Multiple sequence alignment - TraesCS6A01G024400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G024400 chr6A 100.000 3609 0 0 1 3609 12130807 12134415 0.000000e+00 6665.0
1 TraesCS6A01G024400 chr6A 96.364 110 4 0 3496 3605 12134192 12134301 7.960000e-42 182.0
2 TraesCS6A01G024400 chr6A 96.364 110 4 0 3386 3495 12134302 12134411 7.960000e-42 182.0
3 TraesCS6A01G024400 chr6A 90.000 40 4 0 3374 3413 422266070 422266109 7.000000e-03 52.8
4 TraesCS6A01G024400 chr6D 93.343 1983 103 14 947 2906 10640520 10642496 0.000000e+00 2904.0
5 TraesCS6A01G024400 chr6D 92.661 327 19 4 3063 3385 10665601 10665926 1.960000e-127 466.0
6 TraesCS6A01G024400 chr6D 94.444 126 7 0 2939 3064 10665422 10665547 1.020000e-45 195.0
7 TraesCS6A01G024400 chr6D 88.235 51 2 3 3494 3541 205822404 205822453 1.400000e-04 58.4
8 TraesCS6A01G024400 chrUn 93.384 1587 85 9 968 2540 237782611 237784191 0.000000e+00 2331.0
9 TraesCS6A01G024400 chrUn 89.091 605 43 12 2 587 70551137 70550537 0.000000e+00 730.0
10 TraesCS6A01G024400 chrUn 87.629 485 46 7 2576 3060 237784194 237784664 5.270000e-153 551.0
11 TraesCS6A01G024400 chrUn 91.892 148 8 3 639 782 63609902 63609755 1.700000e-48 204.0
12 TraesCS6A01G024400 chrUn 89.744 78 8 0 3101 3178 237784777 237784854 2.290000e-17 100.0
13 TraesCS6A01G024400 chrUn 100.000 37 0 0 780 816 320124 320088 6.470000e-08 69.4
14 TraesCS6A01G024400 chrUn 100.000 37 0 0 780 816 33019151 33019115 6.470000e-08 69.4
15 TraesCS6A01G024400 chrUn 100.000 37 0 0 780 816 221302765 221302801 6.470000e-08 69.4
16 TraesCS6A01G024400 chrUn 100.000 37 0 0 780 816 245443178 245443214 6.470000e-08 69.4
17 TraesCS6A01G024400 chrUn 100.000 37 0 0 780 816 245455527 245455563 6.470000e-08 69.4
18 TraesCS6A01G024400 chrUn 100.000 37 0 0 780 816 265816519 265816555 6.470000e-08 69.4
19 TraesCS6A01G024400 chr6B 93.384 1587 85 9 968 2540 19922051 19923631 0.000000e+00 2331.0
20 TraesCS6A01G024400 chr6B 87.629 485 46 7 2576 3060 19923634 19924104 5.270000e-153 551.0
21 TraesCS6A01G024400 chr6B 76.446 968 177 38 1474 2426 573414628 573413697 9.070000e-131 477.0
22 TraesCS6A01G024400 chr6B 92.568 148 7 3 639 782 145171992 145171845 3.650000e-50 209.0
23 TraesCS6A01G024400 chr6B 92.517 147 7 3 639 782 124390330 124390475 1.310000e-49 207.0
24 TraesCS6A01G024400 chr6B 89.744 78 8 0 3101 3178 19924217 19924294 2.290000e-17 100.0
25 TraesCS6A01G024400 chr6B 91.837 49 4 0 3385 3433 478470799 478470847 6.470000e-08 69.4
26 TraesCS6A01G024400 chr6B 89.583 48 5 0 3384 3431 1163022 1162975 1.080000e-05 62.1
27 TraesCS6A01G024400 chr6B 87.500 48 6 0 3496 3543 478470800 478470847 5.030000e-04 56.5
28 TraesCS6A01G024400 chr2B 88.854 942 98 6 1235 2173 142928562 142927625 0.000000e+00 1151.0
29 TraesCS6A01G024400 chr2B 84.868 456 40 8 2205 2660 142927032 142926606 1.990000e-117 433.0
30 TraesCS6A01G024400 chr2B 92.063 252 19 1 1439 1690 142931227 142930977 1.590000e-93 353.0
31 TraesCS6A01G024400 chr2B 84.821 224 24 6 1014 1237 142930846 142930633 2.180000e-52 217.0
32 TraesCS6A01G024400 chr2A 84.675 1031 155 3 1108 2135 5789059 5788029 0.000000e+00 1026.0
33 TraesCS6A01G024400 chr2A 86.700 594 64 10 2 581 696281740 696282332 0.000000e+00 645.0
34 TraesCS6A01G024400 chr2A 86.783 401 53 0 2136 2536 5787983 5787583 7.110000e-122 448.0
35 TraesCS6A01G024400 chr2A 92.715 151 6 4 639 784 60002318 60002468 2.820000e-51 213.0
36 TraesCS6A01G024400 chr2A 89.474 114 12 0 841 954 51221174 51221061 1.040000e-30 145.0
37 TraesCS6A01G024400 chr2A 100.000 38 0 0 779 816 32329448 32329485 1.800000e-08 71.3
38 TraesCS6A01G024400 chr3D 91.216 592 36 5 2 582 9075143 9074557 0.000000e+00 791.0
39 TraesCS6A01G024400 chr7D 91.050 581 50 2 2 581 426248596 426249175 0.000000e+00 784.0
40 TraesCS6A01G024400 chr7D 80.781 333 55 8 2147 2473 167077455 167077126 5.980000e-63 252.0
41 TraesCS6A01G024400 chr7D 88.119 202 13 3 392 582 220506650 220506851 2.800000e-56 230.0
42 TraesCS6A01G024400 chr7D 74.473 427 86 19 1992 2411 451186844 451186434 2.880000e-36 163.0
43 TraesCS6A01G024400 chr7D 90.265 113 9 2 841 952 417934614 417934503 2.900000e-31 147.0
44 TraesCS6A01G024400 chr7D 90.090 111 11 0 843 953 156018516 156018626 1.040000e-30 145.0
45 TraesCS6A01G024400 chr1D 88.744 613 40 17 2 587 478500823 478501433 0.000000e+00 723.0
46 TraesCS6A01G024400 chr1D 74.737 475 105 12 1940 2411 477189984 477190446 7.900000e-47 198.0
47 TraesCS6A01G024400 chr4D 89.130 598 33 8 2 587 481007487 481008064 0.000000e+00 715.0
48 TraesCS6A01G024400 chr4D 88.214 560 55 8 2 552 295011884 295011327 0.000000e+00 658.0
49 TraesCS6A01G024400 chr4D 89.908 109 11 0 843 951 469327460 469327352 1.350000e-29 141.0
50 TraesCS6A01G024400 chr3B 87.231 603 58 10 2 587 465070852 465071452 0.000000e+00 669.0
51 TraesCS6A01G024400 chr3B 89.641 502 42 5 2 495 697075554 697075055 6.580000e-177 630.0
52 TraesCS6A01G024400 chr3B 91.333 150 10 3 635 782 254842122 254841974 6.110000e-48 202.0
53 TraesCS6A01G024400 chr5D 93.049 446 28 3 2 446 408346640 408347083 0.000000e+00 649.0
54 TraesCS6A01G024400 chr5D 88.889 54 3 3 3379 3431 502174377 502174428 3.010000e-06 63.9
55 TraesCS6A01G024400 chr4B 85.593 590 79 4 3 587 13182710 13183298 6.620000e-172 614.0
56 TraesCS6A01G024400 chr4B 90.909 44 1 3 3480 3523 332564796 332564756 5.030000e-04 56.5
57 TraesCS6A01G024400 chr1A 75.826 1059 210 37 1384 2428 559707704 559706678 2.500000e-136 496.0
58 TraesCS6A01G024400 chr1A 74.580 476 104 14 1940 2411 573243376 573243838 3.680000e-45 193.0
59 TraesCS6A01G024400 chr1A 90.826 109 10 0 843 951 503830479 503830371 2.900000e-31 147.0
60 TraesCS6A01G024400 chr1A 97.674 43 1 0 3382 3424 569662101 569662143 1.390000e-09 75.0
61 TraesCS6A01G024400 chr1A 94.872 39 1 1 3496 3533 569662105 569662143 3.890000e-05 60.2
62 TraesCS6A01G024400 chr2D 88.728 346 25 3 250 583 577626255 577626598 9.330000e-111 411.0
63 TraesCS6A01G024400 chr2D 92.466 146 7 3 629 771 591105582 591105726 4.720000e-49 206.0
64 TraesCS6A01G024400 chr7B 80.781 333 55 8 2147 2473 131178046 131177717 5.980000e-63 252.0
65 TraesCS6A01G024400 chr7B 74.353 464 100 15 1953 2411 470836049 470835600 2.860000e-41 180.0
66 TraesCS6A01G024400 chr7B 100.000 31 0 0 3383 3413 382730217 382730247 1.400000e-04 58.4
67 TraesCS6A01G024400 chr7B 82.540 63 8 3 3384 3444 708505399 708505338 7.000000e-03 52.8
68 TraesCS6A01G024400 chr7A 80.480 333 56 8 2147 2473 168459933 168459604 2.780000e-61 246.0
69 TraesCS6A01G024400 chr7A 75.269 465 94 17 1953 2411 545935289 545935738 6.110000e-48 202.0
70 TraesCS6A01G024400 chr7A 90.909 110 10 0 843 952 459619256 459619365 8.070000e-32 148.0
71 TraesCS6A01G024400 chr7A 88.596 114 13 0 843 956 562866389 562866502 4.860000e-29 139.0
72 TraesCS6A01G024400 chr3A 91.558 154 9 3 634 783 700911092 700911245 3.650000e-50 209.0
73 TraesCS6A01G024400 chr3A 98.182 110 2 0 3386 3495 714614277 714614168 3.680000e-45 193.0
74 TraesCS6A01G024400 chr3A 94.828 116 6 0 3494 3609 714614279 714614164 7.960000e-42 182.0
75 TraesCS6A01G024400 chr3A 87.931 116 14 0 843 958 401021737 401021622 1.750000e-28 137.0
76 TraesCS6A01G024400 chr3A 95.238 42 2 0 2771 2812 21294988 21295029 2.330000e-07 67.6
77 TraesCS6A01G024400 chr4A 90.506 158 12 2 628 782 89724568 89724725 4.720000e-49 206.0
78 TraesCS6A01G024400 chr4A 91.892 148 8 3 639 782 185383523 185383670 1.700000e-48 204.0
79 TraesCS6A01G024400 chr4A 100.000 39 0 0 778 816 294280550 294280512 5.000000e-09 73.1
80 TraesCS6A01G024400 chr4A 82.353 68 9 3 3383 3448 606636506 606636440 5.030000e-04 56.5
81 TraesCS6A01G024400 chr4A 82.353 68 9 3 3383 3448 606640365 606640299 5.030000e-04 56.5
82 TraesCS6A01G024400 chr5A 100.000 106 0 0 3390 3495 464186961 464186856 2.840000e-46 196.0
83 TraesCS6A01G024400 chr5A 96.364 110 4 0 3500 3609 464186961 464186852 7.960000e-42 182.0
84 TraesCS6A01G024400 chr5A 91.837 49 4 0 3383 3431 607949335 607949383 6.470000e-08 69.4
85 TraesCS6A01G024400 chr5B 89.189 111 12 0 841 951 518036370 518036480 4.860000e-29 139.0
86 TraesCS6A01G024400 chr5B 100.000 39 0 0 780 818 458866759 458866797 5.000000e-09 73.1
87 TraesCS6A01G024400 chr5B 97.059 34 1 0 2785 2818 662568337 662568304 1.400000e-04 58.4
88 TraesCS6A01G024400 chr1B 89.130 46 2 3 3479 3523 55975978 55975935 2.000000e-03 54.7
89 TraesCS6A01G024400 chr1B 94.444 36 1 1 3488 3523 55997543 55997509 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G024400 chr6A 12130807 12134415 3608 False 2343.0 6665 97.576000 1 3609 3 chr6A.!!$F2 3608
1 TraesCS6A01G024400 chr6D 10640520 10642496 1976 False 2904.0 2904 93.343000 947 2906 1 chr6D.!!$F1 1959
2 TraesCS6A01G024400 chr6D 10665422 10665926 504 False 330.5 466 93.552500 2939 3385 2 chr6D.!!$F3 446
3 TraesCS6A01G024400 chrUn 237782611 237784854 2243 False 994.0 2331 90.252333 968 3178 3 chrUn.!!$F5 2210
4 TraesCS6A01G024400 chrUn 70550537 70551137 600 True 730.0 730 89.091000 2 587 1 chrUn.!!$R4 585
5 TraesCS6A01G024400 chr6B 19922051 19924294 2243 False 994.0 2331 90.252333 968 3178 3 chr6B.!!$F2 2210
6 TraesCS6A01G024400 chr6B 573413697 573414628 931 True 477.0 477 76.446000 1474 2426 1 chr6B.!!$R3 952
7 TraesCS6A01G024400 chr2B 142926606 142931227 4621 True 538.5 1151 87.651500 1014 2660 4 chr2B.!!$R1 1646
8 TraesCS6A01G024400 chr2A 5787583 5789059 1476 True 737.0 1026 85.729000 1108 2536 2 chr2A.!!$R2 1428
9 TraesCS6A01G024400 chr2A 696281740 696282332 592 False 645.0 645 86.700000 2 581 1 chr2A.!!$F3 579
10 TraesCS6A01G024400 chr3D 9074557 9075143 586 True 791.0 791 91.216000 2 582 1 chr3D.!!$R1 580
11 TraesCS6A01G024400 chr7D 426248596 426249175 579 False 784.0 784 91.050000 2 581 1 chr7D.!!$F3 579
12 TraesCS6A01G024400 chr1D 478500823 478501433 610 False 723.0 723 88.744000 2 587 1 chr1D.!!$F2 585
13 TraesCS6A01G024400 chr4D 481007487 481008064 577 False 715.0 715 89.130000 2 587 1 chr4D.!!$F1 585
14 TraesCS6A01G024400 chr4D 295011327 295011884 557 True 658.0 658 88.214000 2 552 1 chr4D.!!$R1 550
15 TraesCS6A01G024400 chr3B 465070852 465071452 600 False 669.0 669 87.231000 2 587 1 chr3B.!!$F1 585
16 TraesCS6A01G024400 chr4B 13182710 13183298 588 False 614.0 614 85.593000 3 587 1 chr4B.!!$F1 584
17 TraesCS6A01G024400 chr1A 559706678 559707704 1026 True 496.0 496 75.826000 1384 2428 1 chr1A.!!$R2 1044

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 869 0.107752 CAAGGCTCTCTGGAAGGCTC 60.108 60.0 0.0 0.0 37.48 4.70 F
1168 1230 0.037326 TCCTCAAAGCTACACGGCTG 60.037 55.0 0.0 0.0 42.24 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2541 5298 2.014335 ACCCCTGTACGTTTTATCGC 57.986 50.000 0.0 0.0 0.0 4.58 R
2727 5489 2.628178 ACTGCAAGGTAAAAAGGAAGCC 59.372 45.455 0.0 0.0 39.3 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 3.833645 CGGCCATCGAGGAACCGA 61.834 66.667 21.78 0.00 43.39 4.69
221 222 4.864334 CCCCCATCTGCACTCGCC 62.864 72.222 0.00 0.00 37.32 5.54
410 415 2.765807 CCATCGCCCCCTGAGACT 60.766 66.667 0.00 0.00 0.00 3.24
590 635 3.321445 GGTTCCCCCTAGTCCTGC 58.679 66.667 0.00 0.00 0.00 4.85
591 636 2.376165 GGTTCCCCCTAGTCCTGCC 61.376 68.421 0.00 0.00 0.00 4.85
592 637 1.307084 GTTCCCCCTAGTCCTGCCT 60.307 63.158 0.00 0.00 0.00 4.75
593 638 0.914902 GTTCCCCCTAGTCCTGCCTT 60.915 60.000 0.00 0.00 0.00 4.35
594 639 0.620700 TTCCCCCTAGTCCTGCCTTC 60.621 60.000 0.00 0.00 0.00 3.46
595 640 2.435693 CCCCCTAGTCCTGCCTTCG 61.436 68.421 0.00 0.00 0.00 3.79
596 641 2.501610 CCCTAGTCCTGCCTTCGC 59.498 66.667 0.00 0.00 0.00 4.70
597 642 2.501610 CCTAGTCCTGCCTTCGCC 59.498 66.667 0.00 0.00 0.00 5.54
598 643 2.060980 CCTAGTCCTGCCTTCGCCT 61.061 63.158 0.00 0.00 0.00 5.52
599 644 1.617947 CCTAGTCCTGCCTTCGCCTT 61.618 60.000 0.00 0.00 0.00 4.35
600 645 0.250513 CTAGTCCTGCCTTCGCCTTT 59.749 55.000 0.00 0.00 0.00 3.11
601 646 0.249398 TAGTCCTGCCTTCGCCTTTC 59.751 55.000 0.00 0.00 0.00 2.62
602 647 1.003233 GTCCTGCCTTCGCCTTTCT 60.003 57.895 0.00 0.00 0.00 2.52
603 648 0.606673 GTCCTGCCTTCGCCTTTCTT 60.607 55.000 0.00 0.00 0.00 2.52
604 649 0.321653 TCCTGCCTTCGCCTTTCTTC 60.322 55.000 0.00 0.00 0.00 2.87
605 650 0.322008 CCTGCCTTCGCCTTTCTTCT 60.322 55.000 0.00 0.00 0.00 2.85
606 651 0.801251 CTGCCTTCGCCTTTCTTCTG 59.199 55.000 0.00 0.00 0.00 3.02
607 652 0.108585 TGCCTTCGCCTTTCTTCTGT 59.891 50.000 0.00 0.00 0.00 3.41
608 653 0.519077 GCCTTCGCCTTTCTTCTGTG 59.481 55.000 0.00 0.00 0.00 3.66
609 654 1.878102 GCCTTCGCCTTTCTTCTGTGA 60.878 52.381 0.00 0.00 0.00 3.58
610 655 2.072298 CCTTCGCCTTTCTTCTGTGAG 58.928 52.381 0.00 0.00 0.00 3.51
611 656 2.072298 CTTCGCCTTTCTTCTGTGAGG 58.928 52.381 0.00 0.00 0.00 3.86
612 657 1.048601 TCGCCTTTCTTCTGTGAGGT 58.951 50.000 0.00 0.00 0.00 3.85
613 658 1.000955 TCGCCTTTCTTCTGTGAGGTC 59.999 52.381 0.00 0.00 0.00 3.85
614 659 1.001406 CGCCTTTCTTCTGTGAGGTCT 59.999 52.381 0.00 0.00 0.00 3.85
615 660 2.694213 GCCTTTCTTCTGTGAGGTCTC 58.306 52.381 0.00 0.00 0.00 3.36
616 661 2.614229 GCCTTTCTTCTGTGAGGTCTCC 60.614 54.545 0.00 0.00 0.00 3.71
617 662 2.903135 CCTTTCTTCTGTGAGGTCTCCT 59.097 50.000 0.00 0.00 36.03 3.69
626 671 2.255430 GAGGTCTCCTCGACGTTGT 58.745 57.895 1.96 0.00 41.08 3.32
627 672 0.109689 GAGGTCTCCTCGACGTTGTG 60.110 60.000 1.96 0.00 41.08 3.33
628 673 1.733399 GGTCTCCTCGACGTTGTGC 60.733 63.158 1.96 0.00 43.79 4.57
642 687 4.591532 CGTTGTGCGTGTCTTTTAAATG 57.408 40.909 0.00 0.00 35.54 2.32
643 688 3.420576 CGTTGTGCGTGTCTTTTAAATGG 59.579 43.478 1.63 0.00 35.54 3.16
644 689 3.634568 TGTGCGTGTCTTTTAAATGGG 57.365 42.857 1.63 0.00 0.00 4.00
645 690 2.294791 TGTGCGTGTCTTTTAAATGGGG 59.705 45.455 1.63 0.00 0.00 4.96
646 691 1.889829 TGCGTGTCTTTTAAATGGGGG 59.110 47.619 1.63 0.00 0.00 5.40
665 710 1.460504 GGAATTTCACTTCCCCGACC 58.539 55.000 0.00 0.00 39.06 4.79
666 711 1.004394 GGAATTTCACTTCCCCGACCT 59.996 52.381 0.00 0.00 39.06 3.85
667 712 2.357075 GAATTTCACTTCCCCGACCTC 58.643 52.381 0.00 0.00 0.00 3.85
668 713 1.657804 ATTTCACTTCCCCGACCTCT 58.342 50.000 0.00 0.00 0.00 3.69
669 714 0.685097 TTTCACTTCCCCGACCTCTG 59.315 55.000 0.00 0.00 0.00 3.35
670 715 1.827399 TTCACTTCCCCGACCTCTGC 61.827 60.000 0.00 0.00 0.00 4.26
671 716 2.203788 ACTTCCCCGACCTCTGCA 60.204 61.111 0.00 0.00 0.00 4.41
672 717 2.266055 CTTCCCCGACCTCTGCAC 59.734 66.667 0.00 0.00 0.00 4.57
673 718 3.316573 CTTCCCCGACCTCTGCACC 62.317 68.421 0.00 0.00 0.00 5.01
674 719 4.631740 TCCCCGACCTCTGCACCA 62.632 66.667 0.00 0.00 0.00 4.17
675 720 3.636231 CCCCGACCTCTGCACCAA 61.636 66.667 0.00 0.00 0.00 3.67
676 721 2.358737 CCCGACCTCTGCACCAAC 60.359 66.667 0.00 0.00 0.00 3.77
677 722 2.743718 CCGACCTCTGCACCAACT 59.256 61.111 0.00 0.00 0.00 3.16
678 723 1.541310 CCCGACCTCTGCACCAACTA 61.541 60.000 0.00 0.00 0.00 2.24
679 724 0.108615 CCGACCTCTGCACCAACTAG 60.109 60.000 0.00 0.00 0.00 2.57
680 725 0.888619 CGACCTCTGCACCAACTAGA 59.111 55.000 0.00 0.00 0.00 2.43
681 726 1.478510 CGACCTCTGCACCAACTAGAT 59.521 52.381 0.00 0.00 0.00 1.98
682 727 2.736719 CGACCTCTGCACCAACTAGATG 60.737 54.545 0.00 0.00 0.00 2.90
683 728 1.065854 ACCTCTGCACCAACTAGATGC 60.066 52.381 0.00 1.35 39.88 3.91
684 729 1.065926 CCTCTGCACCAACTAGATGCA 60.066 52.381 12.67 12.67 46.73 3.96
688 733 2.549926 TGCACCAACTAGATGCATACG 58.450 47.619 0.00 0.00 44.17 3.06
689 734 1.867233 GCACCAACTAGATGCATACGG 59.133 52.381 0.00 0.00 39.23 4.02
690 735 1.867233 CACCAACTAGATGCATACGGC 59.133 52.381 0.00 0.00 45.13 5.68
691 736 1.762957 ACCAACTAGATGCATACGGCT 59.237 47.619 0.00 0.00 45.15 5.52
692 737 2.963101 ACCAACTAGATGCATACGGCTA 59.037 45.455 0.00 0.00 45.15 3.93
693 738 3.578716 ACCAACTAGATGCATACGGCTAT 59.421 43.478 0.00 0.00 45.15 2.97
694 739 4.040461 ACCAACTAGATGCATACGGCTATT 59.960 41.667 0.00 0.00 45.15 1.73
695 740 4.997395 CCAACTAGATGCATACGGCTATTT 59.003 41.667 0.00 0.00 45.15 1.40
696 741 5.470098 CCAACTAGATGCATACGGCTATTTT 59.530 40.000 0.00 0.00 45.15 1.82
697 742 6.649141 CCAACTAGATGCATACGGCTATTTTA 59.351 38.462 0.00 0.00 45.15 1.52
698 743 7.148573 CCAACTAGATGCATACGGCTATTTTAG 60.149 40.741 0.00 0.00 45.15 1.85
699 744 6.994221 ACTAGATGCATACGGCTATTTTAGT 58.006 36.000 0.00 0.00 45.15 2.24
700 745 8.118976 ACTAGATGCATACGGCTATTTTAGTA 57.881 34.615 0.00 0.00 45.15 1.82
701 746 8.750298 ACTAGATGCATACGGCTATTTTAGTAT 58.250 33.333 0.00 0.00 45.15 2.12
702 747 7.834068 AGATGCATACGGCTATTTTAGTATG 57.166 36.000 0.00 9.35 45.34 2.39
703 748 7.611770 AGATGCATACGGCTATTTTAGTATGA 58.388 34.615 15.84 4.60 45.38 2.15
704 749 7.761704 AGATGCATACGGCTATTTTAGTATGAG 59.238 37.037 15.84 0.00 45.38 2.90
705 750 6.755206 TGCATACGGCTATTTTAGTATGAGT 58.245 36.000 15.84 0.00 45.38 3.41
706 751 7.888424 TGCATACGGCTATTTTAGTATGAGTA 58.112 34.615 15.84 2.09 45.38 2.59
707 752 7.811236 TGCATACGGCTATTTTAGTATGAGTAC 59.189 37.037 15.84 0.00 45.38 2.73
708 753 7.275123 GCATACGGCTATTTTAGTATGAGTACC 59.725 40.741 15.84 0.00 45.38 3.34
709 754 6.720112 ACGGCTATTTTAGTATGAGTACCA 57.280 37.500 0.00 0.00 0.00 3.25
710 755 7.116075 ACGGCTATTTTAGTATGAGTACCAA 57.884 36.000 0.00 0.00 0.00 3.67
711 756 7.208080 ACGGCTATTTTAGTATGAGTACCAAG 58.792 38.462 0.00 0.00 0.00 3.61
712 757 7.069085 ACGGCTATTTTAGTATGAGTACCAAGA 59.931 37.037 0.00 0.00 0.00 3.02
713 758 8.088981 CGGCTATTTTAGTATGAGTACCAAGAT 58.911 37.037 0.00 0.00 0.00 2.40
724 769 9.654663 GTATGAGTACCAAGATAAATATGGTCC 57.345 37.037 0.00 0.00 43.90 4.46
725 770 7.931015 TGAGTACCAAGATAAATATGGTCCT 57.069 36.000 0.00 0.00 43.90 3.85
726 771 7.963532 TGAGTACCAAGATAAATATGGTCCTC 58.036 38.462 9.13 9.13 43.90 3.71
727 772 7.931015 AGTACCAAGATAAATATGGTCCTCA 57.069 36.000 0.00 0.00 43.90 3.86
728 773 8.511748 AGTACCAAGATAAATATGGTCCTCAT 57.488 34.615 0.00 0.00 43.90 2.90
729 774 9.615660 AGTACCAAGATAAATATGGTCCTCATA 57.384 33.333 0.00 0.00 43.90 2.15
784 829 5.940192 TGAGTGGTTTCATCATACACAAC 57.060 39.130 0.00 0.00 34.65 3.32
785 830 4.759693 TGAGTGGTTTCATCATACACAACC 59.240 41.667 0.00 0.00 37.92 3.77
786 831 3.751175 AGTGGTTTCATCATACACAACCG 59.249 43.478 0.00 0.00 39.94 4.44
787 832 2.486203 TGGTTTCATCATACACAACCGC 59.514 45.455 0.00 0.00 39.94 5.68
788 833 2.486203 GGTTTCATCATACACAACCGCA 59.514 45.455 0.00 0.00 0.00 5.69
789 834 3.128589 GGTTTCATCATACACAACCGCAT 59.871 43.478 0.00 0.00 0.00 4.73
790 835 4.097714 GTTTCATCATACACAACCGCATG 58.902 43.478 0.00 0.00 0.00 4.06
791 836 1.670295 TCATCATACACAACCGCATGC 59.330 47.619 7.91 7.91 0.00 4.06
792 837 1.024271 ATCATACACAACCGCATGCC 58.976 50.000 13.15 0.00 0.00 4.40
793 838 1.029408 TCATACACAACCGCATGCCC 61.029 55.000 13.15 0.00 0.00 5.36
794 839 1.001517 ATACACAACCGCATGCCCA 60.002 52.632 13.15 0.00 0.00 5.36
795 840 0.610509 ATACACAACCGCATGCCCAA 60.611 50.000 13.15 0.00 0.00 4.12
796 841 1.519751 TACACAACCGCATGCCCAAC 61.520 55.000 13.15 0.00 0.00 3.77
797 842 3.302344 ACAACCGCATGCCCAACC 61.302 61.111 13.15 0.00 0.00 3.77
798 843 3.301554 CAACCGCATGCCCAACCA 61.302 61.111 13.15 0.00 0.00 3.67
799 844 3.302344 AACCGCATGCCCAACCAC 61.302 61.111 13.15 0.00 0.00 4.16
800 845 3.808218 AACCGCATGCCCAACCACT 62.808 57.895 13.15 0.00 0.00 4.00
801 846 3.751246 CCGCATGCCCAACCACTG 61.751 66.667 13.15 0.00 0.00 3.66
802 847 2.672651 CGCATGCCCAACCACTGA 60.673 61.111 13.15 0.00 0.00 3.41
803 848 2.693762 CGCATGCCCAACCACTGAG 61.694 63.158 13.15 0.00 0.00 3.35
804 849 2.998279 GCATGCCCAACCACTGAGC 61.998 63.158 6.36 0.00 0.00 4.26
805 850 2.036256 ATGCCCAACCACTGAGCC 59.964 61.111 0.00 0.00 0.00 4.70
806 851 2.844195 ATGCCCAACCACTGAGCCA 61.844 57.895 0.00 0.00 0.00 4.75
807 852 2.203480 GCCCAACCACTGAGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
808 853 2.270986 GCCCAACCACTGAGCCAAG 61.271 63.158 0.00 0.00 0.00 3.61
809 854 1.604593 CCCAACCACTGAGCCAAGG 60.605 63.158 0.00 0.00 0.00 3.61
810 855 2.270986 CCAACCACTGAGCCAAGGC 61.271 63.158 2.02 2.02 42.33 4.35
820 865 4.633769 GCCAAGGCTCTCTGGAAG 57.366 61.111 7.90 0.00 38.26 3.46
821 866 1.077858 GCCAAGGCTCTCTGGAAGG 60.078 63.158 7.90 0.00 38.26 3.46
822 867 1.077858 CCAAGGCTCTCTGGAAGGC 60.078 63.158 0.00 0.00 0.00 4.35
823 868 1.560866 CCAAGGCTCTCTGGAAGGCT 61.561 60.000 0.00 0.00 40.25 4.58
824 869 0.107752 CAAGGCTCTCTGGAAGGCTC 60.108 60.000 0.00 0.00 37.48 4.70
825 870 1.271127 AAGGCTCTCTGGAAGGCTCC 61.271 60.000 0.00 0.00 42.81 4.70
826 871 1.688884 GGCTCTCTGGAAGGCTCCT 60.689 63.158 0.00 0.00 42.94 3.69
827 872 0.397816 GGCTCTCTGGAAGGCTCCTA 60.398 60.000 0.00 0.00 42.94 2.94
828 873 1.039856 GCTCTCTGGAAGGCTCCTAG 58.960 60.000 0.00 0.00 42.94 3.02
829 874 1.703411 CTCTCTGGAAGGCTCCTAGG 58.297 60.000 0.82 0.82 42.94 3.02
830 875 1.011595 TCTCTGGAAGGCTCCTAGGT 58.988 55.000 9.08 0.00 42.94 3.08
831 876 1.362932 TCTCTGGAAGGCTCCTAGGTT 59.637 52.381 9.08 0.00 42.94 3.50
832 877 1.484240 CTCTGGAAGGCTCCTAGGTTG 59.516 57.143 9.08 4.42 42.94 3.77
833 878 1.078823 TCTGGAAGGCTCCTAGGTTGA 59.921 52.381 9.08 0.00 42.94 3.18
834 879 1.208293 CTGGAAGGCTCCTAGGTTGAC 59.792 57.143 9.08 5.45 42.94 3.18
835 880 1.276622 GGAAGGCTCCTAGGTTGACA 58.723 55.000 9.08 0.00 38.88 3.58
836 881 1.628846 GGAAGGCTCCTAGGTTGACAA 59.371 52.381 9.08 0.00 38.88 3.18
837 882 2.615747 GGAAGGCTCCTAGGTTGACAAC 60.616 54.545 9.08 9.97 38.88 3.32
838 883 2.031495 AGGCTCCTAGGTTGACAACT 57.969 50.000 17.52 6.86 0.00 3.16
839 884 3.185880 AGGCTCCTAGGTTGACAACTA 57.814 47.619 17.52 7.58 0.00 2.24
840 885 3.725634 AGGCTCCTAGGTTGACAACTAT 58.274 45.455 17.52 9.55 0.00 2.12
841 886 4.104831 AGGCTCCTAGGTTGACAACTATT 58.895 43.478 17.52 6.96 0.00 1.73
842 887 4.162509 AGGCTCCTAGGTTGACAACTATTC 59.837 45.833 17.52 1.49 0.00 1.75
843 888 4.081087 GGCTCCTAGGTTGACAACTATTCA 60.081 45.833 17.52 0.00 0.00 2.57
844 889 5.488341 GCTCCTAGGTTGACAACTATTCAA 58.512 41.667 17.52 0.00 0.00 2.69
845 890 6.116126 GCTCCTAGGTTGACAACTATTCAAT 58.884 40.000 17.52 0.00 35.47 2.57
846 891 6.037610 GCTCCTAGGTTGACAACTATTCAATG 59.962 42.308 17.52 4.00 35.47 2.82
847 892 7.252612 TCCTAGGTTGACAACTATTCAATGA 57.747 36.000 17.52 2.50 35.47 2.57
848 893 7.861629 TCCTAGGTTGACAACTATTCAATGAT 58.138 34.615 17.52 0.00 35.47 2.45
849 894 8.988060 TCCTAGGTTGACAACTATTCAATGATA 58.012 33.333 17.52 0.00 35.47 2.15
850 895 9.784531 CCTAGGTTGACAACTATTCAATGATAT 57.215 33.333 17.52 0.00 35.47 1.63
942 987 8.283992 CGTATTACGCTCTATATAGATGGAAGG 58.716 40.741 12.86 1.91 33.65 3.46
943 988 9.339850 GTATTACGCTCTATATAGATGGAAGGA 57.660 37.037 12.86 2.72 0.00 3.36
944 989 7.867305 TTACGCTCTATATAGATGGAAGGAG 57.133 40.000 12.86 5.03 0.00 3.69
945 990 5.197451 ACGCTCTATATAGATGGAAGGAGG 58.803 45.833 12.86 0.00 0.00 4.30
946 991 4.582656 CGCTCTATATAGATGGAAGGAGGG 59.417 50.000 12.86 3.93 0.00 4.30
947 992 5.632664 CGCTCTATATAGATGGAAGGAGGGA 60.633 48.000 12.86 0.00 35.51 4.20
948 993 5.833131 GCTCTATATAGATGGAAGGAGGGAG 59.167 48.000 12.86 0.00 0.00 4.30
949 994 6.582289 GCTCTATATAGATGGAAGGAGGGAGT 60.582 46.154 12.86 0.00 0.00 3.85
950 995 7.367004 GCTCTATATAGATGGAAGGAGGGAGTA 60.367 44.444 12.86 0.00 0.00 2.59
951 996 8.108378 TCTATATAGATGGAAGGAGGGAGTAG 57.892 42.308 8.44 0.00 0.00 2.57
952 997 6.744802 ATATAGATGGAAGGAGGGAGTAGT 57.255 41.667 0.00 0.00 0.00 2.73
992 1037 1.204941 AGGAGTATGACGGTTGCACTC 59.795 52.381 0.00 7.87 35.87 3.51
1007 1052 0.237235 CACTCGCTGCGCCTTTAAAA 59.763 50.000 18.65 0.00 0.00 1.52
1008 1053 0.237498 ACTCGCTGCGCCTTTAAAAC 59.763 50.000 18.65 0.00 0.00 2.43
1009 1054 0.454452 CTCGCTGCGCCTTTAAAACC 60.454 55.000 18.65 0.00 0.00 3.27
1010 1055 1.443702 CGCTGCGCCTTTAAAACCC 60.444 57.895 9.88 0.00 0.00 4.11
1011 1056 1.663173 GCTGCGCCTTTAAAACCCA 59.337 52.632 4.18 0.00 0.00 4.51
1012 1057 0.666274 GCTGCGCCTTTAAAACCCAC 60.666 55.000 4.18 0.00 0.00 4.61
1014 1059 1.290955 GCGCCTTTAAAACCCACCC 59.709 57.895 0.00 0.00 0.00 4.61
1015 1060 1.969085 CGCCTTTAAAACCCACCCC 59.031 57.895 0.00 0.00 0.00 4.95
1016 1061 0.541063 CGCCTTTAAAACCCACCCCT 60.541 55.000 0.00 0.00 0.00 4.79
1017 1062 1.724545 GCCTTTAAAACCCACCCCTT 58.275 50.000 0.00 0.00 0.00 3.95
1024 1078 2.650226 AAACCCACCCCTTGTTCCCG 62.650 60.000 0.00 0.00 0.00 5.14
1063 1122 2.508439 GCTCGATCGGTTGCGGAA 60.508 61.111 16.41 0.00 0.00 4.30
1106 1165 2.035530 ATCACCTCTTAGCAAGCAGC 57.964 50.000 0.00 0.00 46.19 5.25
1136 1195 2.361104 TTGCCGGCATGGTCCTTC 60.361 61.111 33.25 0.00 41.21 3.46
1168 1230 0.037326 TCCTCAAAGCTACACGGCTG 60.037 55.000 0.00 0.00 42.24 4.85
1169 1231 1.021390 CCTCAAAGCTACACGGCTGG 61.021 60.000 0.00 0.00 42.24 4.85
1215 1277 1.381056 TCCTCCTGCTCTCTCTGGC 60.381 63.158 0.00 0.00 0.00 4.85
1270 3405 3.475774 CGCGCCGTGTACCTTGTC 61.476 66.667 0.00 0.00 0.00 3.18
1322 3457 1.154197 GCGTTTCCCTAACTCCACAC 58.846 55.000 0.00 0.00 34.46 3.82
1338 3473 1.130561 CACACTCATCGAGTACGCTCA 59.869 52.381 0.00 0.00 41.37 4.26
1471 3606 2.014128 CCAGACAACAACTTGGTCGTT 58.986 47.619 0.00 0.00 0.00 3.85
1744 3882 3.282157 CACGGTGTTGCTGCTGCT 61.282 61.111 17.00 0.00 40.48 4.24
2043 4182 0.742281 CTCGAGGCCAACATCACAGG 60.742 60.000 5.01 0.00 0.00 4.00
2098 4249 2.629210 CGCTTCGTCGCCAACAAA 59.371 55.556 0.00 0.00 0.00 2.83
2335 5092 2.499685 GCGTACCTCGAGGCCAAT 59.500 61.111 31.56 14.52 42.86 3.16
2420 5177 2.202797 CCGTCTGGGAGTGCATCG 60.203 66.667 0.00 0.00 38.47 3.84
2541 5298 4.578516 TCCCATAATTGCAGTGTAAATCGG 59.421 41.667 0.00 0.00 0.00 4.18
2544 5301 1.732941 ATTGCAGTGTAAATCGGCGA 58.267 45.000 13.87 13.87 0.00 5.54
2558 5318 0.925466 CGGCGATAAAACGTACAGGG 59.075 55.000 0.00 0.00 35.59 4.45
2717 5479 9.030301 GTAATGTTCTTGTATTTTGTGCAAAGT 57.970 29.630 0.00 0.00 31.83 2.66
2723 5485 6.262049 TCTTGTATTTTGTGCAAAGTCTAGCA 59.738 34.615 0.00 0.00 38.65 3.49
2727 5489 6.774354 ATTTTGTGCAAAGTCTAGCATTTG 57.226 33.333 12.58 12.58 43.44 2.32
2908 5672 3.794270 GCGACTTGCAGCGGATAA 58.206 55.556 7.61 0.00 45.45 1.75
2910 5674 1.358725 GCGACTTGCAGCGGATAACA 61.359 55.000 7.61 0.00 45.45 2.41
2912 5676 1.735700 CGACTTGCAGCGGATAACAGA 60.736 52.381 0.00 0.00 0.00 3.41
2913 5677 2.555199 GACTTGCAGCGGATAACAGAT 58.445 47.619 0.00 0.00 0.00 2.90
2914 5678 2.541762 GACTTGCAGCGGATAACAGATC 59.458 50.000 0.00 0.00 0.00 2.75
2917 5681 2.554142 TGCAGCGGATAACAGATCTTG 58.446 47.619 0.00 0.00 0.00 3.02
2918 5682 2.093500 TGCAGCGGATAACAGATCTTGT 60.093 45.455 0.00 0.00 43.45 3.16
2919 5683 3.132111 TGCAGCGGATAACAGATCTTGTA 59.868 43.478 0.00 0.00 39.73 2.41
2920 5684 4.202253 TGCAGCGGATAACAGATCTTGTAT 60.202 41.667 0.00 0.00 39.73 2.29
2921 5685 4.387256 GCAGCGGATAACAGATCTTGTATC 59.613 45.833 11.63 11.63 39.73 2.24
2924 5688 5.122512 CGGATAACAGATCTTGTATCCGT 57.877 43.478 32.78 12.62 45.64 4.69
2925 5689 6.250344 CGGATAACAGATCTTGTATCCGTA 57.750 41.667 32.78 12.43 45.64 4.02
2927 5691 7.313646 CGGATAACAGATCTTGTATCCGTATT 58.686 38.462 32.78 7.94 45.64 1.89
2929 5693 8.524487 GGATAACAGATCTTGTATCCGTATTCT 58.476 37.037 19.10 0.00 39.73 2.40
2930 5694 9.562583 GATAACAGATCTTGTATCCGTATTCTC 57.437 37.037 9.82 0.00 39.73 2.87
2931 5695 6.003234 ACAGATCTTGTATCCGTATTCTCG 57.997 41.667 0.00 0.00 38.56 4.04
2932 5696 4.854291 CAGATCTTGTATCCGTATTCTCGC 59.146 45.833 0.00 0.00 0.00 5.03
2933 5697 4.519350 AGATCTTGTATCCGTATTCTCGCA 59.481 41.667 0.00 0.00 0.00 5.10
2934 5698 4.642445 TCTTGTATCCGTATTCTCGCAA 57.358 40.909 0.00 0.00 0.00 4.85
2935 5699 5.001237 TCTTGTATCCGTATTCTCGCAAA 57.999 39.130 0.00 0.00 0.00 3.68
2936 5700 5.412640 TCTTGTATCCGTATTCTCGCAAAA 58.587 37.500 0.00 0.00 0.00 2.44
2937 5701 5.870433 TCTTGTATCCGTATTCTCGCAAAAA 59.130 36.000 0.00 0.00 0.00 1.94
2983 5747 3.181479 GGTGGAGAAGTTTGGGTGAAAAC 60.181 47.826 0.00 0.00 39.80 2.43
3060 5824 3.009805 GCCCCAACTTCCCTCTAGTTTAA 59.990 47.826 0.00 0.00 33.73 1.52
3090 5909 1.153647 CGCCATCTTGTCGCTACCA 60.154 57.895 0.00 0.00 0.00 3.25
3097 5916 3.583276 TTGTCGCTACCACCCGCTG 62.583 63.158 0.00 0.00 0.00 5.18
3164 6000 4.561938 GCCCAAGGCCGTTATTTAGTTTTT 60.562 41.667 0.00 0.00 44.06 1.94
3203 6041 5.953571 ACACTAGATTTGGGGAAGAAGTTT 58.046 37.500 0.00 0.00 0.00 2.66
3207 6045 8.462016 CACTAGATTTGGGGAAGAAGTTTTATG 58.538 37.037 0.00 0.00 0.00 1.90
3218 6056 7.780271 GGGAAGAAGTTTTATGGGATCTAACAT 59.220 37.037 0.00 0.00 0.00 2.71
3275 6113 8.267894 ACTGTTGGAGTTGCTCTAATGTTATAT 58.732 33.333 0.00 0.00 33.81 0.86
3281 6119 8.307483 GGAGTTGCTCTAATGTTATATGCTAGA 58.693 37.037 0.00 0.00 0.00 2.43
3385 6225 6.992664 AGTCATCTAGTGCCAGAGAATAAT 57.007 37.500 0.00 0.00 0.00 1.28
3386 6226 6.991938 AGTCATCTAGTGCCAGAGAATAATC 58.008 40.000 0.00 0.00 0.00 1.75
3387 6227 6.782000 AGTCATCTAGTGCCAGAGAATAATCT 59.218 38.462 0.00 0.00 39.10 2.40
3388 6228 7.947332 AGTCATCTAGTGCCAGAGAATAATCTA 59.053 37.037 0.00 0.00 35.54 1.98
3389 6229 8.748412 GTCATCTAGTGCCAGAGAATAATCTAT 58.252 37.037 0.00 0.00 35.54 1.98
3390 6230 9.981460 TCATCTAGTGCCAGAGAATAATCTATA 57.019 33.333 0.00 0.00 35.54 1.31
3392 6232 9.989296 ATCTAGTGCCAGAGAATAATCTATACT 57.011 33.333 0.00 0.00 35.54 2.12
3428 6268 9.098355 AGAGCAAACATTTTCTTTCTTAAAACC 57.902 29.630 0.00 0.00 0.00 3.27
3429 6269 8.785329 AGCAAACATTTTCTTTCTTAAAACCA 57.215 26.923 0.00 0.00 0.00 3.67
3430 6270 8.664798 AGCAAACATTTTCTTTCTTAAAACCAC 58.335 29.630 0.00 0.00 0.00 4.16
3431 6271 7.908082 GCAAACATTTTCTTTCTTAAAACCACC 59.092 33.333 0.00 0.00 0.00 4.61
3432 6272 8.394877 CAAACATTTTCTTTCTTAAAACCACCC 58.605 33.333 0.00 0.00 0.00 4.61
3433 6273 6.277605 ACATTTTCTTTCTTAAAACCACCCG 58.722 36.000 0.00 0.00 0.00 5.28
3434 6274 5.918426 TTTTCTTTCTTAAAACCACCCGT 57.082 34.783 0.00 0.00 0.00 5.28
3435 6275 5.503662 TTTCTTTCTTAAAACCACCCGTC 57.496 39.130 0.00 0.00 0.00 4.79
3436 6276 4.153673 TCTTTCTTAAAACCACCCGTCA 57.846 40.909 0.00 0.00 0.00 4.35
3437 6277 4.525024 TCTTTCTTAAAACCACCCGTCAA 58.475 39.130 0.00 0.00 0.00 3.18
3438 6278 4.577283 TCTTTCTTAAAACCACCCGTCAAG 59.423 41.667 0.00 0.00 0.00 3.02
3439 6279 3.564053 TCTTAAAACCACCCGTCAAGT 57.436 42.857 0.00 0.00 0.00 3.16
3440 6280 3.207778 TCTTAAAACCACCCGTCAAGTG 58.792 45.455 0.00 0.00 34.91 3.16
3441 6281 2.713863 TAAAACCACCCGTCAAGTGT 57.286 45.000 0.00 0.00 33.20 3.55
3442 6282 2.713863 AAAACCACCCGTCAAGTGTA 57.286 45.000 0.00 0.00 33.20 2.90
3443 6283 1.957668 AAACCACCCGTCAAGTGTAC 58.042 50.000 0.00 0.00 33.20 2.90
3444 6284 0.107268 AACCACCCGTCAAGTGTACC 59.893 55.000 0.00 0.00 33.20 3.34
3445 6285 1.004200 CCACCCGTCAAGTGTACCC 60.004 63.158 0.00 0.00 33.20 3.69
3446 6286 1.749665 CACCCGTCAAGTGTACCCA 59.250 57.895 0.00 0.00 0.00 4.51
3447 6287 0.320421 CACCCGTCAAGTGTACCCAG 60.320 60.000 0.00 0.00 0.00 4.45
3448 6288 0.761702 ACCCGTCAAGTGTACCCAGT 60.762 55.000 0.00 0.00 0.00 4.00
3449 6289 0.037605 CCCGTCAAGTGTACCCAGTC 60.038 60.000 0.00 0.00 0.00 3.51
3450 6290 0.966920 CCGTCAAGTGTACCCAGTCT 59.033 55.000 0.00 0.00 0.00 3.24
3451 6291 1.336887 CCGTCAAGTGTACCCAGTCTG 60.337 57.143 0.00 0.00 0.00 3.51
3452 6292 1.611977 CGTCAAGTGTACCCAGTCTGA 59.388 52.381 0.00 0.00 0.00 3.27
3453 6293 2.231478 CGTCAAGTGTACCCAGTCTGAT 59.769 50.000 0.00 0.00 0.00 2.90
3454 6294 3.306088 CGTCAAGTGTACCCAGTCTGATT 60.306 47.826 0.00 0.00 0.00 2.57
3455 6295 4.082408 CGTCAAGTGTACCCAGTCTGATTA 60.082 45.833 0.00 0.00 0.00 1.75
3456 6296 5.169295 GTCAAGTGTACCCAGTCTGATTAC 58.831 45.833 0.00 2.90 0.00 1.89
3457 6297 5.047235 GTCAAGTGTACCCAGTCTGATTACT 60.047 44.000 0.00 0.00 0.00 2.24
3458 6298 6.152323 GTCAAGTGTACCCAGTCTGATTACTA 59.848 42.308 0.00 0.00 0.00 1.82
3459 6299 6.152323 TCAAGTGTACCCAGTCTGATTACTAC 59.848 42.308 0.00 4.11 0.00 2.73
3460 6300 4.954826 AGTGTACCCAGTCTGATTACTACC 59.045 45.833 0.00 0.00 0.00 3.18
3461 6301 3.949754 TGTACCCAGTCTGATTACTACCG 59.050 47.826 0.00 0.00 0.00 4.02
3462 6302 1.755380 ACCCAGTCTGATTACTACCGC 59.245 52.381 0.00 0.00 0.00 5.68
3463 6303 1.068741 CCCAGTCTGATTACTACCGCC 59.931 57.143 0.00 0.00 0.00 6.13
3464 6304 1.754803 CCAGTCTGATTACTACCGCCA 59.245 52.381 0.00 0.00 0.00 5.69
3465 6305 2.223829 CCAGTCTGATTACTACCGCCAG 60.224 54.545 0.00 0.00 0.00 4.85
3466 6306 2.688446 CAGTCTGATTACTACCGCCAGA 59.312 50.000 0.00 0.00 0.00 3.86
3467 6307 3.319405 CAGTCTGATTACTACCGCCAGAT 59.681 47.826 0.00 0.00 36.44 2.90
3468 6308 3.961408 AGTCTGATTACTACCGCCAGATT 59.039 43.478 0.00 0.00 36.44 2.40
3469 6309 5.009710 CAGTCTGATTACTACCGCCAGATTA 59.990 44.000 0.00 0.00 36.44 1.75
3470 6310 5.009811 AGTCTGATTACTACCGCCAGATTAC 59.990 44.000 0.00 0.00 36.44 1.89
3471 6311 4.280174 TCTGATTACTACCGCCAGATTACC 59.720 45.833 0.00 0.00 0.00 2.85
3472 6312 3.322828 TGATTACTACCGCCAGATTACCC 59.677 47.826 0.00 0.00 0.00 3.69
3473 6313 1.708341 TACTACCGCCAGATTACCCC 58.292 55.000 0.00 0.00 0.00 4.95
3474 6314 0.325860 ACTACCGCCAGATTACCCCA 60.326 55.000 0.00 0.00 0.00 4.96
3475 6315 1.056660 CTACCGCCAGATTACCCCAT 58.943 55.000 0.00 0.00 0.00 4.00
3476 6316 1.420138 CTACCGCCAGATTACCCCATT 59.580 52.381 0.00 0.00 0.00 3.16
3477 6317 0.629058 ACCGCCAGATTACCCCATTT 59.371 50.000 0.00 0.00 0.00 2.32
3478 6318 1.847737 ACCGCCAGATTACCCCATTTA 59.152 47.619 0.00 0.00 0.00 1.40
3479 6319 2.158667 ACCGCCAGATTACCCCATTTAG 60.159 50.000 0.00 0.00 0.00 1.85
3480 6320 2.158667 CCGCCAGATTACCCCATTTAGT 60.159 50.000 0.00 0.00 0.00 2.24
3481 6321 3.551846 CGCCAGATTACCCCATTTAGTT 58.448 45.455 0.00 0.00 0.00 2.24
3482 6322 4.445162 CCGCCAGATTACCCCATTTAGTTA 60.445 45.833 0.00 0.00 0.00 2.24
3483 6323 4.755123 CGCCAGATTACCCCATTTAGTTAG 59.245 45.833 0.00 0.00 0.00 2.34
3484 6324 4.519350 GCCAGATTACCCCATTTAGTTAGC 59.481 45.833 0.00 0.00 0.00 3.09
3485 6325 5.690364 GCCAGATTACCCCATTTAGTTAGCT 60.690 44.000 0.00 0.00 0.00 3.32
3486 6326 5.998363 CCAGATTACCCCATTTAGTTAGCTC 59.002 44.000 0.00 0.00 0.00 4.09
3487 6327 6.183361 CCAGATTACCCCATTTAGTTAGCTCT 60.183 42.308 0.00 0.00 0.00 4.09
3488 6328 7.016268 CCAGATTACCCCATTTAGTTAGCTCTA 59.984 40.741 0.00 0.00 0.00 2.43
3489 6329 8.429641 CAGATTACCCCATTTAGTTAGCTCTAA 58.570 37.037 0.00 0.00 0.00 2.10
3490 6330 9.172060 AGATTACCCCATTTAGTTAGCTCTAAT 57.828 33.333 0.00 0.00 31.28 1.73
3491 6331 9.220767 GATTACCCCATTTAGTTAGCTCTAATG 57.779 37.037 0.00 7.13 31.28 1.90
3492 6332 5.941788 ACCCCATTTAGTTAGCTCTAATGG 58.058 41.667 18.70 18.70 41.65 3.16
3493 6333 4.762251 CCCCATTTAGTTAGCTCTAATGGC 59.238 45.833 19.58 0.00 41.19 4.40
3494 6334 5.456763 CCCCATTTAGTTAGCTCTAATGGCT 60.457 44.000 19.58 0.00 41.19 4.75
3495 6335 6.064717 CCCATTTAGTTAGCTCTAATGGCTT 58.935 40.000 19.58 0.00 41.19 4.35
3496 6336 6.205658 CCCATTTAGTTAGCTCTAATGGCTTC 59.794 42.308 19.58 0.00 41.19 3.86
3497 6337 6.995091 CCATTTAGTTAGCTCTAATGGCTTCT 59.005 38.462 15.65 0.00 38.76 2.85
3498 6338 8.150945 CCATTTAGTTAGCTCTAATGGCTTCTA 58.849 37.037 15.65 0.00 38.76 2.10
3499 6339 9.717942 CATTTAGTTAGCTCTAATGGCTTCTAT 57.282 33.333 0.00 0.00 40.74 1.98
3502 6342 9.589461 TTAGTTAGCTCTAATGGCTTCTATACT 57.411 33.333 0.00 0.00 40.74 2.12
3504 6344 9.016438 AGTTAGCTCTAATGGCTTCTATACTAC 57.984 37.037 0.00 0.00 40.74 2.73
3505 6345 9.016438 GTTAGCTCTAATGGCTTCTATACTACT 57.984 37.037 0.00 0.00 40.74 2.57
3508 6348 9.762381 AGCTCTAATGGCTTCTATACTACTATT 57.238 33.333 0.00 0.00 36.56 1.73
3539 6379 9.833182 GAGCAAACATTTTCTTTTTAAAAACCA 57.167 25.926 9.31 0.00 32.42 3.67
3540 6380 9.619316 AGCAAACATTTTCTTTTTAAAAACCAC 57.381 25.926 9.31 0.00 32.42 4.16
3541 6381 8.855279 GCAAACATTTTCTTTTTAAAAACCACC 58.145 29.630 9.31 0.00 32.42 4.61
3542 6382 9.347934 CAAACATTTTCTTTTTAAAAACCACCC 57.652 29.630 9.31 0.00 32.42 4.61
3543 6383 7.310072 ACATTTTCTTTTTAAAAACCACCCG 57.690 32.000 9.31 0.00 32.42 5.28
3544 6384 6.879993 ACATTTTCTTTTTAAAAACCACCCGT 59.120 30.769 9.31 1.65 32.42 5.28
3545 6385 6.964741 TTTTCTTTTTAAAAACCACCCGTC 57.035 33.333 9.31 0.00 0.00 4.79
3546 6386 5.656213 TTCTTTTTAAAAACCACCCGTCA 57.344 34.783 9.31 0.00 0.00 4.35
3547 6387 5.656213 TCTTTTTAAAAACCACCCGTCAA 57.344 34.783 9.31 0.00 0.00 3.18
3548 6388 5.652518 TCTTTTTAAAAACCACCCGTCAAG 58.347 37.500 9.31 0.00 0.00 3.02
3549 6389 5.185442 TCTTTTTAAAAACCACCCGTCAAGT 59.815 36.000 9.31 0.00 0.00 3.16
3550 6390 4.373348 TTTAAAAACCACCCGTCAAGTG 57.627 40.909 0.00 0.00 34.91 3.16
3551 6391 1.842052 AAAAACCACCCGTCAAGTGT 58.158 45.000 0.00 0.00 33.20 3.55
3552 6392 2.713863 AAAACCACCCGTCAAGTGTA 57.286 45.000 0.00 0.00 33.20 2.90
3553 6393 1.957668 AAACCACCCGTCAAGTGTAC 58.042 50.000 0.00 0.00 33.20 2.90
3554 6394 0.107268 AACCACCCGTCAAGTGTACC 59.893 55.000 0.00 0.00 33.20 3.34
3555 6395 1.004200 CCACCCGTCAAGTGTACCC 60.004 63.158 0.00 0.00 33.20 3.69
3556 6396 1.749665 CACCCGTCAAGTGTACCCA 59.250 57.895 0.00 0.00 0.00 4.51
3557 6397 0.320421 CACCCGTCAAGTGTACCCAG 60.320 60.000 0.00 0.00 0.00 4.45
3558 6398 0.761702 ACCCGTCAAGTGTACCCAGT 60.762 55.000 0.00 0.00 0.00 4.00
3559 6399 0.037605 CCCGTCAAGTGTACCCAGTC 60.038 60.000 0.00 0.00 0.00 3.51
3560 6400 0.966920 CCGTCAAGTGTACCCAGTCT 59.033 55.000 0.00 0.00 0.00 3.24
3561 6401 1.336887 CCGTCAAGTGTACCCAGTCTG 60.337 57.143 0.00 0.00 0.00 3.51
3562 6402 1.611977 CGTCAAGTGTACCCAGTCTGA 59.388 52.381 0.00 0.00 0.00 3.27
3563 6403 2.231478 CGTCAAGTGTACCCAGTCTGAT 59.769 50.000 0.00 0.00 0.00 2.90
3564 6404 3.306088 CGTCAAGTGTACCCAGTCTGATT 60.306 47.826 0.00 0.00 0.00 2.57
3565 6405 4.082408 CGTCAAGTGTACCCAGTCTGATTA 60.082 45.833 0.00 0.00 0.00 1.75
3566 6406 5.411781 GTCAAGTGTACCCAGTCTGATTAG 58.588 45.833 0.00 0.00 0.00 1.73
3567 6407 5.047235 GTCAAGTGTACCCAGTCTGATTAGT 60.047 44.000 0.00 0.00 0.00 2.24
3568 6408 6.152323 GTCAAGTGTACCCAGTCTGATTAGTA 59.848 42.308 0.00 0.00 0.00 1.82
3569 6409 6.152323 TCAAGTGTACCCAGTCTGATTAGTAC 59.848 42.308 0.00 8.14 0.00 2.73
3570 6410 4.954826 AGTGTACCCAGTCTGATTAGTACC 59.045 45.833 0.00 3.23 31.28 3.34
3571 6411 3.949754 TGTACCCAGTCTGATTAGTACCG 59.050 47.826 0.00 0.00 31.28 4.02
3572 6412 1.755380 ACCCAGTCTGATTAGTACCGC 59.245 52.381 0.00 0.00 0.00 5.68
3573 6413 1.068741 CCCAGTCTGATTAGTACCGCC 59.931 57.143 0.00 0.00 0.00 6.13
3574 6414 1.754803 CCAGTCTGATTAGTACCGCCA 59.245 52.381 0.00 0.00 0.00 5.69
3575 6415 2.223829 CCAGTCTGATTAGTACCGCCAG 60.224 54.545 0.00 0.00 0.00 4.85
3576 6416 2.688446 CAGTCTGATTAGTACCGCCAGA 59.312 50.000 0.00 0.00 0.00 3.86
3577 6417 3.319405 CAGTCTGATTAGTACCGCCAGAT 59.681 47.826 0.00 0.00 36.44 2.90
3578 6418 3.961408 AGTCTGATTAGTACCGCCAGATT 59.039 43.478 7.72 2.67 36.44 2.40
3579 6419 5.009710 CAGTCTGATTAGTACCGCCAGATTA 59.990 44.000 0.00 0.00 36.44 1.75
3580 6420 5.009811 AGTCTGATTAGTACCGCCAGATTAC 59.990 44.000 7.72 0.00 36.44 1.89
3581 6421 4.280174 TCTGATTAGTACCGCCAGATTACC 59.720 45.833 0.00 0.00 0.00 2.85
3582 6422 3.322828 TGATTAGTACCGCCAGATTACCC 59.677 47.826 0.00 0.00 0.00 3.69
3583 6423 1.708341 TAGTACCGCCAGATTACCCC 58.292 55.000 0.00 0.00 0.00 4.95
3584 6424 0.325860 AGTACCGCCAGATTACCCCA 60.326 55.000 0.00 0.00 0.00 4.96
3585 6425 0.179065 GTACCGCCAGATTACCCCAC 60.179 60.000 0.00 0.00 0.00 4.61
3586 6426 0.325860 TACCGCCAGATTACCCCACT 60.326 55.000 0.00 0.00 0.00 4.00
3587 6427 1.205460 ACCGCCAGATTACCCCACTT 61.205 55.000 0.00 0.00 0.00 3.16
3588 6428 0.834612 CCGCCAGATTACCCCACTTA 59.165 55.000 0.00 0.00 0.00 2.24
3589 6429 1.202651 CCGCCAGATTACCCCACTTAG 60.203 57.143 0.00 0.00 0.00 2.18
3590 6430 1.485066 CGCCAGATTACCCCACTTAGT 59.515 52.381 0.00 0.00 0.00 2.24
3591 6431 2.093128 CGCCAGATTACCCCACTTAGTT 60.093 50.000 0.00 0.00 0.00 2.24
3592 6432 3.133362 CGCCAGATTACCCCACTTAGTTA 59.867 47.826 0.00 0.00 0.00 2.24
3593 6433 4.704965 GCCAGATTACCCCACTTAGTTAG 58.295 47.826 0.00 0.00 0.00 2.34
3594 6434 4.704965 CCAGATTACCCCACTTAGTTAGC 58.295 47.826 0.00 0.00 0.00 3.09
3595 6435 4.409247 CCAGATTACCCCACTTAGTTAGCT 59.591 45.833 0.00 0.00 0.00 3.32
3596 6436 5.453480 CCAGATTACCCCACTTAGTTAGCTC 60.453 48.000 0.00 0.00 0.00 4.09
3597 6437 5.364157 CAGATTACCCCACTTAGTTAGCTCT 59.636 44.000 0.00 0.00 0.00 4.09
3598 6438 6.550108 CAGATTACCCCACTTAGTTAGCTCTA 59.450 42.308 0.00 0.00 0.00 2.43
3599 6439 7.069578 CAGATTACCCCACTTAGTTAGCTCTAA 59.930 40.741 0.00 0.00 0.00 2.10
3600 6440 7.790314 AGATTACCCCACTTAGTTAGCTCTAAT 59.210 37.037 0.00 0.00 30.89 1.73
3601 6441 5.615925 ACCCCACTTAGTTAGCTCTAATG 57.384 43.478 0.00 0.00 30.89 1.90
3602 6442 4.409247 ACCCCACTTAGTTAGCTCTAATGG 59.591 45.833 0.00 3.51 33.56 3.16
3603 6443 4.381411 CCCACTTAGTTAGCTCTAATGGC 58.619 47.826 0.00 0.00 33.08 4.40
3604 6444 4.101741 CCCACTTAGTTAGCTCTAATGGCT 59.898 45.833 0.00 0.00 43.02 4.75
3605 6445 5.293560 CCACTTAGTTAGCTCTAATGGCTC 58.706 45.833 0.00 0.00 40.74 4.70
3606 6446 4.979197 CACTTAGTTAGCTCTAATGGCTCG 59.021 45.833 0.00 0.00 40.74 5.03
3607 6447 4.038162 ACTTAGTTAGCTCTAATGGCTCGG 59.962 45.833 0.00 0.00 40.74 4.63
3608 6448 2.667470 AGTTAGCTCTAATGGCTCGGA 58.333 47.619 0.00 0.00 40.74 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.035102 GGAAACTCCAGGCCGGCT 62.035 66.667 28.56 9.77 36.28 5.52
395 398 2.427245 CGAAGTCTCAGGGGGCGAT 61.427 63.158 0.00 0.00 0.00 4.58
532 577 2.443016 CCCTCTCCCACCTCTCCG 60.443 72.222 0.00 0.00 0.00 4.63
590 635 2.072298 CTCACAGAAGAAAGGCGAAGG 58.928 52.381 0.00 0.00 0.00 3.46
591 636 2.072298 CCTCACAGAAGAAAGGCGAAG 58.928 52.381 0.00 0.00 0.00 3.79
592 637 1.416401 ACCTCACAGAAGAAAGGCGAA 59.584 47.619 0.00 0.00 31.79 4.70
593 638 1.000955 GACCTCACAGAAGAAAGGCGA 59.999 52.381 0.00 0.00 31.79 5.54
594 639 1.001406 AGACCTCACAGAAGAAAGGCG 59.999 52.381 0.00 0.00 31.79 5.52
595 640 2.614229 GGAGACCTCACAGAAGAAAGGC 60.614 54.545 0.00 0.00 31.79 4.35
596 641 2.903135 AGGAGACCTCACAGAAGAAAGG 59.097 50.000 0.00 0.00 34.94 3.11
608 653 0.109689 CACAACGTCGAGGAGACCTC 60.110 60.000 12.85 7.65 46.92 3.85
609 654 1.957562 CACAACGTCGAGGAGACCT 59.042 57.895 12.85 0.00 46.92 3.85
610 655 1.733399 GCACAACGTCGAGGAGACC 60.733 63.158 12.85 0.00 46.92 3.85
611 656 2.081212 CGCACAACGTCGAGGAGAC 61.081 63.158 12.85 2.05 46.16 3.36
612 657 2.254350 CGCACAACGTCGAGGAGA 59.746 61.111 12.85 0.00 36.87 3.71
622 667 3.733727 CCCATTTAAAAGACACGCACAAC 59.266 43.478 0.00 0.00 0.00 3.32
623 668 3.243569 CCCCATTTAAAAGACACGCACAA 60.244 43.478 0.00 0.00 0.00 3.33
624 669 2.294791 CCCCATTTAAAAGACACGCACA 59.705 45.455 0.00 0.00 0.00 4.57
625 670 2.352323 CCCCCATTTAAAAGACACGCAC 60.352 50.000 0.00 0.00 0.00 5.34
626 671 1.889829 CCCCCATTTAAAAGACACGCA 59.110 47.619 0.00 0.00 0.00 5.24
627 672 2.647529 CCCCCATTTAAAAGACACGC 57.352 50.000 0.00 0.00 0.00 5.34
646 691 1.004394 AGGTCGGGGAAGTGAAATTCC 59.996 52.381 0.85 0.85 46.82 3.01
647 692 2.027100 AGAGGTCGGGGAAGTGAAATTC 60.027 50.000 0.00 0.00 0.00 2.17
648 693 1.985895 AGAGGTCGGGGAAGTGAAATT 59.014 47.619 0.00 0.00 0.00 1.82
649 694 1.279271 CAGAGGTCGGGGAAGTGAAAT 59.721 52.381 0.00 0.00 0.00 2.17
650 695 0.685097 CAGAGGTCGGGGAAGTGAAA 59.315 55.000 0.00 0.00 0.00 2.69
651 696 1.827399 GCAGAGGTCGGGGAAGTGAA 61.827 60.000 0.00 0.00 0.00 3.18
652 697 2.283529 GCAGAGGTCGGGGAAGTGA 61.284 63.158 0.00 0.00 0.00 3.41
653 698 2.266055 GCAGAGGTCGGGGAAGTG 59.734 66.667 0.00 0.00 0.00 3.16
654 699 2.203788 TGCAGAGGTCGGGGAAGT 60.204 61.111 0.00 0.00 0.00 3.01
655 700 2.266055 GTGCAGAGGTCGGGGAAG 59.734 66.667 0.00 0.00 0.00 3.46
656 701 3.319198 GGTGCAGAGGTCGGGGAA 61.319 66.667 0.00 0.00 0.00 3.97
657 702 4.631740 TGGTGCAGAGGTCGGGGA 62.632 66.667 0.00 0.00 0.00 4.81
658 703 3.636231 TTGGTGCAGAGGTCGGGG 61.636 66.667 0.00 0.00 0.00 5.73
659 704 1.541310 TAGTTGGTGCAGAGGTCGGG 61.541 60.000 0.00 0.00 0.00 5.14
660 705 0.108615 CTAGTTGGTGCAGAGGTCGG 60.109 60.000 0.00 0.00 0.00 4.79
661 706 0.888619 TCTAGTTGGTGCAGAGGTCG 59.111 55.000 0.00 0.00 0.00 4.79
662 707 2.898705 CATCTAGTTGGTGCAGAGGTC 58.101 52.381 0.00 0.00 0.00 3.85
663 708 1.065854 GCATCTAGTTGGTGCAGAGGT 60.066 52.381 4.86 0.00 38.68 3.85
664 709 1.065926 TGCATCTAGTTGGTGCAGAGG 60.066 52.381 8.51 0.00 43.30 3.69
665 710 2.391616 TGCATCTAGTTGGTGCAGAG 57.608 50.000 8.51 0.00 43.30 3.35
669 714 1.867233 CCGTATGCATCTAGTTGGTGC 59.133 52.381 0.19 2.58 39.26 5.01
670 715 1.867233 GCCGTATGCATCTAGTTGGTG 59.133 52.381 0.19 0.00 40.77 4.17
671 716 1.762957 AGCCGTATGCATCTAGTTGGT 59.237 47.619 0.19 0.00 44.83 3.67
672 717 2.533266 AGCCGTATGCATCTAGTTGG 57.467 50.000 0.19 0.00 44.83 3.77
673 718 6.545504 AAAATAGCCGTATGCATCTAGTTG 57.454 37.500 0.19 0.00 44.83 3.16
674 719 7.442656 ACTAAAATAGCCGTATGCATCTAGTT 58.557 34.615 0.19 0.93 44.83 2.24
675 720 6.994221 ACTAAAATAGCCGTATGCATCTAGT 58.006 36.000 0.19 0.00 44.83 2.57
676 721 9.025020 CATACTAAAATAGCCGTATGCATCTAG 57.975 37.037 0.19 0.00 44.83 2.43
677 722 8.745590 TCATACTAAAATAGCCGTATGCATCTA 58.254 33.333 0.19 0.00 44.83 1.98
678 723 7.611770 TCATACTAAAATAGCCGTATGCATCT 58.388 34.615 0.19 0.00 44.83 2.90
679 724 7.545965 ACTCATACTAAAATAGCCGTATGCATC 59.454 37.037 0.19 0.00 44.83 3.91
680 725 7.386851 ACTCATACTAAAATAGCCGTATGCAT 58.613 34.615 3.79 3.79 44.83 3.96
681 726 6.755206 ACTCATACTAAAATAGCCGTATGCA 58.245 36.000 0.00 0.00 44.83 3.96
682 727 7.275123 GGTACTCATACTAAAATAGCCGTATGC 59.725 40.741 0.00 0.00 39.17 3.14
683 728 8.301720 TGGTACTCATACTAAAATAGCCGTATG 58.698 37.037 0.00 0.00 40.13 2.39
684 729 8.413309 TGGTACTCATACTAAAATAGCCGTAT 57.587 34.615 0.00 0.00 0.00 3.06
685 730 7.822161 TGGTACTCATACTAAAATAGCCGTA 57.178 36.000 0.00 0.00 0.00 4.02
686 731 6.720112 TGGTACTCATACTAAAATAGCCGT 57.280 37.500 0.00 0.00 0.00 5.68
687 732 7.431249 TCTTGGTACTCATACTAAAATAGCCG 58.569 38.462 0.00 0.00 32.02 5.52
698 743 9.654663 GGACCATATTTATCTTGGTACTCATAC 57.345 37.037 0.00 0.00 43.67 2.39
761 806 5.415701 GGTTGTGTATGATGAAACCACTCAT 59.584 40.000 0.00 0.00 40.05 2.90
762 807 4.759693 GGTTGTGTATGATGAAACCACTCA 59.240 41.667 0.00 0.00 40.05 3.41
763 808 4.142902 CGGTTGTGTATGATGAAACCACTC 60.143 45.833 3.99 0.00 40.26 3.51
764 809 3.751175 CGGTTGTGTATGATGAAACCACT 59.249 43.478 3.99 0.00 40.26 4.00
765 810 3.669557 GCGGTTGTGTATGATGAAACCAC 60.670 47.826 3.99 0.00 40.26 4.16
766 811 2.486203 GCGGTTGTGTATGATGAAACCA 59.514 45.455 3.99 0.00 40.26 3.67
767 812 2.486203 TGCGGTTGTGTATGATGAAACC 59.514 45.455 0.00 0.00 37.51 3.27
768 813 3.822594 TGCGGTTGTGTATGATGAAAC 57.177 42.857 0.00 0.00 0.00 2.78
769 814 3.427368 GCATGCGGTTGTGTATGATGAAA 60.427 43.478 0.00 0.00 34.32 2.69
770 815 2.097304 GCATGCGGTTGTGTATGATGAA 59.903 45.455 0.00 0.00 34.32 2.57
771 816 1.670295 GCATGCGGTTGTGTATGATGA 59.330 47.619 0.00 0.00 34.32 2.92
772 817 1.268692 GGCATGCGGTTGTGTATGATG 60.269 52.381 12.44 0.00 34.32 3.07
773 818 1.024271 GGCATGCGGTTGTGTATGAT 58.976 50.000 12.44 0.00 34.32 2.45
774 819 1.029408 GGGCATGCGGTTGTGTATGA 61.029 55.000 12.44 0.00 34.32 2.15
775 820 1.311651 TGGGCATGCGGTTGTGTATG 61.312 55.000 12.44 0.00 35.37 2.39
776 821 0.610509 TTGGGCATGCGGTTGTGTAT 60.611 50.000 12.44 0.00 0.00 2.29
777 822 1.228276 TTGGGCATGCGGTTGTGTA 60.228 52.632 12.44 0.00 0.00 2.90
778 823 2.520500 TTGGGCATGCGGTTGTGT 60.521 55.556 12.44 0.00 0.00 3.72
779 824 2.049248 GTTGGGCATGCGGTTGTG 60.049 61.111 12.44 0.00 0.00 3.33
780 825 3.302344 GGTTGGGCATGCGGTTGT 61.302 61.111 12.44 0.00 0.00 3.32
781 826 3.301554 TGGTTGGGCATGCGGTTG 61.302 61.111 12.44 0.00 0.00 3.77
782 827 3.302344 GTGGTTGGGCATGCGGTT 61.302 61.111 12.44 0.00 0.00 4.44
783 828 4.284550 AGTGGTTGGGCATGCGGT 62.285 61.111 12.44 0.00 0.00 5.68
784 829 3.751246 CAGTGGTTGGGCATGCGG 61.751 66.667 12.44 0.00 0.00 5.69
785 830 2.672651 TCAGTGGTTGGGCATGCG 60.673 61.111 12.44 0.00 0.00 4.73
786 831 3.281240 CTCAGTGGTTGGGCATGC 58.719 61.111 9.90 9.90 0.00 4.06
791 836 1.604593 CCTTGGCTCAGTGGTTGGG 60.605 63.158 0.00 0.00 0.00 4.12
792 837 2.270986 GCCTTGGCTCAGTGGTTGG 61.271 63.158 4.11 0.00 0.00 3.77
793 838 1.228367 AGCCTTGGCTCAGTGGTTG 60.228 57.895 8.56 0.00 0.00 3.77
794 839 1.073897 GAGCCTTGGCTCAGTGGTT 59.926 57.895 30.25 1.25 36.86 3.67
795 840 1.835927 GAGAGCCTTGGCTCAGTGGT 61.836 60.000 34.40 19.17 39.13 4.16
796 841 1.078567 GAGAGCCTTGGCTCAGTGG 60.079 63.158 34.40 0.00 39.13 4.00
797 842 0.391395 CAGAGAGCCTTGGCTCAGTG 60.391 60.000 34.40 27.27 39.13 3.66
798 843 1.551908 CCAGAGAGCCTTGGCTCAGT 61.552 60.000 34.40 22.13 39.13 3.41
799 844 1.221293 CCAGAGAGCCTTGGCTCAG 59.779 63.158 34.40 24.85 39.13 3.35
800 845 0.837691 TTCCAGAGAGCCTTGGCTCA 60.838 55.000 34.40 17.00 39.13 4.26
801 846 0.107752 CTTCCAGAGAGCCTTGGCTC 60.108 60.000 28.67 28.67 37.11 4.70
802 847 1.560866 CCTTCCAGAGAGCCTTGGCT 61.561 60.000 14.69 14.69 0.00 4.75
803 848 1.077858 CCTTCCAGAGAGCCTTGGC 60.078 63.158 2.97 2.97 0.00 4.52
804 849 1.077858 GCCTTCCAGAGAGCCTTGG 60.078 63.158 0.00 0.00 0.00 3.61
805 850 0.107752 GAGCCTTCCAGAGAGCCTTG 60.108 60.000 0.00 0.00 0.00 3.61
806 851 1.271127 GGAGCCTTCCAGAGAGCCTT 61.271 60.000 0.00 0.00 43.45 4.35
807 852 1.688884 GGAGCCTTCCAGAGAGCCT 60.689 63.158 0.00 0.00 43.45 4.58
808 853 0.397816 TAGGAGCCTTCCAGAGAGCC 60.398 60.000 0.00 0.00 46.64 4.70
809 854 1.039856 CTAGGAGCCTTCCAGAGAGC 58.960 60.000 0.00 0.00 46.64 4.09
810 855 1.063266 ACCTAGGAGCCTTCCAGAGAG 60.063 57.143 17.98 0.00 46.64 3.20
811 856 1.011595 ACCTAGGAGCCTTCCAGAGA 58.988 55.000 17.98 0.00 46.64 3.10
812 857 1.484240 CAACCTAGGAGCCTTCCAGAG 59.516 57.143 17.98 0.00 46.64 3.35
813 858 1.078823 TCAACCTAGGAGCCTTCCAGA 59.921 52.381 17.98 0.00 46.64 3.86
814 859 1.208293 GTCAACCTAGGAGCCTTCCAG 59.792 57.143 17.98 0.00 46.64 3.86
815 860 1.276622 GTCAACCTAGGAGCCTTCCA 58.723 55.000 17.98 0.00 46.64 3.53
816 861 1.276622 TGTCAACCTAGGAGCCTTCC 58.723 55.000 17.98 0.00 44.39 3.46
817 862 2.303311 AGTTGTCAACCTAGGAGCCTTC 59.697 50.000 17.98 1.34 0.00 3.46
818 863 2.339769 AGTTGTCAACCTAGGAGCCTT 58.660 47.619 17.98 0.00 0.00 4.35
819 864 2.031495 AGTTGTCAACCTAGGAGCCT 57.969 50.000 17.98 0.00 0.00 4.58
820 865 4.081087 TGAATAGTTGTCAACCTAGGAGCC 60.081 45.833 17.98 0.00 0.00 4.70
821 866 5.086104 TGAATAGTTGTCAACCTAGGAGC 57.914 43.478 17.98 2.77 0.00 4.70
822 867 7.331026 TCATTGAATAGTTGTCAACCTAGGAG 58.669 38.462 17.98 7.77 37.80 3.69
823 868 7.252612 TCATTGAATAGTTGTCAACCTAGGA 57.747 36.000 17.98 0.00 37.80 2.94
824 869 9.784531 ATATCATTGAATAGTTGTCAACCTAGG 57.215 33.333 12.17 7.41 37.80 3.02
899 944 9.230932 GCGTAATACGTTTTCTTAGACTATCTT 57.769 33.333 14.57 0.00 44.73 2.40
900 945 8.619546 AGCGTAATACGTTTTCTTAGACTATCT 58.380 33.333 14.57 0.00 44.73 1.98
901 946 8.779603 AGCGTAATACGTTTTCTTAGACTATC 57.220 34.615 14.57 0.00 44.73 2.08
902 947 8.619546 AGAGCGTAATACGTTTTCTTAGACTAT 58.380 33.333 14.57 0.00 44.73 2.12
903 948 7.978982 AGAGCGTAATACGTTTTCTTAGACTA 58.021 34.615 14.57 0.00 44.73 2.59
904 949 6.850555 AGAGCGTAATACGTTTTCTTAGACT 58.149 36.000 14.57 0.00 44.73 3.24
905 950 8.779603 ATAGAGCGTAATACGTTTTCTTAGAC 57.220 34.615 14.57 0.00 44.73 2.59
912 957 9.784680 CCATCTATATAGAGCGTAATACGTTTT 57.215 33.333 17.22 6.31 37.80 2.43
913 958 9.170734 TCCATCTATATAGAGCGTAATACGTTT 57.829 33.333 17.22 3.28 37.80 3.60
914 959 8.728337 TCCATCTATATAGAGCGTAATACGTT 57.272 34.615 17.22 8.40 37.80 3.99
915 960 8.728337 TTCCATCTATATAGAGCGTAATACGT 57.272 34.615 17.22 0.00 37.80 3.57
916 961 8.283992 CCTTCCATCTATATAGAGCGTAATACG 58.716 40.741 17.22 8.64 38.23 3.06
917 962 9.339850 TCCTTCCATCTATATAGAGCGTAATAC 57.660 37.037 17.22 0.00 35.50 1.89
918 963 9.562408 CTCCTTCCATCTATATAGAGCGTAATA 57.438 37.037 17.22 1.81 35.50 0.98
919 964 7.504238 CCTCCTTCCATCTATATAGAGCGTAAT 59.496 40.741 17.22 0.00 35.50 1.89
920 965 6.829298 CCTCCTTCCATCTATATAGAGCGTAA 59.171 42.308 17.22 8.44 35.50 3.18
921 966 6.358178 CCTCCTTCCATCTATATAGAGCGTA 58.642 44.000 17.22 3.94 35.50 4.42
922 967 5.197451 CCTCCTTCCATCTATATAGAGCGT 58.803 45.833 17.22 0.00 35.50 5.07
923 968 4.582656 CCCTCCTTCCATCTATATAGAGCG 59.417 50.000 17.22 10.84 35.50 5.03
924 969 5.772004 TCCCTCCTTCCATCTATATAGAGC 58.228 45.833 17.22 0.00 35.50 4.09
925 970 6.980577 ACTCCCTCCTTCCATCTATATAGAG 58.019 44.000 17.22 9.60 35.50 2.43
926 971 6.996876 ACTCCCTCCTTCCATCTATATAGA 57.003 41.667 14.76 14.76 36.65 1.98
927 972 7.878495 ACTACTCCCTCCTTCCATCTATATAG 58.122 42.308 3.10 3.10 0.00 1.31
928 973 7.848821 ACTACTCCCTCCTTCCATCTATATA 57.151 40.000 0.00 0.00 0.00 0.86
929 974 6.744802 ACTACTCCCTCCTTCCATCTATAT 57.255 41.667 0.00 0.00 0.00 0.86
930 975 6.217900 CCTACTACTCCCTCCTTCCATCTATA 59.782 46.154 0.00 0.00 0.00 1.31
931 976 5.015817 CCTACTACTCCCTCCTTCCATCTAT 59.984 48.000 0.00 0.00 0.00 1.98
932 977 4.354387 CCTACTACTCCCTCCTTCCATCTA 59.646 50.000 0.00 0.00 0.00 1.98
933 978 3.141272 CCTACTACTCCCTCCTTCCATCT 59.859 52.174 0.00 0.00 0.00 2.90
934 979 3.140519 TCCTACTACTCCCTCCTTCCATC 59.859 52.174 0.00 0.00 0.00 3.51
935 980 3.140143 TCCTACTACTCCCTCCTTCCAT 58.860 50.000 0.00 0.00 0.00 3.41
936 981 2.581365 TCCTACTACTCCCTCCTTCCA 58.419 52.381 0.00 0.00 0.00 3.53
937 982 3.907459 ATCCTACTACTCCCTCCTTCC 57.093 52.381 0.00 0.00 0.00 3.46
938 983 5.587760 ACTATCCTACTACTCCCTCCTTC 57.412 47.826 0.00 0.00 0.00 3.46
939 984 6.159712 AGTACTATCCTACTACTCCCTCCTT 58.840 44.000 0.00 0.00 0.00 3.36
940 985 5.740569 AGTACTATCCTACTACTCCCTCCT 58.259 45.833 0.00 0.00 0.00 3.69
941 986 5.337491 CGAGTACTATCCTACTACTCCCTCC 60.337 52.000 0.00 0.00 35.07 4.30
942 987 5.723295 CGAGTACTATCCTACTACTCCCTC 58.277 50.000 0.00 0.00 35.07 4.30
943 988 4.020307 GCGAGTACTATCCTACTACTCCCT 60.020 50.000 0.00 0.00 35.07 4.20
944 989 4.252878 GCGAGTACTATCCTACTACTCCC 58.747 52.174 0.00 0.00 35.07 4.30
945 990 4.020307 AGGCGAGTACTATCCTACTACTCC 60.020 50.000 12.38 0.00 35.07 3.85
946 991 5.151297 AGGCGAGTACTATCCTACTACTC 57.849 47.826 12.38 0.00 35.15 2.59
947 992 4.020307 GGAGGCGAGTACTATCCTACTACT 60.020 50.000 14.86 0.00 0.00 2.57
948 993 4.020307 AGGAGGCGAGTACTATCCTACTAC 60.020 50.000 20.65 10.24 38.10 2.73
949 994 4.166539 AGGAGGCGAGTACTATCCTACTA 58.833 47.826 20.65 0.00 38.10 1.82
950 995 2.981081 AGGAGGCGAGTACTATCCTACT 59.019 50.000 17.76 17.76 38.62 2.57
951 996 3.421919 AGGAGGCGAGTACTATCCTAC 57.578 52.381 14.47 14.47 38.62 3.18
952 997 3.518705 CCTAGGAGGCGAGTACTATCCTA 59.481 52.174 17.91 17.91 40.77 2.94
1007 1052 3.576259 CGGGAACAAGGGGTGGGT 61.576 66.667 0.00 0.00 0.00 4.51
1008 1053 3.576259 ACGGGAACAAGGGGTGGG 61.576 66.667 0.00 0.00 0.00 4.61
1009 1054 1.770749 TACACGGGAACAAGGGGTGG 61.771 60.000 0.00 0.00 33.07 4.61
1010 1055 0.326927 ATACACGGGAACAAGGGGTG 59.673 55.000 0.00 0.00 34.87 4.61
1011 1056 1.556451 GTATACACGGGAACAAGGGGT 59.444 52.381 0.00 0.00 0.00 4.95
1012 1057 1.835531 AGTATACACGGGAACAAGGGG 59.164 52.381 5.50 0.00 0.00 4.79
1014 1059 3.518590 GTGAGTATACACGGGAACAAGG 58.481 50.000 5.50 0.00 0.00 3.61
1015 1060 3.194968 AGGTGAGTATACACGGGAACAAG 59.805 47.826 5.50 0.00 41.12 3.16
1016 1061 3.167485 AGGTGAGTATACACGGGAACAA 58.833 45.455 5.50 0.00 41.12 2.83
1017 1062 2.756760 GAGGTGAGTATACACGGGAACA 59.243 50.000 5.50 0.00 41.12 3.18
1024 1078 2.022195 TGCTCGGAGGTGAGTATACAC 58.978 52.381 7.20 0.00 38.28 2.90
1084 1143 3.941483 GCTGCTTGCTAAGAGGTGATAAA 59.059 43.478 0.00 0.00 38.95 1.40
1087 1146 2.035530 GCTGCTTGCTAAGAGGTGAT 57.964 50.000 0.00 0.00 38.95 3.06
1088 1147 3.540211 GCTGCTTGCTAAGAGGTGA 57.460 52.632 0.00 0.00 38.95 4.02
1106 1165 1.586028 CGGCAACAATGGGGAACAG 59.414 57.895 0.00 0.00 0.00 3.16
1136 1195 2.099141 TTGAGGAAGATGCTTCGTGG 57.901 50.000 7.06 0.00 0.00 4.94
1139 1198 2.354259 AGCTTTGAGGAAGATGCTTCG 58.646 47.619 0.00 0.00 37.57 3.79
1141 1200 4.006319 GTGTAGCTTTGAGGAAGATGCTT 58.994 43.478 0.00 0.00 37.29 3.91
1168 1230 1.135053 GGTGAGAAAGAGTAGCCGACC 60.135 57.143 0.00 0.00 0.00 4.79
1169 1231 1.135053 GGGTGAGAAAGAGTAGCCGAC 60.135 57.143 0.00 0.00 0.00 4.79
1215 1277 4.133373 CCACCATGGCCAGGAGGG 62.133 72.222 21.32 15.86 40.85 4.30
1267 3402 3.266510 AGGAAGCAAGCATAATCGACA 57.733 42.857 0.00 0.00 0.00 4.35
1270 3405 2.291741 GGGAAGGAAGCAAGCATAATCG 59.708 50.000 0.00 0.00 0.00 3.34
1322 3457 1.003331 GAGGTGAGCGTACTCGATGAG 60.003 57.143 0.00 0.00 46.69 2.90
1338 3473 4.107051 CGAACGCGGGTACGAGGT 62.107 66.667 12.47 0.00 44.36 3.85
1558 3693 1.284297 CGCTGCAGTTGATGACGACA 61.284 55.000 16.64 0.00 33.15 4.35
1981 4120 2.106684 GAGGTCCCTGGAAAGTTTGACT 59.893 50.000 0.00 0.00 0.00 3.41
2027 4166 3.595819 GCCTGTGATGTTGGCCTC 58.404 61.111 3.32 0.00 40.71 4.70
2541 5298 2.014335 ACCCCTGTACGTTTTATCGC 57.986 50.000 0.00 0.00 0.00 4.58
2558 5318 4.572909 ACACCCGTAAAGAAATGAGTACC 58.427 43.478 0.00 0.00 0.00 3.34
2629 5389 4.102649 GCACGCTTGGTAAATGAAATACC 58.897 43.478 0.00 0.00 42.62 2.73
2723 5485 4.102367 TGCAAGGTAAAAAGGAAGCCAAAT 59.898 37.500 0.00 0.00 0.00 2.32
2727 5489 2.628178 ACTGCAAGGTAAAAAGGAAGCC 59.372 45.455 0.00 0.00 39.30 4.35
2908 5672 5.563085 GCGAGAATACGGATACAAGATCTGT 60.563 44.000 0.00 4.54 42.47 3.41
2910 5674 4.519350 TGCGAGAATACGGATACAAGATCT 59.481 41.667 0.00 0.00 0.00 2.75
2912 5676 4.848562 TGCGAGAATACGGATACAAGAT 57.151 40.909 0.00 0.00 0.00 2.40
2913 5677 4.642445 TTGCGAGAATACGGATACAAGA 57.358 40.909 0.00 0.00 33.24 3.02
2914 5678 5.712217 TTTTGCGAGAATACGGATACAAG 57.288 39.130 0.00 0.00 33.24 3.16
2937 5701 9.074576 ACCTTTTTACGGATACAAGATCTTTTT 57.925 29.630 4.86 0.00 0.00 1.94
2940 5704 6.598064 CCACCTTTTTACGGATACAAGATCTT 59.402 38.462 0.88 0.88 0.00 2.40
2946 5710 5.486735 TCTCCACCTTTTTACGGATACAA 57.513 39.130 0.00 0.00 0.00 2.41
3026 5790 2.970987 AGTTGGGGCCAAGTTTACATT 58.029 42.857 4.39 0.00 36.28 2.71
3181 6017 6.901081 AAAACTTCTTCCCCAAATCTAGTG 57.099 37.500 0.00 0.00 0.00 2.74
3183 6019 7.068716 CCCATAAAACTTCTTCCCCAAATCTAG 59.931 40.741 0.00 0.00 0.00 2.43
3203 6041 7.733047 TGGAGCTACTTATGTTAGATCCCATAA 59.267 37.037 10.39 8.80 43.60 1.90
3207 6045 5.046950 CCTGGAGCTACTTATGTTAGATCCC 60.047 48.000 10.39 0.00 43.60 3.85
3218 6056 5.578157 AAAAACTTCCCTGGAGCTACTTA 57.422 39.130 0.00 0.00 0.00 2.24
3242 6080 4.632153 GAGCAACTCCAACAGTTTCTCTA 58.368 43.478 6.83 0.00 46.38 2.43
3402 6242 9.098355 GGTTTTAAGAAAGAAAATGTTTGCTCT 57.902 29.630 0.00 0.00 0.00 4.09
3403 6243 8.878769 TGGTTTTAAGAAAGAAAATGTTTGCTC 58.121 29.630 0.00 0.00 0.00 4.26
3404 6244 8.664798 GTGGTTTTAAGAAAGAAAATGTTTGCT 58.335 29.630 0.00 0.00 0.00 3.91
3405 6245 7.908082 GGTGGTTTTAAGAAAGAAAATGTTTGC 59.092 33.333 0.00 0.00 0.00 3.68
3406 6246 8.394877 GGGTGGTTTTAAGAAAGAAAATGTTTG 58.605 33.333 0.00 0.00 0.00 2.93
3407 6247 7.279090 CGGGTGGTTTTAAGAAAGAAAATGTTT 59.721 33.333 0.00 0.00 0.00 2.83
3408 6248 6.759356 CGGGTGGTTTTAAGAAAGAAAATGTT 59.241 34.615 0.00 0.00 0.00 2.71
3409 6249 6.127281 ACGGGTGGTTTTAAGAAAGAAAATGT 60.127 34.615 0.00 0.00 0.00 2.71
3410 6250 6.277605 ACGGGTGGTTTTAAGAAAGAAAATG 58.722 36.000 0.00 0.00 0.00 2.32
3411 6251 6.097129 TGACGGGTGGTTTTAAGAAAGAAAAT 59.903 34.615 0.00 0.00 0.00 1.82
3412 6252 5.418209 TGACGGGTGGTTTTAAGAAAGAAAA 59.582 36.000 0.00 0.00 0.00 2.29
3413 6253 4.948621 TGACGGGTGGTTTTAAGAAAGAAA 59.051 37.500 0.00 0.00 0.00 2.52
3414 6254 4.525024 TGACGGGTGGTTTTAAGAAAGAA 58.475 39.130 0.00 0.00 0.00 2.52
3415 6255 4.153673 TGACGGGTGGTTTTAAGAAAGA 57.846 40.909 0.00 0.00 0.00 2.52
3416 6256 4.337274 ACTTGACGGGTGGTTTTAAGAAAG 59.663 41.667 0.00 0.00 0.00 2.62
3417 6257 4.096682 CACTTGACGGGTGGTTTTAAGAAA 59.903 41.667 0.00 0.00 0.00 2.52
3418 6258 3.628487 CACTTGACGGGTGGTTTTAAGAA 59.372 43.478 0.00 0.00 0.00 2.52
3419 6259 3.207778 CACTTGACGGGTGGTTTTAAGA 58.792 45.455 0.00 0.00 0.00 2.10
3420 6260 2.946990 ACACTTGACGGGTGGTTTTAAG 59.053 45.455 0.00 0.00 38.83 1.85
3421 6261 3.002038 ACACTTGACGGGTGGTTTTAA 57.998 42.857 0.00 0.00 38.83 1.52
3422 6262 2.713863 ACACTTGACGGGTGGTTTTA 57.286 45.000 0.00 0.00 38.83 1.52
3423 6263 2.291365 GTACACTTGACGGGTGGTTTT 58.709 47.619 0.00 0.00 38.83 2.43
3424 6264 1.475571 GGTACACTTGACGGGTGGTTT 60.476 52.381 0.00 0.00 38.83 3.27
3425 6265 0.107268 GGTACACTTGACGGGTGGTT 59.893 55.000 0.00 0.00 38.83 3.67
3426 6266 1.750297 GGTACACTTGACGGGTGGT 59.250 57.895 0.00 0.00 38.83 4.16
3427 6267 1.004200 GGGTACACTTGACGGGTGG 60.004 63.158 0.00 0.00 38.83 4.61
3428 6268 0.320421 CTGGGTACACTTGACGGGTG 60.320 60.000 0.00 0.00 40.19 4.61
3429 6269 0.761702 ACTGGGTACACTTGACGGGT 60.762 55.000 0.00 0.00 0.00 5.28
3430 6270 0.037605 GACTGGGTACACTTGACGGG 60.038 60.000 0.00 0.00 0.00 5.28
3431 6271 0.966920 AGACTGGGTACACTTGACGG 59.033 55.000 0.00 0.00 0.00 4.79
3432 6272 1.611977 TCAGACTGGGTACACTTGACG 59.388 52.381 1.81 0.00 0.00 4.35
3433 6273 3.963428 ATCAGACTGGGTACACTTGAC 57.037 47.619 1.81 0.00 0.00 3.18
3434 6274 5.084519 AGTAATCAGACTGGGTACACTTGA 58.915 41.667 14.88 0.00 0.00 3.02
3435 6275 5.407407 AGTAATCAGACTGGGTACACTTG 57.593 43.478 14.88 0.00 0.00 3.16
3436 6276 5.421374 GGTAGTAATCAGACTGGGTACACTT 59.579 44.000 14.88 0.00 0.00 3.16
3437 6277 4.954826 GGTAGTAATCAGACTGGGTACACT 59.045 45.833 14.88 9.06 0.00 3.55
3438 6278 4.201990 CGGTAGTAATCAGACTGGGTACAC 60.202 50.000 14.88 0.00 0.00 2.90
3439 6279 3.949754 CGGTAGTAATCAGACTGGGTACA 59.050 47.826 14.88 3.53 0.00 2.90
3440 6280 3.243334 GCGGTAGTAATCAGACTGGGTAC 60.243 52.174 1.81 5.60 0.00 3.34
3441 6281 2.954318 GCGGTAGTAATCAGACTGGGTA 59.046 50.000 1.81 0.00 0.00 3.69
3442 6282 1.755380 GCGGTAGTAATCAGACTGGGT 59.245 52.381 1.81 0.00 0.00 4.51
3443 6283 1.068741 GGCGGTAGTAATCAGACTGGG 59.931 57.143 1.81 0.00 0.00 4.45
3444 6284 1.754803 TGGCGGTAGTAATCAGACTGG 59.245 52.381 1.81 0.00 0.00 4.00
3445 6285 2.688446 TCTGGCGGTAGTAATCAGACTG 59.312 50.000 0.00 0.00 30.58 3.51
3446 6286 3.014304 TCTGGCGGTAGTAATCAGACT 57.986 47.619 0.00 0.00 30.58 3.24
3447 6287 4.323553 AATCTGGCGGTAGTAATCAGAC 57.676 45.455 0.00 0.00 37.31 3.51
3448 6288 4.280174 GGTAATCTGGCGGTAGTAATCAGA 59.720 45.833 0.00 0.00 38.59 3.27
3449 6289 4.557205 GGTAATCTGGCGGTAGTAATCAG 58.443 47.826 0.00 0.00 0.00 2.90
3450 6290 3.322828 GGGTAATCTGGCGGTAGTAATCA 59.677 47.826 0.00 0.00 0.00 2.57
3451 6291 3.306571 GGGGTAATCTGGCGGTAGTAATC 60.307 52.174 0.00 0.00 0.00 1.75
3452 6292 2.636403 GGGGTAATCTGGCGGTAGTAAT 59.364 50.000 0.00 0.00 0.00 1.89
3453 6293 2.041701 GGGGTAATCTGGCGGTAGTAA 58.958 52.381 0.00 0.00 0.00 2.24
3454 6294 1.063038 TGGGGTAATCTGGCGGTAGTA 60.063 52.381 0.00 0.00 0.00 1.82
3455 6295 0.325860 TGGGGTAATCTGGCGGTAGT 60.326 55.000 0.00 0.00 0.00 2.73
3456 6296 1.056660 ATGGGGTAATCTGGCGGTAG 58.943 55.000 0.00 0.00 0.00 3.18
3457 6297 1.513858 AATGGGGTAATCTGGCGGTA 58.486 50.000 0.00 0.00 0.00 4.02
3458 6298 0.629058 AAATGGGGTAATCTGGCGGT 59.371 50.000 0.00 0.00 0.00 5.68
3459 6299 2.158667 ACTAAATGGGGTAATCTGGCGG 60.159 50.000 0.00 0.00 0.00 6.13
3460 6300 3.208747 ACTAAATGGGGTAATCTGGCG 57.791 47.619 0.00 0.00 0.00 5.69
3461 6301 4.519350 GCTAACTAAATGGGGTAATCTGGC 59.481 45.833 0.00 0.00 0.00 4.85
3462 6302 5.941788 AGCTAACTAAATGGGGTAATCTGG 58.058 41.667 0.00 0.00 0.00 3.86
3463 6303 6.831976 AGAGCTAACTAAATGGGGTAATCTG 58.168 40.000 0.00 0.00 0.00 2.90
3464 6304 8.562949 TTAGAGCTAACTAAATGGGGTAATCT 57.437 34.615 0.00 0.00 30.74 2.40
3465 6305 9.220767 CATTAGAGCTAACTAAATGGGGTAATC 57.779 37.037 0.00 0.00 36.23 1.75
3466 6306 8.164070 CCATTAGAGCTAACTAAATGGGGTAAT 58.836 37.037 13.36 0.00 36.23 1.89
3467 6307 7.514721 CCATTAGAGCTAACTAAATGGGGTAA 58.485 38.462 13.36 0.00 36.23 2.85
3468 6308 6.465321 GCCATTAGAGCTAACTAAATGGGGTA 60.465 42.308 18.87 0.00 36.23 3.69
3469 6309 5.690364 GCCATTAGAGCTAACTAAATGGGGT 60.690 44.000 18.87 0.00 36.23 4.95
3470 6310 4.762251 GCCATTAGAGCTAACTAAATGGGG 59.238 45.833 18.87 11.17 36.23 4.96
3471 6311 5.625150 AGCCATTAGAGCTAACTAAATGGG 58.375 41.667 18.87 12.82 39.29 4.00
3472 6312 6.995091 AGAAGCCATTAGAGCTAACTAAATGG 59.005 38.462 15.49 15.49 40.49 3.16
3473 6313 9.717942 ATAGAAGCCATTAGAGCTAACTAAATG 57.282 33.333 0.00 0.42 40.49 2.32
3476 6316 9.589461 AGTATAGAAGCCATTAGAGCTAACTAA 57.411 33.333 0.00 0.00 40.49 2.24
3478 6318 9.016438 GTAGTATAGAAGCCATTAGAGCTAACT 57.984 37.037 0.00 0.00 40.49 2.24
3479 6319 9.016438 AGTAGTATAGAAGCCATTAGAGCTAAC 57.984 37.037 0.00 0.00 40.49 2.34
3482 6322 9.762381 AATAGTAGTATAGAAGCCATTAGAGCT 57.238 33.333 0.00 0.00 44.19 4.09
3513 6353 9.833182 TGGTTTTTAAAAAGAAAATGTTTGCTC 57.167 25.926 13.58 0.00 0.00 4.26
3514 6354 9.619316 GTGGTTTTTAAAAAGAAAATGTTTGCT 57.381 25.926 13.58 0.00 0.00 3.91
3515 6355 8.855279 GGTGGTTTTTAAAAAGAAAATGTTTGC 58.145 29.630 13.58 0.00 0.00 3.68
3516 6356 9.347934 GGGTGGTTTTTAAAAAGAAAATGTTTG 57.652 29.630 13.58 0.00 0.00 2.93
3517 6357 8.237949 CGGGTGGTTTTTAAAAAGAAAATGTTT 58.762 29.630 13.58 0.00 0.00 2.83
3518 6358 7.390996 ACGGGTGGTTTTTAAAAAGAAAATGTT 59.609 29.630 13.58 0.00 0.00 2.71
3519 6359 6.879993 ACGGGTGGTTTTTAAAAAGAAAATGT 59.120 30.769 13.58 6.64 0.00 2.71
3520 6360 7.064728 TGACGGGTGGTTTTTAAAAAGAAAATG 59.935 33.333 13.58 6.08 0.00 2.32
3521 6361 7.104290 TGACGGGTGGTTTTTAAAAAGAAAAT 58.896 30.769 13.58 0.00 0.00 1.82
3522 6362 6.461640 TGACGGGTGGTTTTTAAAAAGAAAA 58.538 32.000 13.58 0.00 0.00 2.29
3523 6363 6.034161 TGACGGGTGGTTTTTAAAAAGAAA 57.966 33.333 13.58 0.27 0.00 2.52
3524 6364 5.656213 TGACGGGTGGTTTTTAAAAAGAA 57.344 34.783 13.58 2.69 0.00 2.52
3525 6365 5.185442 ACTTGACGGGTGGTTTTTAAAAAGA 59.815 36.000 13.58 1.28 0.00 2.52
3526 6366 5.289917 CACTTGACGGGTGGTTTTTAAAAAG 59.710 40.000 13.58 4.02 0.00 2.27
3527 6367 5.169295 CACTTGACGGGTGGTTTTTAAAAA 58.831 37.500 9.31 9.31 0.00 1.94
3528 6368 4.220163 ACACTTGACGGGTGGTTTTTAAAA 59.780 37.500 0.00 0.00 38.83 1.52
3529 6369 3.762823 ACACTTGACGGGTGGTTTTTAAA 59.237 39.130 0.00 0.00 38.83 1.52
3530 6370 3.354467 ACACTTGACGGGTGGTTTTTAA 58.646 40.909 0.00 0.00 38.83 1.52
3531 6371 3.002038 ACACTTGACGGGTGGTTTTTA 57.998 42.857 0.00 0.00 38.83 1.52
3532 6372 1.842052 ACACTTGACGGGTGGTTTTT 58.158 45.000 0.00 0.00 38.83 1.94
3533 6373 2.291365 GTACACTTGACGGGTGGTTTT 58.709 47.619 0.00 0.00 38.83 2.43
3534 6374 1.475571 GGTACACTTGACGGGTGGTTT 60.476 52.381 0.00 0.00 38.83 3.27
3535 6375 0.107268 GGTACACTTGACGGGTGGTT 59.893 55.000 0.00 0.00 38.83 3.67
3536 6376 1.750297 GGTACACTTGACGGGTGGT 59.250 57.895 0.00 0.00 38.83 4.16
3537 6377 1.004200 GGGTACACTTGACGGGTGG 60.004 63.158 0.00 0.00 38.83 4.61
3538 6378 0.320421 CTGGGTACACTTGACGGGTG 60.320 60.000 0.00 0.00 40.19 4.61
3539 6379 0.761702 ACTGGGTACACTTGACGGGT 60.762 55.000 0.00 0.00 0.00 5.28
3540 6380 0.037605 GACTGGGTACACTTGACGGG 60.038 60.000 0.00 0.00 0.00 5.28
3541 6381 0.966920 AGACTGGGTACACTTGACGG 59.033 55.000 0.00 0.00 0.00 4.79
3542 6382 1.611977 TCAGACTGGGTACACTTGACG 59.388 52.381 1.81 0.00 0.00 4.35
3543 6383 3.963428 ATCAGACTGGGTACACTTGAC 57.037 47.619 1.81 0.00 0.00 3.18
3544 6384 5.084519 ACTAATCAGACTGGGTACACTTGA 58.915 41.667 1.81 0.00 0.00 3.02
3545 6385 5.407407 ACTAATCAGACTGGGTACACTTG 57.593 43.478 1.81 0.00 0.00 3.16
3546 6386 5.421374 GGTACTAATCAGACTGGGTACACTT 59.579 44.000 19.69 0.00 33.47 3.16
3547 6387 4.954826 GGTACTAATCAGACTGGGTACACT 59.045 45.833 19.69 0.00 33.47 3.55
3548 6388 4.201990 CGGTACTAATCAGACTGGGTACAC 60.202 50.000 19.69 0.00 33.47 2.90
3549 6389 3.949754 CGGTACTAATCAGACTGGGTACA 59.050 47.826 19.69 0.00 33.47 2.90
3550 6390 3.243334 GCGGTACTAATCAGACTGGGTAC 60.243 52.174 1.81 10.41 0.00 3.34
3551 6391 2.954318 GCGGTACTAATCAGACTGGGTA 59.046 50.000 1.81 0.00 0.00 3.69
3552 6392 1.755380 GCGGTACTAATCAGACTGGGT 59.245 52.381 1.81 0.26 0.00 4.51
3553 6393 1.068741 GGCGGTACTAATCAGACTGGG 59.931 57.143 1.81 0.00 0.00 4.45
3554 6394 1.754803 TGGCGGTACTAATCAGACTGG 59.245 52.381 1.81 0.00 0.00 4.00
3555 6395 2.688446 TCTGGCGGTACTAATCAGACTG 59.312 50.000 0.00 0.00 30.58 3.51
3556 6396 3.014304 TCTGGCGGTACTAATCAGACT 57.986 47.619 0.00 0.00 30.58 3.24
3557 6397 4.323553 AATCTGGCGGTACTAATCAGAC 57.676 45.455 9.57 0.00 37.31 3.51
3558 6398 4.280174 GGTAATCTGGCGGTACTAATCAGA 59.720 45.833 9.72 9.72 38.59 3.27
3559 6399 4.557205 GGTAATCTGGCGGTACTAATCAG 58.443 47.826 0.00 0.00 0.00 2.90
3560 6400 3.322828 GGGTAATCTGGCGGTACTAATCA 59.677 47.826 0.00 0.00 0.00 2.57
3561 6401 3.306571 GGGGTAATCTGGCGGTACTAATC 60.307 52.174 0.00 0.00 0.00 1.75
3562 6402 2.636403 GGGGTAATCTGGCGGTACTAAT 59.364 50.000 0.00 0.00 0.00 1.73
3563 6403 2.041701 GGGGTAATCTGGCGGTACTAA 58.958 52.381 0.00 0.00 0.00 2.24
3564 6404 1.063038 TGGGGTAATCTGGCGGTACTA 60.063 52.381 0.00 0.00 0.00 1.82
3565 6405 0.325860 TGGGGTAATCTGGCGGTACT 60.326 55.000 0.00 0.00 0.00 2.73
3566 6406 0.179065 GTGGGGTAATCTGGCGGTAC 60.179 60.000 0.00 0.00 0.00 3.34
3567 6407 0.325860 AGTGGGGTAATCTGGCGGTA 60.326 55.000 0.00 0.00 0.00 4.02
3568 6408 1.205460 AAGTGGGGTAATCTGGCGGT 61.205 55.000 0.00 0.00 0.00 5.68
3569 6409 0.834612 TAAGTGGGGTAATCTGGCGG 59.165 55.000 0.00 0.00 0.00 6.13
3570 6410 1.485066 ACTAAGTGGGGTAATCTGGCG 59.515 52.381 0.00 0.00 0.00 5.69
3571 6411 3.646736 AACTAAGTGGGGTAATCTGGC 57.353 47.619 0.00 0.00 0.00 4.85
3572 6412 4.409247 AGCTAACTAAGTGGGGTAATCTGG 59.591 45.833 0.00 0.00 0.00 3.86
3573 6413 5.364157 AGAGCTAACTAAGTGGGGTAATCTG 59.636 44.000 0.00 0.00 0.00 2.90
3574 6414 5.530243 AGAGCTAACTAAGTGGGGTAATCT 58.470 41.667 0.00 0.00 0.00 2.40
3575 6415 5.873146 AGAGCTAACTAAGTGGGGTAATC 57.127 43.478 0.00 0.00 0.00 1.75
3576 6416 7.202102 CCATTAGAGCTAACTAAGTGGGGTAAT 60.202 40.741 11.66 0.00 36.11 1.89
3577 6417 6.099269 CCATTAGAGCTAACTAAGTGGGGTAA 59.901 42.308 11.66 0.00 36.11 2.85
3578 6418 5.601313 CCATTAGAGCTAACTAAGTGGGGTA 59.399 44.000 11.66 0.00 36.11 3.69
3579 6419 4.409247 CCATTAGAGCTAACTAAGTGGGGT 59.591 45.833 11.66 0.00 36.11 4.95
3580 6420 4.743955 GCCATTAGAGCTAACTAAGTGGGG 60.744 50.000 16.54 10.32 36.11 4.96
3581 6421 4.101741 AGCCATTAGAGCTAACTAAGTGGG 59.898 45.833 16.54 11.85 39.29 4.61
3582 6422 5.283457 AGCCATTAGAGCTAACTAAGTGG 57.717 43.478 13.52 13.52 39.29 4.00
3583 6423 4.979197 CGAGCCATTAGAGCTAACTAAGTG 59.021 45.833 0.00 0.00 41.75 3.16
3584 6424 4.038162 CCGAGCCATTAGAGCTAACTAAGT 59.962 45.833 0.00 0.00 41.75 2.24
3585 6425 4.278669 TCCGAGCCATTAGAGCTAACTAAG 59.721 45.833 0.00 0.00 41.75 2.18
3586 6426 4.212716 TCCGAGCCATTAGAGCTAACTAA 58.787 43.478 0.00 0.00 41.75 2.24
3587 6427 3.828921 TCCGAGCCATTAGAGCTAACTA 58.171 45.455 0.00 0.00 41.75 2.24
3588 6428 2.667470 TCCGAGCCATTAGAGCTAACT 58.333 47.619 0.00 0.00 41.75 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.