Multiple sequence alignment - TraesCS6A01G023300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G023300 chr6A 100.000 4971 0 0 1 4971 11591909 11586939 0.000000e+00 9180.0
1 TraesCS6A01G023300 chr6A 86.850 1308 151 11 1145 2437 11571474 11570173 0.000000e+00 1443.0
2 TraesCS6A01G023300 chr6A 82.168 987 147 13 3131 4097 11569653 11568676 0.000000e+00 821.0
3 TraesCS6A01G023300 chr6A 94.382 445 24 1 1 445 60382434 60381991 0.000000e+00 682.0
4 TraesCS6A01G023300 chr6A 94.157 445 26 0 1 445 2366846 2367290 0.000000e+00 678.0
5 TraesCS6A01G023300 chr6A 83.089 751 121 5 3248 3994 11555664 11554916 0.000000e+00 678.0
6 TraesCS6A01G023300 chr6A 83.151 457 58 14 999 1444 11557977 11557529 2.790000e-107 399.0
7 TraesCS6A01G023300 chr6A 83.099 142 22 2 2593 2732 11570038 11569897 1.450000e-25 128.0
8 TraesCS6A01G023300 chr6A 76.829 246 36 13 2501 2730 11556299 11556059 8.740000e-23 119.0
9 TraesCS6A01G023300 chr6A 87.879 66 3 2 4613 4674 256473625 256473689 6.900000e-09 73.1
10 TraesCS6A01G023300 chr6A 92.500 40 3 0 624 663 349934668 349934629 1.930000e-04 58.4
11 TraesCS6A01G023300 chr6B 91.499 2082 134 19 2911 4971 18731129 18729070 0.000000e+00 2824.0
12 TraesCS6A01G023300 chr6B 88.278 2201 197 29 719 2900 18592858 18595016 0.000000e+00 2579.0
13 TraesCS6A01G023300 chr6B 89.581 1910 163 21 658 2555 18734713 18732828 0.000000e+00 2392.0
14 TraesCS6A01G023300 chr6B 92.313 1574 104 10 2911 4472 18595062 18596630 0.000000e+00 2220.0
15 TraesCS6A01G023300 chr6B 87.423 1304 146 15 1145 2437 18658730 18657434 0.000000e+00 1483.0
16 TraesCS6A01G023300 chr6B 81.687 1802 243 53 999 2730 18648594 18646810 0.000000e+00 1419.0
17 TraesCS6A01G023300 chr6B 85.132 834 116 7 3246 4076 18656758 18655930 0.000000e+00 846.0
18 TraesCS6A01G023300 chr6B 94.105 475 21 4 4503 4971 18596626 18597099 0.000000e+00 715.0
19 TraesCS6A01G023300 chr6B 82.810 733 119 6 3256 3985 18646409 18645681 0.000000e+00 649.0
20 TraesCS6A01G023300 chr6B 92.562 121 9 0 2780 2900 18731295 18731175 1.840000e-39 174.0
21 TraesCS6A01G023300 chr6B 83.784 111 10 5 2647 2750 18731397 18731288 1.140000e-16 99.0
22 TraesCS6A01G023300 chr6D 87.885 2080 195 30 500 2559 10104709 10102667 0.000000e+00 2392.0
23 TraesCS6A01G023300 chr6D 92.401 1408 81 11 2991 4383 10102286 10100890 0.000000e+00 1984.0
24 TraesCS6A01G023300 chr6D 82.417 1746 221 52 745 2437 10069357 10067645 0.000000e+00 1445.0
25 TraesCS6A01G023300 chr6D 92.453 848 63 1 3383 4230 10099167 10098321 0.000000e+00 1210.0
26 TraesCS6A01G023300 chr6D 89.818 933 93 2 1505 2436 10121787 10120856 0.000000e+00 1195.0
27 TraesCS6A01G023300 chr6D 89.485 913 88 8 3238 4148 10119933 10119027 0.000000e+00 1147.0
28 TraesCS6A01G023300 chr6D 87.866 923 112 0 1514 2436 10045583 10044661 0.000000e+00 1085.0
29 TraesCS6A01G023300 chr6D 89.182 721 61 6 754 1464 10122591 10121878 0.000000e+00 883.0
30 TraesCS6A01G023300 chr6D 95.486 288 9 2 4688 4971 10100893 10100606 1.630000e-124 457.0
31 TraesCS6A01G023300 chr6D 83.114 456 60 14 999 1444 10046125 10045677 2.790000e-107 399.0
32 TraesCS6A01G023300 chr6D 86.218 312 13 13 456 767 10124353 10124072 1.340000e-80 311.0
33 TraesCS6A01G023300 chr6D 86.742 264 28 4 2589 2845 10102672 10102409 2.260000e-73 287.0
34 TraesCS6A01G023300 chr6D 75.962 312 50 16 2436 2730 10044606 10044303 2.410000e-28 137.0
35 TraesCS6A01G023300 chr2A 95.506 445 20 0 1 445 608413597 608414041 0.000000e+00 712.0
36 TraesCS6A01G023300 chr2A 95.056 445 21 1 2 446 23881376 23881819 0.000000e+00 699.0
37 TraesCS6A01G023300 chr3A 95.281 445 21 0 1 445 60001887 60001443 0.000000e+00 706.0
38 TraesCS6A01G023300 chr3A 94.831 445 22 1 1 445 725066917 725067360 0.000000e+00 693.0
39 TraesCS6A01G023300 chr3A 94.607 445 23 1 1 445 709445091 709444648 0.000000e+00 688.0
40 TraesCS6A01G023300 chr7A 94.820 444 23 0 2 445 12228532 12228975 0.000000e+00 693.0
41 TraesCS6A01G023300 chr5A 94.407 447 25 0 1 447 150012041 150012487 0.000000e+00 688.0
42 TraesCS6A01G023300 chr5A 87.671 73 5 3 4613 4683 236879254 236879324 1.150000e-11 82.4
43 TraesCS6A01G023300 chr7D 93.651 63 3 1 4612 4674 459786339 459786400 5.300000e-15 93.5
44 TraesCS6A01G023300 chrUn 90.323 62 5 1 4613 4674 115400308 115400248 4.130000e-11 80.5
45 TraesCS6A01G023300 chr5B 90.323 62 5 1 4613 4674 214942884 214942944 4.130000e-11 80.5
46 TraesCS6A01G023300 chr1D 89.231 65 5 2 4613 4677 343363380 343363442 4.130000e-11 80.5
47 TraesCS6A01G023300 chr4B 88.889 63 6 1 4613 4674 28165840 28165902 5.340000e-10 76.8
48 TraesCS6A01G023300 chr2D 100.000 29 0 0 630 658 398306683 398306655 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G023300 chr6A 11586939 11591909 4970 True 9180.000000 9180 100.000000 1 4971 1 chr6A.!!$R1 4970
1 TraesCS6A01G023300 chr6A 11568676 11571474 2798 True 797.333333 1443 84.039000 1145 4097 3 chr6A.!!$R5 2952
2 TraesCS6A01G023300 chr6A 11554916 11557977 3061 True 398.666667 678 81.023000 999 3994 3 chr6A.!!$R4 2995
3 TraesCS6A01G023300 chr6B 18592858 18597099 4241 False 1838.000000 2579 91.565333 719 4971 3 chr6B.!!$F1 4252
4 TraesCS6A01G023300 chr6B 18729070 18734713 5643 True 1372.250000 2824 89.356500 658 4971 4 chr6B.!!$R3 4313
5 TraesCS6A01G023300 chr6B 18655930 18658730 2800 True 1164.500000 1483 86.277500 1145 4076 2 chr6B.!!$R2 2931
6 TraesCS6A01G023300 chr6B 18645681 18648594 2913 True 1034.000000 1419 82.248500 999 3985 2 chr6B.!!$R1 2986
7 TraesCS6A01G023300 chr6D 10067645 10069357 1712 True 1445.000000 1445 82.417000 745 2437 1 chr6D.!!$R1 1692
8 TraesCS6A01G023300 chr6D 10098321 10104709 6388 True 1266.000000 2392 90.993400 500 4971 5 chr6D.!!$R3 4471
9 TraesCS6A01G023300 chr6D 10119027 10124353 5326 True 884.000000 1195 88.675750 456 4148 4 chr6D.!!$R4 3692
10 TraesCS6A01G023300 chr6D 10044303 10046125 1822 True 540.333333 1085 82.314000 999 2730 3 chr6D.!!$R2 1731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.033503 AAACCTAAATCCCCCAGCCG 60.034 55.0 0.00 0.00 0.00 5.52 F
401 402 0.037590 TTCTCGTGGGGATGGGTTTG 59.962 55.0 0.00 0.00 0.00 2.93 F
413 414 0.107459 TGGGTTTGGGCAAGCAAAAC 60.107 50.0 11.77 11.77 34.23 2.43 F
463 464 0.108585 ACCCATGAGCGTTTGAGTGT 59.891 50.0 0.00 0.00 0.00 3.55 F
648 664 0.249996 GACAACTTTTCCCGGACGGA 60.250 55.0 13.13 0.00 39.68 4.69 F
649 665 0.250166 ACAACTTTTCCCGGACGGAG 60.250 55.0 13.13 3.95 43.39 4.63 F
2568 4840 0.657840 CGTCGGAATGATTGAAGGGC 59.342 55.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 3473 0.690192 TGATGAGCAAAGGGTCGGAA 59.310 50.000 0.0 0.0 44.47 4.30 R
1920 3590 1.153289 GAGCCGCCATGTGTCATCT 60.153 57.895 0.0 0.0 0.00 2.90 R
2545 4407 3.517602 CCTTCAATCATTCCGACGTGTA 58.482 45.455 0.0 0.0 0.00 2.90 R
2581 4853 0.037139 TCATTTGCAAGCCCATGTGC 60.037 50.000 0.0 0.0 41.29 4.57 R
2735 6412 1.066716 ACACATCCACAATGGCATTGC 60.067 47.619 33.9 0.0 43.98 3.56 R
2750 6543 4.677779 GCAGAGTTTGTTTGTTGGACACAT 60.678 41.667 0.0 0.0 34.43 3.21 R
4326 8534 0.178301 TGAACTGTGTTGTGGCCGTA 59.822 50.000 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.212213 CGACAAAACCCGTCAAAATACA 57.788 40.909 0.00 0.00 32.72 2.29
22 23 4.789784 CGACAAAACCCGTCAAAATACAT 58.210 39.130 0.00 0.00 32.72 2.29
23 24 5.216648 CGACAAAACCCGTCAAAATACATT 58.783 37.500 0.00 0.00 32.72 2.71
24 25 6.372185 CGACAAAACCCGTCAAAATACATTA 58.628 36.000 0.00 0.00 32.72 1.90
25 26 7.024768 CGACAAAACCCGTCAAAATACATTAT 58.975 34.615 0.00 0.00 32.72 1.28
26 27 7.539366 CGACAAAACCCGTCAAAATACATTATT 59.461 33.333 0.00 0.00 32.72 1.40
27 28 9.198837 GACAAAACCCGTCAAAATACATTATTT 57.801 29.630 0.00 0.00 39.92 1.40
30 31 8.920509 AAACCCGTCAAAATACATTATTTAGC 57.079 30.769 0.00 0.00 37.39 3.09
31 32 7.633193 ACCCGTCAAAATACATTATTTAGCA 57.367 32.000 0.00 0.00 37.39 3.49
32 33 8.232913 ACCCGTCAAAATACATTATTTAGCAT 57.767 30.769 0.00 0.00 37.39 3.79
33 34 8.134895 ACCCGTCAAAATACATTATTTAGCATG 58.865 33.333 0.00 0.00 37.39 4.06
34 35 7.114811 CCCGTCAAAATACATTATTTAGCATGC 59.885 37.037 10.51 10.51 37.39 4.06
35 36 7.647318 CCGTCAAAATACATTATTTAGCATGCA 59.353 33.333 21.98 2.77 37.39 3.96
36 37 8.471457 CGTCAAAATACATTATTTAGCATGCAC 58.529 33.333 21.98 1.14 37.39 4.57
37 38 8.755018 GTCAAAATACATTATTTAGCATGCACC 58.245 33.333 21.98 0.00 37.39 5.01
38 39 7.647318 TCAAAATACATTATTTAGCATGCACCG 59.353 33.333 21.98 1.51 37.39 4.94
39 40 6.875948 AATACATTATTTAGCATGCACCGA 57.124 33.333 21.98 2.80 0.00 4.69
40 41 7.452880 AATACATTATTTAGCATGCACCGAT 57.547 32.000 21.98 10.43 0.00 4.18
41 42 5.362556 ACATTATTTAGCATGCACCGATC 57.637 39.130 21.98 0.00 0.00 3.69
42 43 4.216257 ACATTATTTAGCATGCACCGATCC 59.784 41.667 21.98 0.00 0.00 3.36
43 44 2.346766 ATTTAGCATGCACCGATCCA 57.653 45.000 21.98 0.00 0.00 3.41
44 45 2.346766 TTTAGCATGCACCGATCCAT 57.653 45.000 21.98 0.00 0.00 3.41
45 46 1.882912 TTAGCATGCACCGATCCATC 58.117 50.000 21.98 0.00 0.00 3.51
46 47 1.051008 TAGCATGCACCGATCCATCT 58.949 50.000 21.98 0.00 0.00 2.90
47 48 0.182061 AGCATGCACCGATCCATCTT 59.818 50.000 21.98 0.00 0.00 2.40
48 49 0.309922 GCATGCACCGATCCATCTTG 59.690 55.000 14.21 0.00 0.00 3.02
49 50 1.957668 CATGCACCGATCCATCTTGA 58.042 50.000 0.00 0.00 0.00 3.02
50 51 1.600957 CATGCACCGATCCATCTTGAC 59.399 52.381 0.00 0.00 0.00 3.18
51 52 0.904649 TGCACCGATCCATCTTGACT 59.095 50.000 0.00 0.00 0.00 3.41
52 53 1.134699 TGCACCGATCCATCTTGACTC 60.135 52.381 0.00 0.00 0.00 3.36
53 54 1.134699 GCACCGATCCATCTTGACTCA 60.135 52.381 0.00 0.00 0.00 3.41
54 55 2.677902 GCACCGATCCATCTTGACTCAA 60.678 50.000 0.00 0.00 0.00 3.02
55 56 3.193263 CACCGATCCATCTTGACTCAAG 58.807 50.000 12.02 12.02 42.25 3.02
56 57 2.834549 ACCGATCCATCTTGACTCAAGT 59.165 45.455 16.75 3.93 41.66 3.16
57 58 3.193263 CCGATCCATCTTGACTCAAGTG 58.807 50.000 16.75 13.73 41.66 3.16
58 59 3.193263 CGATCCATCTTGACTCAAGTGG 58.807 50.000 22.25 22.25 41.66 4.00
59 60 2.479566 TCCATCTTGACTCAAGTGGC 57.520 50.000 22.87 0.00 41.66 5.01
60 61 1.003580 TCCATCTTGACTCAAGTGGCC 59.996 52.381 22.87 0.00 41.66 5.36
61 62 1.457346 CATCTTGACTCAAGTGGCCC 58.543 55.000 16.75 0.00 41.66 5.80
62 63 1.067295 ATCTTGACTCAAGTGGCCCA 58.933 50.000 16.75 0.00 41.66 5.36
63 64 0.843309 TCTTGACTCAAGTGGCCCAA 59.157 50.000 16.75 0.00 41.66 4.12
64 65 1.214175 TCTTGACTCAAGTGGCCCAAA 59.786 47.619 16.75 0.00 41.66 3.28
65 66 1.610522 CTTGACTCAAGTGGCCCAAAG 59.389 52.381 10.27 0.00 36.79 2.77
66 67 0.823356 TGACTCAAGTGGCCCAAAGC 60.823 55.000 0.00 0.00 42.60 3.51
75 76 3.994853 GCCCAAAGCCACACTGCC 61.995 66.667 0.00 0.00 34.35 4.85
76 77 3.305516 CCCAAAGCCACACTGCCC 61.306 66.667 0.00 0.00 0.00 5.36
77 78 3.673484 CCAAAGCCACACTGCCCG 61.673 66.667 0.00 0.00 0.00 6.13
78 79 2.594303 CAAAGCCACACTGCCCGA 60.594 61.111 0.00 0.00 0.00 5.14
79 80 2.281761 AAAGCCACACTGCCCGAG 60.282 61.111 0.00 0.00 0.00 4.63
102 103 4.803426 GAGCCCCACAGCGTCGAG 62.803 72.222 0.00 0.00 38.01 4.04
108 109 3.449227 CACAGCGTCGAGGCCCTA 61.449 66.667 25.27 0.00 0.00 3.53
109 110 3.141488 ACAGCGTCGAGGCCCTAG 61.141 66.667 25.27 15.40 0.00 3.02
110 111 2.829003 CAGCGTCGAGGCCCTAGA 60.829 66.667 25.27 0.00 0.00 2.43
111 112 2.517402 AGCGTCGAGGCCCTAGAG 60.517 66.667 25.27 0.00 0.00 2.43
112 113 2.829458 GCGTCGAGGCCCTAGAGT 60.829 66.667 19.08 0.00 0.00 3.24
113 114 1.525535 GCGTCGAGGCCCTAGAGTA 60.526 63.158 19.08 0.00 0.00 2.59
114 115 1.784036 GCGTCGAGGCCCTAGAGTAC 61.784 65.000 19.08 0.00 0.00 2.73
115 116 0.463295 CGTCGAGGCCCTAGAGTACA 60.463 60.000 0.00 0.00 0.00 2.90
116 117 1.760192 GTCGAGGCCCTAGAGTACAA 58.240 55.000 0.00 0.00 0.00 2.41
117 118 2.097825 GTCGAGGCCCTAGAGTACAAA 58.902 52.381 0.00 0.00 0.00 2.83
118 119 2.097825 TCGAGGCCCTAGAGTACAAAC 58.902 52.381 0.00 0.00 0.00 2.93
119 120 1.822990 CGAGGCCCTAGAGTACAAACA 59.177 52.381 0.00 0.00 0.00 2.83
120 121 2.232941 CGAGGCCCTAGAGTACAAACAA 59.767 50.000 0.00 0.00 0.00 2.83
121 122 3.306502 CGAGGCCCTAGAGTACAAACAAA 60.307 47.826 0.00 0.00 0.00 2.83
122 123 4.001652 GAGGCCCTAGAGTACAAACAAAC 58.998 47.826 0.00 0.00 0.00 2.93
123 124 3.079578 GGCCCTAGAGTACAAACAAACC 58.920 50.000 0.00 0.00 0.00 3.27
124 125 3.079578 GCCCTAGAGTACAAACAAACCC 58.920 50.000 0.00 0.00 0.00 4.11
125 126 3.682696 CCCTAGAGTACAAACAAACCCC 58.317 50.000 0.00 0.00 0.00 4.95
126 127 3.329814 CCCTAGAGTACAAACAAACCCCT 59.670 47.826 0.00 0.00 0.00 4.79
127 128 4.565028 CCCTAGAGTACAAACAAACCCCTC 60.565 50.000 0.00 0.00 0.00 4.30
128 129 3.121738 AGAGTACAAACAAACCCCTCG 57.878 47.619 0.00 0.00 0.00 4.63
129 130 1.534163 GAGTACAAACAAACCCCTCGC 59.466 52.381 0.00 0.00 0.00 5.03
130 131 1.142262 AGTACAAACAAACCCCTCGCT 59.858 47.619 0.00 0.00 0.00 4.93
131 132 1.534163 GTACAAACAAACCCCTCGCTC 59.466 52.381 0.00 0.00 0.00 5.03
132 133 1.164041 ACAAACAAACCCCTCGCTCG 61.164 55.000 0.00 0.00 0.00 5.03
133 134 1.599797 AAACAAACCCCTCGCTCGG 60.600 57.895 0.00 0.00 0.00 4.63
134 135 2.333701 AAACAAACCCCTCGCTCGGT 62.334 55.000 0.00 0.00 0.00 4.69
135 136 2.434359 CAAACCCCTCGCTCGGTC 60.434 66.667 0.00 0.00 0.00 4.79
136 137 4.065281 AAACCCCTCGCTCGGTCG 62.065 66.667 0.00 0.00 0.00 4.79
146 147 2.356313 CTCGGTCGCTGCAGTGTT 60.356 61.111 25.68 0.00 0.00 3.32
147 148 2.661537 TCGGTCGCTGCAGTGTTG 60.662 61.111 25.68 16.42 0.00 3.33
156 157 3.647824 GCAGTGTTGCTCGCTCTT 58.352 55.556 0.00 0.00 46.95 2.85
157 158 1.944778 GCAGTGTTGCTCGCTCTTT 59.055 52.632 0.00 0.00 46.95 2.52
158 159 1.148310 GCAGTGTTGCTCGCTCTTTA 58.852 50.000 0.00 0.00 46.95 1.85
159 160 1.127582 GCAGTGTTGCTCGCTCTTTAG 59.872 52.381 0.00 0.00 46.95 1.85
160 161 1.728971 CAGTGTTGCTCGCTCTTTAGG 59.271 52.381 0.00 0.00 34.33 2.69
161 162 1.618837 AGTGTTGCTCGCTCTTTAGGA 59.381 47.619 0.00 0.00 30.20 2.94
162 163 1.727335 GTGTTGCTCGCTCTTTAGGAC 59.273 52.381 0.00 0.00 0.00 3.85
163 164 1.618837 TGTTGCTCGCTCTTTAGGACT 59.381 47.619 0.00 0.00 0.00 3.85
164 165 2.263945 GTTGCTCGCTCTTTAGGACTC 58.736 52.381 0.00 0.00 0.00 3.36
165 166 1.840737 TGCTCGCTCTTTAGGACTCT 58.159 50.000 0.00 0.00 0.00 3.24
166 167 1.746220 TGCTCGCTCTTTAGGACTCTC 59.254 52.381 0.00 0.00 0.00 3.20
167 168 2.021457 GCTCGCTCTTTAGGACTCTCT 58.979 52.381 0.00 0.00 0.00 3.10
168 169 2.032924 GCTCGCTCTTTAGGACTCTCTC 59.967 54.545 0.00 0.00 0.00 3.20
169 170 3.541632 CTCGCTCTTTAGGACTCTCTCT 58.458 50.000 0.00 0.00 0.00 3.10
170 171 3.537580 TCGCTCTTTAGGACTCTCTCTC 58.462 50.000 0.00 0.00 0.00 3.20
171 172 2.616842 CGCTCTTTAGGACTCTCTCTCC 59.383 54.545 0.00 0.00 0.00 3.71
172 173 2.956333 GCTCTTTAGGACTCTCTCTCCC 59.044 54.545 0.00 0.00 0.00 4.30
173 174 3.211045 CTCTTTAGGACTCTCTCTCCCG 58.789 54.545 0.00 0.00 0.00 5.14
174 175 1.679153 CTTTAGGACTCTCTCTCCCGC 59.321 57.143 0.00 0.00 0.00 6.13
175 176 0.624254 TTAGGACTCTCTCTCCCGCA 59.376 55.000 0.00 0.00 0.00 5.69
176 177 0.107116 TAGGACTCTCTCTCCCGCAC 60.107 60.000 0.00 0.00 0.00 5.34
177 178 1.679305 GGACTCTCTCTCCCGCACA 60.679 63.158 0.00 0.00 0.00 4.57
178 179 1.251527 GGACTCTCTCTCCCGCACAA 61.252 60.000 0.00 0.00 0.00 3.33
179 180 0.109039 GACTCTCTCTCCCGCACAAC 60.109 60.000 0.00 0.00 0.00 3.32
180 181 0.827925 ACTCTCTCTCCCGCACAACA 60.828 55.000 0.00 0.00 0.00 3.33
181 182 0.389166 CTCTCTCTCCCGCACAACAC 60.389 60.000 0.00 0.00 0.00 3.32
182 183 1.734477 CTCTCTCCCGCACAACACG 60.734 63.158 0.00 0.00 0.00 4.49
183 184 2.142357 CTCTCTCCCGCACAACACGA 62.142 60.000 0.00 0.00 0.00 4.35
184 185 2.022129 CTCTCCCGCACAACACGAC 61.022 63.158 0.00 0.00 0.00 4.34
185 186 2.279851 CTCCCGCACAACACGACA 60.280 61.111 0.00 0.00 0.00 4.35
186 187 2.586635 TCCCGCACAACACGACAC 60.587 61.111 0.00 0.00 0.00 3.67
187 188 3.645975 CCCGCACAACACGACACC 61.646 66.667 0.00 0.00 0.00 4.16
188 189 2.587753 CCGCACAACACGACACCT 60.588 61.111 0.00 0.00 0.00 4.00
189 190 1.300311 CCGCACAACACGACACCTA 60.300 57.895 0.00 0.00 0.00 3.08
190 191 0.876777 CCGCACAACACGACACCTAA 60.877 55.000 0.00 0.00 0.00 2.69
191 192 0.931702 CGCACAACACGACACCTAAA 59.068 50.000 0.00 0.00 0.00 1.85
192 193 1.332552 CGCACAACACGACACCTAAAC 60.333 52.381 0.00 0.00 0.00 2.01
193 194 1.003223 GCACAACACGACACCTAAACC 60.003 52.381 0.00 0.00 0.00 3.27
194 195 2.557317 CACAACACGACACCTAAACCT 58.443 47.619 0.00 0.00 0.00 3.50
195 196 3.719924 CACAACACGACACCTAAACCTA 58.280 45.455 0.00 0.00 0.00 3.08
196 197 4.121317 CACAACACGACACCTAAACCTAA 58.879 43.478 0.00 0.00 0.00 2.69
197 198 4.571580 CACAACACGACACCTAAACCTAAA 59.428 41.667 0.00 0.00 0.00 1.85
198 199 4.571984 ACAACACGACACCTAAACCTAAAC 59.428 41.667 0.00 0.00 0.00 2.01
199 200 3.732212 ACACGACACCTAAACCTAAACC 58.268 45.455 0.00 0.00 0.00 3.27
200 201 3.389002 ACACGACACCTAAACCTAAACCT 59.611 43.478 0.00 0.00 0.00 3.50
201 202 4.588528 ACACGACACCTAAACCTAAACCTA 59.411 41.667 0.00 0.00 0.00 3.08
202 203 5.070313 ACACGACACCTAAACCTAAACCTAA 59.930 40.000 0.00 0.00 0.00 2.69
203 204 5.990996 CACGACACCTAAACCTAAACCTAAA 59.009 40.000 0.00 0.00 0.00 1.85
204 205 6.652062 CACGACACCTAAACCTAAACCTAAAT 59.348 38.462 0.00 0.00 0.00 1.40
205 206 6.875726 ACGACACCTAAACCTAAACCTAAATC 59.124 38.462 0.00 0.00 0.00 2.17
206 207 6.314648 CGACACCTAAACCTAAACCTAAATCC 59.685 42.308 0.00 0.00 0.00 3.01
207 208 6.487828 ACACCTAAACCTAAACCTAAATCCC 58.512 40.000 0.00 0.00 0.00 3.85
208 209 5.889853 CACCTAAACCTAAACCTAAATCCCC 59.110 44.000 0.00 0.00 0.00 4.81
209 210 5.043881 ACCTAAACCTAAACCTAAATCCCCC 60.044 44.000 0.00 0.00 0.00 5.40
210 211 5.043956 CCTAAACCTAAACCTAAATCCCCCA 60.044 44.000 0.00 0.00 0.00 4.96
211 212 4.603094 AACCTAAACCTAAATCCCCCAG 57.397 45.455 0.00 0.00 0.00 4.45
212 213 2.243994 ACCTAAACCTAAATCCCCCAGC 59.756 50.000 0.00 0.00 0.00 4.85
213 214 2.424379 CCTAAACCTAAATCCCCCAGCC 60.424 54.545 0.00 0.00 0.00 4.85
214 215 0.033503 AAACCTAAATCCCCCAGCCG 60.034 55.000 0.00 0.00 0.00 5.52
215 216 1.212250 AACCTAAATCCCCCAGCCGT 61.212 55.000 0.00 0.00 0.00 5.68
216 217 1.148498 CCTAAATCCCCCAGCCGTC 59.852 63.158 0.00 0.00 0.00 4.79
217 218 1.227556 CTAAATCCCCCAGCCGTCG 60.228 63.158 0.00 0.00 0.00 5.12
218 219 3.394635 TAAATCCCCCAGCCGTCGC 62.395 63.158 0.00 0.00 0.00 5.19
229 230 4.435436 CCGTCGCCTGCTGCTGTA 62.435 66.667 0.00 0.00 38.05 2.74
230 231 2.432456 CGTCGCCTGCTGCTGTAA 60.432 61.111 0.00 0.00 38.05 2.41
231 232 1.811266 CGTCGCCTGCTGCTGTAAT 60.811 57.895 0.00 0.00 38.05 1.89
232 233 0.527600 CGTCGCCTGCTGCTGTAATA 60.528 55.000 0.00 0.00 38.05 0.98
233 234 1.869754 CGTCGCCTGCTGCTGTAATAT 60.870 52.381 0.00 0.00 38.05 1.28
234 235 1.528586 GTCGCCTGCTGCTGTAATATG 59.471 52.381 0.00 0.00 38.05 1.78
235 236 0.236711 CGCCTGCTGCTGTAATATGC 59.763 55.000 0.00 0.00 38.05 3.14
236 237 1.602311 GCCTGCTGCTGTAATATGCT 58.398 50.000 0.00 0.00 36.87 3.79
237 238 1.534595 GCCTGCTGCTGTAATATGCTC 59.465 52.381 0.00 0.00 36.87 4.26
238 239 2.149578 CCTGCTGCTGTAATATGCTCC 58.850 52.381 0.00 0.00 0.00 4.70
239 240 2.224475 CCTGCTGCTGTAATATGCTCCT 60.224 50.000 0.00 0.00 0.00 3.69
240 241 2.806818 CTGCTGCTGTAATATGCTCCTG 59.193 50.000 0.00 0.00 0.00 3.86
241 242 2.171237 TGCTGCTGTAATATGCTCCTGT 59.829 45.455 0.00 0.00 0.00 4.00
242 243 3.209410 GCTGCTGTAATATGCTCCTGTT 58.791 45.455 0.00 0.00 0.00 3.16
243 244 3.629398 GCTGCTGTAATATGCTCCTGTTT 59.371 43.478 0.00 0.00 0.00 2.83
244 245 4.096984 GCTGCTGTAATATGCTCCTGTTTT 59.903 41.667 0.00 0.00 0.00 2.43
245 246 5.393461 GCTGCTGTAATATGCTCCTGTTTTT 60.393 40.000 0.00 0.00 0.00 1.94
246 247 6.194796 TGCTGTAATATGCTCCTGTTTTTC 57.805 37.500 0.00 0.00 0.00 2.29
247 248 5.945784 TGCTGTAATATGCTCCTGTTTTTCT 59.054 36.000 0.00 0.00 0.00 2.52
248 249 6.434028 TGCTGTAATATGCTCCTGTTTTTCTT 59.566 34.615 0.00 0.00 0.00 2.52
249 250 6.969473 GCTGTAATATGCTCCTGTTTTTCTTC 59.031 38.462 0.00 0.00 0.00 2.87
250 251 7.391148 TGTAATATGCTCCTGTTTTTCTTCC 57.609 36.000 0.00 0.00 0.00 3.46
251 252 6.945435 TGTAATATGCTCCTGTTTTTCTTCCA 59.055 34.615 0.00 0.00 0.00 3.53
252 253 6.916360 AATATGCTCCTGTTTTTCTTCCAA 57.084 33.333 0.00 0.00 0.00 3.53
253 254 6.916360 ATATGCTCCTGTTTTTCTTCCAAA 57.084 33.333 0.00 0.00 0.00 3.28
254 255 5.813513 ATGCTCCTGTTTTTCTTCCAAAT 57.186 34.783 0.00 0.00 0.00 2.32
255 256 4.947645 TGCTCCTGTTTTTCTTCCAAATG 58.052 39.130 0.00 0.00 0.00 2.32
256 257 4.405358 TGCTCCTGTTTTTCTTCCAAATGT 59.595 37.500 0.00 0.00 0.00 2.71
257 258 5.104982 TGCTCCTGTTTTTCTTCCAAATGTT 60.105 36.000 0.00 0.00 0.00 2.71
258 259 5.234972 GCTCCTGTTTTTCTTCCAAATGTTG 59.765 40.000 0.00 0.00 0.00 3.33
259 260 6.293004 TCCTGTTTTTCTTCCAAATGTTGT 57.707 33.333 0.00 0.00 0.00 3.32
260 261 6.706295 TCCTGTTTTTCTTCCAAATGTTGTT 58.294 32.000 0.00 0.00 0.00 2.83
261 262 6.593382 TCCTGTTTTTCTTCCAAATGTTGTTG 59.407 34.615 0.00 0.00 0.00 3.33
262 263 6.371271 CCTGTTTTTCTTCCAAATGTTGTTGT 59.629 34.615 0.00 0.00 0.00 3.32
263 264 7.094848 CCTGTTTTTCTTCCAAATGTTGTTGTT 60.095 33.333 0.00 0.00 0.00 2.83
264 265 8.159344 TGTTTTTCTTCCAAATGTTGTTGTTT 57.841 26.923 0.00 0.00 0.00 2.83
265 266 8.624776 TGTTTTTCTTCCAAATGTTGTTGTTTT 58.375 25.926 0.00 0.00 0.00 2.43
266 267 9.457110 GTTTTTCTTCCAAATGTTGTTGTTTTT 57.543 25.926 0.00 0.00 0.00 1.94
283 284 2.714259 TTTTTGACTGCTCGTGGGG 58.286 52.632 0.00 0.00 0.00 4.96
284 285 0.181587 TTTTTGACTGCTCGTGGGGA 59.818 50.000 0.00 0.00 0.00 4.81
285 286 0.534203 TTTTGACTGCTCGTGGGGAC 60.534 55.000 0.00 0.00 0.00 4.46
286 287 2.709125 TTTGACTGCTCGTGGGGACG 62.709 60.000 0.00 0.00 0.00 4.79
287 288 4.436998 GACTGCTCGTGGGGACGG 62.437 72.222 0.00 0.00 0.00 4.79
291 292 4.754667 GCTCGTGGGGACGGGTTC 62.755 72.222 0.00 0.00 35.75 3.62
292 293 4.078516 CTCGTGGGGACGGGTTCC 62.079 72.222 0.00 0.00 45.00 3.62
303 304 2.199257 GGGTTCCCCGTGGGTTTT 59.801 61.111 3.83 0.00 44.74 2.43
304 305 2.204461 GGGTTCCCCGTGGGTTTTG 61.204 63.158 3.83 0.00 44.74 2.44
305 306 1.152715 GGTTCCCCGTGGGTTTTGA 60.153 57.895 3.83 0.00 44.74 2.69
306 307 0.756070 GGTTCCCCGTGGGTTTTGAA 60.756 55.000 3.83 0.00 44.74 2.69
307 308 1.112950 GTTCCCCGTGGGTTTTGAAA 58.887 50.000 3.83 0.00 44.74 2.69
308 309 1.481363 GTTCCCCGTGGGTTTTGAAAA 59.519 47.619 3.83 0.00 44.74 2.29
309 310 1.112950 TCCCCGTGGGTTTTGAAAAC 58.887 50.000 12.14 12.14 44.74 2.43
310 311 0.105224 CCCCGTGGGTTTTGAAAACC 59.895 55.000 27.29 27.29 46.16 3.27
311 312 1.116308 CCCGTGGGTTTTGAAAACCT 58.884 50.000 31.74 0.00 46.14 3.50
312 313 1.202475 CCCGTGGGTTTTGAAAACCTG 60.202 52.381 31.74 22.87 46.14 4.00
313 314 1.751924 CCGTGGGTTTTGAAAACCTGA 59.248 47.619 31.74 19.68 46.14 3.86
314 315 2.364002 CCGTGGGTTTTGAAAACCTGAT 59.636 45.455 31.74 0.00 46.14 2.90
315 316 3.380142 CGTGGGTTTTGAAAACCTGATG 58.620 45.455 31.74 21.82 46.14 3.07
316 317 3.727726 GTGGGTTTTGAAAACCTGATGG 58.272 45.455 31.74 0.00 46.14 3.51
317 318 2.703007 TGGGTTTTGAAAACCTGATGGG 59.297 45.455 31.74 0.00 46.14 4.00
329 330 3.498774 CCTGATGGGTTTAGGAGATGG 57.501 52.381 0.00 0.00 33.33 3.51
330 331 2.107204 CCTGATGGGTTTAGGAGATGGG 59.893 54.545 0.00 0.00 33.33 4.00
331 332 1.494721 TGATGGGTTTAGGAGATGGGC 59.505 52.381 0.00 0.00 0.00 5.36
332 333 1.494721 GATGGGTTTAGGAGATGGGCA 59.505 52.381 0.00 0.00 0.00 5.36
333 334 1.377690 TGGGTTTAGGAGATGGGCAA 58.622 50.000 0.00 0.00 0.00 4.52
334 335 1.713647 TGGGTTTAGGAGATGGGCAAA 59.286 47.619 0.00 0.00 0.00 3.68
335 336 2.110899 TGGGTTTAGGAGATGGGCAAAA 59.889 45.455 0.00 0.00 0.00 2.44
336 337 3.169908 GGGTTTAGGAGATGGGCAAAAA 58.830 45.455 0.00 0.00 0.00 1.94
337 338 3.774766 GGGTTTAGGAGATGGGCAAAAAT 59.225 43.478 0.00 0.00 0.00 1.82
338 339 4.225042 GGGTTTAGGAGATGGGCAAAAATT 59.775 41.667 0.00 0.00 0.00 1.82
339 340 5.280470 GGGTTTAGGAGATGGGCAAAAATTT 60.280 40.000 0.00 0.00 0.00 1.82
340 341 6.070481 GGGTTTAGGAGATGGGCAAAAATTTA 60.070 38.462 0.00 0.00 0.00 1.40
341 342 7.390823 GGTTTAGGAGATGGGCAAAAATTTAA 58.609 34.615 0.00 0.00 0.00 1.52
342 343 7.333423 GGTTTAGGAGATGGGCAAAAATTTAAC 59.667 37.037 0.00 0.00 0.00 2.01
343 344 5.420725 AGGAGATGGGCAAAAATTTAACC 57.579 39.130 0.00 0.00 0.00 2.85
344 345 4.225042 AGGAGATGGGCAAAAATTTAACCC 59.775 41.667 13.64 13.64 36.65 4.11
345 346 4.513442 GAGATGGGCAAAAATTTAACCCC 58.487 43.478 16.49 13.88 35.76 4.95
346 347 2.841442 TGGGCAAAAATTTAACCCCG 57.159 45.000 16.49 0.00 35.76 5.73
347 348 1.270893 TGGGCAAAAATTTAACCCCGC 60.271 47.619 16.49 3.69 35.76 6.13
348 349 1.270893 GGGCAAAAATTTAACCCCGCA 60.271 47.619 10.61 0.00 32.33 5.69
349 350 1.801771 GGCAAAAATTTAACCCCGCAC 59.198 47.619 0.00 0.00 0.00 5.34
350 351 2.484889 GCAAAAATTTAACCCCGCACA 58.515 42.857 0.00 0.00 0.00 4.57
351 352 2.222213 GCAAAAATTTAACCCCGCACAC 59.778 45.455 0.00 0.00 0.00 3.82
352 353 2.425578 AAAATTTAACCCCGCACACG 57.574 45.000 0.00 0.00 39.67 4.49
353 354 1.320507 AAATTTAACCCCGCACACGT 58.679 45.000 0.00 0.00 37.70 4.49
354 355 1.320507 AATTTAACCCCGCACACGTT 58.679 45.000 0.00 0.00 37.70 3.99
355 356 0.594110 ATTTAACCCCGCACACGTTG 59.406 50.000 0.00 0.00 37.70 4.10
356 357 0.463295 TTTAACCCCGCACACGTTGA 60.463 50.000 0.00 0.00 37.70 3.18
357 358 0.250381 TTAACCCCGCACACGTTGAT 60.250 50.000 0.00 0.00 37.70 2.57
358 359 0.951525 TAACCCCGCACACGTTGATG 60.952 55.000 0.00 0.00 37.70 3.07
359 360 3.430862 CCCCGCACACGTTGATGG 61.431 66.667 0.00 0.00 37.70 3.51
360 361 3.430862 CCCGCACACGTTGATGGG 61.431 66.667 11.25 11.25 36.42 4.00
361 362 3.430862 CCGCACACGTTGATGGGG 61.431 66.667 11.49 11.49 41.87 4.96
362 363 2.358125 CGCACACGTTGATGGGGA 60.358 61.111 0.00 0.00 33.53 4.81
363 364 2.677003 CGCACACGTTGATGGGGAC 61.677 63.158 0.00 0.00 33.53 4.46
374 375 2.203182 TGGGGACAGAGACGGGTT 59.797 61.111 0.00 0.00 35.01 4.11
375 376 1.460689 TGGGGACAGAGACGGGTTT 60.461 57.895 0.00 0.00 35.01 3.27
376 377 1.003718 GGGGACAGAGACGGGTTTG 60.004 63.158 0.00 0.00 0.00 2.93
377 378 1.752833 GGGACAGAGACGGGTTTGT 59.247 57.895 0.00 0.00 0.00 2.83
378 379 0.602905 GGGACAGAGACGGGTTTGTG 60.603 60.000 0.00 0.00 0.00 3.33
379 380 0.391597 GGACAGAGACGGGTTTGTGA 59.608 55.000 0.00 0.00 0.00 3.58
380 381 1.002087 GGACAGAGACGGGTTTGTGAT 59.998 52.381 0.00 0.00 0.00 3.06
381 382 2.550208 GGACAGAGACGGGTTTGTGATT 60.550 50.000 0.00 0.00 0.00 2.57
382 383 3.139077 GACAGAGACGGGTTTGTGATTT 58.861 45.455 0.00 0.00 0.00 2.17
383 384 3.551846 ACAGAGACGGGTTTGTGATTTT 58.448 40.909 0.00 0.00 0.00 1.82
384 385 3.564225 ACAGAGACGGGTTTGTGATTTTC 59.436 43.478 0.00 0.00 0.00 2.29
385 386 3.815401 CAGAGACGGGTTTGTGATTTTCT 59.185 43.478 0.00 0.00 0.00 2.52
386 387 4.065789 AGAGACGGGTTTGTGATTTTCTC 58.934 43.478 0.00 0.00 0.00 2.87
387 388 2.806244 AGACGGGTTTGTGATTTTCTCG 59.194 45.455 0.00 0.00 0.00 4.04
388 389 2.546789 GACGGGTTTGTGATTTTCTCGT 59.453 45.455 0.00 0.00 0.00 4.18
389 390 2.289547 ACGGGTTTGTGATTTTCTCGTG 59.710 45.455 0.00 0.00 0.00 4.35
390 391 2.350388 CGGGTTTGTGATTTTCTCGTGG 60.350 50.000 0.00 0.00 0.00 4.94
391 392 2.030274 GGGTTTGTGATTTTCTCGTGGG 60.030 50.000 0.00 0.00 0.00 4.61
392 393 2.030274 GGTTTGTGATTTTCTCGTGGGG 60.030 50.000 0.00 0.00 0.00 4.96
393 394 2.882137 GTTTGTGATTTTCTCGTGGGGA 59.118 45.455 0.00 0.00 0.00 4.81
394 395 3.433306 TTGTGATTTTCTCGTGGGGAT 57.567 42.857 0.00 0.00 0.00 3.85
395 396 2.710377 TGTGATTTTCTCGTGGGGATG 58.290 47.619 0.00 0.00 0.00 3.51
396 397 2.017049 GTGATTTTCTCGTGGGGATGG 58.983 52.381 0.00 0.00 0.00 3.51
397 398 1.064758 TGATTTTCTCGTGGGGATGGG 60.065 52.381 0.00 0.00 0.00 4.00
398 399 0.999712 ATTTTCTCGTGGGGATGGGT 59.000 50.000 0.00 0.00 0.00 4.51
399 400 0.774908 TTTTCTCGTGGGGATGGGTT 59.225 50.000 0.00 0.00 0.00 4.11
400 401 0.774908 TTTCTCGTGGGGATGGGTTT 59.225 50.000 0.00 0.00 0.00 3.27
401 402 0.037590 TTCTCGTGGGGATGGGTTTG 59.962 55.000 0.00 0.00 0.00 2.93
402 403 1.378514 CTCGTGGGGATGGGTTTGG 60.379 63.158 0.00 0.00 0.00 3.28
403 404 2.362375 CGTGGGGATGGGTTTGGG 60.362 66.667 0.00 0.00 0.00 4.12
404 405 2.683572 GTGGGGATGGGTTTGGGC 60.684 66.667 0.00 0.00 0.00 5.36
405 406 3.196385 TGGGGATGGGTTTGGGCA 61.196 61.111 0.00 0.00 0.00 5.36
406 407 2.121608 GGGGATGGGTTTGGGCAA 59.878 61.111 0.00 0.00 0.00 4.52
407 408 1.989508 GGGGATGGGTTTGGGCAAG 60.990 63.158 0.00 0.00 0.00 4.01
408 409 2.659063 GGGATGGGTTTGGGCAAGC 61.659 63.158 0.00 0.00 0.00 4.01
409 410 1.912763 GGATGGGTTTGGGCAAGCA 60.913 57.895 0.00 0.00 34.23 3.91
410 411 1.479368 GGATGGGTTTGGGCAAGCAA 61.479 55.000 0.00 0.00 34.23 3.91
411 412 0.396060 GATGGGTTTGGGCAAGCAAA 59.604 50.000 0.00 0.00 34.23 3.68
412 413 0.842635 ATGGGTTTGGGCAAGCAAAA 59.157 45.000 0.00 0.00 34.23 2.44
413 414 0.107459 TGGGTTTGGGCAAGCAAAAC 60.107 50.000 11.77 11.77 34.23 2.43
414 415 2.701587 GGTTTGGGCAAGCAAAACC 58.298 52.632 19.27 19.27 44.29 3.27
415 416 0.817634 GGTTTGGGCAAGCAAAACCC 60.818 55.000 21.60 10.49 44.63 4.11
418 419 3.230990 GGGCAAGCAAAACCCGGT 61.231 61.111 0.00 0.00 32.92 5.28
419 420 2.028925 GGCAAGCAAAACCCGGTG 59.971 61.111 0.00 0.00 0.00 4.94
420 421 2.028925 GCAAGCAAAACCCGGTGG 59.971 61.111 0.00 0.00 37.80 4.61
431 432 4.710167 CCGGTGGGTTTCGTCCCC 62.710 72.222 0.00 5.49 46.48 4.81
433 434 3.944945 GGTGGGTTTCGTCCCCGT 61.945 66.667 9.69 0.00 45.86 5.28
434 435 2.111669 GTGGGTTTCGTCCCCGTT 59.888 61.111 9.69 0.00 45.86 4.44
435 436 2.111460 TGGGTTTCGTCCCCGTTG 59.889 61.111 9.69 0.00 45.86 4.10
436 437 3.359523 GGGTTTCGTCCCCGTTGC 61.360 66.667 2.57 0.00 41.54 4.17
437 438 3.359523 GGTTTCGTCCCCGTTGCC 61.360 66.667 0.00 0.00 35.01 4.52
438 439 2.592287 GTTTCGTCCCCGTTGCCA 60.592 61.111 0.00 0.00 35.01 4.92
439 440 1.969589 GTTTCGTCCCCGTTGCCAT 60.970 57.895 0.00 0.00 35.01 4.40
440 441 1.673009 TTTCGTCCCCGTTGCCATC 60.673 57.895 0.00 0.00 35.01 3.51
441 442 2.119484 TTTCGTCCCCGTTGCCATCT 62.119 55.000 0.00 0.00 35.01 2.90
442 443 2.046314 CGTCCCCGTTGCCATCTT 60.046 61.111 0.00 0.00 0.00 2.40
443 444 2.398554 CGTCCCCGTTGCCATCTTG 61.399 63.158 0.00 0.00 0.00 3.02
444 445 1.002624 GTCCCCGTTGCCATCTTGA 60.003 57.895 0.00 0.00 0.00 3.02
445 446 1.002624 TCCCCGTTGCCATCTTGAC 60.003 57.895 0.00 0.00 0.00 3.18
446 447 2.046285 CCCCGTTGCCATCTTGACC 61.046 63.158 0.00 0.00 0.00 4.02
447 448 2.046285 CCCGTTGCCATCTTGACCC 61.046 63.158 0.00 0.00 0.00 4.46
448 449 1.303236 CCGTTGCCATCTTGACCCA 60.303 57.895 0.00 0.00 0.00 4.51
449 450 0.680921 CCGTTGCCATCTTGACCCAT 60.681 55.000 0.00 0.00 0.00 4.00
450 451 0.452987 CGTTGCCATCTTGACCCATG 59.547 55.000 0.00 0.00 0.00 3.66
451 452 1.838112 GTTGCCATCTTGACCCATGA 58.162 50.000 0.00 0.00 0.00 3.07
452 453 1.747355 GTTGCCATCTTGACCCATGAG 59.253 52.381 0.00 0.00 0.00 2.90
453 454 0.394762 TGCCATCTTGACCCATGAGC 60.395 55.000 0.00 0.00 0.00 4.26
454 455 1.442526 GCCATCTTGACCCATGAGCG 61.443 60.000 0.00 0.00 0.00 5.03
463 464 0.108585 ACCCATGAGCGTTTGAGTGT 59.891 50.000 0.00 0.00 0.00 3.55
467 468 2.407090 CATGAGCGTTTGAGTGTCTGA 58.593 47.619 0.00 0.00 0.00 3.27
480 481 8.587950 GTTTGAGTGTCTGAATTTATCTAGTCG 58.412 37.037 0.00 0.00 0.00 4.18
482 483 6.602009 TGAGTGTCTGAATTTATCTAGTCGGA 59.398 38.462 0.00 0.00 0.00 4.55
563 576 2.159490 CGGTTTCGGTTCTCTCTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
564 577 3.086282 GGTTTCGGTTCTCTCTCTCTCT 58.914 50.000 0.00 0.00 0.00 3.10
567 580 3.260475 TCGGTTCTCTCTCTCTCTCAG 57.740 52.381 0.00 0.00 0.00 3.35
587 600 5.541845 TCAGCGGAATCTATAATCCAACTG 58.458 41.667 0.00 0.00 39.31 3.16
616 632 5.005740 TGGGATCTGAAATTCTGAACACAG 58.994 41.667 10.16 11.45 28.60 3.66
628 644 6.940831 TTCTGAACACAGAAATGTCATGAA 57.059 33.333 9.71 0.00 44.34 2.57
629 645 6.549912 TCTGAACACAGAAATGTCATGAAG 57.450 37.500 0.00 0.00 37.66 3.02
630 646 6.290605 TCTGAACACAGAAATGTCATGAAGA 58.709 36.000 0.00 0.00 37.66 2.87
631 647 6.203530 TCTGAACACAGAAATGTCATGAAGAC 59.796 38.462 0.00 0.00 41.07 3.01
632 648 6.017687 CTGAACACAGAAATGTCATGAAGACA 60.018 38.462 0.00 0.00 45.73 3.41
633 649 7.467675 CTGAACACAGAAATGTCATGAAGACAA 60.468 37.037 0.00 0.00 45.29 3.18
642 658 4.147219 GTCATGAAGACAACTTTTCCCG 57.853 45.455 0.00 0.00 46.77 5.14
643 659 3.058224 GTCATGAAGACAACTTTTCCCGG 60.058 47.826 0.00 0.00 46.77 5.73
644 660 3.146066 CATGAAGACAACTTTTCCCGGA 58.854 45.455 0.73 0.00 36.39 5.14
645 661 2.567985 TGAAGACAACTTTTCCCGGAC 58.432 47.619 0.73 0.00 36.39 4.79
646 662 1.529865 GAAGACAACTTTTCCCGGACG 59.470 52.381 0.73 0.00 36.39 4.79
647 663 0.250166 AGACAACTTTTCCCGGACGG 60.250 55.000 0.73 3.25 0.00 4.79
648 664 0.249996 GACAACTTTTCCCGGACGGA 60.250 55.000 13.13 0.00 39.68 4.69
649 665 0.250166 ACAACTTTTCCCGGACGGAG 60.250 55.000 13.13 3.95 43.39 4.63
650 666 0.953960 CAACTTTTCCCGGACGGAGG 60.954 60.000 13.13 0.00 43.39 4.30
683 700 7.450074 ACGTAAAGAATATAATGATCCAGCCA 58.550 34.615 0.00 0.00 0.00 4.75
910 2441 1.285641 CCCGGCAAACACACACATC 59.714 57.895 0.00 0.00 0.00 3.06
947 2488 1.135960 AGATTAGCAGGGGAGCTTCC 58.864 55.000 0.70 0.70 43.70 3.46
966 2516 6.069963 AGCTTCCACTAATCACTTCCACTAAT 60.070 38.462 0.00 0.00 0.00 1.73
968 2518 7.496346 TTCCACTAATCACTTCCACTAATCT 57.504 36.000 0.00 0.00 0.00 2.40
1459 3048 2.679336 GGTACGTAACATTTCCGCCATT 59.321 45.455 5.55 0.00 0.00 3.16
1462 3051 2.554893 ACGTAACATTTCCGCCATTGTT 59.445 40.909 0.00 0.00 36.37 2.83
1463 3052 3.752222 ACGTAACATTTCCGCCATTGTTA 59.248 39.130 0.00 0.00 34.39 2.41
1464 3053 4.142773 ACGTAACATTTCCGCCATTGTTAG 60.143 41.667 0.00 0.00 35.78 2.34
1579 3249 1.714541 TTACCAGTACAACCCGGACA 58.285 50.000 0.73 0.00 0.00 4.02
1783 3453 1.274703 ATCGGTCCAGGTCCAATGCT 61.275 55.000 3.39 0.00 0.00 3.79
1803 3473 3.647771 GCTTTCCCCACCGACCCT 61.648 66.667 0.00 0.00 0.00 4.34
1920 3590 0.950836 CTGCGTGGTTTGATGGTTCA 59.049 50.000 0.00 0.00 0.00 3.18
2114 3784 1.340405 GGGCATTGACATGACAGAGGT 60.340 52.381 0.00 0.00 40.81 3.85
2475 4335 7.605449 ACACCTCCATTAATTGATTCTTTGTG 58.395 34.615 0.00 0.00 0.00 3.33
2545 4407 3.938334 GCACTTTTTGTTGGGTTTCACAT 59.062 39.130 0.00 0.00 0.00 3.21
2557 4829 2.997986 GGTTTCACATACACGTCGGAAT 59.002 45.455 0.00 0.00 0.00 3.01
2558 4830 3.181524 GGTTTCACATACACGTCGGAATG 60.182 47.826 0.00 0.00 0.00 2.67
2560 4832 3.793797 TCACATACACGTCGGAATGAT 57.206 42.857 9.74 0.00 0.00 2.45
2561 4833 4.118093 TCACATACACGTCGGAATGATT 57.882 40.909 9.74 0.00 0.00 2.57
2562 4834 3.862845 TCACATACACGTCGGAATGATTG 59.137 43.478 9.74 1.37 0.00 2.67
2563 4835 3.862845 CACATACACGTCGGAATGATTGA 59.137 43.478 9.74 0.00 0.00 2.57
2564 4836 4.328712 CACATACACGTCGGAATGATTGAA 59.671 41.667 9.74 0.00 0.00 2.69
2565 4837 4.566759 ACATACACGTCGGAATGATTGAAG 59.433 41.667 9.74 0.00 0.00 3.02
2567 4839 1.665679 CACGTCGGAATGATTGAAGGG 59.334 52.381 0.00 0.00 0.00 3.95
2568 4840 0.657840 CGTCGGAATGATTGAAGGGC 59.342 55.000 0.00 0.00 0.00 5.19
2569 4841 1.743772 CGTCGGAATGATTGAAGGGCT 60.744 52.381 0.00 0.00 0.00 5.19
2570 4842 1.672881 GTCGGAATGATTGAAGGGCTG 59.327 52.381 0.00 0.00 0.00 4.85
2571 4843 1.281867 TCGGAATGATTGAAGGGCTGT 59.718 47.619 0.00 0.00 0.00 4.40
2573 4845 2.450476 GGAATGATTGAAGGGCTGTGT 58.550 47.619 0.00 0.00 0.00 3.72
2574 4846 2.165030 GGAATGATTGAAGGGCTGTGTG 59.835 50.000 0.00 0.00 0.00 3.82
2575 4847 1.180029 ATGATTGAAGGGCTGTGTGC 58.820 50.000 0.00 0.00 41.94 4.57
2608 4880 4.217510 TGGGCTTGCAAATGATAATAGCT 58.782 39.130 0.00 0.00 0.00 3.32
2614 4886 4.935702 TGCAAATGATAATAGCTGCAACC 58.064 39.130 1.02 0.00 36.89 3.77
2620 4892 1.750193 TAATAGCTGCAACCTGGCAC 58.250 50.000 1.02 0.00 39.25 5.01
2637 4921 8.540507 ACCTGGCACGAATTATAGATAGATAT 57.459 34.615 0.00 0.00 0.00 1.63
2735 6412 5.536554 ACTGTTGAGATACTTTGAATGCG 57.463 39.130 0.00 0.00 0.00 4.73
2812 6632 1.598701 GGCATGCCAAGAACCACCTC 61.599 60.000 32.08 0.00 35.81 3.85
2830 6665 6.101150 ACCACCTCACTGGATATAATAAGCAA 59.899 38.462 0.00 0.00 39.71 3.91
2878 6957 5.428184 AACTGGGATTAGACAAGAAGAGG 57.572 43.478 0.00 0.00 0.00 3.69
2900 6979 5.071788 AGGGATGTCTTTGTCTTGAGTTACA 59.928 40.000 0.00 0.00 0.00 2.41
2901 6980 5.409826 GGGATGTCTTTGTCTTGAGTTACAG 59.590 44.000 0.00 0.00 0.00 2.74
2902 6981 5.992217 GGATGTCTTTGTCTTGAGTTACAGT 59.008 40.000 0.00 0.00 0.00 3.55
2904 6983 5.972935 TGTCTTTGTCTTGAGTTACAGTGA 58.027 37.500 0.00 0.00 0.00 3.41
2907 7021 5.362717 TCTTTGTCTTGAGTTACAGTGAGGA 59.637 40.000 0.00 0.00 0.00 3.71
2909 7023 6.911250 TTGTCTTGAGTTACAGTGAGGATA 57.089 37.500 0.00 0.00 0.00 2.59
2942 7056 8.966868 GGAAAAGGAAACAATGATAGAATGGTA 58.033 33.333 0.00 0.00 0.00 3.25
2974 7088 9.537192 TGCTAAAATGAATTGAAATGGATGATC 57.463 29.630 0.00 0.00 0.00 2.92
2975 7089 8.697067 GCTAAAATGAATTGAAATGGATGATCG 58.303 33.333 0.00 0.00 0.00 3.69
2978 7092 7.578310 AATGAATTGAAATGGATGATCGAGT 57.422 32.000 0.00 0.00 0.00 4.18
2998 7112 5.333339 CGAGTAGTTCAATTGTGACAGTTGG 60.333 44.000 18.68 3.14 33.02 3.77
3006 7120 1.904287 TGTGACAGTTGGTAATGCCC 58.096 50.000 0.00 0.00 36.04 5.36
3070 7185 2.299297 ACTAGCTAGTTGTGTGTGTCCC 59.701 50.000 20.95 0.00 31.13 4.46
3072 7187 1.488812 AGCTAGTTGTGTGTGTCCCAA 59.511 47.619 0.00 0.00 0.00 4.12
3087 7202 4.982295 GTGTCCCAAAAGCAAAACTCATAC 59.018 41.667 0.00 0.00 0.00 2.39
3129 7244 1.151221 ATGTGGCCTTGTCTGCACA 59.849 52.632 3.32 0.00 0.00 4.57
3148 7263 6.530120 TGCACAAAACTAGGATTAGACAAGA 58.470 36.000 0.00 0.00 0.00 3.02
3157 7272 7.985589 ACTAGGATTAGACAAGAAAAAGGGAA 58.014 34.615 0.00 0.00 0.00 3.97
3286 7488 3.069980 GCAGTCGATCCCTCGCACT 62.070 63.158 0.00 0.00 44.65 4.40
3331 7533 3.971702 AACCTCCTGCAGTGGCCC 61.972 66.667 19.19 0.00 40.13 5.80
3465 7667 1.610624 GGCCTCATTTCGTCTTGACCA 60.611 52.381 0.00 0.00 0.00 4.02
3482 7684 4.664677 AGCTTGACGTCGCCGCTT 62.665 61.111 17.00 5.40 37.70 4.68
3635 7837 2.490903 GTCTACTTCTACGTGGCCAGAA 59.509 50.000 5.11 5.14 0.00 3.02
3755 7957 1.277842 TGCTCAATGGCGAGGAGTTTA 59.722 47.619 0.00 0.00 33.36 2.01
3758 7960 1.546923 TCAATGGCGAGGAGTTTACGA 59.453 47.619 0.00 0.00 0.00 3.43
3978 8180 5.010012 ACATGGCCTCACTGTAAAAAGAAAG 59.990 40.000 3.32 0.00 0.00 2.62
4097 8301 2.808543 ACTTTTCTGCGTTGTCTGATCC 59.191 45.455 0.00 0.00 0.00 3.36
4103 8307 1.827344 TGCGTTGTCTGATCCATCTCT 59.173 47.619 0.00 0.00 0.00 3.10
4230 8438 3.450457 TGCCCGATAAATGCAGGAAAAAT 59.550 39.130 0.00 0.00 0.00 1.82
4259 8467 1.531149 CACGGTGTTACAGCAAGGAAG 59.469 52.381 14.97 0.00 0.00 3.46
4270 8478 1.707427 AGCAAGGAAGAACCACATCCT 59.293 47.619 0.00 0.00 46.94 3.24
4323 8531 3.576550 TGACACCTACACTGCTGATTACA 59.423 43.478 0.00 0.00 0.00 2.41
4326 8534 4.040461 ACACCTACACTGCTGATTACAACT 59.960 41.667 0.00 0.00 0.00 3.16
4377 8585 2.095372 CCGTCCTCGCTTTATTTGTTCC 59.905 50.000 0.00 0.00 35.54 3.62
4405 8613 7.304566 GGTTTTGCGTTCAAATTCAAATTTTCG 60.305 33.333 0.00 5.72 41.37 3.46
4450 8658 3.253838 TTCTTGGGGTGGACCGGG 61.254 66.667 6.32 0.00 41.60 5.73
4485 8693 5.940595 CCGGTTTGGTTAACGAAATTATCA 58.059 37.500 17.22 0.00 37.64 2.15
4486 8694 6.380190 CCGGTTTGGTTAACGAAATTATCAA 58.620 36.000 17.22 2.84 37.64 2.57
4487 8695 6.306117 CCGGTTTGGTTAACGAAATTATCAAC 59.694 38.462 17.22 5.11 37.64 3.18
4488 8696 6.306117 CGGTTTGGTTAACGAAATTATCAACC 59.694 38.462 17.22 11.97 37.64 3.77
4489 8697 7.146648 GGTTTGGTTAACGAAATTATCAACCA 58.853 34.615 17.22 0.01 37.64 3.67
4509 8717 6.139679 ACCAAGAGTAAAATCCTTGATCCA 57.860 37.500 0.00 0.00 39.55 3.41
4514 8722 6.648192 AGAGTAAAATCCTTGATCCAGACTG 58.352 40.000 0.00 0.00 0.00 3.51
4550 8760 5.411361 TCACATGGTATGCGCTTATATTTCC 59.589 40.000 9.73 4.46 0.00 3.13
4679 8891 2.440627 TGCATCGGAGGGAGTAGTACTA 59.559 50.000 1.88 0.00 0.00 1.82
4683 8895 5.314529 CATCGGAGGGAGTAGTACTAATGA 58.685 45.833 7.74 0.00 0.00 2.57
4778 8990 2.971607 CAAAAGGTTTTGCGTGCATTG 58.028 42.857 2.37 0.00 40.76 2.82
4780 8992 0.463620 AAGGTTTTGCGTGCATTGGT 59.536 45.000 0.00 0.00 0.00 3.67
4781 8993 0.031994 AGGTTTTGCGTGCATTGGTC 59.968 50.000 0.00 0.00 0.00 4.02
4793 9009 2.364647 TGCATTGGTCTTGTTTCATGCA 59.635 40.909 0.55 0.55 40.84 3.96
4803 9019 2.139118 TGTTTCATGCAACGATCGACA 58.861 42.857 24.34 16.67 0.00 4.35
4814 9030 4.571889 CAACGATCGACAATCAATCTGTG 58.428 43.478 24.34 0.00 33.65 3.66
4852 9068 1.153549 GAGGCTAGGCACAAGGTCG 60.154 63.158 19.70 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.212213 TGTATTTTGACGGGTTTTGTCG 57.788 40.909 0.00 0.00 39.22 4.35
1 2 8.751302 AATAATGTATTTTGACGGGTTTTGTC 57.249 30.769 0.00 0.00 36.88 3.18
4 5 9.361315 GCTAAATAATGTATTTTGACGGGTTTT 57.639 29.630 6.42 0.00 39.06 2.43
5 6 8.524487 TGCTAAATAATGTATTTTGACGGGTTT 58.476 29.630 6.42 0.00 39.06 3.27
6 7 8.057536 TGCTAAATAATGTATTTTGACGGGTT 57.942 30.769 6.42 0.00 39.06 4.11
7 8 7.633193 TGCTAAATAATGTATTTTGACGGGT 57.367 32.000 6.42 0.00 39.06 5.28
8 9 7.114811 GCATGCTAAATAATGTATTTTGACGGG 59.885 37.037 11.37 0.00 39.06 5.28
9 10 7.647318 TGCATGCTAAATAATGTATTTTGACGG 59.353 33.333 20.33 0.00 39.06 4.79
10 11 8.471457 GTGCATGCTAAATAATGTATTTTGACG 58.529 33.333 20.33 0.00 39.06 4.35
11 12 8.755018 GGTGCATGCTAAATAATGTATTTTGAC 58.245 33.333 20.33 1.33 39.06 3.18
12 13 7.647318 CGGTGCATGCTAAATAATGTATTTTGA 59.353 33.333 20.33 0.00 39.06 2.69
13 14 7.647318 TCGGTGCATGCTAAATAATGTATTTTG 59.353 33.333 20.33 0.00 39.06 2.44
14 15 7.711846 TCGGTGCATGCTAAATAATGTATTTT 58.288 30.769 20.33 0.00 39.06 1.82
15 16 7.270757 TCGGTGCATGCTAAATAATGTATTT 57.729 32.000 20.33 0.00 41.06 1.40
16 17 6.875948 TCGGTGCATGCTAAATAATGTATT 57.124 33.333 20.33 0.00 0.00 1.89
17 18 6.094048 GGATCGGTGCATGCTAAATAATGTAT 59.906 38.462 20.33 0.00 0.00 2.29
18 19 5.411361 GGATCGGTGCATGCTAAATAATGTA 59.589 40.000 20.33 0.00 0.00 2.29
19 20 4.216257 GGATCGGTGCATGCTAAATAATGT 59.784 41.667 20.33 0.00 0.00 2.71
20 21 4.216042 TGGATCGGTGCATGCTAAATAATG 59.784 41.667 20.33 0.37 0.00 1.90
21 22 4.397420 TGGATCGGTGCATGCTAAATAAT 58.603 39.130 20.33 4.98 0.00 1.28
22 23 3.814625 TGGATCGGTGCATGCTAAATAA 58.185 40.909 20.33 0.00 0.00 1.40
23 24 3.483808 TGGATCGGTGCATGCTAAATA 57.516 42.857 20.33 0.87 0.00 1.40
24 25 2.346766 TGGATCGGTGCATGCTAAAT 57.653 45.000 20.33 7.17 0.00 1.40
25 26 2.158769 AGATGGATCGGTGCATGCTAAA 60.159 45.455 20.33 2.05 36.44 1.85
26 27 1.417517 AGATGGATCGGTGCATGCTAA 59.582 47.619 20.33 0.00 36.44 3.09
27 28 1.051008 AGATGGATCGGTGCATGCTA 58.949 50.000 20.33 2.15 36.44 3.49
28 29 0.182061 AAGATGGATCGGTGCATGCT 59.818 50.000 20.33 1.74 36.44 3.79
29 30 0.309922 CAAGATGGATCGGTGCATGC 59.690 55.000 7.67 11.82 36.44 4.06
30 31 1.600957 GTCAAGATGGATCGGTGCATG 59.399 52.381 7.67 0.00 36.44 4.06
31 32 1.487976 AGTCAAGATGGATCGGTGCAT 59.512 47.619 0.77 0.77 39.30 3.96
32 33 0.904649 AGTCAAGATGGATCGGTGCA 59.095 50.000 0.00 0.00 0.00 4.57
33 34 1.134699 TGAGTCAAGATGGATCGGTGC 60.135 52.381 0.00 0.00 0.00 5.01
34 35 2.967599 TGAGTCAAGATGGATCGGTG 57.032 50.000 0.00 0.00 0.00 4.94
35 36 2.834549 ACTTGAGTCAAGATGGATCGGT 59.165 45.455 34.16 10.81 43.42 4.69
36 37 3.193263 CACTTGAGTCAAGATGGATCGG 58.807 50.000 34.16 10.19 43.42 4.18
37 38 3.193263 CCACTTGAGTCAAGATGGATCG 58.807 50.000 34.16 10.87 43.42 3.69
38 39 2.941720 GCCACTTGAGTCAAGATGGATC 59.058 50.000 34.63 23.55 43.42 3.36
39 40 2.356535 GGCCACTTGAGTCAAGATGGAT 60.357 50.000 34.63 17.97 43.42 3.41
40 41 1.003580 GGCCACTTGAGTCAAGATGGA 59.996 52.381 34.63 8.66 43.42 3.41
41 42 1.457346 GGCCACTTGAGTCAAGATGG 58.543 55.000 34.16 31.93 43.42 3.51
42 43 1.271543 TGGGCCACTTGAGTCAAGATG 60.272 52.381 34.16 25.98 43.42 2.90
43 44 1.067295 TGGGCCACTTGAGTCAAGAT 58.933 50.000 34.16 18.21 43.42 2.40
44 45 0.843309 TTGGGCCACTTGAGTCAAGA 59.157 50.000 34.16 12.13 43.42 3.02
45 46 1.610522 CTTTGGGCCACTTGAGTCAAG 59.389 52.381 27.66 27.66 45.85 3.02
46 47 1.691196 CTTTGGGCCACTTGAGTCAA 58.309 50.000 5.23 5.25 0.00 3.18
47 48 0.823356 GCTTTGGGCCACTTGAGTCA 60.823 55.000 5.23 0.00 34.27 3.41
48 49 1.959848 GCTTTGGGCCACTTGAGTC 59.040 57.895 5.23 0.00 34.27 3.36
49 50 4.181051 GCTTTGGGCCACTTGAGT 57.819 55.556 5.23 0.00 34.27 3.41
58 59 3.994853 GGCAGTGTGGCTTTGGGC 61.995 66.667 0.00 0.00 40.14 5.36
59 60 3.305516 GGGCAGTGTGGCTTTGGG 61.306 66.667 0.10 0.00 43.20 4.12
60 61 3.673484 CGGGCAGTGTGGCTTTGG 61.673 66.667 0.10 0.00 43.20 3.28
61 62 2.594303 TCGGGCAGTGTGGCTTTG 60.594 61.111 0.10 0.00 43.20 2.77
62 63 2.281761 CTCGGGCAGTGTGGCTTT 60.282 61.111 0.10 0.00 43.20 3.51
85 86 4.803426 CTCGACGCTGTGGGGCTC 62.803 72.222 0.00 0.00 0.00 4.70
91 92 3.417275 CTAGGGCCTCGACGCTGTG 62.417 68.421 10.74 0.00 34.29 3.66
92 93 3.141488 CTAGGGCCTCGACGCTGT 61.141 66.667 10.74 0.00 34.29 4.40
93 94 2.829003 TCTAGGGCCTCGACGCTG 60.829 66.667 10.74 0.00 34.29 5.18
94 95 1.980784 TACTCTAGGGCCTCGACGCT 61.981 60.000 10.74 2.32 36.67 5.07
95 96 1.525535 TACTCTAGGGCCTCGACGC 60.526 63.158 10.74 0.00 0.00 5.19
96 97 0.463295 TGTACTCTAGGGCCTCGACG 60.463 60.000 10.74 6.15 0.00 5.12
97 98 1.760192 TTGTACTCTAGGGCCTCGAC 58.240 55.000 10.74 2.57 0.00 4.20
98 99 2.097825 GTTTGTACTCTAGGGCCTCGA 58.902 52.381 10.74 8.88 0.00 4.04
99 100 1.822990 TGTTTGTACTCTAGGGCCTCG 59.177 52.381 10.74 3.10 0.00 4.63
100 101 3.975168 TTGTTTGTACTCTAGGGCCTC 57.025 47.619 10.74 0.00 0.00 4.70
101 102 3.244805 GGTTTGTTTGTACTCTAGGGCCT 60.245 47.826 12.58 12.58 0.00 5.19
102 103 3.079578 GGTTTGTTTGTACTCTAGGGCC 58.920 50.000 0.00 0.00 0.00 5.80
103 104 3.079578 GGGTTTGTTTGTACTCTAGGGC 58.920 50.000 0.00 0.00 0.00 5.19
104 105 3.329814 AGGGGTTTGTTTGTACTCTAGGG 59.670 47.826 0.00 0.00 0.00 3.53
105 106 4.576879 GAGGGGTTTGTTTGTACTCTAGG 58.423 47.826 0.00 0.00 0.00 3.02
106 107 4.243270 CGAGGGGTTTGTTTGTACTCTAG 58.757 47.826 0.00 0.00 0.00 2.43
107 108 3.555586 GCGAGGGGTTTGTTTGTACTCTA 60.556 47.826 0.00 0.00 0.00 2.43
108 109 2.809299 GCGAGGGGTTTGTTTGTACTCT 60.809 50.000 0.00 0.00 0.00 3.24
109 110 1.534163 GCGAGGGGTTTGTTTGTACTC 59.466 52.381 0.00 0.00 0.00 2.59
110 111 1.142262 AGCGAGGGGTTTGTTTGTACT 59.858 47.619 0.00 0.00 0.00 2.73
111 112 1.534163 GAGCGAGGGGTTTGTTTGTAC 59.466 52.381 0.00 0.00 0.00 2.90
112 113 1.874739 CGAGCGAGGGGTTTGTTTGTA 60.875 52.381 0.00 0.00 0.00 2.41
113 114 1.164041 CGAGCGAGGGGTTTGTTTGT 61.164 55.000 0.00 0.00 0.00 2.83
114 115 1.574428 CGAGCGAGGGGTTTGTTTG 59.426 57.895 0.00 0.00 0.00 2.93
115 116 1.599797 CCGAGCGAGGGGTTTGTTT 60.600 57.895 0.00 0.00 0.00 2.83
116 117 2.032071 CCGAGCGAGGGGTTTGTT 59.968 61.111 0.00 0.00 0.00 2.83
117 118 3.236003 GACCGAGCGAGGGGTTTGT 62.236 63.158 5.52 0.00 36.46 2.83
118 119 2.434359 GACCGAGCGAGGGGTTTG 60.434 66.667 5.52 0.00 36.46 2.93
119 120 4.065281 CGACCGAGCGAGGGGTTT 62.065 66.667 5.52 0.00 36.46 3.27
129 130 2.356313 AACACTGCAGCGACCGAG 60.356 61.111 15.27 0.00 0.00 4.63
130 131 2.661537 CAACACTGCAGCGACCGA 60.662 61.111 15.27 0.00 0.00 4.69
140 141 1.728971 CCTAAAGAGCGAGCAACACTG 59.271 52.381 0.00 0.00 0.00 3.66
141 142 1.618837 TCCTAAAGAGCGAGCAACACT 59.381 47.619 0.00 0.00 0.00 3.55
142 143 1.727335 GTCCTAAAGAGCGAGCAACAC 59.273 52.381 0.00 0.00 0.00 3.32
143 144 1.618837 AGTCCTAAAGAGCGAGCAACA 59.381 47.619 0.00 0.00 0.00 3.33
144 145 2.094442 AGAGTCCTAAAGAGCGAGCAAC 60.094 50.000 0.00 0.00 0.00 4.17
145 146 2.164624 GAGAGTCCTAAAGAGCGAGCAA 59.835 50.000 0.00 0.00 0.00 3.91
146 147 1.746220 GAGAGTCCTAAAGAGCGAGCA 59.254 52.381 0.00 0.00 0.00 4.26
147 148 2.021457 AGAGAGTCCTAAAGAGCGAGC 58.979 52.381 0.00 0.00 0.00 5.03
148 149 3.541632 AGAGAGAGTCCTAAAGAGCGAG 58.458 50.000 0.00 0.00 0.00 5.03
149 150 3.537580 GAGAGAGAGTCCTAAAGAGCGA 58.462 50.000 0.00 0.00 0.00 4.93
150 151 2.616842 GGAGAGAGAGTCCTAAAGAGCG 59.383 54.545 0.00 0.00 0.00 5.03
151 152 2.956333 GGGAGAGAGAGTCCTAAAGAGC 59.044 54.545 0.00 0.00 34.16 4.09
152 153 3.211045 CGGGAGAGAGAGTCCTAAAGAG 58.789 54.545 0.00 0.00 34.16 2.85
153 154 2.684334 GCGGGAGAGAGAGTCCTAAAGA 60.684 54.545 0.00 0.00 34.16 2.52
154 155 1.679153 GCGGGAGAGAGAGTCCTAAAG 59.321 57.143 0.00 0.00 34.16 1.85
155 156 1.005569 TGCGGGAGAGAGAGTCCTAAA 59.994 52.381 0.00 0.00 34.16 1.85
156 157 0.624254 TGCGGGAGAGAGAGTCCTAA 59.376 55.000 0.00 0.00 34.16 2.69
157 158 0.107116 GTGCGGGAGAGAGAGTCCTA 60.107 60.000 0.00 0.00 34.16 2.94
158 159 1.379309 GTGCGGGAGAGAGAGTCCT 60.379 63.158 0.00 0.00 34.16 3.85
159 160 1.251527 TTGTGCGGGAGAGAGAGTCC 61.252 60.000 0.00 0.00 0.00 3.85
160 161 0.109039 GTTGTGCGGGAGAGAGAGTC 60.109 60.000 0.00 0.00 0.00 3.36
161 162 0.827925 TGTTGTGCGGGAGAGAGAGT 60.828 55.000 0.00 0.00 0.00 3.24
162 163 0.389166 GTGTTGTGCGGGAGAGAGAG 60.389 60.000 0.00 0.00 0.00 3.20
163 164 1.666011 GTGTTGTGCGGGAGAGAGA 59.334 57.895 0.00 0.00 0.00 3.10
164 165 1.734477 CGTGTTGTGCGGGAGAGAG 60.734 63.158 0.00 0.00 0.00 3.20
165 166 2.197605 TCGTGTTGTGCGGGAGAGA 61.198 57.895 0.00 0.00 0.00 3.10
166 167 2.022129 GTCGTGTTGTGCGGGAGAG 61.022 63.158 0.00 0.00 0.00 3.20
167 168 2.028484 GTCGTGTTGTGCGGGAGA 59.972 61.111 0.00 0.00 0.00 3.71
168 169 2.279851 TGTCGTGTTGTGCGGGAG 60.280 61.111 0.00 0.00 0.00 4.30
169 170 2.586635 GTGTCGTGTTGTGCGGGA 60.587 61.111 0.00 0.00 0.00 5.14
170 171 2.702751 TAGGTGTCGTGTTGTGCGGG 62.703 60.000 0.00 0.00 0.00 6.13
171 172 0.876777 TTAGGTGTCGTGTTGTGCGG 60.877 55.000 0.00 0.00 0.00 5.69
172 173 0.931702 TTTAGGTGTCGTGTTGTGCG 59.068 50.000 0.00 0.00 0.00 5.34
173 174 1.003223 GGTTTAGGTGTCGTGTTGTGC 60.003 52.381 0.00 0.00 0.00 4.57
174 175 2.557317 AGGTTTAGGTGTCGTGTTGTG 58.443 47.619 0.00 0.00 0.00 3.33
175 176 2.994186 AGGTTTAGGTGTCGTGTTGT 57.006 45.000 0.00 0.00 0.00 3.32
176 177 4.024641 GGTTTAGGTTTAGGTGTCGTGTTG 60.025 45.833 0.00 0.00 0.00 3.33
177 178 4.129380 GGTTTAGGTTTAGGTGTCGTGTT 58.871 43.478 0.00 0.00 0.00 3.32
178 179 3.389002 AGGTTTAGGTTTAGGTGTCGTGT 59.611 43.478 0.00 0.00 0.00 4.49
179 180 3.999046 AGGTTTAGGTTTAGGTGTCGTG 58.001 45.455 0.00 0.00 0.00 4.35
180 181 5.806654 TTAGGTTTAGGTTTAGGTGTCGT 57.193 39.130 0.00 0.00 0.00 4.34
181 182 6.314648 GGATTTAGGTTTAGGTTTAGGTGTCG 59.685 42.308 0.00 0.00 0.00 4.35
182 183 6.600822 GGGATTTAGGTTTAGGTTTAGGTGTC 59.399 42.308 0.00 0.00 0.00 3.67
183 184 6.487828 GGGATTTAGGTTTAGGTTTAGGTGT 58.512 40.000 0.00 0.00 0.00 4.16
184 185 5.889853 GGGGATTTAGGTTTAGGTTTAGGTG 59.110 44.000 0.00 0.00 0.00 4.00
185 186 5.043881 GGGGGATTTAGGTTTAGGTTTAGGT 60.044 44.000 0.00 0.00 0.00 3.08
186 187 5.043956 TGGGGGATTTAGGTTTAGGTTTAGG 60.044 44.000 0.00 0.00 0.00 2.69
187 188 6.082228 TGGGGGATTTAGGTTTAGGTTTAG 57.918 41.667 0.00 0.00 0.00 1.85
188 189 5.576195 GCTGGGGGATTTAGGTTTAGGTTTA 60.576 44.000 0.00 0.00 0.00 2.01
189 190 4.816614 GCTGGGGGATTTAGGTTTAGGTTT 60.817 45.833 0.00 0.00 0.00 3.27
190 191 3.309629 GCTGGGGGATTTAGGTTTAGGTT 60.310 47.826 0.00 0.00 0.00 3.50
191 192 2.243994 GCTGGGGGATTTAGGTTTAGGT 59.756 50.000 0.00 0.00 0.00 3.08
192 193 2.424379 GGCTGGGGGATTTAGGTTTAGG 60.424 54.545 0.00 0.00 0.00 2.69
193 194 2.748465 CGGCTGGGGGATTTAGGTTTAG 60.748 54.545 0.00 0.00 0.00 1.85
194 195 1.213430 CGGCTGGGGGATTTAGGTTTA 59.787 52.381 0.00 0.00 0.00 2.01
195 196 0.033503 CGGCTGGGGGATTTAGGTTT 60.034 55.000 0.00 0.00 0.00 3.27
196 197 1.212250 ACGGCTGGGGGATTTAGGTT 61.212 55.000 0.00 0.00 0.00 3.50
197 198 1.618447 ACGGCTGGGGGATTTAGGT 60.618 57.895 0.00 0.00 0.00 3.08
198 199 1.148498 GACGGCTGGGGGATTTAGG 59.852 63.158 0.00 0.00 0.00 2.69
199 200 1.227556 CGACGGCTGGGGGATTTAG 60.228 63.158 0.00 0.00 0.00 1.85
200 201 2.904905 CGACGGCTGGGGGATTTA 59.095 61.111 0.00 0.00 0.00 1.40
201 202 4.796495 GCGACGGCTGGGGGATTT 62.796 66.667 0.00 0.00 35.83 2.17
217 218 1.534595 GAGCATATTACAGCAGCAGGC 59.465 52.381 0.00 0.00 45.30 4.85
218 219 2.149578 GGAGCATATTACAGCAGCAGG 58.850 52.381 0.00 0.00 0.00 4.85
219 220 2.806818 CAGGAGCATATTACAGCAGCAG 59.193 50.000 0.00 0.00 0.00 4.24
220 221 2.171237 ACAGGAGCATATTACAGCAGCA 59.829 45.455 0.00 0.00 0.00 4.41
221 222 2.843701 ACAGGAGCATATTACAGCAGC 58.156 47.619 0.00 0.00 0.00 5.25
222 223 5.824904 AAAACAGGAGCATATTACAGCAG 57.175 39.130 0.00 0.00 0.00 4.24
223 224 5.945784 AGAAAAACAGGAGCATATTACAGCA 59.054 36.000 0.00 0.00 0.00 4.41
224 225 6.442513 AGAAAAACAGGAGCATATTACAGC 57.557 37.500 0.00 0.00 0.00 4.40
225 226 7.121168 TGGAAGAAAAACAGGAGCATATTACAG 59.879 37.037 0.00 0.00 0.00 2.74
226 227 6.945435 TGGAAGAAAAACAGGAGCATATTACA 59.055 34.615 0.00 0.00 0.00 2.41
227 228 7.391148 TGGAAGAAAAACAGGAGCATATTAC 57.609 36.000 0.00 0.00 0.00 1.89
228 229 8.415950 TTTGGAAGAAAAACAGGAGCATATTA 57.584 30.769 0.00 0.00 0.00 0.98
229 230 6.916360 TTGGAAGAAAAACAGGAGCATATT 57.084 33.333 0.00 0.00 0.00 1.28
230 231 6.916360 TTTGGAAGAAAAACAGGAGCATAT 57.084 33.333 0.00 0.00 0.00 1.78
231 232 6.267471 ACATTTGGAAGAAAAACAGGAGCATA 59.733 34.615 0.00 0.00 0.00 3.14
232 233 5.070847 ACATTTGGAAGAAAAACAGGAGCAT 59.929 36.000 0.00 0.00 0.00 3.79
233 234 4.405358 ACATTTGGAAGAAAAACAGGAGCA 59.595 37.500 0.00 0.00 0.00 4.26
234 235 4.948847 ACATTTGGAAGAAAAACAGGAGC 58.051 39.130 0.00 0.00 0.00 4.70
235 236 6.340522 ACAACATTTGGAAGAAAAACAGGAG 58.659 36.000 0.00 0.00 34.12 3.69
236 237 6.293004 ACAACATTTGGAAGAAAAACAGGA 57.707 33.333 0.00 0.00 34.12 3.86
237 238 6.371271 ACAACAACATTTGGAAGAAAAACAGG 59.629 34.615 0.00 0.00 34.12 4.00
238 239 7.363205 ACAACAACATTTGGAAGAAAAACAG 57.637 32.000 0.00 0.00 34.12 3.16
239 240 7.736447 AACAACAACATTTGGAAGAAAAACA 57.264 28.000 0.00 0.00 34.12 2.83
240 241 9.457110 AAAAACAACAACATTTGGAAGAAAAAC 57.543 25.926 0.00 0.00 34.12 2.43
265 266 0.181587 TCCCCACGAGCAGTCAAAAA 59.818 50.000 0.00 0.00 0.00 1.94
266 267 0.534203 GTCCCCACGAGCAGTCAAAA 60.534 55.000 0.00 0.00 0.00 2.44
267 268 1.070786 GTCCCCACGAGCAGTCAAA 59.929 57.895 0.00 0.00 0.00 2.69
268 269 2.741092 GTCCCCACGAGCAGTCAA 59.259 61.111 0.00 0.00 0.00 3.18
292 293 1.116308 AGGTTTTCAAAACCCACGGG 58.884 50.000 25.75 0.00 41.18 5.28
293 294 1.751924 TCAGGTTTTCAAAACCCACGG 59.248 47.619 25.75 14.42 41.18 4.94
294 295 3.380142 CATCAGGTTTTCAAAACCCACG 58.620 45.455 25.75 15.85 41.18 4.94
295 296 3.494223 CCCATCAGGTTTTCAAAACCCAC 60.494 47.826 25.75 4.19 41.18 4.61
296 297 2.703007 CCCATCAGGTTTTCAAAACCCA 59.297 45.455 25.75 14.85 41.18 4.51
297 298 3.401033 CCCATCAGGTTTTCAAAACCC 57.599 47.619 25.75 10.30 41.18 4.11
309 310 2.107204 CCCATCTCCTAAACCCATCAGG 59.893 54.545 0.00 0.00 43.78 3.86
310 311 2.487986 GCCCATCTCCTAAACCCATCAG 60.488 54.545 0.00 0.00 0.00 2.90
311 312 1.494721 GCCCATCTCCTAAACCCATCA 59.505 52.381 0.00 0.00 0.00 3.07
312 313 1.494721 TGCCCATCTCCTAAACCCATC 59.505 52.381 0.00 0.00 0.00 3.51
313 314 1.607225 TGCCCATCTCCTAAACCCAT 58.393 50.000 0.00 0.00 0.00 4.00
314 315 1.377690 TTGCCCATCTCCTAAACCCA 58.622 50.000 0.00 0.00 0.00 4.51
315 316 2.525105 TTTGCCCATCTCCTAAACCC 57.475 50.000 0.00 0.00 0.00 4.11
316 317 5.420725 AATTTTTGCCCATCTCCTAAACC 57.579 39.130 0.00 0.00 0.00 3.27
317 318 7.333423 GGTTAAATTTTTGCCCATCTCCTAAAC 59.667 37.037 0.00 0.00 0.00 2.01
318 319 7.390823 GGTTAAATTTTTGCCCATCTCCTAAA 58.609 34.615 0.00 0.00 0.00 1.85
319 320 6.070481 GGGTTAAATTTTTGCCCATCTCCTAA 60.070 38.462 15.35 0.00 36.96 2.69
320 321 5.423931 GGGTTAAATTTTTGCCCATCTCCTA 59.576 40.000 15.35 0.00 36.96 2.94
321 322 4.225042 GGGTTAAATTTTTGCCCATCTCCT 59.775 41.667 15.35 0.00 36.96 3.69
322 323 4.513442 GGGTTAAATTTTTGCCCATCTCC 58.487 43.478 15.35 0.00 36.96 3.71
323 324 4.513442 GGGGTTAAATTTTTGCCCATCTC 58.487 43.478 19.43 5.32 37.98 2.75
324 325 3.055458 CGGGGTTAAATTTTTGCCCATCT 60.055 43.478 19.43 0.00 37.98 2.90
325 326 3.266636 CGGGGTTAAATTTTTGCCCATC 58.733 45.455 19.43 7.93 37.98 3.51
326 327 2.616765 GCGGGGTTAAATTTTTGCCCAT 60.617 45.455 19.43 0.00 37.98 4.00
327 328 1.270893 GCGGGGTTAAATTTTTGCCCA 60.271 47.619 19.43 0.00 37.98 5.36
328 329 1.270893 TGCGGGGTTAAATTTTTGCCC 60.271 47.619 13.07 13.07 36.55 5.36
329 330 1.801771 GTGCGGGGTTAAATTTTTGCC 59.198 47.619 0.00 0.00 0.00 4.52
330 331 2.222213 GTGTGCGGGGTTAAATTTTTGC 59.778 45.455 0.00 0.00 0.00 3.68
331 332 2.473235 CGTGTGCGGGGTTAAATTTTTG 59.527 45.455 0.00 0.00 0.00 2.44
332 333 2.101082 ACGTGTGCGGGGTTAAATTTTT 59.899 40.909 0.00 0.00 43.45 1.94
333 334 1.682323 ACGTGTGCGGGGTTAAATTTT 59.318 42.857 0.00 0.00 43.45 1.82
334 335 1.320507 ACGTGTGCGGGGTTAAATTT 58.679 45.000 0.00 0.00 43.45 1.82
335 336 1.001158 CAACGTGTGCGGGGTTAAATT 60.001 47.619 0.00 0.00 43.45 1.82
336 337 0.594110 CAACGTGTGCGGGGTTAAAT 59.406 50.000 0.00 0.00 43.45 1.40
337 338 0.463295 TCAACGTGTGCGGGGTTAAA 60.463 50.000 0.00 0.00 43.45 1.52
338 339 0.250381 ATCAACGTGTGCGGGGTTAA 60.250 50.000 0.00 0.00 43.45 2.01
339 340 0.951525 CATCAACGTGTGCGGGGTTA 60.952 55.000 0.00 0.00 43.45 2.85
340 341 2.112297 ATCAACGTGTGCGGGGTT 59.888 55.556 0.00 0.00 43.45 4.11
341 342 2.668212 CATCAACGTGTGCGGGGT 60.668 61.111 0.00 0.00 43.45 4.95
342 343 3.430862 CCATCAACGTGTGCGGGG 61.431 66.667 0.00 0.00 43.45 5.73
343 344 3.430862 CCCATCAACGTGTGCGGG 61.431 66.667 0.00 0.00 43.45 6.13
344 345 3.430862 CCCCATCAACGTGTGCGG 61.431 66.667 0.00 0.00 43.45 5.69
345 346 2.358125 TCCCCATCAACGTGTGCG 60.358 61.111 0.00 0.00 44.93 5.34
346 347 1.577328 CTGTCCCCATCAACGTGTGC 61.577 60.000 0.00 0.00 0.00 4.57
347 348 0.034756 TCTGTCCCCATCAACGTGTG 59.965 55.000 0.00 0.00 0.00 3.82
348 349 0.321671 CTCTGTCCCCATCAACGTGT 59.678 55.000 0.00 0.00 0.00 4.49
349 350 0.608130 TCTCTGTCCCCATCAACGTG 59.392 55.000 0.00 0.00 0.00 4.49
350 351 0.608640 GTCTCTGTCCCCATCAACGT 59.391 55.000 0.00 0.00 0.00 3.99
351 352 0.458543 CGTCTCTGTCCCCATCAACG 60.459 60.000 0.00 0.00 0.00 4.10
352 353 0.108138 CCGTCTCTGTCCCCATCAAC 60.108 60.000 0.00 0.00 0.00 3.18
353 354 1.264749 CCCGTCTCTGTCCCCATCAA 61.265 60.000 0.00 0.00 0.00 2.57
354 355 1.685765 CCCGTCTCTGTCCCCATCA 60.686 63.158 0.00 0.00 0.00 3.07
355 356 1.265454 AACCCGTCTCTGTCCCCATC 61.265 60.000 0.00 0.00 0.00 3.51
356 357 0.840722 AAACCCGTCTCTGTCCCCAT 60.841 55.000 0.00 0.00 0.00 4.00
357 358 1.460689 AAACCCGTCTCTGTCCCCA 60.461 57.895 0.00 0.00 0.00 4.96
358 359 1.003718 CAAACCCGTCTCTGTCCCC 60.004 63.158 0.00 0.00 0.00 4.81
359 360 0.602905 CACAAACCCGTCTCTGTCCC 60.603 60.000 0.00 0.00 0.00 4.46
360 361 0.391597 TCACAAACCCGTCTCTGTCC 59.608 55.000 0.00 0.00 0.00 4.02
361 362 2.457366 ATCACAAACCCGTCTCTGTC 57.543 50.000 0.00 0.00 0.00 3.51
362 363 2.930826 AATCACAAACCCGTCTCTGT 57.069 45.000 0.00 0.00 0.00 3.41
363 364 3.815401 AGAAAATCACAAACCCGTCTCTG 59.185 43.478 0.00 0.00 0.00 3.35
364 365 4.065789 GAGAAAATCACAAACCCGTCTCT 58.934 43.478 0.00 0.00 0.00 3.10
365 366 3.120649 CGAGAAAATCACAAACCCGTCTC 60.121 47.826 0.00 0.00 0.00 3.36
366 367 2.806244 CGAGAAAATCACAAACCCGTCT 59.194 45.455 0.00 0.00 0.00 4.18
367 368 2.546789 ACGAGAAAATCACAAACCCGTC 59.453 45.455 0.00 0.00 0.00 4.79
368 369 2.289547 CACGAGAAAATCACAAACCCGT 59.710 45.455 0.00 0.00 0.00 5.28
369 370 2.350388 CCACGAGAAAATCACAAACCCG 60.350 50.000 0.00 0.00 0.00 5.28
370 371 2.030274 CCCACGAGAAAATCACAAACCC 60.030 50.000 0.00 0.00 0.00 4.11
371 372 2.030274 CCCCACGAGAAAATCACAAACC 60.030 50.000 0.00 0.00 0.00 3.27
372 373 2.882137 TCCCCACGAGAAAATCACAAAC 59.118 45.455 0.00 0.00 0.00 2.93
373 374 3.216187 TCCCCACGAGAAAATCACAAA 57.784 42.857 0.00 0.00 0.00 2.83
374 375 2.940994 TCCCCACGAGAAAATCACAA 57.059 45.000 0.00 0.00 0.00 3.33
375 376 2.617788 CCATCCCCACGAGAAAATCACA 60.618 50.000 0.00 0.00 0.00 3.58
376 377 2.017049 CCATCCCCACGAGAAAATCAC 58.983 52.381 0.00 0.00 0.00 3.06
377 378 1.064758 CCCATCCCCACGAGAAAATCA 60.065 52.381 0.00 0.00 0.00 2.57
378 379 1.064685 ACCCATCCCCACGAGAAAATC 60.065 52.381 0.00 0.00 0.00 2.17
379 380 0.999712 ACCCATCCCCACGAGAAAAT 59.000 50.000 0.00 0.00 0.00 1.82
380 381 0.774908 AACCCATCCCCACGAGAAAA 59.225 50.000 0.00 0.00 0.00 2.29
381 382 0.774908 AAACCCATCCCCACGAGAAA 59.225 50.000 0.00 0.00 0.00 2.52
382 383 0.037590 CAAACCCATCCCCACGAGAA 59.962 55.000 0.00 0.00 0.00 2.87
383 384 1.682849 CAAACCCATCCCCACGAGA 59.317 57.895 0.00 0.00 0.00 4.04
384 385 1.378514 CCAAACCCATCCCCACGAG 60.379 63.158 0.00 0.00 0.00 4.18
385 386 2.760477 CCAAACCCATCCCCACGA 59.240 61.111 0.00 0.00 0.00 4.35
386 387 2.362375 CCCAAACCCATCCCCACG 60.362 66.667 0.00 0.00 0.00 4.94
387 388 2.683572 GCCCAAACCCATCCCCAC 60.684 66.667 0.00 0.00 0.00 4.61
388 389 2.745255 CTTGCCCAAACCCATCCCCA 62.745 60.000 0.00 0.00 0.00 4.96
389 390 1.989508 CTTGCCCAAACCCATCCCC 60.990 63.158 0.00 0.00 0.00 4.81
390 391 2.659063 GCTTGCCCAAACCCATCCC 61.659 63.158 0.00 0.00 0.00 3.85
391 392 1.479368 TTGCTTGCCCAAACCCATCC 61.479 55.000 0.00 0.00 0.00 3.51
392 393 0.396060 TTTGCTTGCCCAAACCCATC 59.604 50.000 0.00 0.00 30.28 3.51
393 394 0.842635 TTTTGCTTGCCCAAACCCAT 59.157 45.000 0.00 0.00 34.68 4.00
394 395 0.107459 GTTTTGCTTGCCCAAACCCA 60.107 50.000 6.35 0.00 34.68 4.51
395 396 0.817634 GGTTTTGCTTGCCCAAACCC 60.818 55.000 18.39 2.72 34.68 4.11
396 397 0.817634 GGGTTTTGCTTGCCCAAACC 60.818 55.000 19.86 19.86 41.93 3.27
397 398 1.157257 CGGGTTTTGCTTGCCCAAAC 61.157 55.000 0.00 8.24 42.44 2.93
398 399 1.144936 CGGGTTTTGCTTGCCCAAA 59.855 52.632 0.00 0.00 42.44 3.28
399 400 2.801631 CCGGGTTTTGCTTGCCCAA 61.802 57.895 0.00 0.00 42.44 4.12
400 401 3.230245 CCGGGTTTTGCTTGCCCA 61.230 61.111 0.00 0.00 42.44 5.36
401 402 3.230990 ACCGGGTTTTGCTTGCCC 61.231 61.111 6.32 0.00 39.03 5.36
402 403 2.028925 CACCGGGTTTTGCTTGCC 59.971 61.111 6.32 0.00 0.00 4.52
403 404 2.028925 CCACCGGGTTTTGCTTGC 59.971 61.111 6.32 0.00 0.00 4.01
404 405 2.733945 CCCACCGGGTTTTGCTTG 59.266 61.111 6.32 0.00 38.25 4.01
426 427 1.002624 TCAAGATGGCAACGGGGAC 60.003 57.895 0.00 0.00 42.51 4.46
427 428 1.002624 GTCAAGATGGCAACGGGGA 60.003 57.895 0.00 0.00 42.51 4.81
428 429 2.046285 GGTCAAGATGGCAACGGGG 61.046 63.158 0.00 0.00 42.51 5.73
429 430 2.046285 GGGTCAAGATGGCAACGGG 61.046 63.158 0.00 0.00 42.51 5.28
430 431 0.680921 ATGGGTCAAGATGGCAACGG 60.681 55.000 0.00 0.00 42.51 4.44
431 432 0.452987 CATGGGTCAAGATGGCAACG 59.547 55.000 0.00 0.00 42.51 4.10
432 433 1.747355 CTCATGGGTCAAGATGGCAAC 59.253 52.381 0.00 0.00 0.00 4.17
433 434 1.956636 GCTCATGGGTCAAGATGGCAA 60.957 52.381 0.00 0.00 0.00 4.52
434 435 0.394762 GCTCATGGGTCAAGATGGCA 60.395 55.000 0.00 0.00 0.00 4.92
435 436 1.442526 CGCTCATGGGTCAAGATGGC 61.443 60.000 0.00 0.00 0.00 4.40
436 437 0.107508 ACGCTCATGGGTCAAGATGG 60.108 55.000 0.00 0.00 33.98 3.51
437 438 1.742761 AACGCTCATGGGTCAAGATG 58.257 50.000 0.00 0.00 38.46 2.90
438 439 2.086869 CAAACGCTCATGGGTCAAGAT 58.913 47.619 0.00 0.00 38.46 2.40
439 440 1.071542 TCAAACGCTCATGGGTCAAGA 59.928 47.619 0.00 0.00 38.46 3.02
440 441 1.466167 CTCAAACGCTCATGGGTCAAG 59.534 52.381 0.00 0.00 38.46 3.02
441 442 1.202758 ACTCAAACGCTCATGGGTCAA 60.203 47.619 0.00 0.00 38.46 3.18
442 443 0.396435 ACTCAAACGCTCATGGGTCA 59.604 50.000 0.00 0.00 38.46 4.02
443 444 0.798776 CACTCAAACGCTCATGGGTC 59.201 55.000 0.00 0.00 38.46 4.46
444 445 0.108585 ACACTCAAACGCTCATGGGT 59.891 50.000 0.00 0.00 41.29 4.51
445 446 0.798776 GACACTCAAACGCTCATGGG 59.201 55.000 0.00 0.00 0.00 4.00
446 447 1.462283 CAGACACTCAAACGCTCATGG 59.538 52.381 0.00 0.00 0.00 3.66
447 448 2.407090 TCAGACACTCAAACGCTCATG 58.593 47.619 0.00 0.00 0.00 3.07
448 449 2.820059 TCAGACACTCAAACGCTCAT 57.180 45.000 0.00 0.00 0.00 2.90
449 450 2.595124 TTCAGACACTCAAACGCTCA 57.405 45.000 0.00 0.00 0.00 4.26
450 451 4.474226 AAATTCAGACACTCAAACGCTC 57.526 40.909 0.00 0.00 0.00 5.03
451 452 5.934625 AGATAAATTCAGACACTCAAACGCT 59.065 36.000 0.00 0.00 0.00 5.07
452 453 6.170675 AGATAAATTCAGACACTCAAACGC 57.829 37.500 0.00 0.00 0.00 4.84
453 454 8.467402 ACTAGATAAATTCAGACACTCAAACG 57.533 34.615 0.00 0.00 0.00 3.60
454 455 8.587950 CGACTAGATAAATTCAGACACTCAAAC 58.412 37.037 0.00 0.00 0.00 2.93
463 464 7.991460 TCTACAGTCCGACTAGATAAATTCAGA 59.009 37.037 0.00 0.00 0.00 3.27
467 468 8.466617 ACATCTACAGTCCGACTAGATAAATT 57.533 34.615 11.79 0.00 26.15 1.82
480 481 8.950208 AATTTAGCTTAGAACATCTACAGTCC 57.050 34.615 0.00 0.00 0.00 3.85
563 576 5.636965 CAGTTGGATTATAGATTCCGCTGAG 59.363 44.000 13.10 0.00 38.67 3.35
564 577 5.511373 CCAGTTGGATTATAGATTCCGCTGA 60.511 44.000 17.10 0.00 38.67 4.26
567 580 4.894784 TCCAGTTGGATTATAGATTCCGC 58.105 43.478 0.00 0.00 39.78 5.54
621 637 3.058224 CCGGGAAAAGTTGTCTTCATGAC 60.058 47.826 0.00 0.00 45.54 3.06
622 638 3.146066 CCGGGAAAAGTTGTCTTCATGA 58.854 45.455 0.00 0.00 32.90 3.07
623 639 3.058224 GTCCGGGAAAAGTTGTCTTCATG 60.058 47.826 0.00 0.00 32.90 3.07
624 640 3.146847 GTCCGGGAAAAGTTGTCTTCAT 58.853 45.455 0.00 0.00 32.90 2.57
625 641 2.567985 GTCCGGGAAAAGTTGTCTTCA 58.432 47.619 0.00 0.00 32.90 3.02
626 642 1.529865 CGTCCGGGAAAAGTTGTCTTC 59.470 52.381 0.00 0.00 32.90 2.87
627 643 1.589803 CGTCCGGGAAAAGTTGTCTT 58.410 50.000 0.00 0.00 35.14 3.01
628 644 0.250166 CCGTCCGGGAAAAGTTGTCT 60.250 55.000 0.00 0.00 38.47 3.41
629 645 0.249996 TCCGTCCGGGAAAAGTTGTC 60.250 55.000 0.00 0.00 43.62 3.18
630 646 0.250166 CTCCGTCCGGGAAAAGTTGT 60.250 55.000 0.00 0.00 46.61 3.32
631 647 0.953960 CCTCCGTCCGGGAAAAGTTG 60.954 60.000 0.00 0.00 46.61 3.16
632 648 1.123246 TCCTCCGTCCGGGAAAAGTT 61.123 55.000 0.00 0.00 46.61 2.66
633 649 1.123246 TTCCTCCGTCCGGGAAAAGT 61.123 55.000 0.00 0.00 46.61 2.66
634 650 0.391263 CTTCCTCCGTCCGGGAAAAG 60.391 60.000 0.00 3.64 46.61 2.27
635 651 1.123246 ACTTCCTCCGTCCGGGAAAA 61.123 55.000 0.00 0.00 46.61 2.29
636 652 0.251742 TACTTCCTCCGTCCGGGAAA 60.252 55.000 0.00 0.00 46.61 3.13
637 653 0.967380 GTACTTCCTCCGTCCGGGAA 60.967 60.000 0.00 1.86 46.61 3.97
638 654 1.379044 GTACTTCCTCCGTCCGGGA 60.379 63.158 0.00 0.00 44.68 5.14
639 655 0.107017 TAGTACTTCCTCCGTCCGGG 60.107 60.000 0.00 0.00 35.59 5.73
640 656 1.020437 GTAGTACTTCCTCCGTCCGG 58.980 60.000 0.00 0.00 0.00 5.14
641 657 0.654683 CGTAGTACTTCCTCCGTCCG 59.345 60.000 0.00 0.00 0.00 4.79
642 658 1.743996 ACGTAGTACTTCCTCCGTCC 58.256 55.000 0.00 0.00 41.94 4.79
643 659 4.631813 TCTTTACGTAGTACTTCCTCCGTC 59.368 45.833 0.00 0.00 45.76 4.79
644 660 4.579869 TCTTTACGTAGTACTTCCTCCGT 58.420 43.478 0.00 5.20 45.76 4.69
645 661 5.551760 TTCTTTACGTAGTACTTCCTCCG 57.448 43.478 0.00 0.00 45.76 4.63
893 2424 1.172180 AGGATGTGTGTGTTTGCCGG 61.172 55.000 0.00 0.00 0.00 6.13
910 2441 7.607991 TGCTAATCTTAACAAAAGAGGAAGAGG 59.392 37.037 0.00 0.00 30.14 3.69
947 2488 8.043710 AGGAAAGATTAGTGGAAGTGATTAGTG 58.956 37.037 0.00 0.00 0.00 2.74
966 2516 2.910688 AGTGAAACGCAGAGGAAAGA 57.089 45.000 0.00 0.00 45.86 2.52
968 2518 2.912771 TGAAGTGAAACGCAGAGGAAA 58.087 42.857 0.00 0.00 45.86 3.13
1142 2720 2.338620 CAACCACGAGGAGCACGA 59.661 61.111 5.68 0.00 38.69 4.35
1278 2856 1.153939 CTTCTCTGACACGCCGGAG 60.154 63.158 5.05 3.72 40.14 4.63
1392 2979 1.524008 CGGGCTGGAAGTGAAAACCC 61.524 60.000 0.00 0.00 35.30 4.11
1459 3048 3.404224 TGGCATCGGTAACAACTAACA 57.596 42.857 0.00 0.00 0.00 2.41
1462 3051 2.285083 GCATGGCATCGGTAACAACTA 58.715 47.619 0.00 0.00 0.00 2.24
1463 3052 1.094785 GCATGGCATCGGTAACAACT 58.905 50.000 0.00 0.00 0.00 3.16
1464 3053 0.808125 TGCATGGCATCGGTAACAAC 59.192 50.000 0.00 0.00 31.71 3.32
1783 3453 2.114411 GTCGGTGGGGAAAGCCAA 59.886 61.111 0.00 0.00 35.15 4.52
1803 3473 0.690192 TGATGAGCAAAGGGTCGGAA 59.310 50.000 0.00 0.00 44.47 4.30
1920 3590 1.153289 GAGCCGCCATGTGTCATCT 60.153 57.895 0.00 0.00 0.00 2.90
2545 4407 3.517602 CCTTCAATCATTCCGACGTGTA 58.482 45.455 0.00 0.00 0.00 2.90
2557 4829 2.644887 GCACACAGCCCTTCAATCA 58.355 52.632 0.00 0.00 37.23 2.57
2576 4848 2.897207 CAAGCCCATGTGCCCATG 59.103 61.111 1.66 1.66 46.65 3.66
2577 4849 3.078836 GCAAGCCCATGTGCCCAT 61.079 61.111 0.00 0.00 34.58 4.00
2578 4850 4.617556 TGCAAGCCCATGTGCCCA 62.618 61.111 0.00 0.00 40.14 5.36
2579 4851 2.187896 ATTTGCAAGCCCATGTGCCC 62.188 55.000 0.00 0.00 40.14 5.36
2580 4852 1.022451 CATTTGCAAGCCCATGTGCC 61.022 55.000 0.00 0.00 40.14 5.01
2581 4853 0.037139 TCATTTGCAAGCCCATGTGC 60.037 50.000 0.00 0.00 41.29 4.57
2582 4854 2.684001 ATCATTTGCAAGCCCATGTG 57.316 45.000 0.00 0.00 0.00 3.21
2583 4855 5.510179 GCTATTATCATTTGCAAGCCCATGT 60.510 40.000 0.00 0.00 0.00 3.21
2584 4856 4.927425 GCTATTATCATTTGCAAGCCCATG 59.073 41.667 0.00 0.41 0.00 3.66
2585 4857 4.836736 AGCTATTATCATTTGCAAGCCCAT 59.163 37.500 0.00 0.00 0.00 4.00
2586 4858 4.038282 CAGCTATTATCATTTGCAAGCCCA 59.962 41.667 0.00 0.00 0.00 5.36
2587 4859 4.553323 CAGCTATTATCATTTGCAAGCCC 58.447 43.478 0.00 0.00 0.00 5.19
2588 4860 3.985925 GCAGCTATTATCATTTGCAAGCC 59.014 43.478 0.00 0.00 0.00 4.35
2589 4861 4.613944 TGCAGCTATTATCATTTGCAAGC 58.386 39.130 0.00 0.00 38.47 4.01
2591 4863 5.127519 AGGTTGCAGCTATTATCATTTGCAA 59.872 36.000 0.00 0.00 45.84 4.08
2608 4880 1.832883 ATAATTCGTGCCAGGTTGCA 58.167 45.000 0.00 0.00 39.37 4.08
2614 4886 9.676195 CTGATATCTATCTATAATTCGTGCCAG 57.324 37.037 3.98 0.00 33.88 4.85
2735 6412 1.066716 ACACATCCACAATGGCATTGC 60.067 47.619 33.90 0.00 43.98 3.56
2750 6543 4.677779 GCAGAGTTTGTTTGTTGGACACAT 60.678 41.667 0.00 0.00 34.43 3.21
2830 6665 6.205853 TGGTTCGTGCTAACAGAAATTATGTT 59.794 34.615 10.90 10.90 43.15 2.71
2878 6957 5.992217 ACTGTAACTCAAGACAAAGACATCC 59.008 40.000 0.00 0.00 0.00 3.51
2900 6979 6.023603 TCCTTTTCCTTGTAGTATCCTCACT 58.976 40.000 0.00 0.00 0.00 3.41
2901 6980 6.295719 TCCTTTTCCTTGTAGTATCCTCAC 57.704 41.667 0.00 0.00 0.00 3.51
2902 6981 6.945636 TTCCTTTTCCTTGTAGTATCCTCA 57.054 37.500 0.00 0.00 0.00 3.86
2904 6983 7.086685 TGTTTCCTTTTCCTTGTAGTATCCT 57.913 36.000 0.00 0.00 0.00 3.24
2907 7021 8.934023 TCATTGTTTCCTTTTCCTTGTAGTAT 57.066 30.769 0.00 0.00 0.00 2.12
2909 7023 7.839680 ATCATTGTTTCCTTTTCCTTGTAGT 57.160 32.000 0.00 0.00 0.00 2.73
2913 7027 9.362539 CATTCTATCATTGTTTCCTTTTCCTTG 57.637 33.333 0.00 0.00 0.00 3.61
2923 7037 7.559590 ACTGCTACCATTCTATCATTGTTTC 57.440 36.000 0.00 0.00 0.00 2.78
2953 7067 8.004087 ACTCGATCATCCATTTCAATTCATTT 57.996 30.769 0.00 0.00 0.00 2.32
2956 7070 7.275183 ACTACTCGATCATCCATTTCAATTCA 58.725 34.615 0.00 0.00 0.00 2.57
2960 7074 6.639563 TGAACTACTCGATCATCCATTTCAA 58.360 36.000 0.00 0.00 0.00 2.69
2964 7078 7.011763 CACAATTGAACTACTCGATCATCCATT 59.988 37.037 13.59 0.00 0.00 3.16
2974 7088 5.333339 CCAACTGTCACAATTGAACTACTCG 60.333 44.000 13.59 3.39 31.90 4.18
2975 7089 5.527582 ACCAACTGTCACAATTGAACTACTC 59.472 40.000 13.59 0.00 31.90 2.59
2978 7092 7.521423 GCATTACCAACTGTCACAATTGAACTA 60.521 37.037 13.59 1.16 31.90 2.24
3024 7139 8.548721 GTTGCATTGGTGTATATTGTACTACTC 58.451 37.037 0.00 0.00 0.00 2.59
3070 7185 5.782047 TCATGGGTATGAGTTTTGCTTTTG 58.218 37.500 0.00 0.00 38.37 2.44
3072 7187 6.211184 TGATTCATGGGTATGAGTTTTGCTTT 59.789 34.615 0.00 0.00 43.76 3.51
3117 7232 3.476552 TCCTAGTTTTGTGCAGACAAGG 58.523 45.455 0.00 0.00 43.03 3.61
3120 7235 5.932303 GTCTAATCCTAGTTTTGTGCAGACA 59.068 40.000 0.00 0.00 31.30 3.41
3129 7244 9.078990 CCCTTTTTCTTGTCTAATCCTAGTTTT 57.921 33.333 0.00 0.00 0.00 2.43
3148 7263 3.903467 AGCAGACAAGACTTCCCTTTTT 58.097 40.909 0.00 0.00 0.00 1.94
3157 7272 1.073897 GGGGCAAGCAGACAAGACT 59.926 57.895 0.00 0.00 0.00 3.24
3331 7533 2.701780 CGTCTCCACCTCCTCCACG 61.702 68.421 0.00 0.00 0.00 4.94
3482 7684 2.721167 CGACATCCGCCTCCTTGGA 61.721 63.158 0.00 0.00 38.35 3.53
3755 7957 0.324368 TCCACTAGCACCCTCATCGT 60.324 55.000 0.00 0.00 0.00 3.73
3758 7960 0.252696 TGGTCCACTAGCACCCTCAT 60.253 55.000 4.13 0.00 0.00 2.90
3901 8103 1.606350 CGACGAGCCTTGTGACGTTC 61.606 60.000 0.00 0.00 39.04 3.95
3910 8112 0.965866 TCTCATGGACGACGAGCCTT 60.966 55.000 0.00 0.00 0.00 4.35
4123 8330 5.278315 GGTGGTCATTGGTAGAAAACAGAAC 60.278 44.000 0.00 0.00 0.00 3.01
4230 8438 2.494471 CTGTAACACCGTGGTAGGATGA 59.506 50.000 3.03 0.00 34.73 2.92
4270 8478 5.656859 TCCTGAGATCGAAAATCTCCAACTA 59.343 40.000 11.10 0.00 42.83 2.24
4323 8531 0.179468 ACTGTGTTGTGGCCGTAGTT 59.821 50.000 0.00 0.00 0.00 2.24
4326 8534 0.178301 TGAACTGTGTTGTGGCCGTA 59.822 50.000 0.00 0.00 0.00 4.02
4377 8585 5.462034 TTTGAATTTGAACGCAAAACCTG 57.538 34.783 0.00 0.00 46.19 4.00
4415 8623 7.671398 CCCCAAGAAGCTATATTACCATTTGAT 59.329 37.037 0.00 0.00 0.00 2.57
4432 8640 2.351276 CCGGTCCACCCCAAGAAG 59.649 66.667 0.00 0.00 0.00 2.85
4450 8658 1.066454 CCAAACCGGTCACCAGTTTTC 59.934 52.381 8.04 0.00 31.54 2.29
4475 8683 9.503427 GGATTTTACTCTTGGTTGATAATTTCG 57.497 33.333 0.00 0.00 0.00 3.46
4485 8693 6.552008 TGGATCAAGGATTTTACTCTTGGTT 58.448 36.000 0.00 0.00 38.59 3.67
4486 8694 6.012508 TCTGGATCAAGGATTTTACTCTTGGT 60.013 38.462 0.00 0.00 38.59 3.67
4487 8695 6.317391 GTCTGGATCAAGGATTTTACTCTTGG 59.683 42.308 0.00 0.00 38.59 3.61
4488 8696 7.065563 CAGTCTGGATCAAGGATTTTACTCTTG 59.934 40.741 0.00 0.00 39.20 3.02
4489 8697 7.038017 TCAGTCTGGATCAAGGATTTTACTCTT 60.038 37.037 0.00 0.00 0.00 2.85
4509 8717 0.780637 TGAGTCCTCCAGGTCAGTCT 59.219 55.000 0.00 0.00 36.34 3.24
4514 8722 0.539051 CCATGTGAGTCCTCCAGGTC 59.461 60.000 0.00 0.00 36.34 3.85
4550 8760 8.781067 TTAGTGAACATTTTTCTTTGATGTCG 57.219 30.769 0.00 0.00 33.16 4.35
4589 8799 8.311109 AGTACAAGAAAATGAACAAAACACCTT 58.689 29.630 0.00 0.00 0.00 3.50
4683 8895 5.437060 AGTACAGAACAAAGACAACCATGT 58.563 37.500 0.00 0.00 44.25 3.21
4777 8989 2.293170 TCGTTGCATGAAACAAGACCA 58.707 42.857 16.90 0.00 0.00 4.02
4778 8990 3.492313 GATCGTTGCATGAAACAAGACC 58.508 45.455 16.90 0.00 0.00 3.85
4780 8992 3.063485 TCGATCGTTGCATGAAACAAGA 58.937 40.909 16.90 6.97 0.00 3.02
4781 8993 3.155998 GTCGATCGTTGCATGAAACAAG 58.844 45.455 16.90 1.32 0.00 3.16
4793 9009 3.062639 GCACAGATTGATTGTCGATCGTT 59.937 43.478 15.94 0.00 41.20 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.