00 0.00 2.57
389 393 8.732413 TTTCAAATCGATTCAAGAGTTCAATG 57.268 30.769 11.83 1.47 0.00 2.82
390 394 7.671495 TCAAATCGATTCAAGAGTTCAATGA 57.329 32.000 11.83 3.97 0.00 2.57
398 402 2.349297 AGAGTTCAATGACGACGACC 57.651 50.000 0.00 0.00 0.00 4.79
416 420 1.503542 CGTGGCTCAAGATGTTGGC 59.496 57.895 2.33 5.27 34.09 4.52
422 426 2.019984 GCTCAAGATGTTGGCCCTTAG 58.980 52.381 0.00 0.00 34.09 2.18
444 448 1.134226 GCACATGCACAAAGACTTGC 58.866 50.000 0.00 0.00 41.59 4.01
445 449 1.774639 CACATGCACAAAGACTTGCC 58.225 50.000 0.00 0.00 38.00 4.52
448 452 2.129607 CATGCACAAAGACTTGCCAAC 58.870 47.619 0.00 0.00 38.00 3.77
459 463 7.230510 ACAAAGACTTGCCAACTATTATCAACA 59.769 33.333 0.00 0.00 35.84 3.33
482 486 4.412796 CAGATCATTCTGGCAGGAGTAA 57.587 45.455 15.73 1.24 44.78 2.24
487 491 5.378230 TCATTCTGGCAGGAGTAATGATT 57.622 39.130 19.59 0.00 32.99 2.57
494 498 3.763897 GGCAGGAGTAATGATTGTTTGGT 59.236 43.478 0.00 0.00 0.00 3.67
505 509 1.770294 TTGTTTGGTGGTTCAGGGAC 58.230 50.000 0.00 0.00 0.00 4.46
506 510 0.106419 TGTTTGGTGGTTCAGGGACC 60.106 55.000 0.00 0.00 40.23 4.46
511 515 1.265454 GGTGGTTCAGGGACCTCGAT 61.265 60.000 0.00 0.00 40.47 3.59
520 524 4.766375 TCAGGGACCTCGATGTAATTTTC 58.234 43.478 0.00 0.00 0.00 2.29
551 555 8.332464 TGTTTAAGATGTTTTGTACTTCTGACG 58.668 33.333 0.00 0.00 40.17 4.35
624 628 9.511144 AAAGAAAAACGTTTGATACCTAGTTTG 57.489 29.630 15.46 0.00 32.94 2.93
643 647 7.775397 AGTTTGAATTTGAACCAACTGATTG 57.225 32.000 2.39 0.00 35.40 2.67
733 737 5.066505 CCATTAAACTCCTGCTGGACAATAC 59.933 44.000 8.48 0.00 37.46 1.89
751 755 5.047164 ACAATACATTCCTGCATGCTTTTCA 60.047 36.000 20.33 0.00 0.00 2.69
777 783 8.015658 ACTTTTGAAAAATGATACGAGTAGCAC 58.984 33.333 3.17 0.00 34.01 4.40
784 790 2.353889 TGATACGAGTAGCACGTTCCTC 59.646 50.000 0.00 0.00 43.62 3.71
881 896 1.812571 CACATTTTTGTCCTCCTCCGG 59.187 52.381 0.00 0.00 0.00 5.14
925 958 2.317378 CCCTTCCCTTCCCCTTCCC 61.317 68.421 0.00 0.00 0.00 3.97
932 965 1.147153 CTTCCCCTTCCCTCGCATC 59.853 63.158 0.00 0.00 0.00 3.91
967 1000 3.857309 AAAGCAAGCAGGCCGAGCT 62.857 57.895 18.51 18.51 45.97 4.09
1056 1112 3.767806 CTCCTGCTGCTCGCCTCA 61.768 66.667 0.00 0.00 38.05 3.86
1203 1271 4.035102 GAGCTGCCCCTTCCGGTT 62.035 66.667 0.00 0.00 0.00 4.44
1204 1272 3.978571 GAGCTGCCCCTTCCGGTTC 62.979 68.421 0.00 0.00 0.00 3.62
1206 1274 4.778143 CTGCCCCTTCCGGTTCCG 62.778 72.222 0.00 4.08 0.00 4.30
1350 1418 2.491022 CCTGTCGAGGATCCCCGTC 61.491 68.421 15.89 10.78 42.93 4.79
1512 1580 1.548986 CCGACGACCACGGTAAATAC 58.451 55.000 0.00 0.00 44.57 1.89
1531 1599 2.196229 CCCTCCTCCGACGATCCT 59.804 66.667 0.00 0.00 0.00 3.24
1534 1602 2.044352 TCCTCCGACGATCCTGCA 60.044 61.111 0.00 0.00 0.00 4.41
1536 1604 2.418910 CCTCCGACGATCCTGCACT 61.419 63.158 0.00 0.00 0.00 4.40
1541 1609 2.046892 ACGATCCTGCACTGCACC 60.047 61.111 0.00 0.00 33.79 5.01
1542 1610 3.190849 CGATCCTGCACTGCACCG 61.191 66.667 0.00 0.00 33.79 4.94
1543 1611 2.265739 GATCCTGCACTGCACCGA 59.734 61.111 0.00 0.00 33.79 4.69
1545 1613 3.939837 ATCCTGCACTGCACCGACG 62.940 63.158 0.00 0.00 33.79 5.12
1627 1713 1.098712 TGTGGCCGAGGAAACAACAC 61.099 55.000 0.00 0.00 0.00 3.32
1641 1727 1.143073 ACAACACAGGGAACTTCCTCC 59.857 52.381 7.77 0.00 40.21 4.30
1646 1732 1.132365 ACAGGGAACTTCCTCCTCCTT 60.132 52.381 7.77 0.00 40.21 3.36
1652 1738 4.013050 GGAACTTCCTCCTCCTTCAAATG 58.987 47.826 0.00 0.00 32.53 2.32
1745 1837 7.079451 TCCTCTTCCTGTAAAGAACTCAAAT 57.921 36.000 0.00 0.00 34.95 2.32
1748 1840 8.293157 CCTCTTCCTGTAAAGAACTCAAATTTC 58.707 37.037 0.00 0.00 34.95 2.17
1749 1841 8.980481 TCTTCCTGTAAAGAACTCAAATTTCT 57.020 30.769 0.00 0.00 34.66 2.52
1750 1842 9.057089 TCTTCCTGTAAAGAACTCAAATTTCTC 57.943 33.333 0.00 0.00 31.87 2.87
1751 1843 8.980481 TTCCTGTAAAGAACTCAAATTTCTCT 57.020 30.769 0.00 0.00 31.87 3.10
1817 1911 6.367695 TCATTGTCAGGTGTGTAGAAAATACG 59.632 38.462 0.00 0.00 0.00 3.06
1822 1916 4.565564 CAGGTGTGTAGAAAATACGTAGGC 59.434 45.833 0.08 0.00 0.00 3.93
1825 1919 4.565564 GTGTGTAGAAAATACGTAGGCTGG 59.434 45.833 0.08 0.00 0.00 4.85
1837 1931 3.440173 ACGTAGGCTGGATTGAAAATGTG 59.560 43.478 0.00 0.00 0.00 3.21
1849 1943 8.087750 TGGATTGAAAATGTGGAGTAAATTGAC 58.912 33.333 0.00 0.00 0.00 3.18
1852 1946 8.870160 TTGAAAATGTGGAGTAAATTGACTTG 57.130 30.769 0.00 0.00 0.00 3.16
1854 1948 7.920151 TGAAAATGTGGAGTAAATTGACTTGTG 59.080 33.333 0.00 0.00 0.00 3.33
1857 1951 6.371809 TGTGGAGTAAATTGACTTGTGTTC 57.628 37.500 0.00 0.00 0.00 3.18
1859 1953 6.183360 TGTGGAGTAAATTGACTTGTGTTCAC 60.183 38.462 0.00 1.46 0.00 3.18
1860 1954 5.007234 TGGAGTAAATTGACTTGTGTTCACG 59.993 40.000 0.00 0.00 0.00 4.35
1861 1955 5.235616 GGAGTAAATTGACTTGTGTTCACGA 59.764 40.000 0.00 0.00 0.00 4.35
1862 1956 6.287107 AGTAAATTGACTTGTGTTCACGAG 57.713 37.500 16.01 16.01 0.00 4.18
1863 1957 5.815740 AGTAAATTGACTTGTGTTCACGAGT 59.184 36.000 21.33 21.33 37.08 4.18
1864 1958 4.536364 AATTGACTTGTGTTCACGAGTG 57.464 40.909 24.81 4.66 34.68 3.51
1865 1959 2.951457 TGACTTGTGTTCACGAGTGA 57.049 45.000 24.81 16.77 34.68 3.41
1866 1960 3.452755 TGACTTGTGTTCACGAGTGAT 57.547 42.857 24.81 6.14 39.64 3.06
1867 1961 3.123050 TGACTTGTGTTCACGAGTGATG 58.877 45.455 24.81 3.42 39.64 3.07
1868 1962 3.123804 GACTTGTGTTCACGAGTGATGT 58.876 45.455 24.81 6.23 39.64 3.06
1871 1983 3.021269 TGTGTTCACGAGTGATGTACC 57.979 47.619 6.77 0.00 39.64 3.34
1885 1997 4.101119 GTGATGTACCACTGCCTACCTAAT 59.899 45.833 0.00 0.00 34.38 1.73
1894 2006 5.123979 CCACTGCCTACCTAATGAGAAAAAC 59.876 44.000 0.00 0.00 0.00 2.43
1896 2008 5.940470 ACTGCCTACCTAATGAGAAAAACAG 59.060 40.000 0.00 0.00 0.00 3.16
1898 2010 4.201822 GCCTACCTAATGAGAAAAACAGCG 60.202 45.833 0.00 0.00 0.00 5.18
1906 2018 0.465460 AGAAAAACAGCGCCACCTCA 60.465 50.000 2.29 0.00 0.00 3.86
1908 2020 0.751643 AAAAACAGCGCCACCTCACT 60.752 50.000 2.29 0.00 0.00 3.41
1909 2021 1.447317 AAAACAGCGCCACCTCACTG 61.447 55.000 2.29 0.00 36.22 3.66
1910 2022 2.324014 AAACAGCGCCACCTCACTGA 62.324 55.000 2.29 0.00 34.25 3.41
1912 2024 1.376424 CAGCGCCACCTCACTGAAT 60.376 57.895 2.29 0.00 31.67 2.57
1913 2025 0.957395 CAGCGCCACCTCACTGAATT 60.957 55.000 2.29 0.00 31.67 2.17
1917 2029 2.922335 GCGCCACCTCACTGAATTTTTC 60.922 50.000 0.00 0.00 0.00 2.29
1918 2030 2.554032 CGCCACCTCACTGAATTTTTCT 59.446 45.455 0.00 0.00 0.00 2.52
1919 2031 3.751175 CGCCACCTCACTGAATTTTTCTA 59.249 43.478 0.00 0.00 0.00 2.10
1959 2073 4.092383 GCGTGATAGGTTAACGACAATGTT 59.908 41.667 0.00 0.00 39.64 2.71
1961 2075 6.507456 GCGTGATAGGTTAACGACAATGTTAG 60.507 42.308 0.00 0.00 39.64 2.34
1962 2076 6.529125 CGTGATAGGTTAACGACAATGTTAGT 59.471 38.462 0.00 0.00 39.64 2.24
1964 2078 8.715088 GTGATAGGTTAACGACAATGTTAGTTT 58.285 33.333 11.96 0.21 35.85 2.66
1967 2081 6.652245 AGGTTAACGACAATGTTAGTTTTCG 58.348 36.000 11.96 0.95 35.85 3.46
1968 2082 6.258507 AGGTTAACGACAATGTTAGTTTTCGT 59.741 34.615 11.96 1.53 41.22 3.85
1969 2083 6.571154 GGTTAACGACAATGTTAGTTTTCGTC 59.429 38.462 11.96 0.00 38.68 4.20
1971 2085 5.324739 ACGACAATGTTAGTTTTCGTCAG 57.675 39.130 0.00 0.00 34.80 3.51
1972 2086 4.807304 ACGACAATGTTAGTTTTCGTCAGT 59.193 37.500 0.00 0.00 34.80 3.41
1973 2087 5.051240 ACGACAATGTTAGTTTTCGTCAGTC 60.051 40.000 0.00 0.00 34.80 3.51
1974 2088 5.611844 CGACAATGTTAGTTTTCGTCAGTCC 60.612 44.000 0.00 0.00 0.00 3.85
1975 2089 5.365619 ACAATGTTAGTTTTCGTCAGTCCT 58.634 37.500 0.00 0.00 0.00 3.85
1976 2090 6.518493 ACAATGTTAGTTTTCGTCAGTCCTA 58.482 36.000 0.00 0.00 0.00 2.94
1977 2091 6.987992 ACAATGTTAGTTTTCGTCAGTCCTAA 59.012 34.615 0.00 0.00 0.00 2.69
1979 2093 6.833342 TGTTAGTTTTCGTCAGTCCTAAAC 57.167 37.500 0.00 0.00 0.00 2.01
1981 2095 6.817641 TGTTAGTTTTCGTCAGTCCTAAACAA 59.182 34.615 0.00 0.00 32.58 2.83
1982 2096 5.729974 AGTTTTCGTCAGTCCTAAACAAC 57.270 39.130 0.00 0.00 32.58 3.32
1990 2104 2.076863 AGTCCTAAACAACATCTGCGC 58.923 47.619 0.00 0.00 0.00 6.09
1991 2105 1.075542 TCCTAAACAACATCTGCGCG 58.924 50.000 0.00 0.00 0.00 6.86
1992 2106 0.521242 CCTAAACAACATCTGCGCGC 60.521 55.000 27.26 27.26 0.00 6.86
2004 2118 3.013439 GCGCGCGCTTGCTTAATC 61.013 61.111 44.38 14.45 38.26 1.75
2012 2126 0.179163 GCTTGCTTAATCACCACGCC 60.179 55.000 0.00 0.00 0.00 5.68
2015 2129 1.077716 GCTTAATCACCACGCCCCT 60.078 57.895 0.00 0.00 0.00 4.79
2023 2137 2.266055 CCACGCCCCTCTCTGTTC 59.734 66.667 0.00 0.00 0.00 3.18
2025 2139 1.216710 CACGCCCCTCTCTGTTCTC 59.783 63.158 0.00 0.00 0.00 2.87
2031 2145 2.545810 CCCCTCTCTGTTCTCCTCTTT 58.454 52.381 0.00 0.00 0.00 2.52
2033 2147 3.055458 CCCCTCTCTGTTCTCCTCTTTTC 60.055 52.174 0.00 0.00 0.00 2.29
2035 2149 4.562552 CCCTCTCTGTTCTCCTCTTTTCAC 60.563 50.000 0.00 0.00 0.00 3.18
2036 2150 4.562552 CCTCTCTGTTCTCCTCTTTTCACC 60.563 50.000 0.00 0.00 0.00 4.02
2037 2151 3.005897 TCTCTGTTCTCCTCTTTTCACCG 59.994 47.826 0.00 0.00 0.00 4.94
2038 2152 1.801178 CTGTTCTCCTCTTTTCACCGC 59.199 52.381 0.00 0.00 0.00 5.68
2039 2153 1.140052 TGTTCTCCTCTTTTCACCGCA 59.860 47.619 0.00 0.00 0.00 5.69
2040 2154 2.218603 GTTCTCCTCTTTTCACCGCAA 58.781 47.619 0.00 0.00 0.00 4.85
2041 2155 1.878953 TCTCCTCTTTTCACCGCAAC 58.121 50.000 0.00 0.00 0.00 4.17
2042 2156 1.140052 TCTCCTCTTTTCACCGCAACA 59.860 47.619 0.00 0.00 0.00 3.33
2043 2157 1.946768 CTCCTCTTTTCACCGCAACAA 59.053 47.619 0.00 0.00 0.00 2.83
2044 2158 2.357637 CTCCTCTTTTCACCGCAACAAA 59.642 45.455 0.00 0.00 0.00 2.83
2045 2159 2.955660 TCCTCTTTTCACCGCAACAAAT 59.044 40.909 0.00 0.00 0.00 2.32
2046 2160 3.383185 TCCTCTTTTCACCGCAACAAATT 59.617 39.130 0.00 0.00 0.00 1.82
2047 2161 4.580995 TCCTCTTTTCACCGCAACAAATTA 59.419 37.500 0.00 0.00 0.00 1.40
2048 2162 5.242838 TCCTCTTTTCACCGCAACAAATTAT 59.757 36.000 0.00 0.00 0.00 1.28
2049 2163 5.345741 CCTCTTTTCACCGCAACAAATTATG 59.654 40.000 0.00 0.00 0.00 1.90
2050 2164 5.837437 TCTTTTCACCGCAACAAATTATGT 58.163 33.333 0.00 0.00 46.82 2.29
2051 2165 6.971602 TCTTTTCACCGCAACAAATTATGTA 58.028 32.000 0.00 0.00 42.99 2.29
2052 2166 7.426410 TCTTTTCACCGCAACAAATTATGTAA 58.574 30.769 0.00 0.00 42.99 2.41
2053 2167 7.921214 TCTTTTCACCGCAACAAATTATGTAAA 59.079 29.630 0.00 0.00 42.99 2.01
2054 2168 8.594881 TTTTCACCGCAACAAATTATGTAAAT 57.405 26.923 0.00 0.00 42.99 1.40
2055 2169 9.692749 TTTTCACCGCAACAAATTATGTAAATA 57.307 25.926 0.00 0.00 42.99 1.40
2056 2170 9.862371 TTTCACCGCAACAAATTATGTAAATAT 57.138 25.926 0.00 0.00 42.99 1.28
2057 2171 8.848948 TCACCGCAACAAATTATGTAAATATG 57.151 30.769 0.00 0.00 42.99 1.78
2058 2172 7.918033 TCACCGCAACAAATTATGTAAATATGG 59.082 33.333 0.00 0.00 42.99 2.74
2059 2173 7.704472 CACCGCAACAAATTATGTAAATATGGT 59.296 33.333 0.00 0.00 42.99 3.55
2060 2174 8.904834 ACCGCAACAAATTATGTAAATATGGTA 58.095 29.630 0.00 0.00 42.99 3.25
2061 2175 9.737427 CCGCAACAAATTATGTAAATATGGTAA 57.263 29.630 0.00 0.00 42.99 2.85
2103 2217 5.988561 TGGTTAAATGGCTGAATTTGTTGTC 59.011 36.000 3.73 0.00 32.16 3.18
2104 2218 5.408299 GGTTAAATGGCTGAATTTGTTGTCC 59.592 40.000 3.73 0.00 32.16 4.02
2107 2221 4.525912 ATGGCTGAATTTGTTGTCCTTC 57.474 40.909 0.00 0.00 0.00 3.46
2109 2223 3.569701 TGGCTGAATTTGTTGTCCTTCTC 59.430 43.478 0.00 0.00 0.00 2.87
2829 2952 1.226916 CAGCTAGCTGACTGGAGCG 60.227 63.158 36.47 8.72 46.30 5.03
2889 3012 4.412060 TCTTCTTCTCCTCCTTCTCCTT 57.588 45.455 0.00 0.00 0.00 3.36
2890 3013 4.349365 TCTTCTTCTCCTCCTTCTCCTTC 58.651 47.826 0.00 0.00 0.00 3.46
2891 3014 4.045334 TCTTCTTCTCCTCCTTCTCCTTCT 59.955 45.833 0.00 0.00 0.00 2.85
2905 3028 2.352651 CTCCTTCTTGTGTGTGTGTGTG 59.647 50.000 0.00 0.00 0.00 3.82
2926 3049 7.870954 TGTGTGTTAGACATTTAGTGGTAGAAG 59.129 37.037 0.00 0.00 36.78 2.85
3062 3197 7.426606 AGTTTAAACTTTTACCCAACATGGT 57.573 32.000 15.22 0.00 38.02 3.55
3085 3220 8.577296 TGGTACTACTATTATCAAGATGTCAGC 58.423 37.037 0.00 0.00 0.00 4.26
3086 3221 8.798402 GGTACTACTATTATCAAGATGTCAGCT 58.202 37.037 0.00 0.00 0.00 4.24
3092 3227 9.926158 ACTATTATCAAGATGTCAGCTAATGAG 57.074 33.333 0.00 0.00 39.07 2.90
3095 3230 9.842775 ATTATCAAGATGTCAGCTAATGAGAAA 57.157 29.630 4.48 0.48 39.07 2.52
3096 3231 9.842775 TTATCAAGATGTCAGCTAATGAGAAAT 57.157 29.630 0.00 0.00 39.07 2.17
3097 3232 8.749026 ATCAAGATGTCAGCTAATGAGAAATT 57.251 30.769 0.00 0.00 39.07 1.82
3098 3233 8.206325 TCAAGATGTCAGCTAATGAGAAATTC 57.794 34.615 0.00 0.00 39.07 2.17
3099 3234 8.045507 TCAAGATGTCAGCTAATGAGAAATTCT 58.954 33.333 0.00 0.00 39.07 2.40
3100 3235 8.675504 CAAGATGTCAGCTAATGAGAAATTCTT 58.324 33.333 0.00 0.00 39.07 2.52
3101 3236 8.211116 AGATGTCAGCTAATGAGAAATTCTTG 57.789 34.615 0.00 0.00 39.07 3.02
3102 3237 7.828223 AGATGTCAGCTAATGAGAAATTCTTGT 59.172 33.333 0.00 0.00 39.07 3.16
3103 3238 7.750229 TGTCAGCTAATGAGAAATTCTTGTT 57.250 32.000 0.00 0.00 39.07 2.83
3104 3239 7.810658 TGTCAGCTAATGAGAAATTCTTGTTC 58.189 34.615 0.00 0.00 39.07 3.18
3105 3240 7.094634 TGTCAGCTAATGAGAAATTCTTGTTCC 60.095 37.037 0.00 0.00 39.07 3.62
3106 3241 6.942005 TCAGCTAATGAGAAATTCTTGTTCCA 59.058 34.615 0.00 0.00 32.77 3.53
3107 3242 7.448161 TCAGCTAATGAGAAATTCTTGTTCCAA 59.552 33.333 0.00 0.00 32.77 3.53
3108 3243 8.084073 CAGCTAATGAGAAATTCTTGTTCCAAA 58.916 33.333 0.00 0.00 0.00 3.28
3109 3244 8.641541 AGCTAATGAGAAATTCTTGTTCCAAAA 58.358 29.630 0.00 0.00 0.00 2.44
3110 3245 9.260002 GCTAATGAGAAATTCTTGTTCCAAAAA 57.740 29.630 0.00 0.00 0.00 1.94
3113 3248 9.835389 AATGAGAAATTCTTGTTCCAAAAATGA 57.165 25.926 0.00 0.00 0.00 2.57
3117 3252 9.933723 AGAAATTCTTGTTCCAAAAATGATAGG 57.066 29.630 0.00 0.00 0.00 2.57
3118 3253 9.710900 GAAATTCTTGTTCCAAAAATGATAGGT 57.289 29.630 0.00 0.00 0.00 3.08
3119 3254 9.492973 AAATTCTTGTTCCAAAAATGATAGGTG 57.507 29.630 0.00 0.00 0.00 4.00
3120 3255 6.024552 TCTTGTTCCAAAAATGATAGGTGC 57.975 37.500 0.00 0.00 0.00 5.01
3121 3256 5.774690 TCTTGTTCCAAAAATGATAGGTGCT 59.225 36.000 0.00 0.00 0.00 4.40
3122 3257 5.643379 TGTTCCAAAAATGATAGGTGCTC 57.357 39.130 0.00 0.00 0.00 4.26
3123 3258 5.076182 TGTTCCAAAAATGATAGGTGCTCA 58.924 37.500 0.00 0.00 0.00 4.26
3124 3259 5.538053 TGTTCCAAAAATGATAGGTGCTCAA 59.462 36.000 0.00 0.00 0.00 3.02
3125 3260 6.211184 TGTTCCAAAAATGATAGGTGCTCAAT 59.789 34.615 0.00 0.00 0.00 2.57
3126 3261 6.211587 TCCAAAAATGATAGGTGCTCAATG 57.788 37.500 0.00 0.00 0.00 2.82
3127 3262 5.951148 TCCAAAAATGATAGGTGCTCAATGA 59.049 36.000 0.00 0.00 0.00 2.57
3128 3263 6.608405 TCCAAAAATGATAGGTGCTCAATGAT 59.392 34.615 0.00 0.00 0.00 2.45
3129 3264 6.921857 CCAAAAATGATAGGTGCTCAATGATC 59.078 38.462 0.00 0.00 0.00 2.92
3130 3265 7.417003 CCAAAAATGATAGGTGCTCAATGATCA 60.417 37.037 0.00 0.00 0.00 2.92
3131 3266 7.834881 AAAATGATAGGTGCTCAATGATCAT 57.165 32.000 1.18 1.18 35.96 2.45
3132 3267 7.450124 AAATGATAGGTGCTCAATGATCATC 57.550 36.000 9.06 0.00 33.90 2.92
3133 3268 4.903054 TGATAGGTGCTCAATGATCATCC 58.097 43.478 9.06 4.68 0.00 3.51
3134 3269 4.348754 TGATAGGTGCTCAATGATCATCCA 59.651 41.667 9.06 1.69 0.00 3.41
3135 3270 3.657398 AGGTGCTCAATGATCATCCAA 57.343 42.857 9.06 0.00 0.00 3.53
3136 3271 4.180377 AGGTGCTCAATGATCATCCAAT 57.820 40.909 9.06 0.00 0.00 3.16
3137 3272 4.142790 AGGTGCTCAATGATCATCCAATC 58.857 43.478 9.06 0.00 0.00 2.67
3138 3273 3.887110 GGTGCTCAATGATCATCCAATCA 59.113 43.478 9.06 1.44 39.85 2.57
3139 3274 4.523173 GGTGCTCAATGATCATCCAATCAT 59.477 41.667 9.06 0.00 46.00 2.45
3140 3275 5.461526 GTGCTCAATGATCATCCAATCATG 58.538 41.667 9.06 1.70 43.85 3.07
3141 3276 4.522789 TGCTCAATGATCATCCAATCATGG 59.477 41.667 9.06 0.00 43.85 3.66
3150 3285 3.752796 CCAATCATGGCTGCAAAGG 57.247 52.632 0.50 0.00 40.58 3.11
3151 3286 0.899720 CCAATCATGGCTGCAAAGGT 59.100 50.000 0.50 0.00 40.58 3.50
3152 3287 1.404986 CCAATCATGGCTGCAAAGGTG 60.405 52.381 0.50 0.00 40.58 4.00
3153 3288 1.546923 CAATCATGGCTGCAAAGGTGA 59.453 47.619 0.50 0.00 0.00 4.02
3154 3289 1.471119 ATCATGGCTGCAAAGGTGAG 58.529 50.000 0.50 0.00 0.00 3.51
3155 3290 0.401356 TCATGGCTGCAAAGGTGAGA 59.599 50.000 0.50 0.00 0.00 3.27
3156 3291 0.524862 CATGGCTGCAAAGGTGAGAC 59.475 55.000 0.50 0.00 0.00 3.36
3157 3292 0.610232 ATGGCTGCAAAGGTGAGACC 60.610 55.000 0.50 0.00 38.99 3.85
3158 3293 1.228245 GGCTGCAAAGGTGAGACCA 60.228 57.895 0.50 0.00 41.95 4.02
3159 3294 1.239968 GGCTGCAAAGGTGAGACCAG 61.240 60.000 0.50 0.00 41.95 4.00
3160 3295 1.239968 GCTGCAAAGGTGAGACCAGG 61.240 60.000 0.00 0.00 41.95 4.45
3161 3296 0.109342 CTGCAAAGGTGAGACCAGGT 59.891 55.000 0.00 0.00 41.95 4.00
3162 3297 0.108585 TGCAAAGGTGAGACCAGGTC 59.891 55.000 12.25 12.25 41.95 3.85
3163 3298 0.398318 GCAAAGGTGAGACCAGGTCT 59.602 55.000 23.18 23.18 46.42 3.85
3170 3305 4.621269 AGACCAGGTCTCACGGTT 57.379 55.556 17.31 0.00 38.71 4.44
3171 3306 3.759865 AGACCAGGTCTCACGGTTA 57.240 52.632 17.31 0.00 38.71 2.85
3172 3307 1.546961 AGACCAGGTCTCACGGTTAG 58.453 55.000 17.31 0.00 38.71 2.34
3173 3308 0.108756 GACCAGGTCTCACGGTTAGC 60.109 60.000 12.94 0.00 31.63 3.09
3174 3309 0.830444 ACCAGGTCTCACGGTTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
3175 3310 0.108615 CCAGGTCTCACGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
3176 3311 0.108615 CAGGTCTCACGGTTAGCAGG 60.109 60.000 0.00 0.00 0.00 4.85
3177 3312 0.542232 AGGTCTCACGGTTAGCAGGT 60.542 55.000 0.00 0.00 0.00 4.00
3178 3313 0.389948 GGTCTCACGGTTAGCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
3179 3314 0.601558 GTCTCACGGTTAGCAGGTGA 59.398 55.000 3.41 3.41 38.29 4.02
3181 3316 3.045518 TCACGGTTAGCAGGTGAGA 57.954 52.632 0.00 0.00 35.89 3.27
3182 3317 0.601558 TCACGGTTAGCAGGTGAGAC 59.398 55.000 0.00 0.00 35.89 3.36
3183 3318 0.389948 CACGGTTAGCAGGTGAGACC 60.390 60.000 0.00 0.00 38.99 3.85
3184 3319 1.218316 CGGTTAGCAGGTGAGACCC 59.782 63.158 0.00 0.00 39.75 4.46
3185 3320 1.218316 GGTTAGCAGGTGAGACCCG 59.782 63.158 0.00 0.00 39.75 5.28
3186 3321 1.542187 GGTTAGCAGGTGAGACCCGT 61.542 60.000 0.00 0.00 39.75 5.28
3187 3322 0.108756 GTTAGCAGGTGAGACCCGTC 60.109 60.000 0.00 0.00 39.75 4.79
3188 3323 1.255667 TTAGCAGGTGAGACCCGTCC 61.256 60.000 0.00 0.00 39.75 4.79
3189 3324 2.151307 TAGCAGGTGAGACCCGTCCT 62.151 60.000 0.00 0.00 39.75 3.85
3190 3325 2.973899 CAGGTGAGACCCGTCCTG 59.026 66.667 0.00 0.00 39.75 3.86
3191 3326 2.851801 AGGTGAGACCCGTCCTGA 59.148 61.111 0.00 0.00 39.75 3.86
3192 3327 1.388531 AGGTGAGACCCGTCCTGAT 59.611 57.895 0.00 0.00 39.75 2.90
3193 3328 0.972983 AGGTGAGACCCGTCCTGATG 60.973 60.000 0.00 0.00 39.75 3.07
3194 3329 1.517832 GTGAGACCCGTCCTGATGG 59.482 63.158 0.00 0.00 37.23 3.51
3195 3330 0.970937 GTGAGACCCGTCCTGATGGA 60.971 60.000 6.98 0.00 39.90 3.41
3196 3331 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.000 6.98 0.00 45.29 3.41
3197 3332 0.390860 GAGACCCGTCCTGATGGATG 59.609 60.000 6.98 0.00 45.29 3.51
3204 3339 1.645034 GTCCTGATGGATGACACGTG 58.355 55.000 15.48 15.48 45.29 4.49
3205 3340 0.536724 TCCTGATGGATGACACGTGG 59.463 55.000 21.57 1.66 37.46 4.94
3206 3341 1.091771 CCTGATGGATGACACGTGGC 61.092 60.000 21.57 19.24 34.57 5.01
3207 3342 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
3209 3344 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
3210 3345 1.331756 GATGGATGACACGTGGCATTC 59.668 52.381 36.07 34.16 45.42 2.67
3211 3346 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
3212 3347 0.447801 GGATGACACGTGGCATTCAC 59.552 55.000 36.07 24.74 45.42 3.18
3213 3348 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
3214 3349 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
3215 3350 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
3216 3351 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
3217 3352 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
3218 3353 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
3219 3354 2.287547 ACACGTGGCATTCACAAATCAC 60.288 45.455 21.57 0.00 46.36 3.06
3220 3355 1.952990 ACGTGGCATTCACAAATCACA 59.047 42.857 0.00 0.00 46.36 3.58
3221 3356 2.360483 ACGTGGCATTCACAAATCACAA 59.640 40.909 0.00 0.00 46.36 3.33
3222 3357 3.181482 ACGTGGCATTCACAAATCACAAA 60.181 39.130 0.00 0.00 46.36 2.83
3223 3358 3.989167 CGTGGCATTCACAAATCACAAAT 59.011 39.130 0.00 0.00 46.36 2.32
3224 3359 4.090354 CGTGGCATTCACAAATCACAAATC 59.910 41.667 0.00 0.00 46.36 2.17
3225 3360 4.989797 GTGGCATTCACAAATCACAAATCA 59.010 37.500 0.00 0.00 45.39 2.57
3226 3361 5.640357 GTGGCATTCACAAATCACAAATCAT 59.360 36.000 0.00 0.00 45.39 2.45
3538 3673 3.575506 AATGCCACGTGTCATCCAT 57.424 47.368 13.12 4.99 0.00 3.41
3539 3674 1.382522 AATGCCACGTGTCATCCATC 58.617 50.000 13.12 0.00 0.00 3.51
3540 3675 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
3541 3676 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
3542 3677 1.091771 GCCACGTGTCATCCATCAGG 61.092 60.000 15.65 0.00 0.00 3.86
3555 3690 4.320910 TCAGGATGAGTCTCGCGT 57.679 55.556 5.77 0.00 42.56 6.01
3556 3691 1.803289 TCAGGATGAGTCTCGCGTG 59.197 57.895 5.77 3.13 42.56 5.34
3557 3692 0.676782 TCAGGATGAGTCTCGCGTGA 60.677 55.000 5.77 6.33 42.56 4.35
3558 3693 0.248417 CAGGATGAGTCTCGCGTGAG 60.248 60.000 19.99 19.99 40.76 3.51
3559 3694 2.609723 CAGGATGAGTCTCGCGTGAGA 61.610 57.143 24.28 24.28 44.40 3.27
3560 3695 3.895324 CAGGATGAGTCTCGCGTGAGAT 61.895 54.545 29.72 18.77 46.88 2.75
3561 3696 5.674516 CAGGATGAGTCTCGCGTGAGATC 62.675 56.522 29.72 24.73 46.88 2.75
3565 3700 4.320910 TCTCGCGTGAGATCTGGT 57.679 55.556 24.28 0.00 46.25 4.00
3566 3701 2.099143 TCTCGCGTGAGATCTGGTC 58.901 57.895 24.28 0.00 46.25 4.02
3567 3702 0.393132 TCTCGCGTGAGATCTGGTCT 60.393 55.000 24.28 0.00 46.25 3.85
3583 3718 8.210265 AGATCTGGTCTCATAGAATTCTTTTCC 58.790 37.037 14.36 8.65 28.45 3.13
3584 3719 6.341316 TCTGGTCTCATAGAATTCTTTTCCG 58.659 40.000 14.36 0.00 0.00 4.30
3585 3720 6.049955 TGGTCTCATAGAATTCTTTTCCGT 57.950 37.500 14.36 0.00 0.00 4.69
3586 3721 7.123697 TCTGGTCTCATAGAATTCTTTTCCGTA 59.876 37.037 14.36 0.00 0.00 4.02
3587 3722 7.792032 TGGTCTCATAGAATTCTTTTCCGTAT 58.208 34.615 14.36 0.00 0.00 3.06
3588 3723 8.265055 TGGTCTCATAGAATTCTTTTCCGTATT 58.735 33.333 14.36 0.00 0.00 1.89
3589 3724 8.552034 GGTCTCATAGAATTCTTTTCCGTATTG 58.448 37.037 14.36 0.00 0.00 1.90
3590 3725 8.552034 GTCTCATAGAATTCTTTTCCGTATTGG 58.448 37.037 14.36 0.00 40.09 3.16
3609 3744 8.526218 GTATTGGACGGCATAGATATATCATG 57.474 38.462 15.08 15.22 0.00 3.07
3610 3745 5.535753 TGGACGGCATAGATATATCATGG 57.464 43.478 15.08 4.62 0.00 3.66
3611 3746 4.344968 TGGACGGCATAGATATATCATGGG 59.655 45.833 15.08 2.97 0.00 4.00
3612 3747 4.588951 GGACGGCATAGATATATCATGGGA 59.411 45.833 15.08 0.00 0.00 4.37
3613 3748 5.247110 GGACGGCATAGATATATCATGGGAT 59.753 44.000 15.08 0.00 37.55 3.85
3614 3749 6.239714 GGACGGCATAGATATATCATGGGATT 60.240 42.308 15.08 0.00 34.89 3.01
3615 3750 6.763355 ACGGCATAGATATATCATGGGATTC 58.237 40.000 15.08 4.22 34.89 2.52
3616 3751 6.169094 CGGCATAGATATATCATGGGATTCC 58.831 44.000 15.08 10.35 34.89 3.01
3662 3797 6.674694 AATCGTTGAAGGATCTGAAGAATG 57.325 37.500 0.42 0.00 0.00 2.67
3663 3798 4.507710 TCGTTGAAGGATCTGAAGAATGG 58.492 43.478 0.00 0.00 0.00 3.16
3664 3799 4.222810 TCGTTGAAGGATCTGAAGAATGGA 59.777 41.667 0.00 0.00 0.00 3.41
3665 3800 4.331168 CGTTGAAGGATCTGAAGAATGGAC 59.669 45.833 0.00 0.00 0.00 4.02
3666 3801 4.494091 TGAAGGATCTGAAGAATGGACC 57.506 45.455 0.00 0.00 0.00 4.46
3667 3802 3.845992 TGAAGGATCTGAAGAATGGACCA 59.154 43.478 0.00 0.00 0.00 4.02
3668 3803 4.289410 TGAAGGATCTGAAGAATGGACCAA 59.711 41.667 0.00 0.00 0.00 3.67
3669 3804 4.500499 AGGATCTGAAGAATGGACCAAG 57.500 45.455 0.00 0.00 0.00 3.61
3670 3805 4.107072 AGGATCTGAAGAATGGACCAAGA 58.893 43.478 0.00 0.00 0.00 3.02
3671 3806 4.725810 AGGATCTGAAGAATGGACCAAGAT 59.274 41.667 0.00 0.36 0.00 2.40
3672 3807 5.062528 GGATCTGAAGAATGGACCAAGATC 58.937 45.833 17.86 17.86 0.00 2.75
3673 3808 4.494091 TCTGAAGAATGGACCAAGATCC 57.506 45.455 0.00 0.00 39.45 3.36
3674 3809 3.200825 TCTGAAGAATGGACCAAGATCCC 59.799 47.826 0.00 0.00 38.06 3.85
3675 3810 2.242196 TGAAGAATGGACCAAGATCCCC 59.758 50.000 0.00 0.00 38.06 4.81
3676 3811 1.985622 AGAATGGACCAAGATCCCCA 58.014 50.000 0.00 0.00 38.06 4.96
3677 3812 2.287584 AGAATGGACCAAGATCCCCAA 58.712 47.619 0.00 0.00 38.06 4.12
3678 3813 2.861317 AGAATGGACCAAGATCCCCAAT 59.139 45.455 0.00 0.00 38.06 3.16
3679 3814 2.761786 ATGGACCAAGATCCCCAATG 57.238 50.000 0.00 0.00 38.06 2.82
3680 3815 0.033208 TGGACCAAGATCCCCAATGC 60.033 55.000 0.00 0.00 38.06 3.56
3681 3816 0.033208 GGACCAAGATCCCCAATGCA 60.033 55.000 0.00 0.00 31.94 3.96
3682 3817 1.412074 GGACCAAGATCCCCAATGCAT 60.412 52.381 0.00 0.00 31.94 3.96
3683 3818 2.158475 GGACCAAGATCCCCAATGCATA 60.158 50.000 0.00 0.00 31.94 3.14
3684 3819 3.565307 GACCAAGATCCCCAATGCATAA 58.435 45.455 0.00 0.00 0.00 1.90
3685 3820 3.960102 GACCAAGATCCCCAATGCATAAA 59.040 43.478 0.00 0.00 0.00 1.40
3686 3821 4.360889 ACCAAGATCCCCAATGCATAAAA 58.639 39.130 0.00 0.00 0.00 1.52
3687 3822 4.406649 ACCAAGATCCCCAATGCATAAAAG 59.593 41.667 0.00 0.00 0.00 2.27
3688 3823 4.406649 CCAAGATCCCCAATGCATAAAAGT 59.593 41.667 0.00 0.00 0.00 2.66
3689 3824 5.104817 CCAAGATCCCCAATGCATAAAAGTT 60.105 40.000 0.00 0.00 0.00 2.66
3690 3825 5.603170 AGATCCCCAATGCATAAAAGTTG 57.397 39.130 0.00 0.00 0.00 3.16
3691 3826 3.608316 TCCCCAATGCATAAAAGTTGC 57.392 42.857 0.00 0.00 40.55 4.17
3701 3836 6.954616 TGCATAAAAGTTGCAATCAAGATG 57.045 33.333 0.59 5.87 46.48 2.90
3702 3837 6.457355 TGCATAAAAGTTGCAATCAAGATGT 58.543 32.000 0.59 0.00 46.48 3.06
3703 3838 7.600960 TGCATAAAAGTTGCAATCAAGATGTA 58.399 30.769 0.59 1.54 46.48 2.29
3704 3839 7.756272 TGCATAAAAGTTGCAATCAAGATGTAG 59.244 33.333 0.59 0.00 46.48 2.74
3705 3840 7.756722 GCATAAAAGTTGCAATCAAGATGTAGT 59.243 33.333 0.59 0.00 39.90 2.73
3753 3888 3.542648 AGACCAGTGCTCAATGATCATG 58.457 45.455 9.46 3.97 0.00 3.07
3769 3904 3.610976 TGCAATCATGGCTGCAGG 58.389 55.556 17.12 0.00 43.44 4.85
3799 3934 9.647918 AGGTATTGGACGACATAGATATATCAT 57.352 33.333 15.08 4.05 0.00 2.45
3800 3935 9.684448 GGTATTGGACGACATAGATATATCATG 57.316 37.037 15.08 16.18 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.074412 ACAATCGTCCTCATCCAAACAC 58.926 45.455 0.00 0.00 0.00 3.32
9 10 6.785337 TTCCTAAGATAACAATCGTCCTCA 57.215 37.500 0.00 0.00 0.00 3.86
82 83 6.070538 AGCTTAGAGAGGAAGAGTTTGCATTA 60.071 38.462 0.00 0.00 0.00 1.90
84 85 4.224818 AGCTTAGAGAGGAAGAGTTTGCAT 59.775 41.667 0.00 0.00 0.00 3.96
154 157 1.753078 GAATTTCCCTCCCGGCCAC 60.753 63.158 2.24 0.00 0.00 5.01
173 176 2.564721 GGTTGGAGCCAAGGCACAC 61.565 63.158 14.40 2.32 44.88 3.82
188 191 1.762370 CCCAAGCCAAAACTCTTGGTT 59.238 47.619 16.81 0.00 43.36 3.67
220 223 1.909141 CTCAAGCACAGCTCTTGCGG 61.909 60.000 10.50 7.84 45.15 5.69
221 224 1.226686 ACTCAAGCACAGCTCTTGCG 61.227 55.000 10.50 6.63 45.15 4.85
230 233 1.526686 CACAGGCCACTCAAGCACA 60.527 57.895 5.01 0.00 0.00 4.57
231 234 2.263741 CCACAGGCCACTCAAGCAC 61.264 63.158 5.01 0.00 0.00 4.40
245 248 1.229428 CTTGAAGAAGAAGCGCCACA 58.771 50.000 2.29 0.00 0.00 4.17
280 283 3.426159 CGGAAAAACTCATCACAATCGGG 60.426 47.826 0.00 0.00 0.00 5.14
286 289 3.138304 CCAGACGGAAAAACTCATCACA 58.862 45.455 0.00 0.00 0.00 3.58
289 292 3.399330 TGTCCAGACGGAAAAACTCATC 58.601 45.455 0.00 0.00 45.20 2.92
292 295 3.626217 ACTTTGTCCAGACGGAAAAACTC 59.374 43.478 0.00 0.00 42.61 3.01
297 301 2.484770 CCTGACTTTGTCCAGACGGAAA 60.485 50.000 0.00 0.00 45.20 3.13
298 302 1.070134 CCTGACTTTGTCCAGACGGAA 59.930 52.381 0.00 0.00 45.20 4.30
304 308 0.322008 GCTCCCCTGACTTTGTCCAG 60.322 60.000 0.00 0.00 0.00 3.86
315 319 0.979665 TTGAAGTCAGAGCTCCCCTG 59.020 55.000 10.93 2.14 0.00 4.45
316 320 1.963985 ATTGAAGTCAGAGCTCCCCT 58.036 50.000 10.93 0.32 0.00 4.79
318 322 3.688673 CAGAAATTGAAGTCAGAGCTCCC 59.311 47.826 10.93 0.00 0.00 4.30
333 337 5.106157 CGCAACAAGATCCCTAACAGAAATT 60.106 40.000 0.00 0.00 0.00 1.82
340 344 0.373716 CGCGCAACAAGATCCCTAAC 59.626 55.000 8.75 0.00 0.00 2.34
351 355 2.271607 TTTGAAAGCACCGCGCAACA 62.272 50.000 8.75 0.00 46.13 3.33
356 360 0.096976 ATCGATTTGAAAGCACCGCG 59.903 50.000 0.00 0.00 0.00 6.46
358 362 3.469899 TGAATCGATTTGAAAGCACCG 57.530 42.857 12.81 0.00 0.00 4.94
371 375 4.621460 GTCGTCATTGAACTCTTGAATCGA 59.379 41.667 0.00 0.00 0.00 3.59
372 376 4.489365 CGTCGTCATTGAACTCTTGAATCG 60.489 45.833 0.00 0.00 0.00 3.34
377 381 2.408704 GGTCGTCGTCATTGAACTCTTG 59.591 50.000 0.00 0.00 0.00 3.02
398 402 1.503542 GCCAACATCTTGAGCCACG 59.496 57.895 0.00 0.00 0.00 4.94
401 405 0.613012 AAGGGCCAACATCTTGAGCC 60.613 55.000 6.18 5.14 40.43 4.70
403 407 2.648059 CCTAAGGGCCAACATCTTGAG 58.352 52.381 6.18 0.00 0.00 3.02
422 426 1.181098 AGTCTTTGTGCATGTGCCCC 61.181 55.000 2.07 0.00 41.18 5.80
474 478 4.766891 ACCACCAAACAATCATTACTCCTG 59.233 41.667 0.00 0.00 0.00 3.86
479 483 5.469479 CCTGAACCACCAAACAATCATTAC 58.531 41.667 0.00 0.00 0.00 1.89
480 484 4.526262 CCCTGAACCACCAAACAATCATTA 59.474 41.667 0.00 0.00 0.00 1.90
482 486 2.899256 CCCTGAACCACCAAACAATCAT 59.101 45.455 0.00 0.00 0.00 2.45
487 491 0.106419 GGTCCCTGAACCACCAAACA 60.106 55.000 0.00 0.00 39.27 2.83
494 498 0.544357 ACATCGAGGTCCCTGAACCA 60.544 55.000 0.00 0.00 42.12 3.67
598 602 9.511144 CAAACTAGGTATCAAACGTTTTTCTTT 57.489 29.630 11.66 0.00 0.00 2.52
599 603 8.895737 TCAAACTAGGTATCAAACGTTTTTCTT 58.104 29.630 11.66 1.63 0.00 2.52
601 605 9.673454 ATTCAAACTAGGTATCAAACGTTTTTC 57.327 29.630 11.66 2.18 0.00 2.29
608 612 9.406828 GGTTCAAATTCAAACTAGGTATCAAAC 57.593 33.333 0.00 0.00 0.00 2.93
612 616 8.793592 AGTTGGTTCAAATTCAAACTAGGTATC 58.206 33.333 0.00 0.00 0.00 2.24
644 648 1.269448 TGTTTTTGGAGGCTTCGATGC 59.731 47.619 14.55 14.55 0.00 3.91
648 652 2.584791 CGATTGTTTTTGGAGGCTTCG 58.415 47.619 0.00 0.00 0.00 3.79
686 690 7.782049 TGGAATACTACACTTTAGATGGAGTG 58.218 38.462 0.00 2.22 41.53 3.51
704 708 5.297029 GTCCAGCAGGAGTTTAATGGAATAC 59.703 44.000 0.00 0.00 46.92 1.89
706 710 4.263905 TGTCCAGCAGGAGTTTAATGGAAT 60.264 41.667 0.00 0.00 46.92 3.01
707 711 3.073798 TGTCCAGCAGGAGTTTAATGGAA 59.926 43.478 0.00 0.00 46.92 3.53
708 712 2.642311 TGTCCAGCAGGAGTTTAATGGA 59.358 45.455 0.00 0.00 46.92 3.41
709 713 3.071874 TGTCCAGCAGGAGTTTAATGG 57.928 47.619 0.00 0.00 46.92 3.16
733 737 3.587797 AGTGAAAAGCATGCAGGAATG 57.412 42.857 21.98 0.00 0.00 2.67
751 755 8.015658 GTGCTACTCGTATCATTTTTCAAAAGT 58.984 33.333 0.00 0.00 0.00 2.66
768 772 1.376543 TAGGAGGAACGTGCTACTCG 58.623 55.000 0.00 0.00 29.22 4.18
777 783 8.985805 GTATACCAAATACATTTAGGAGGAACG 58.014 37.037 0.00 0.00 0.00 3.95
881 896 4.867047 CGATGTATATGCATGGGAGAGAAC 59.133 45.833 11.33 0.00 0.00 3.01
925 958 2.187946 GTGTGGGGGAGATGCGAG 59.812 66.667 0.00 0.00 0.00 5.03
932 965 0.771127 TTTCTTGGAGTGTGGGGGAG 59.229 55.000 0.00 0.00 0.00 4.30
1320 1388 4.367023 GACAGGTACACGGCGCCA 62.367 66.667 28.98 2.89 0.00 5.69
1512 1580 1.899534 GGATCGTCGGAGGAGGGAG 60.900 68.421 6.55 0.00 0.00 4.30
1531 1599 1.369839 TTTTTCGTCGGTGCAGTGCA 61.370 50.000 15.37 15.37 35.60 4.57
1534 1602 1.588674 TCATTTTTCGTCGGTGCAGT 58.411 45.000 0.00 0.00 0.00 4.40
1536 1604 3.422417 TTTTCATTTTTCGTCGGTGCA 57.578 38.095 0.00 0.00 0.00 4.57
1541 1609 9.796062 ATTTGATTTCATTTTCATTTTTCGTCG 57.204 25.926 0.00 0.00 0.00 5.12
1543 1611 9.384682 GCATTTGATTTCATTTTCATTTTTCGT 57.615 25.926 0.00 0.00 0.00 3.85
1545 1613 9.131416 GGGCATTTGATTTCATTTTCATTTTTC 57.869 29.630 0.00 0.00 0.00 2.29
1627 1713 1.557371 GAAGGAGGAGGAAGTTCCCTG 59.443 57.143 18.65 0.00 37.19 4.45
1707 1799 7.974504 ACAGGAAGAGGAATTTGAGTTACTTA 58.025 34.615 0.00 0.00 0.00 2.24
1708 1800 6.842676 ACAGGAAGAGGAATTTGAGTTACTT 58.157 36.000 0.00 0.00 0.00 2.24
1710 1802 8.617290 TTTACAGGAAGAGGAATTTGAGTTAC 57.383 34.615 0.00 0.00 0.00 2.50
1711 1803 8.656806 TCTTTACAGGAAGAGGAATTTGAGTTA 58.343 33.333 0.00 0.00 32.19 2.24
1714 1806 7.663493 AGTTCTTTACAGGAAGAGGAATTTGAG 59.337 37.037 0.00 0.00 37.01 3.02
1715 1807 7.518188 AGTTCTTTACAGGAAGAGGAATTTGA 58.482 34.615 0.00 0.00 37.01 2.69
1716 1808 7.445402 TGAGTTCTTTACAGGAAGAGGAATTTG 59.555 37.037 0.00 0.00 37.01 2.32
1730 1822 9.847224 AAGGTAGAGAAATTTGAGTTCTTTACA 57.153 29.630 15.73 0.00 41.26 2.41
1781 1873 9.120538 ACACACCTGACAATGATAAAATATACC 57.879 33.333 0.00 0.00 0.00 2.73
1808 1902 5.353394 TCAATCCAGCCTACGTATTTTCT 57.647 39.130 0.00 0.00 0.00 2.52
1817 1911 4.016444 TCCACATTTTCAATCCAGCCTAC 58.984 43.478 0.00 0.00 0.00 3.18
1822 1916 8.306038 TCAATTTACTCCACATTTTCAATCCAG 58.694 33.333 0.00 0.00 0.00 3.86
1825 1919 9.696917 AAGTCAATTTACTCCACATTTTCAATC 57.303 29.630 0.00 0.00 0.00 2.67
1837 1931 5.235616 TCGTGAACACAAGTCAATTTACTCC 59.764 40.000 5.80 0.00 0.00 3.85
1849 1943 3.428870 GGTACATCACTCGTGAACACAAG 59.571 47.826 3.60 0.00 43.58 3.16
1852 1946 2.729882 GTGGTACATCACTCGTGAACAC 59.270 50.000 3.60 5.45 44.52 3.32
1854 1948 2.987149 CAGTGGTACATCACTCGTGAAC 59.013 50.000 3.60 0.00 45.24 3.18
1857 1951 1.350193 GCAGTGGTACATCACTCGTG 58.650 55.000 2.16 0.00 45.24 4.35
1859 1953 0.532573 AGGCAGTGGTACATCACTCG 59.467 55.000 2.16 1.27 45.24 4.18
1860 1954 2.159085 GGTAGGCAGTGGTACATCACTC 60.159 54.545 2.16 0.00 45.24 3.51
1862 1956 1.831736 AGGTAGGCAGTGGTACATCAC 59.168 52.381 0.00 0.00 44.52 3.06
1863 1957 2.247699 AGGTAGGCAGTGGTACATCA 57.752 50.000 0.00 0.00 44.52 3.07
1864 1958 4.344102 TCATTAGGTAGGCAGTGGTACATC 59.656 45.833 0.00 0.00 44.52 3.06
1865 1959 4.295201 TCATTAGGTAGGCAGTGGTACAT 58.705 43.478 0.00 0.00 44.52 2.29
1866 1960 3.704566 CTCATTAGGTAGGCAGTGGTACA 59.295 47.826 0.00 0.00 0.00 2.90
1867 1961 3.958798 TCTCATTAGGTAGGCAGTGGTAC 59.041 47.826 0.00 0.00 0.00 3.34
1868 1962 4.259933 TCTCATTAGGTAGGCAGTGGTA 57.740 45.455 0.00 0.00 0.00 3.25
1871 1983 5.705441 TGTTTTTCTCATTAGGTAGGCAGTG 59.295 40.000 0.00 0.00 0.00 3.66
1885 1997 0.465460 AGGTGGCGCTGTTTTTCTCA 60.465 50.000 7.64 0.00 0.00 3.27
1894 2006 0.957395 AATTCAGTGAGGTGGCGCTG 60.957 55.000 7.64 0.00 45.36 5.18
1896 2008 0.598065 AAAATTCAGTGAGGTGGCGC 59.402 50.000 0.00 0.00 0.00 6.53
1898 2010 5.163612 GGATAGAAAAATTCAGTGAGGTGGC 60.164 44.000 0.00 0.00 0.00 5.01
1906 2018 5.259632 AGCAGCAGGATAGAAAAATTCAGT 58.740 37.500 0.00 0.00 0.00 3.41
1908 2020 6.594788 AAAGCAGCAGGATAGAAAAATTCA 57.405 33.333 0.00 0.00 0.00 2.57
1909 2021 7.599998 TCAAAAAGCAGCAGGATAGAAAAATTC 59.400 33.333 0.00 0.00 0.00 2.17
1910 2022 7.444299 TCAAAAAGCAGCAGGATAGAAAAATT 58.556 30.769 0.00 0.00 0.00 1.82
1912 2024 6.403866 TCAAAAAGCAGCAGGATAGAAAAA 57.596 33.333 0.00 0.00 0.00 1.94
1913 2025 6.017400 CTCAAAAAGCAGCAGGATAGAAAA 57.983 37.500 0.00 0.00 0.00 2.29
1943 2057 6.258507 ACGAAAACTAACATTGTCGTTAACCT 59.741 34.615 0.00 0.00 38.47 3.50
1946 2060 7.010367 ACTGACGAAAACTAACATTGTCGTTAA 59.990 33.333 5.29 0.00 41.40 2.01
1959 2073 6.339730 TGTTGTTTAGGACTGACGAAAACTA 58.660 36.000 0.00 0.00 32.57 2.24
1961 2075 5.473796 TGTTGTTTAGGACTGACGAAAAC 57.526 39.130 0.00 0.00 0.00 2.43
1962 2076 6.018262 CAGATGTTGTTTAGGACTGACGAAAA 60.018 38.462 0.00 0.00 0.00 2.29
1964 2078 4.988540 CAGATGTTGTTTAGGACTGACGAA 59.011 41.667 0.00 0.00 0.00 3.85
1967 2081 3.123621 CGCAGATGTTGTTTAGGACTGAC 59.876 47.826 0.00 0.00 0.00 3.51
1968 2082 3.325870 CGCAGATGTTGTTTAGGACTGA 58.674 45.455 0.00 0.00 0.00 3.41
1969 2083 2.159653 GCGCAGATGTTGTTTAGGACTG 60.160 50.000 0.30 0.00 0.00 3.51
1971 2085 1.201921 CGCGCAGATGTTGTTTAGGAC 60.202 52.381 8.75 0.00 0.00 3.85
1972 2086 1.075542 CGCGCAGATGTTGTTTAGGA 58.924 50.000 8.75 0.00 0.00 2.94
1973 2087 0.521242 GCGCGCAGATGTTGTTTAGG 60.521 55.000 29.10 0.00 0.00 2.69
1974 2088 0.853224 CGCGCGCAGATGTTGTTTAG 60.853 55.000 32.61 5.56 0.00 1.85
1975 2089 1.131623 CGCGCGCAGATGTTGTTTA 59.868 52.632 32.61 0.00 0.00 2.01
1976 2090 2.127270 CGCGCGCAGATGTTGTTT 60.127 55.556 32.61 0.00 0.00 2.83
1977 2091 4.741781 GCGCGCGCAGATGTTGTT 62.742 61.111 46.11 0.00 41.49 2.83
1990 2104 0.521242 GTGGTGATTAAGCAAGCGCG 60.521 55.000 0.00 0.00 45.49 6.86
1991 2105 0.521242 CGTGGTGATTAAGCAAGCGC 60.521 55.000 0.00 0.00 38.21 5.92
1992 2106 3.586039 CGTGGTGATTAAGCAAGCG 57.414 52.632 0.00 0.00 38.21 4.68
2004 2118 2.788191 GAACAGAGAGGGGCGTGGTG 62.788 65.000 0.00 0.00 0.00 4.17
2012 2126 3.580458 TGAAAAGAGGAGAACAGAGAGGG 59.420 47.826 0.00 0.00 0.00 4.30
2015 2129 3.005897 CGGTGAAAAGAGGAGAACAGAGA 59.994 47.826 0.00 0.00 0.00 3.10
2023 2137 1.593196 TGTTGCGGTGAAAAGAGGAG 58.407 50.000 0.00 0.00 0.00 3.69
2025 2139 2.861462 TTTGTTGCGGTGAAAAGAGG 57.139 45.000 0.00 0.00 0.00 3.69
2031 2145 9.295214 CATATTTACATAATTTGTTGCGGTGAA 57.705 29.630 0.00 0.00 39.87 3.18
2033 2147 7.704472 ACCATATTTACATAATTTGTTGCGGTG 59.296 33.333 0.00 0.00 39.87 4.94
2035 2149 9.737427 TTACCATATTTACATAATTTGTTGCGG 57.263 29.630 0.00 0.00 39.87 5.69
2067 2181 9.420118 TCAGCCATTTAACCAGTGAATAATATT 57.580 29.630 0.00 0.00 0.00 1.28
2068 2182 8.995027 TCAGCCATTTAACCAGTGAATAATAT 57.005 30.769 0.00 0.00 0.00 1.28
2069 2183 8.815565 TTCAGCCATTTAACCAGTGAATAATA 57.184 30.769 0.00 0.00 0.00 0.98
2070 2184 7.716799 TTCAGCCATTTAACCAGTGAATAAT 57.283 32.000 0.00 0.00 0.00 1.28
2071 2185 7.716799 ATTCAGCCATTTAACCAGTGAATAA 57.283 32.000 0.00 0.00 32.71 1.40
2072 2186 7.716799 AATTCAGCCATTTAACCAGTGAATA 57.283 32.000 0.00 0.00 33.19 1.75
2073 2187 6.610075 AATTCAGCCATTTAACCAGTGAAT 57.390 33.333 0.00 0.00 35.25 2.57
2074 2188 6.183360 ACAAATTCAGCCATTTAACCAGTGAA 60.183 34.615 0.00 0.00 0.00 3.18
2075 2189 5.304101 ACAAATTCAGCCATTTAACCAGTGA 59.696 36.000 0.00 0.00 0.00 3.41
2076 2190 5.540911 ACAAATTCAGCCATTTAACCAGTG 58.459 37.500 0.00 0.00 0.00 3.66
2080 2194 5.408299 GGACAACAAATTCAGCCATTTAACC 59.592 40.000 0.00 0.00 0.00 2.85
2089 2203 3.814945 CGAGAAGGACAACAAATTCAGC 58.185 45.455 0.00 0.00 0.00 4.26
2103 2217 1.380515 TCCCTCCTCTGCGAGAAGG 60.381 63.158 4.29 4.29 30.97 3.46
2104 2218 1.391157 CCTCCCTCCTCTGCGAGAAG 61.391 65.000 7.07 0.00 30.97 2.85
2107 2221 3.535962 GCCTCCCTCCTCTGCGAG 61.536 72.222 0.00 0.00 0.00 5.03
2829 2952 1.923356 TCTGAAAAATGGGGTCCAGC 58.077 50.000 0.00 0.00 36.75 4.85
2861 2984 5.963253 AGAAGGAGGAGAAGAAGATGATGAA 59.037 40.000 0.00 0.00 0.00 2.57
2862 2985 5.527385 AGAAGGAGGAGAAGAAGATGATGA 58.473 41.667 0.00 0.00 0.00 2.92
2863 2986 5.221501 GGAGAAGGAGGAGAAGAAGATGATG 60.222 48.000 0.00 0.00 0.00 3.07
2864 2987 4.901250 GGAGAAGGAGGAGAAGAAGATGAT 59.099 45.833 0.00 0.00 0.00 2.45
2889 3012 3.930229 GTCTAACACACACACACACAAGA 59.070 43.478 0.00 0.00 0.00 3.02
2890 3013 3.682377 TGTCTAACACACACACACACAAG 59.318 43.478 0.00 0.00 0.00 3.16
2891 3014 3.665190 TGTCTAACACACACACACACAA 58.335 40.909 0.00 0.00 0.00 3.33
2905 3028 8.475639 TCCATCTTCTACCACTAAATGTCTAAC 58.524 37.037 0.00 0.00 0.00 2.34
2926 3049 5.294552 GCACTAGACACTAAACCAATCCATC 59.705 44.000 0.00 0.00 0.00 3.51
3100 3235 5.076182 TGAGCACCTATCATTTTTGGAACA 58.924 37.500 0.00 0.00 0.00 3.18
3101 3236 5.643379 TGAGCACCTATCATTTTTGGAAC 57.357 39.130 0.00 0.00 0.00 3.62
3102 3237 6.436847 TCATTGAGCACCTATCATTTTTGGAA 59.563 34.615 0.00 0.00 0.00 3.53
3103 3238 5.951148 TCATTGAGCACCTATCATTTTTGGA 59.049 36.000 0.00 0.00 0.00 3.53
3104 3239 6.211587 TCATTGAGCACCTATCATTTTTGG 57.788 37.500 0.00 0.00 0.00 3.28
3105 3240 7.485810 TGATCATTGAGCACCTATCATTTTTG 58.514 34.615 0.00 0.00 0.00 2.44
3106 3241 7.649533 TGATCATTGAGCACCTATCATTTTT 57.350 32.000 0.00 0.00 0.00 1.94
3107 3242 7.039923 GGATGATCATTGAGCACCTATCATTTT 60.040 37.037 10.14 0.00 34.96 1.82
3108 3243 6.433404 GGATGATCATTGAGCACCTATCATTT 59.567 38.462 10.14 0.00 34.96 2.32
3109 3244 5.944599 GGATGATCATTGAGCACCTATCATT 59.055 40.000 10.14 0.00 34.96 2.57
3110 3245 5.013808 TGGATGATCATTGAGCACCTATCAT 59.986 40.000 10.14 1.68 36.91 2.45
3111 3246 4.348754 TGGATGATCATTGAGCACCTATCA 59.651 41.667 10.14 0.00 28.34 2.15
3112 3247 4.903054 TGGATGATCATTGAGCACCTATC 58.097 43.478 10.14 0.80 28.34 2.08
3113 3248 4.987963 TGGATGATCATTGAGCACCTAT 57.012 40.909 10.14 0.00 28.34 2.57
3114 3249 4.776435 TTGGATGATCATTGAGCACCTA 57.224 40.909 10.14 5.37 28.34 3.08
3115 3250 3.657398 TTGGATGATCATTGAGCACCT 57.343 42.857 10.14 0.00 28.34 4.00
3116 3251 3.887110 TGATTGGATGATCATTGAGCACC 59.113 43.478 10.14 10.90 28.34 5.01
3117 3252 5.461526 CATGATTGGATGATCATTGAGCAC 58.538 41.667 10.14 1.74 42.57 4.40
3118 3253 4.522789 CCATGATTGGATGATCATTGAGCA 59.477 41.667 10.14 7.12 46.92 4.26
3119 3254 4.618460 GCCATGATTGGATGATCATTGAGC 60.618 45.833 10.14 2.70 46.92 4.26
3120 3255 4.767409 AGCCATGATTGGATGATCATTGAG 59.233 41.667 10.14 0.00 46.92 3.02
3121 3256 4.736473 AGCCATGATTGGATGATCATTGA 58.264 39.130 10.14 0.00 46.92 2.57
3130 3265 1.760613 CCTTTGCAGCCATGATTGGAT 59.239 47.619 0.00 0.00 46.92 3.41
3131 3266 1.187974 CCTTTGCAGCCATGATTGGA 58.812 50.000 0.00 0.00 46.92 3.53
3132 3267 0.899720 ACCTTTGCAGCCATGATTGG 59.100 50.000 0.00 0.00 46.66 3.16
3133 3268 1.546923 TCACCTTTGCAGCCATGATTG 59.453 47.619 0.00 0.00 0.00 2.67
3134 3269 1.822990 CTCACCTTTGCAGCCATGATT 59.177 47.619 0.00 0.00 0.00 2.57
3135 3270 1.005097 TCTCACCTTTGCAGCCATGAT 59.995 47.619 0.00 0.00 0.00 2.45
3136 3271 0.401356 TCTCACCTTTGCAGCCATGA 59.599 50.000 0.00 0.00 0.00 3.07
3137 3272 0.524862 GTCTCACCTTTGCAGCCATG 59.475 55.000 0.00 0.00 0.00 3.66
3138 3273 0.610232 GGTCTCACCTTTGCAGCCAT 60.610 55.000 0.00 0.00 34.73 4.40
3139 3274 1.228245 GGTCTCACCTTTGCAGCCA 60.228 57.895 0.00 0.00 34.73 4.75
3140 3275 1.228245 TGGTCTCACCTTTGCAGCC 60.228 57.895 0.00 0.00 39.58 4.85
3141 3276 1.239968 CCTGGTCTCACCTTTGCAGC 61.240 60.000 0.00 0.00 39.58 5.25
3142 3277 0.109342 ACCTGGTCTCACCTTTGCAG 59.891 55.000 0.00 0.00 39.58 4.41
3143 3278 0.108585 GACCTGGTCTCACCTTTGCA 59.891 55.000 19.53 0.00 39.58 4.08
3144 3279 0.398318 AGACCTGGTCTCACCTTTGC 59.602 55.000 23.49 0.00 38.71 3.68
3153 3288 1.546961 CTAACCGTGAGACCTGGTCT 58.453 55.000 28.70 28.70 46.42 3.85
3154 3289 0.108756 GCTAACCGTGAGACCTGGTC 60.109 60.000 19.20 19.20 34.11 4.02
3155 3290 0.830444 TGCTAACCGTGAGACCTGGT 60.830 55.000 0.00 0.00 37.68 4.00
3156 3291 0.108615 CTGCTAACCGTGAGACCTGG 60.109 60.000 0.00 0.00 0.00 4.45
3157 3292 0.108615 CCTGCTAACCGTGAGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
3158 3293 0.542232 ACCTGCTAACCGTGAGACCT 60.542 55.000 0.00 0.00 0.00 3.85
3159 3294 0.389948 CACCTGCTAACCGTGAGACC 60.390 60.000 0.00 0.00 0.00 3.85
3160 3295 0.601558 TCACCTGCTAACCGTGAGAC 59.398 55.000 0.00 0.00 32.85 3.36
3161 3296 3.045518 TCACCTGCTAACCGTGAGA 57.954 52.632 0.00 0.00 32.85 3.27
3162 3297 3.425578 CTCACCTGCTAACCGTGAG 57.574 57.895 2.35 2.35 45.33 3.51
3163 3298 0.601558 GTCTCACCTGCTAACCGTGA 59.398 55.000 0.00 0.00 35.34 4.35
3164 3299 0.389948 GGTCTCACCTGCTAACCGTG 60.390 60.000 0.00 0.00 34.73 4.94
3165 3300 1.542187 GGGTCTCACCTGCTAACCGT 61.542 60.000 0.00 0.00 38.64 4.83
3166 3301 1.218316 GGGTCTCACCTGCTAACCG 59.782 63.158 0.00 0.00 38.64 4.44
3167 3302 1.218316 CGGGTCTCACCTGCTAACC 59.782 63.158 0.00 0.00 37.90 2.85
3168 3303 4.913126 CGGGTCTCACCTGCTAAC 57.087 61.111 0.00 0.00 37.90 2.34
3174 3309 0.972983 CATCAGGACGGGTCTCACCT 60.973 60.000 0.00 0.00 38.64 4.00
3175 3310 1.517832 CATCAGGACGGGTCTCACC 59.482 63.158 0.00 0.00 37.60 4.02
3176 3311 0.970937 TCCATCAGGACGGGTCTCAC 60.971 60.000 0.00 0.00 39.61 3.51
3177 3312 1.386550 TCCATCAGGACGGGTCTCA 59.613 57.895 0.00 0.00 39.61 3.27
3178 3313 4.356979 TCCATCAGGACGGGTCTC 57.643 61.111 0.00 0.00 39.61 3.36
3187 3322 1.091771 GCCACGTGTCATCCATCAGG 61.092 60.000 15.65 0.00 0.00 3.86
3188 3323 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
3189 3324 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
3190 3325 1.331756 GAATGCCACGTGTCATCCATC 59.668 52.381 13.12 3.25 0.00 3.51
3191 3326 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
3192 3327 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
3193 3328 0.447801 GTGAATGCCACGTGTCATCC 59.552 55.000 13.12 0.00 35.86 3.51
3194 3329 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
3202 3337 4.989797 TGATTTGTGATTTGTGAATGCCAC 59.010 37.500 0.00 0.00 45.88 5.01
3203 3338 5.211174 TGATTTGTGATTTGTGAATGCCA 57.789 34.783 0.00 0.00 0.00 4.92
3520 3655 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
3522 3657 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
3523 3658 1.091771 CCTGATGGATGACACGTGGC 61.092 60.000 21.57 19.24 34.57 5.01
3524 3659 0.536724 TCCTGATGGATGACACGTGG 59.463 55.000 21.57 1.66 37.46 4.94
3535 3670 0.318529 CGCGAGACTCATCCTGATGG 60.319 60.000 0.00 1.57 39.24 3.51
3536 3671 0.383590 ACGCGAGACTCATCCTGATG 59.616 55.000 15.93 0.55 40.09 3.07
3537 3672 0.383590 CACGCGAGACTCATCCTGAT 59.616 55.000 15.93 0.00 0.00 2.90
3538 3673 0.676782 TCACGCGAGACTCATCCTGA 60.677 55.000 15.93 0.00 0.00 3.86
3539 3674 0.248417 CTCACGCGAGACTCATCCTG 60.248 60.000 15.93 0.00 42.34 3.86
3540 3675 0.393132 TCTCACGCGAGACTCATCCT 60.393 55.000 15.93 0.00 43.55 3.24
3541 3676 2.099143 TCTCACGCGAGACTCATCC 58.901 57.895 15.93 0.00 43.55 3.51
3549 3684 2.102554 AGACCAGATCTCACGCGAG 58.897 57.895 15.93 4.59 40.98 5.03
3550 3685 4.320910 AGACCAGATCTCACGCGA 57.679 55.556 15.93 0.00 28.16 5.87
3557 3692 8.210265 GGAAAAGAATTCTATGAGACCAGATCT 58.790 37.037 8.75 0.00 41.91 2.75
3558 3693 7.170658 CGGAAAAGAATTCTATGAGACCAGATC 59.829 40.741 8.75 0.00 0.00 2.75
3559 3694 6.989169 CGGAAAAGAATTCTATGAGACCAGAT 59.011 38.462 8.75 0.00 0.00 2.90
3560 3695 6.070767 ACGGAAAAGAATTCTATGAGACCAGA 60.071 38.462 8.75 0.00 0.00 3.86
3561 3696 6.109359 ACGGAAAAGAATTCTATGAGACCAG 58.891 40.000 8.75 6.43 0.00 4.00
3562 3697 6.049955 ACGGAAAAGAATTCTATGAGACCA 57.950 37.500 8.75 0.00 0.00 4.02
3563 3698 8.552034 CAATACGGAAAAGAATTCTATGAGACC 58.448 37.037 8.75 6.24 0.00 3.85
3564 3699 8.552034 CCAATACGGAAAAGAATTCTATGAGAC 58.448 37.037 8.75 0.00 36.56 3.36
3565 3700 8.482943 TCCAATACGGAAAAGAATTCTATGAGA 58.517 33.333 8.75 0.00 42.52 3.27
3566 3701 8.662781 TCCAATACGGAAAAGAATTCTATGAG 57.337 34.615 8.75 2.65 42.52 2.90
3584 3719 7.600375 CCATGATATATCTATGCCGTCCAATAC 59.400 40.741 13.79 0.00 0.00 1.89
3585 3720 7.256296 CCCATGATATATCTATGCCGTCCAATA 60.256 40.741 13.79 0.00 0.00 1.90
3586 3721 6.464892 CCCATGATATATCTATGCCGTCCAAT 60.465 42.308 13.79 0.00 0.00 3.16
3587 3722 5.163311 CCCATGATATATCTATGCCGTCCAA 60.163 44.000 13.79 0.00 0.00 3.53
3588 3723 4.344968 CCCATGATATATCTATGCCGTCCA 59.655 45.833 13.79 0.00 0.00 4.02
3589 3724 4.588951 TCCCATGATATATCTATGCCGTCC 59.411 45.833 13.79 0.00 0.00 4.79
3590 3725 5.791336 TCCCATGATATATCTATGCCGTC 57.209 43.478 13.79 0.00 0.00 4.79
3591 3726 6.239714 GGAATCCCATGATATATCTATGCCGT 60.240 42.308 13.79 2.90 0.00 5.68
3592 3727 6.169094 GGAATCCCATGATATATCTATGCCG 58.831 44.000 13.79 8.39 0.00 5.69
3593 3728 7.083062 TGGAATCCCATGATATATCTATGCC 57.917 40.000 13.79 10.95 37.58 4.40
3636 3771 9.481340 CATTCTTCAGATCCTTCAACGATTATA 57.519 33.333 0.00 0.00 0.00 0.98
3637 3772 7.443575 CCATTCTTCAGATCCTTCAACGATTAT 59.556 37.037 0.00 0.00 0.00 1.28
3638 3773 6.763135 CCATTCTTCAGATCCTTCAACGATTA 59.237 38.462 0.00 0.00 0.00 1.75
3639 3774 5.587844 CCATTCTTCAGATCCTTCAACGATT 59.412 40.000 0.00 0.00 0.00 3.34
3640 3775 5.104776 TCCATTCTTCAGATCCTTCAACGAT 60.105 40.000 0.00 0.00 0.00 3.73
3641 3776 4.222810 TCCATTCTTCAGATCCTTCAACGA 59.777 41.667 0.00 0.00 0.00 3.85
3642 3777 4.331168 GTCCATTCTTCAGATCCTTCAACG 59.669 45.833 0.00 0.00 0.00 4.10
3643 3778 4.637977 GGTCCATTCTTCAGATCCTTCAAC 59.362 45.833 0.00 0.00 0.00 3.18
3644 3779 4.289410 TGGTCCATTCTTCAGATCCTTCAA 59.711 41.667 0.00 0.00 0.00 2.69
3645 3780 3.845992 TGGTCCATTCTTCAGATCCTTCA 59.154 43.478 0.00 0.00 0.00 3.02
3646 3781 4.494091 TGGTCCATTCTTCAGATCCTTC 57.506 45.455 0.00 0.00 0.00 3.46
3647 3782 4.537688 TCTTGGTCCATTCTTCAGATCCTT 59.462 41.667 0.00 0.00 0.00 3.36
3648 3783 4.107072 TCTTGGTCCATTCTTCAGATCCT 58.893 43.478 0.00 0.00 0.00 3.24
3649 3784 4.494091 TCTTGGTCCATTCTTCAGATCC 57.506 45.455 0.00 0.00 0.00 3.36
3650 3785 5.062528 GGATCTTGGTCCATTCTTCAGATC 58.937 45.833 16.15 16.15 38.20 2.75
3651 3786 4.141298 GGGATCTTGGTCCATTCTTCAGAT 60.141 45.833 2.08 1.77 40.17 2.90
3652 3787 3.200825 GGGATCTTGGTCCATTCTTCAGA 59.799 47.826 2.08 0.00 40.17 3.27
3653 3788 3.549794 GGGATCTTGGTCCATTCTTCAG 58.450 50.000 2.08 0.00 40.17 3.02
3654 3789 2.242196 GGGGATCTTGGTCCATTCTTCA 59.758 50.000 2.08 0.00 40.17 3.02
3655 3790 2.242196 TGGGGATCTTGGTCCATTCTTC 59.758 50.000 2.08 0.00 40.17 2.87
3656 3791 2.287584 TGGGGATCTTGGTCCATTCTT 58.712 47.619 2.08 0.00 40.17 2.52
3657 3792 1.985622 TGGGGATCTTGGTCCATTCT 58.014 50.000 2.08 0.00 40.17 2.40
3658 3793 2.826674 TTGGGGATCTTGGTCCATTC 57.173 50.000 2.08 0.00 40.17 2.67
3659 3794 2.956385 GCATTGGGGATCTTGGTCCATT 60.956 50.000 2.08 0.00 40.17 3.16
3660 3795 1.412074 GCATTGGGGATCTTGGTCCAT 60.412 52.381 2.08 0.00 40.17 3.41
3661 3796 0.033208 GCATTGGGGATCTTGGTCCA 60.033 55.000 2.08 0.00 40.17 4.02
3662 3797 0.033208 TGCATTGGGGATCTTGGTCC 60.033 55.000 0.00 0.00 37.56 4.46
3663 3798 2.077687 ATGCATTGGGGATCTTGGTC 57.922 50.000 0.00 0.00 0.00 4.02
3664 3799 3.686227 TTATGCATTGGGGATCTTGGT 57.314 42.857 3.54 0.00 0.00 3.67
3665 3800 4.406649 ACTTTTATGCATTGGGGATCTTGG 59.593 41.667 3.54 0.00 0.00 3.61
3666 3801 5.603170 ACTTTTATGCATTGGGGATCTTG 57.397 39.130 3.54 0.00 0.00 3.02
3667 3802 5.627503 GCAACTTTTATGCATTGGGGATCTT 60.628 40.000 3.54 0.00 43.29 2.40
3668 3803 4.141869 GCAACTTTTATGCATTGGGGATCT 60.142 41.667 3.54 0.00 43.29 2.75
3669 3804 4.122046 GCAACTTTTATGCATTGGGGATC 58.878 43.478 3.54 0.00 43.29 3.36
3670 3805 4.141233 GCAACTTTTATGCATTGGGGAT 57.859 40.909 3.54 0.00 43.29 3.85
3671 3806 3.608316 GCAACTTTTATGCATTGGGGA 57.392 42.857 3.54 0.00 43.29 4.81
3679 3814 6.956299 ACATCTTGATTGCAACTTTTATGC 57.044 33.333 0.00 0.00 44.08 3.14
3680 3815 9.282247 GACTACATCTTGATTGCAACTTTTATG 57.718 33.333 0.00 6.34 0.00 1.90
3681 3816 9.236006 AGACTACATCTTGATTGCAACTTTTAT 57.764 29.630 0.00 0.00 31.62 1.40
3682 3817 8.621532 AGACTACATCTTGATTGCAACTTTTA 57.378 30.769 0.00 0.00 31.62 1.52
3683 3818 7.516198 AGACTACATCTTGATTGCAACTTTT 57.484 32.000 0.00 0.00 31.62 2.27
3684 3819 8.621532 TTAGACTACATCTTGATTGCAACTTT 57.378 30.769 0.00 0.00 39.04 2.66
3685 3820 8.671921 CATTAGACTACATCTTGATTGCAACTT 58.328 33.333 0.00 0.00 39.04 2.66
3686 3821 8.043113 TCATTAGACTACATCTTGATTGCAACT 58.957 33.333 0.00 0.00 39.04 3.16
3687 3822 8.201554 TCATTAGACTACATCTTGATTGCAAC 57.798 34.615 0.00 0.00 39.04 4.17
3688 3823 8.260114 TCTCATTAGACTACATCTTGATTGCAA 58.740 33.333 0.00 0.00 39.04 4.08
3689 3824 7.785033 TCTCATTAGACTACATCTTGATTGCA 58.215 34.615 0.00 0.00 39.04 4.08
3690 3825 8.654230 TTCTCATTAGACTACATCTTGATTGC 57.346 34.615 0.00 0.00 39.04 3.56
3697 3832 9.965902 ACCAAAATTTCTCATTAGACTACATCT 57.034 29.630 0.00 0.00 41.95 2.90
3700 3835 9.010029 GGAACCAAAATTTCTCATTAGACTACA 57.990 33.333 0.00 0.00 0.00 2.74
3701 3836 9.010029 TGGAACCAAAATTTCTCATTAGACTAC 57.990 33.333 0.00 0.00 0.00 2.73
3702 3837 9.581289 TTGGAACCAAAATTTCTCATTAGACTA 57.419 29.630 3.62 0.00 32.44 2.59
3703 3838 8.477419 TTGGAACCAAAATTTCTCATTAGACT 57.523 30.769 3.62 0.00 32.44 3.24
3704 3839 9.541143 TTTTGGAACCAAAATTTCTCATTAGAC 57.459 29.630 22.61 0.00 46.80 2.59
3732 3867 3.542648 CATGATCATTGAGCACTGGTCT 58.457 45.455 6.78 0.00 28.34 3.85
3734 3869 2.022195 GCATGATCATTGAGCACTGGT 58.978 47.619 6.78 0.00 28.34 4.00
3735 3870 2.021457 TGCATGATCATTGAGCACTGG 58.979 47.619 13.56 1.52 28.34 4.00
3753 3888 1.734137 CTCCTGCAGCCATGATTGC 59.266 57.895 8.66 12.70 40.67 3.56
3769 3904 2.604046 ATGTCGTCCAATACCTGCTC 57.396 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.