Multiple sequence alignment - TraesCS6A01G023100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G023100 chr6A 100.000 5382 0 0 1 5382 11559112 11553731 0.000000e+00 9939.0
1 TraesCS6A01G023100 chr6A 88.229 994 110 4 1661 2647 11571117 11570124 0.000000e+00 1181.0
2 TraesCS6A01G023100 chr6A 87.757 923 113 0 1678 2600 11590396 11589474 0.000000e+00 1079.0
3 TraesCS6A01G023100 chr6A 83.951 810 119 3 3384 4185 11569590 11568784 0.000000e+00 765.0
4 TraesCS6A01G023100 chr6A 78.691 779 84 37 823 1582 11571886 11571171 1.380000e-120 444.0
5 TraesCS6A01G023100 chr6A 83.151 457 58 14 1136 1584 11590911 11590466 3.020000e-107 399.0
6 TraesCS6A01G023100 chr6A 94.048 168 7 2 4965 5130 47670008 47670174 8.950000e-63 252.0
7 TraesCS6A01G023100 chr6A 93.750 144 8 1 2654 2796 589187386 589187529 1.170000e-51 215.0
8 TraesCS6A01G023100 chr6A 82.530 166 14 2 2887 3049 11570056 11569903 1.220000e-26 132.0
9 TraesCS6A01G023100 chr6A 76.829 246 36 13 2814 3054 11589409 11589180 9.470000e-23 119.0
10 TraesCS6A01G023100 chr6D 96.156 2003 63 6 600 2602 10046647 10044659 0.000000e+00 3260.0
11 TraesCS6A01G023100 chr6D 91.890 1492 97 15 2786 4261 10044571 10043088 0.000000e+00 2063.0
12 TraesCS6A01G023100 chr6D 87.851 996 114 4 1661 2649 10068589 10067594 0.000000e+00 1162.0
13 TraesCS6A01G023100 chr6D 86.002 993 134 2 1661 2649 10121798 10120807 0.000000e+00 1059.0
14 TraesCS6A01G023100 chr6D 86.928 918 120 0 1683 2600 10103706 10102789 0.000000e+00 1031.0
15 TraesCS6A01G023100 chr6D 84.938 810 114 2 3384 4185 10067052 10066243 0.000000e+00 813.0
16 TraesCS6A01G023100 chr6D 89.173 665 47 14 4317 4967 10043085 10042432 0.000000e+00 806.0
17 TraesCS6A01G023100 chr6D 83.503 788 122 6 3414 4195 10119962 10119177 0.000000e+00 728.0
18 TraesCS6A01G023100 chr6D 82.426 808 131 8 3395 4195 10102079 10101276 0.000000e+00 695.0
19 TraesCS6A01G023100 chr6D 88.868 530 50 3 7 536 10047320 10046800 1.260000e-180 643.0
20 TraesCS6A01G023100 chr6D 77.707 942 111 51 674 1582 10069521 10068646 8.100000e-133 484.0
21 TraesCS6A01G023100 chr6D 82.675 456 58 15 1136 1582 10104235 10103792 8.460000e-103 385.0
22 TraesCS6A01G023100 chr6D 81.678 453 62 16 1136 1582 10122337 10121900 1.840000e-94 357.0
23 TraesCS6A01G023100 chr6D 97.516 161 4 0 5127 5287 10042433 10042273 5.310000e-70 276.0
24 TraesCS6A01G023100 chr6D 90.323 186 16 2 4955 5139 352878317 352878501 5.390000e-60 243.0
25 TraesCS6A01G023100 chr6D 90.323 62 5 1 2589 2649 10044635 10044574 4.470000e-11 80.5
26 TraesCS6A01G023100 chr6B 90.190 1998 160 21 667 2649 18649057 18647081 0.000000e+00 2571.0
27 TraesCS6A01G023100 chr6B 87.597 2201 189 44 2786 4967 18647078 18644943 0.000000e+00 2475.0
28 TraesCS6A01G023100 chr6B 83.806 1482 194 30 1136 2600 18593122 18594574 0.000000e+00 1365.0
29 TraesCS6A01G023100 chr6B 87.311 993 119 4 1663 2648 18658376 18657384 0.000000e+00 1129.0
30 TraesCS6A01G023100 chr6B 87.288 944 115 3 1661 2600 18733885 18732943 0.000000e+00 1074.0
31 TraesCS6A01G023100 chr6B 83.758 825 120 6 3384 4198 18656825 18656005 0.000000e+00 769.0
32 TraesCS6A01G023100 chr6B 83.622 751 121 2 3449 4197 18595408 18596158 0.000000e+00 704.0
33 TraesCS6A01G023100 chr6B 83.690 748 121 1 3449 4195 18730796 18730049 0.000000e+00 704.0
34 TraesCS6A01G023100 chr6B 78.429 955 114 57 663 1584 18659329 18658434 6.130000e-149 538.0
35 TraesCS6A01G023100 chr6B 81.481 459 62 18 1136 1584 18734377 18733932 6.630000e-94 355.0
36 TraesCS6A01G023100 chr6B 92.188 256 11 2 5127 5380 18644944 18644696 2.380000e-93 353.0
37 TraesCS6A01G023100 chr6B 77.954 567 86 16 77 640 18650105 18649575 8.700000e-83 318.0
38 TraesCS6A01G023100 chr5A 94.083 169 8 1 4965 5131 687682584 687682752 6.920000e-64 255.0
39 TraesCS6A01G023100 chr5A 92.655 177 8 3 4956 5128 640948082 640948257 3.220000e-62 250.0
40 TraesCS6A01G023100 chr7B 93.529 170 9 1 4965 5132 714315941 714316110 8.950000e-63 252.0
41 TraesCS6A01G023100 chr7B 76.712 146 32 2 369 513 90798853 90798997 4.470000e-11 80.5
42 TraesCS6A01G023100 chr7A 94.012 167 9 1 4968 5133 324925191 324925025 8.950000e-63 252.0
43 TraesCS6A01G023100 chr3B 93.064 173 9 2 4963 5133 326997202 326997373 3.220000e-62 250.0
44 TraesCS6A01G023100 chr3B 78.808 151 29 3 372 521 508567543 508567395 1.230000e-16 99.0
45 TraesCS6A01G023100 chr4D 89.447 199 15 5 4950 5145 46028715 46028520 4.160000e-61 246.0
46 TraesCS6A01G023100 chr5D 89.947 189 17 1 4964 5150 322385099 322384911 5.390000e-60 243.0
47 TraesCS6A01G023100 chr1A 96.000 150 4 2 2649 2796 534625280 534625131 5.390000e-60 243.0
48 TraesCS6A01G023100 chr1A 95.139 144 6 1 2654 2796 576361809 576361666 5.420000e-55 226.0
49 TraesCS6A01G023100 chr4A 93.836 146 8 1 2652 2796 601291090 601290945 9.080000e-53 219.0
50 TraesCS6A01G023100 chr3A 93.793 145 5 3 2650 2791 735368663 735368520 1.170000e-51 215.0
51 TraesCS6A01G023100 chr3A 93.750 144 8 1 2654 2796 743181601 743181458 1.170000e-51 215.0
52 TraesCS6A01G023100 chr3A 93.750 144 6 2 2654 2796 692946241 692946382 4.220000e-51 213.0
53 TraesCS6A01G023100 chr2A 93.706 143 8 1 2655 2796 137240054 137239912 4.220000e-51 213.0
54 TraesCS6A01G023100 chr2A 93.706 143 7 2 2651 2791 762561337 762561479 4.220000e-51 213.0
55 TraesCS6A01G023100 chr4B 87.179 78 10 0 1685 1762 647623920 647623997 7.420000e-14 89.8
56 TraesCS6A01G023100 chrUn 86.667 75 10 0 1688 1762 260890824 260890750 3.450000e-12 84.2
57 TraesCS6A01G023100 chrUn 85.897 78 11 0 1685 1762 263767938 263768015 3.450000e-12 84.2
58 TraesCS6A01G023100 chrUn 76.923 143 32 1 375 516 30919081 30918939 4.470000e-11 80.5
59 TraesCS6A01G023100 chr3D 76.000 175 35 6 370 540 391571479 391571308 3.450000e-12 84.2
60 TraesCS6A01G023100 chr2D 75.524 143 33 2 376 516 627841790 627841648 9.670000e-08 69.4
61 TraesCS6A01G023100 chr7D 87.500 56 7 0 460 515 149735735 149735790 1.250000e-06 65.8
62 TraesCS6A01G023100 chr1B 96.875 32 1 0 485 516 166054892 166054923 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G023100 chr6A 11553731 11559112 5381 True 9939.000000 9939 100.000000 1 5382 1 chr6A.!!$R1 5381
1 TraesCS6A01G023100 chr6A 11568784 11571886 3102 True 630.500000 1181 83.350250 823 4185 4 chr6A.!!$R2 3362
2 TraesCS6A01G023100 chr6A 11589180 11590911 1731 True 532.333333 1079 82.579000 1136 3054 3 chr6A.!!$R3 1918
3 TraesCS6A01G023100 chr6D 10042273 10047320 5047 True 1188.083333 3260 92.321000 7 5287 6 chr6D.!!$R1 5280
4 TraesCS6A01G023100 chr6D 10066243 10069521 3278 True 819.666667 1162 83.498667 674 4185 3 chr6D.!!$R2 3511
5 TraesCS6A01G023100 chr6D 10119177 10122337 3160 True 714.666667 1059 83.727667 1136 4195 3 chr6D.!!$R4 3059
6 TraesCS6A01G023100 chr6D 10101276 10104235 2959 True 703.666667 1031 84.009667 1136 4195 3 chr6D.!!$R3 3059
7 TraesCS6A01G023100 chr6B 18644696 18650105 5409 True 1429.250000 2571 86.982250 77 5380 4 chr6B.!!$R1 5303
8 TraesCS6A01G023100 chr6B 18593122 18596158 3036 False 1034.500000 1365 83.714000 1136 4197 2 chr6B.!!$F1 3061
9 TraesCS6A01G023100 chr6B 18656005 18659329 3324 True 812.000000 1129 83.166000 663 4198 3 chr6B.!!$R2 3535
10 TraesCS6A01G023100 chr6B 18730049 18734377 4328 True 711.000000 1074 84.153000 1136 4195 3 chr6B.!!$R3 3059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 1449 0.179032 ACAATGAGTGGGTGCGACAA 60.179 50.0 0.0 0.0 0.00 3.18 F
1189 1858 0.391661 CTGGTGCCATGCTTCTACGT 60.392 55.0 0.0 0.0 0.00 3.57 F
2718 3553 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.0 0.0 0.0 40.13 2.24 F
3768 6774 0.108281 GACCCTTCGGCCTACTTGTC 60.108 60.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2718 3553 0.109153 TCTGTTGGCTGTGTGCATCT 59.891 50.0 0.0 0.0 45.15 2.90 R
2720 3555 0.179009 ACTCTGTTGGCTGTGTGCAT 60.179 50.0 0.0 0.0 45.15 3.96 R
3906 6912 1.180456 TGTTGCCGACGACCCTCTTA 61.180 55.0 0.0 0.0 0.00 2.10 R
5318 8347 1.644509 TCTGGGTCATGTAGTGTGCT 58.355 50.0 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.040132 TGAAGACACAAACCAAAAGAATTGATT 58.960 29.630 0.00 0.00 0.00 2.57
129 130 2.498481 CAATTGGGCCATGACACATCTT 59.502 45.455 7.26 0.00 0.00 2.40
137 138 3.689347 CCATGACACATCTTTTCCTCCA 58.311 45.455 0.00 0.00 0.00 3.86
148 149 1.841302 TTTCCTCCATGCACGCTCCT 61.841 55.000 0.00 0.00 0.00 3.69
188 189 2.739784 CAGCGAGCTCCCATAGGG 59.260 66.667 8.47 0.00 46.11 3.53
212 213 3.318539 GACACTACGGCTCGCGACA 62.319 63.158 3.71 0.00 0.00 4.35
217 218 3.252665 TACGGCTCGCGACAAACGA 62.253 57.895 19.29 5.12 45.77 3.85
332 333 5.947228 TGCAGAAAGAGTTGTGAATTAGG 57.053 39.130 0.00 0.00 29.43 2.69
335 336 6.545666 TGCAGAAAGAGTTGTGAATTAGGAAA 59.454 34.615 0.00 0.00 29.43 3.13
336 337 7.080724 GCAGAAAGAGTTGTGAATTAGGAAAG 58.919 38.462 0.00 0.00 29.43 2.62
368 374 4.739793 TGAAGAGTTGATTTTGGGATGGT 58.260 39.130 0.00 0.00 0.00 3.55
373 379 3.258123 AGTTGATTTTGGGATGGTTTCCG 59.742 43.478 0.00 0.00 46.52 4.30
387 393 2.159462 GGTTTCCGGACTGTCTACTACG 60.159 54.545 1.83 2.23 0.00 3.51
416 422 1.609501 CCTGTTCCGGTGAGGGAGA 60.610 63.158 0.00 0.00 41.52 3.71
480 486 2.861935 AGTCGTTGTTAGTTGGTTGACG 59.138 45.455 0.00 0.00 0.00 4.35
483 489 2.803956 CGTTGTTAGTTGGTTGACGGAT 59.196 45.455 0.00 0.00 0.00 4.18
487 493 3.322541 TGTTAGTTGGTTGACGGATCTGA 59.677 43.478 9.00 0.00 0.00 3.27
525 531 0.524862 CTGGTGTTCTGCCATGCTTC 59.475 55.000 0.00 0.00 35.19 3.86
536 542 6.812879 TCTGCCATGCTTCATTATGAATAG 57.187 37.500 8.17 0.00 35.59 1.73
537 543 6.536447 TCTGCCATGCTTCATTATGAATAGA 58.464 36.000 8.17 2.36 35.59 1.98
538 544 7.173032 TCTGCCATGCTTCATTATGAATAGAT 58.827 34.615 8.17 0.00 35.59 1.98
540 546 6.093082 TGCCATGCTTCATTATGAATAGATCG 59.907 38.462 8.17 0.00 35.59 3.69
541 547 6.457934 GCCATGCTTCATTATGAATAGATCGG 60.458 42.308 8.17 6.11 35.59 4.18
542 548 6.037940 CCATGCTTCATTATGAATAGATCGGG 59.962 42.308 8.17 1.41 35.59 5.14
543 549 6.114187 TGCTTCATTATGAATAGATCGGGT 57.886 37.500 8.17 0.00 35.59 5.28
544 550 6.533730 TGCTTCATTATGAATAGATCGGGTT 58.466 36.000 8.17 0.00 35.59 4.11
547 553 7.173218 GCTTCATTATGAATAGATCGGGTTTCA 59.827 37.037 8.17 5.54 35.59 2.69
548 554 7.962964 TCATTATGAATAGATCGGGTTTCAC 57.037 36.000 0.00 0.00 31.45 3.18
549 555 6.934645 TCATTATGAATAGATCGGGTTTCACC 59.065 38.462 0.00 0.00 37.60 4.02
781 1403 0.815734 GCCTGAGCCAACGAGTAGTA 59.184 55.000 0.00 0.00 0.00 1.82
783 1405 2.093106 CCTGAGCCAACGAGTAGTAGT 58.907 52.381 0.00 0.00 0.00 2.73
785 1407 3.693085 CCTGAGCCAACGAGTAGTAGTTA 59.307 47.826 0.00 0.00 0.00 2.24
789 1411 5.242393 TGAGCCAACGAGTAGTAGTTAAGTT 59.758 40.000 0.00 0.00 0.00 2.66
791 1413 6.155136 AGCCAACGAGTAGTAGTTAAGTTTC 58.845 40.000 0.00 0.00 0.00 2.78
792 1414 6.015603 AGCCAACGAGTAGTAGTTAAGTTTCT 60.016 38.462 0.00 0.00 0.00 2.52
793 1415 6.089150 GCCAACGAGTAGTAGTTAAGTTTCTG 59.911 42.308 0.00 0.00 0.00 3.02
794 1416 7.365741 CCAACGAGTAGTAGTTAAGTTTCTGA 58.634 38.462 0.00 0.00 0.00 3.27
810 1440 5.762218 AGTTTCTGAAGAGAACAATGAGTGG 59.238 40.000 0.00 0.00 37.97 4.00
819 1449 0.179032 ACAATGAGTGGGTGCGACAA 60.179 50.000 0.00 0.00 0.00 3.18
820 1450 0.950836 CAATGAGTGGGTGCGACAAA 59.049 50.000 0.00 0.00 0.00 2.83
861 1491 2.513317 TGGATAACATGGCCTGGATGAA 59.487 45.455 3.32 0.00 0.00 2.57
862 1492 3.140707 TGGATAACATGGCCTGGATGAAT 59.859 43.478 3.32 0.00 0.00 2.57
863 1493 3.508793 GGATAACATGGCCTGGATGAATG 59.491 47.826 3.32 0.00 0.00 2.67
956 1590 3.636231 CCGTTGAGGCAGTGGGGA 61.636 66.667 0.00 0.00 0.00 4.81
1102 1750 0.671251 GGATTCTGCGGAGATCGAGT 59.329 55.000 7.71 0.00 42.43 4.18
1162 1825 3.893763 CAGAGACCGCGGCTCGAT 61.894 66.667 30.45 18.99 41.67 3.59
1163 1826 3.893763 AGAGACCGCGGCTCGATG 61.894 66.667 30.45 8.94 41.67 3.84
1189 1858 0.391661 CTGGTGCCATGCTTCTACGT 60.392 55.000 0.00 0.00 0.00 3.57
1658 2351 9.534565 TTCTTAATCTTGTTAGAGATTCCATCG 57.465 33.333 3.60 0.00 43.44 3.84
1814 2609 1.558167 TTCTCCATTGGCGCCACCTA 61.558 55.000 32.95 16.74 40.22 3.08
1835 2630 2.189521 GTCGCAATGTCCCCCGAT 59.810 61.111 0.00 0.00 31.96 4.18
1852 2647 3.553715 CCCGATCAGTGGTATGACATGAG 60.554 52.174 0.00 0.00 30.46 2.90
2413 3208 0.911525 ATCTGGACCCCACTGGACAG 60.912 60.000 0.00 0.00 41.14 3.51
2592 3387 6.126863 TCCAGGTACTTGACATTTTCATCT 57.873 37.500 6.55 0.00 34.60 2.90
2649 3484 8.406297 GTTGATTAACCTCCATTAGTTGATTCC 58.594 37.037 0.00 0.00 0.00 3.01
2652 3487 9.190317 GATTAACCTCCATTAGTTGATTCCTTT 57.810 33.333 0.00 0.00 0.00 3.11
2654 3489 7.855784 AACCTCCATTAGTTGATTCCTTTTT 57.144 32.000 0.00 0.00 0.00 1.94
2672 3507 2.421220 TTTTTCGAAAAGGGGCGCT 58.579 47.368 21.53 0.00 0.00 5.92
2673 3508 0.747852 TTTTTCGAAAAGGGGCGCTT 59.252 45.000 21.53 11.46 0.00 4.68
2674 3509 0.747852 TTTTCGAAAAGGGGCGCTTT 59.252 45.000 22.23 22.23 0.00 3.51
2675 3510 1.606903 TTTCGAAAAGGGGCGCTTTA 58.393 45.000 26.94 11.41 0.00 1.85
2676 3511 1.828979 TTCGAAAAGGGGCGCTTTAT 58.171 45.000 26.94 17.61 0.00 1.40
2677 3512 1.828979 TCGAAAAGGGGCGCTTTATT 58.171 45.000 26.94 14.56 0.00 1.40
2678 3513 2.988570 TCGAAAAGGGGCGCTTTATTA 58.011 42.857 26.94 13.79 0.00 0.98
2679 3514 2.679336 TCGAAAAGGGGCGCTTTATTAC 59.321 45.455 26.94 17.42 0.00 1.89
2680 3515 2.681344 CGAAAAGGGGCGCTTTATTACT 59.319 45.455 26.94 13.15 0.00 2.24
2681 3516 3.128068 CGAAAAGGGGCGCTTTATTACTT 59.872 43.478 26.94 12.46 0.00 2.24
2682 3517 4.333372 CGAAAAGGGGCGCTTTATTACTTA 59.667 41.667 26.94 0.00 0.00 2.24
2683 3518 5.163733 CGAAAAGGGGCGCTTTATTACTTAA 60.164 40.000 26.94 0.00 0.00 1.85
2684 3519 6.593268 AAAAGGGGCGCTTTATTACTTAAA 57.407 33.333 26.94 0.00 0.00 1.52
2685 3520 6.593268 AAAGGGGCGCTTTATTACTTAAAA 57.407 33.333 25.79 0.00 29.52 1.52
2686 3521 5.830000 AGGGGCGCTTTATTACTTAAAAG 57.170 39.130 7.64 0.00 36.09 2.27
2687 3522 4.643334 AGGGGCGCTTTATTACTTAAAAGG 59.357 41.667 7.64 0.00 34.07 3.11
2688 3523 4.400251 GGGGCGCTTTATTACTTAAAAGGT 59.600 41.667 7.64 0.00 34.07 3.50
2689 3524 5.105635 GGGGCGCTTTATTACTTAAAAGGTT 60.106 40.000 7.64 0.00 34.07 3.50
2690 3525 6.392354 GGGCGCTTTATTACTTAAAAGGTTT 58.608 36.000 7.64 0.00 34.07 3.27
2691 3526 7.362834 GGGGCGCTTTATTACTTAAAAGGTTTA 60.363 37.037 7.64 0.00 34.07 2.01
2692 3527 8.028354 GGGCGCTTTATTACTTAAAAGGTTTAA 58.972 33.333 7.64 0.00 34.07 1.52
2693 3528 9.069078 GGCGCTTTATTACTTAAAAGGTTTAAG 57.931 33.333 7.64 15.59 37.84 1.85
2694 3529 9.616634 GCGCTTTATTACTTAAAAGGTTTAAGT 57.383 29.630 22.74 22.74 44.59 2.24
2702 3537 7.263100 ACTTAAAAGGTTTAAGTAACACCCG 57.737 36.000 19.54 0.00 41.77 5.28
2703 3538 6.262944 ACTTAAAAGGTTTAAGTAACACCCGG 59.737 38.462 19.54 0.00 41.77 5.73
2704 3539 2.189594 AGGTTTAAGTAACACCCGGC 57.810 50.000 0.00 0.00 38.55 6.13
2705 3540 1.167851 GGTTTAAGTAACACCCGGCC 58.832 55.000 0.00 0.00 38.55 6.13
2706 3541 1.271543 GGTTTAAGTAACACCCGGCCT 60.272 52.381 0.00 0.00 38.55 5.19
2707 3542 2.079158 GTTTAAGTAACACCCGGCCTC 58.921 52.381 0.00 0.00 36.71 4.70
2708 3543 1.648116 TTAAGTAACACCCGGCCTCT 58.352 50.000 0.00 0.00 0.00 3.69
2709 3544 0.899720 TAAGTAACACCCGGCCTCTG 59.100 55.000 0.00 0.00 0.00 3.35
2710 3545 2.436115 GTAACACCCGGCCTCTGC 60.436 66.667 0.00 0.00 0.00 4.26
2711 3546 2.925706 TAACACCCGGCCTCTGCA 60.926 61.111 0.00 0.00 40.13 4.41
2712 3547 2.297895 TAACACCCGGCCTCTGCAT 61.298 57.895 0.00 0.00 40.13 3.96
2713 3548 0.978667 TAACACCCGGCCTCTGCATA 60.979 55.000 0.00 0.00 40.13 3.14
2714 3549 1.847798 AACACCCGGCCTCTGCATAA 61.848 55.000 0.00 0.00 40.13 1.90
2715 3550 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
2716 3551 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
2717 3552 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
2718 3553 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.000 0.00 0.00 40.13 2.24
2719 3554 1.541233 CCCGGCCTCTGCATAACTAAG 60.541 57.143 0.00 0.00 40.13 2.18
2720 3555 1.412710 CCGGCCTCTGCATAACTAAGA 59.587 52.381 0.00 0.00 40.13 2.10
2721 3556 2.037772 CCGGCCTCTGCATAACTAAGAT 59.962 50.000 0.00 0.00 40.13 2.40
2722 3557 3.062763 CGGCCTCTGCATAACTAAGATG 58.937 50.000 0.00 0.00 40.13 2.90
2731 3566 4.542662 CATAACTAAGATGCACACAGCC 57.457 45.455 0.00 0.00 44.83 4.85
2732 3567 2.566833 AACTAAGATGCACACAGCCA 57.433 45.000 0.00 0.00 44.83 4.75
2733 3568 2.566833 ACTAAGATGCACACAGCCAA 57.433 45.000 0.00 0.00 44.83 4.52
2734 3569 2.154462 ACTAAGATGCACACAGCCAAC 58.846 47.619 0.00 0.00 44.83 3.77
2735 3570 2.153645 CTAAGATGCACACAGCCAACA 58.846 47.619 0.00 0.00 44.83 3.33
2736 3571 0.956633 AAGATGCACACAGCCAACAG 59.043 50.000 0.00 0.00 44.83 3.16
2737 3572 0.109153 AGATGCACACAGCCAACAGA 59.891 50.000 0.00 0.00 44.83 3.41
2738 3573 0.520404 GATGCACACAGCCAACAGAG 59.480 55.000 0.00 0.00 44.83 3.35
2739 3574 0.179009 ATGCACACAGCCAACAGAGT 60.179 50.000 0.00 0.00 44.83 3.24
2740 3575 0.394216 TGCACACAGCCAACAGAGTT 60.394 50.000 0.00 0.00 44.83 3.01
2741 3576 0.308993 GCACACAGCCAACAGAGTTC 59.691 55.000 0.00 0.00 37.23 3.01
2742 3577 1.959042 CACACAGCCAACAGAGTTCT 58.041 50.000 0.00 0.00 0.00 3.01
2743 3578 1.869767 CACACAGCCAACAGAGTTCTC 59.130 52.381 0.00 0.00 0.00 2.87
2744 3579 1.486310 ACACAGCCAACAGAGTTCTCA 59.514 47.619 2.64 0.00 0.00 3.27
2745 3580 2.105477 ACACAGCCAACAGAGTTCTCAT 59.895 45.455 2.64 0.00 0.00 2.90
2746 3581 2.483106 CACAGCCAACAGAGTTCTCATG 59.517 50.000 2.64 0.00 0.00 3.07
2747 3582 2.369860 ACAGCCAACAGAGTTCTCATGA 59.630 45.455 0.00 0.00 0.00 3.07
2748 3583 2.740981 CAGCCAACAGAGTTCTCATGAC 59.259 50.000 0.00 0.00 0.00 3.06
2749 3584 2.369860 AGCCAACAGAGTTCTCATGACA 59.630 45.455 0.00 0.00 0.00 3.58
2750 3585 3.141398 GCCAACAGAGTTCTCATGACAA 58.859 45.455 0.00 0.00 0.00 3.18
2751 3586 3.188048 GCCAACAGAGTTCTCATGACAAG 59.812 47.826 0.00 0.00 0.00 3.16
2752 3587 3.188048 CCAACAGAGTTCTCATGACAAGC 59.812 47.826 0.00 0.00 0.00 4.01
2753 3588 2.681706 ACAGAGTTCTCATGACAAGCG 58.318 47.619 0.00 0.00 0.00 4.68
2754 3589 2.297315 ACAGAGTTCTCATGACAAGCGA 59.703 45.455 0.00 0.00 0.00 4.93
2755 3590 3.243873 ACAGAGTTCTCATGACAAGCGAA 60.244 43.478 0.00 0.00 0.00 4.70
2756 3591 3.742882 CAGAGTTCTCATGACAAGCGAAA 59.257 43.478 0.00 0.00 0.00 3.46
2757 3592 4.212004 CAGAGTTCTCATGACAAGCGAAAA 59.788 41.667 0.00 0.00 0.00 2.29
2758 3593 4.816385 AGAGTTCTCATGACAAGCGAAAAA 59.184 37.500 0.00 0.00 0.00 1.94
2759 3594 5.471456 AGAGTTCTCATGACAAGCGAAAAAT 59.529 36.000 0.00 0.00 0.00 1.82
2760 3595 6.650807 AGAGTTCTCATGACAAGCGAAAAATA 59.349 34.615 0.00 0.00 0.00 1.40
2761 3596 7.173218 AGAGTTCTCATGACAAGCGAAAAATAA 59.827 33.333 0.00 0.00 0.00 1.40
2762 3597 7.648142 AGTTCTCATGACAAGCGAAAAATAAA 58.352 30.769 0.00 0.00 0.00 1.40
2763 3598 8.299570 AGTTCTCATGACAAGCGAAAAATAAAT 58.700 29.630 0.00 0.00 0.00 1.40
2764 3599 9.554724 GTTCTCATGACAAGCGAAAAATAAATA 57.445 29.630 0.00 0.00 0.00 1.40
2788 3623 6.399639 AAAAAGGAAGGCGAAATACAAAGA 57.600 33.333 0.00 0.00 0.00 2.52
2819 3657 7.708322 TGTTGCTTTGTGAATTTAGTTTGCATA 59.292 29.630 0.00 0.00 0.00 3.14
3090 5808 3.457610 AATCTGTTGCCAGTTTGTTGG 57.542 42.857 0.00 0.00 39.82 3.77
3093 5834 3.561143 TCTGTTGCCAGTTTGTTGGTAT 58.439 40.909 0.00 0.00 40.49 2.73
3211 6199 3.118775 TCATGTGGTAGCATGTGGTCTAC 60.119 47.826 0.00 0.00 44.68 2.59
3222 6210 0.955919 GTGGTCTACTGGCAGGCAAC 60.956 60.000 20.34 12.56 0.00 4.17
3250 6238 6.640518 TGGCAATTTGGTACTAACAACAAAA 58.359 32.000 0.00 0.00 36.53 2.44
3299 6289 5.393866 ACCAACCAAACTGGATTAGACAAT 58.606 37.500 0.00 0.00 40.96 2.71
3303 6293 6.575162 ACCAAACTGGATTAGACAATGAAC 57.425 37.500 0.00 0.00 40.96 3.18
3374 6365 5.703978 CTCAGAGGTGAGTGATACATAGG 57.296 47.826 0.00 0.00 44.72 2.57
3378 6369 6.266330 TCAGAGGTGAGTGATACATAGGATTG 59.734 42.308 0.00 0.00 0.00 2.67
3522 6528 2.303022 CAAGACAGGAAGCAACCTCCTA 59.697 50.000 0.00 0.00 38.32 2.94
3669 6675 3.385749 ATTCCGCATCGACCCGCTT 62.386 57.895 0.00 0.00 0.00 4.68
3678 6684 2.434185 GACCCGCTTGACATCGCA 60.434 61.111 0.00 0.00 0.00 5.10
3762 6768 1.993391 CCTTGGACCCTTCGGCCTA 60.993 63.158 0.00 0.00 0.00 3.93
3768 6774 0.108281 GACCCTTCGGCCTACTTGTC 60.108 60.000 0.00 0.00 0.00 3.18
3906 6912 0.168788 CTCGCGCCAATGACATTGTT 59.831 50.000 23.27 0.00 38.59 2.83
3918 6924 3.921677 TGACATTGTTAAGAGGGTCGTC 58.078 45.455 0.00 0.00 0.00 4.20
3927 6933 3.509137 GAGGGTCGTCGGCAACACA 62.509 63.158 0.00 0.00 0.00 3.72
4005 7011 0.107993 TGGAGAGCTTTGCGATGGAG 60.108 55.000 0.00 0.00 0.00 3.86
4175 7181 6.218019 CCTACATGGCATCAATGTAAAATGG 58.782 40.000 0.00 0.00 31.35 3.16
4245 7256 2.843113 CTGATTTTCTCCTCACTCCCCT 59.157 50.000 0.00 0.00 0.00 4.79
4261 7272 4.471747 ACTCCCCTCTATCTTCTGTTTTCC 59.528 45.833 0.00 0.00 0.00 3.13
4305 7319 3.719871 TCATTGTCTAGGCCTTCCAGTA 58.280 45.455 12.58 0.00 33.74 2.74
4315 7329 3.651423 AGGCCTTCCAGTAAGTTGTAGTT 59.349 43.478 0.00 0.00 32.89 2.24
4386 7400 8.519526 TGTACCACATCAGTCAAATTAATTTCC 58.480 33.333 10.53 4.96 0.00 3.13
4392 7406 8.859090 ACATCAGTCAAATTAATTTCCACAGAA 58.141 29.630 10.53 2.10 0.00 3.02
4393 7407 9.865321 CATCAGTCAAATTAATTTCCACAGAAT 57.135 29.630 10.53 1.94 0.00 2.40
4440 7454 2.514803 GGCTGGTTGGTTCATACTGTT 58.485 47.619 0.00 0.00 0.00 3.16
4463 7477 3.321968 TCACAGGCTATCTACGATTGCAT 59.678 43.478 11.23 2.79 0.00 3.96
4487 7504 3.249091 CAGTGTCTCTGTATGCTCACAC 58.751 50.000 0.00 0.00 39.17 3.82
4515 7532 7.621832 TGAAACTGAATTTAAATCAAGTGCG 57.378 32.000 13.57 0.00 0.00 5.34
4521 7538 7.099266 TGAATTTAAATCAAGTGCGGATGAT 57.901 32.000 0.10 0.00 37.88 2.45
4524 7541 5.484173 TTAAATCAAGTGCGGATGATCAC 57.516 39.130 0.00 0.00 35.29 3.06
4527 7544 1.550072 TCAAGTGCGGATGATCACAGA 59.450 47.619 0.00 0.00 35.76 3.41
4531 7548 0.612744 TGCGGATGATCACAGAACCA 59.387 50.000 0.00 0.00 0.00 3.67
4539 7556 6.057533 GGATGATCACAGAACCATGATGTTA 58.942 40.000 0.00 0.00 35.67 2.41
4543 7560 7.592938 TGATCACAGAACCATGATGTTAAAAC 58.407 34.615 0.00 0.00 35.67 2.43
4559 7576 6.096695 TGTTAAAACTTGAAAGTGGCTGTTC 58.903 36.000 0.00 0.00 39.66 3.18
4573 7590 4.929211 GTGGCTGTTCAGTTTGAAAAAGTT 59.071 37.500 1.78 0.00 38.22 2.66
4619 7638 8.475359 GTCGTTTTATCCTAAGACTAATTACGC 58.525 37.037 0.00 0.00 0.00 4.42
4628 7647 6.696148 CCTAAGACTAATTACGCAACCTAGTG 59.304 42.308 0.00 0.00 0.00 2.74
4631 7650 6.558909 AGACTAATTACGCAACCTAGTGTAC 58.441 40.000 0.00 0.00 34.50 2.90
4644 7663 6.278172 ACCTAGTGTACTGCCTTACTTAAC 57.722 41.667 0.00 0.00 0.00 2.01
4646 7665 4.548451 AGTGTACTGCCTTACTTAACCC 57.452 45.455 0.00 0.00 0.00 4.11
4798 7827 3.717294 ATCCGACCACACCCTGCC 61.717 66.667 0.00 0.00 0.00 4.85
4806 7835 0.036010 CCACACCCTGCCTACTTCAG 60.036 60.000 0.00 0.00 0.00 3.02
4825 7854 2.680841 CAGACCGTGTTTCTGTTCCAAA 59.319 45.455 0.00 0.00 36.50 3.28
4917 7946 5.907197 TCAAGAGATTTTGACGAGACAAC 57.093 39.130 0.00 0.00 32.39 3.32
4952 7981 7.482743 CACAACAACAGTCAAATGCTATCATAC 59.517 37.037 0.00 0.00 31.46 2.39
4959 7988 8.192774 ACAGTCAAATGCTATCATACATTTTGG 58.807 33.333 0.00 0.00 42.34 3.28
4960 7989 8.407832 CAGTCAAATGCTATCATACATTTTGGA 58.592 33.333 0.00 0.00 42.34 3.53
4962 7991 8.408601 GTCAAATGCTATCATACATTTTGGACT 58.591 33.333 0.00 0.00 42.34 3.85
4963 7992 8.623903 TCAAATGCTATCATACATTTTGGACTC 58.376 33.333 0.00 0.00 42.34 3.36
4964 7993 8.407832 CAAATGCTATCATACATTTTGGACTCA 58.592 33.333 0.00 0.00 42.34 3.41
4965 7994 8.701908 AATGCTATCATACATTTTGGACTCAT 57.298 30.769 0.00 0.00 32.67 2.90
4966 7995 9.797642 AATGCTATCATACATTTTGGACTCATA 57.202 29.630 0.00 0.00 32.67 2.15
4967 7996 8.607441 TGCTATCATACATTTTGGACTCATAC 57.393 34.615 0.00 0.00 0.00 2.39
4968 7997 8.432013 TGCTATCATACATTTTGGACTCATACT 58.568 33.333 0.00 0.00 0.00 2.12
4969 7998 8.930760 GCTATCATACATTTTGGACTCATACTC 58.069 37.037 0.00 0.00 0.00 2.59
4972 8001 7.500992 TCATACATTTTGGACTCATACTCTCC 58.499 38.462 0.00 0.00 0.00 3.71
4973 8002 4.759782 ACATTTTGGACTCATACTCTCCG 58.240 43.478 0.00 0.00 0.00 4.63
4974 8003 4.223032 ACATTTTGGACTCATACTCTCCGT 59.777 41.667 0.00 0.00 0.00 4.69
4975 8004 4.884668 TTTTGGACTCATACTCTCCGTT 57.115 40.909 0.00 0.00 0.00 4.44
4976 8005 5.988310 TTTTGGACTCATACTCTCCGTTA 57.012 39.130 0.00 0.00 0.00 3.18
4977 8006 4.978083 TTGGACTCATACTCTCCGTTAC 57.022 45.455 0.00 0.00 0.00 2.50
4978 8007 4.232188 TGGACTCATACTCTCCGTTACT 57.768 45.455 0.00 0.00 0.00 2.24
4979 8008 5.363562 TGGACTCATACTCTCCGTTACTA 57.636 43.478 0.00 0.00 0.00 1.82
4980 8009 5.748402 TGGACTCATACTCTCCGTTACTAA 58.252 41.667 0.00 0.00 0.00 2.24
4981 8010 6.182627 TGGACTCATACTCTCCGTTACTAAA 58.817 40.000 0.00 0.00 0.00 1.85
4982 8011 6.832384 TGGACTCATACTCTCCGTTACTAAAT 59.168 38.462 0.00 0.00 0.00 1.40
4983 8012 7.994911 TGGACTCATACTCTCCGTTACTAAATA 59.005 37.037 0.00 0.00 0.00 1.40
4984 8013 9.012161 GGACTCATACTCTCCGTTACTAAATAT 57.988 37.037 0.00 0.00 0.00 1.28
4992 8021 9.939802 ACTCTCCGTTACTAAATATTTGTCTTT 57.060 29.630 11.05 0.00 0.00 2.52
5010 8039 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5021 8050 9.355215 AGAGATTTCAACAAGTAACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
5022 8051 9.350357 GAGATTTCAACAAGTAACTACATACGA 57.650 33.333 0.00 0.00 0.00 3.43
5023 8052 9.701098 AGATTTCAACAAGTAACTACATACGAA 57.299 29.630 0.00 0.00 0.00 3.85
5024 8053 9.953825 GATTTCAACAAGTAACTACATACGAAG 57.046 33.333 0.00 0.00 0.00 3.79
5025 8054 6.939551 TCAACAAGTAACTACATACGAAGC 57.060 37.500 0.00 0.00 0.00 3.86
5026 8055 6.448852 TCAACAAGTAACTACATACGAAGCA 58.551 36.000 0.00 0.00 0.00 3.91
5027 8056 6.924612 TCAACAAGTAACTACATACGAAGCAA 59.075 34.615 0.00 0.00 0.00 3.91
5028 8057 7.438757 TCAACAAGTAACTACATACGAAGCAAA 59.561 33.333 0.00 0.00 0.00 3.68
5029 8058 7.718272 ACAAGTAACTACATACGAAGCAAAA 57.282 32.000 0.00 0.00 0.00 2.44
5030 8059 8.319143 ACAAGTAACTACATACGAAGCAAAAT 57.681 30.769 0.00 0.00 0.00 1.82
5031 8060 8.227791 ACAAGTAACTACATACGAAGCAAAATG 58.772 33.333 0.00 0.00 0.00 2.32
5032 8061 8.440059 CAAGTAACTACATACGAAGCAAAATGA 58.560 33.333 0.00 0.00 0.00 2.57
5033 8062 8.542497 AGTAACTACATACGAAGCAAAATGAA 57.458 30.769 0.00 0.00 0.00 2.57
5034 8063 9.162764 AGTAACTACATACGAAGCAAAATGAAT 57.837 29.630 0.00 0.00 0.00 2.57
5035 8064 9.210426 GTAACTACATACGAAGCAAAATGAATG 57.790 33.333 0.00 0.00 0.00 2.67
5036 8065 7.609760 ACTACATACGAAGCAAAATGAATGA 57.390 32.000 0.00 0.00 0.00 2.57
5037 8066 8.039603 ACTACATACGAAGCAAAATGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
5038 8067 8.677300 ACTACATACGAAGCAAAATGAATGAAT 58.323 29.630 0.00 0.00 0.00 2.57
5039 8068 9.507280 CTACATACGAAGCAAAATGAATGAATT 57.493 29.630 0.00 0.00 0.00 2.17
5040 8069 8.761575 ACATACGAAGCAAAATGAATGAATTT 57.238 26.923 0.00 0.00 0.00 1.82
5041 8070 9.853555 ACATACGAAGCAAAATGAATGAATTTA 57.146 25.926 0.00 0.00 0.00 1.40
5043 8072 9.853555 ATACGAAGCAAAATGAATGAATTTACA 57.146 25.926 0.00 0.00 0.00 2.41
5044 8073 8.006741 ACGAAGCAAAATGAATGAATTTACAC 57.993 30.769 0.00 0.00 0.00 2.90
5045 8074 7.867403 ACGAAGCAAAATGAATGAATTTACACT 59.133 29.630 0.00 0.00 0.00 3.55
5046 8075 8.368126 CGAAGCAAAATGAATGAATTTACACTC 58.632 33.333 0.00 0.00 0.00 3.51
5047 8076 9.415544 GAAGCAAAATGAATGAATTTACACTCT 57.584 29.630 0.00 0.00 0.00 3.24
5088 8117 8.306313 ACATCTGTATGTAGTAGTCCATTTGA 57.694 34.615 0.00 0.00 44.66 2.69
5089 8118 8.758829 ACATCTGTATGTAGTAGTCCATTTGAA 58.241 33.333 0.00 0.00 44.66 2.69
5090 8119 9.599866 CATCTGTATGTAGTAGTCCATTTGAAA 57.400 33.333 0.00 0.00 0.00 2.69
5092 8121 9.817809 TCTGTATGTAGTAGTCCATTTGAAATC 57.182 33.333 0.00 0.00 0.00 2.17
5093 8122 9.823647 CTGTATGTAGTAGTCCATTTGAAATCT 57.176 33.333 0.00 0.00 0.00 2.40
5094 8123 9.817809 TGTATGTAGTAGTCCATTTGAAATCTC 57.182 33.333 0.00 0.00 0.00 2.75
5104 8133 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
5105 8134 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
5123 8152 9.908152 AAAAGACAAATATTTAGAAACGAAGGG 57.092 29.630 0.00 0.00 0.00 3.95
5124 8153 8.857694 AAGACAAATATTTAGAAACGAAGGGA 57.142 30.769 0.00 0.00 0.00 4.20
5125 8154 8.494016 AGACAAATATTTAGAAACGAAGGGAG 57.506 34.615 0.00 0.00 0.00 4.30
5267 8296 2.386661 AAGCCACTCATGTAGAACGG 57.613 50.000 0.00 0.00 0.00 4.44
5286 8315 7.450074 AGAACGGCAATCCTTGTTATGATATA 58.550 34.615 0.00 0.00 0.00 0.86
5287 8316 7.604164 AGAACGGCAATCCTTGTTATGATATAG 59.396 37.037 0.00 0.00 0.00 1.31
5288 8317 7.004555 ACGGCAATCCTTGTTATGATATAGA 57.995 36.000 0.00 0.00 0.00 1.98
5289 8318 7.099764 ACGGCAATCCTTGTTATGATATAGAG 58.900 38.462 0.00 0.00 0.00 2.43
5290 8319 7.099764 CGGCAATCCTTGTTATGATATAGAGT 58.900 38.462 0.00 0.00 0.00 3.24
5291 8320 8.251026 CGGCAATCCTTGTTATGATATAGAGTA 58.749 37.037 0.00 0.00 0.00 2.59
5292 8321 9.372369 GGCAATCCTTGTTATGATATAGAGTAC 57.628 37.037 0.00 0.00 0.00 2.73
5318 8347 4.512484 TCTCAATCGACAAATATGCACCA 58.488 39.130 0.00 0.00 0.00 4.17
5349 8378 6.065976 ACATGACCCAGAATTGAATGTCTA 57.934 37.500 0.00 0.00 0.00 2.59
5355 8384 6.666678 ACCCAGAATTGAATGTCTATGTGAT 58.333 36.000 0.00 0.00 0.00 3.06
5377 8408 4.447290 TCAATATCACACAACCATACCGG 58.553 43.478 0.00 0.00 42.50 5.28
5380 8411 0.326595 TCACACAACCATACCGGCAT 59.673 50.000 0.00 0.00 39.03 4.40
5381 8412 1.173043 CACACAACCATACCGGCATT 58.827 50.000 0.00 0.00 39.03 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.891168 GTCTTCAAACCTTTTGGGGACTAA 59.109 41.667 12.91 0.00 46.08 2.24
1 2 4.079672 TGTCTTCAAACCTTTTGGGGACTA 60.080 41.667 17.23 8.27 46.08 2.59
2 3 3.296854 GTCTTCAAACCTTTTGGGGACT 58.703 45.455 12.91 0.00 46.08 3.85
3 4 3.028130 TGTCTTCAAACCTTTTGGGGAC 58.972 45.455 13.12 13.12 46.08 4.46
5 6 2.763448 TGTGTCTTCAAACCTTTTGGGG 59.237 45.455 0.00 0.00 46.08 4.96
18 19 8.330302 CAATCAATTCTTTTGGTTTGTGTCTTC 58.670 33.333 0.00 0.00 0.00 2.87
43 44 1.612199 GGATTAAAGTGGTGGCCGACA 60.612 52.381 0.00 0.00 0.00 4.35
74 75 4.479993 CCAAGGCTGCCTCTCCGG 62.480 72.222 23.61 15.94 30.89 5.14
75 76 3.672295 GACCAAGGCTGCCTCTCCG 62.672 68.421 23.61 11.78 30.89 4.63
99 100 4.692930 GCCCAATTGCCATCCTCT 57.307 55.556 0.00 0.00 0.00 3.69
109 110 2.537633 AGATGTGTCATGGCCCAATT 57.462 45.000 0.00 0.00 0.00 2.32
129 130 1.377202 GGAGCGTGCATGGAGGAAA 60.377 57.895 11.38 0.00 0.00 3.13
184 185 0.968901 CCGTAGTGTCTGGTGCCCTA 60.969 60.000 0.00 0.00 0.00 3.53
188 189 1.446272 GAGCCGTAGTGTCTGGTGC 60.446 63.158 0.00 0.00 0.00 5.01
212 213 5.464057 TCATTTCGTCTAACACATGTCGTTT 59.536 36.000 15.58 4.55 0.00 3.60
217 218 9.825972 CTATTTTTCATTTCGTCTAACACATGT 57.174 29.630 0.00 0.00 0.00 3.21
302 303 7.509141 TCACAACTCTTTCTGCAATGAAATA 57.491 32.000 1.97 0.00 35.68 1.40
355 361 2.165641 GTCCGGAAACCATCCCAAAATC 59.834 50.000 5.23 0.00 46.39 2.17
368 374 3.057969 TCGTAGTAGACAGTCCGGAAA 57.942 47.619 5.23 0.00 0.00 3.13
373 379 4.458642 AGACCTTTTCGTAGTAGACAGTCC 59.541 45.833 0.00 0.00 0.00 3.85
400 406 1.609501 CCTCTCCCTCACCGGAACA 60.610 63.158 9.46 0.00 33.16 3.18
439 445 8.340618 ACGACTACAAGTACTAAATCAAGGTA 57.659 34.615 0.00 0.00 0.00 3.08
575 700 5.891451 AGCTGTCAAGAAAAAGTTACCAAC 58.109 37.500 0.00 0.00 0.00 3.77
578 703 6.262496 ACCTAAGCTGTCAAGAAAAAGTTACC 59.738 38.462 0.00 0.00 0.00 2.85
585 710 5.299279 CCAAGAACCTAAGCTGTCAAGAAAA 59.701 40.000 0.00 0.00 0.00 2.29
586 711 4.821805 CCAAGAACCTAAGCTGTCAAGAAA 59.178 41.667 0.00 0.00 0.00 2.52
589 714 3.744660 ACCAAGAACCTAAGCTGTCAAG 58.255 45.455 0.00 0.00 0.00 3.02
718 1334 3.713248 TCAGATCCTTCCATGCATGTACT 59.287 43.478 24.58 9.97 0.00 2.73
719 1335 4.077300 TCAGATCCTTCCATGCATGTAC 57.923 45.455 24.58 8.07 0.00 2.90
781 1403 8.964476 TCATTGTTCTCTTCAGAAACTTAACT 57.036 30.769 0.00 0.00 40.49 2.24
783 1405 8.830580 CACTCATTGTTCTCTTCAGAAACTTAA 58.169 33.333 0.00 0.00 40.49 1.85
785 1407 6.261826 CCACTCATTGTTCTCTTCAGAAACTT 59.738 38.462 0.00 0.00 40.49 2.66
789 1411 4.103153 ACCCACTCATTGTTCTCTTCAGAA 59.897 41.667 0.00 0.00 36.19 3.02
791 1413 3.750130 CACCCACTCATTGTTCTCTTCAG 59.250 47.826 0.00 0.00 0.00 3.02
792 1414 3.743521 CACCCACTCATTGTTCTCTTCA 58.256 45.455 0.00 0.00 0.00 3.02
793 1415 2.485814 GCACCCACTCATTGTTCTCTTC 59.514 50.000 0.00 0.00 0.00 2.87
794 1416 2.508526 GCACCCACTCATTGTTCTCTT 58.491 47.619 0.00 0.00 0.00 2.85
805 1427 2.617274 GCCTTTGTCGCACCCACTC 61.617 63.158 0.00 0.00 0.00 3.51
810 1440 0.096454 GATTACGCCTTTGTCGCACC 59.904 55.000 0.00 0.00 0.00 5.01
819 1449 3.990469 CAGCTCGATTATGATTACGCCTT 59.010 43.478 0.00 0.00 0.00 4.35
820 1450 3.579709 CAGCTCGATTATGATTACGCCT 58.420 45.455 0.00 0.00 0.00 5.52
861 1491 5.300411 TGTCAGTGCTAATCATCATCCAT 57.700 39.130 0.00 0.00 0.00 3.41
862 1492 4.758773 TGTCAGTGCTAATCATCATCCA 57.241 40.909 0.00 0.00 0.00 3.41
863 1493 5.180868 GGATTGTCAGTGCTAATCATCATCC 59.819 44.000 16.14 0.00 33.57 3.51
956 1590 1.202770 GGGTGCCATTTATAGTCGCCT 60.203 52.381 0.00 0.00 0.00 5.52
1102 1750 0.034380 ACGGAGGAGACGAAGGATGA 60.034 55.000 0.00 0.00 34.93 2.92
1167 1830 4.487412 GAAGCATGGCACCAGCGC 62.487 66.667 0.00 0.00 43.41 5.92
1168 1831 1.450134 TAGAAGCATGGCACCAGCG 60.450 57.895 0.00 0.00 43.41 5.18
1169 1832 1.709147 CGTAGAAGCATGGCACCAGC 61.709 60.000 0.00 0.00 41.10 4.85
1170 1833 0.391661 ACGTAGAAGCATGGCACCAG 60.392 55.000 0.00 0.00 0.00 4.00
1171 1834 0.673333 CACGTAGAAGCATGGCACCA 60.673 55.000 0.00 0.00 0.00 4.17
1172 1835 1.982073 GCACGTAGAAGCATGGCACC 61.982 60.000 0.00 0.00 33.01 5.01
1658 2351 9.533253 TTTGAATTCTCAAAGAAATGAGTTTCC 57.467 29.630 7.05 3.41 44.76 3.13
1814 2609 4.404098 GGGGACATTGCGACGGGT 62.404 66.667 0.00 0.00 0.00 5.28
1835 2630 1.136891 CCGCTCATGTCATACCACTGA 59.863 52.381 0.00 0.00 0.00 3.41
2034 2829 1.043673 CGGAAGTCCTTCTCCCCGAT 61.044 60.000 6.97 0.00 41.47 4.18
2288 3083 2.857889 CCCCCATTTGTGGACCCA 59.142 61.111 0.00 0.00 0.00 4.51
2290 3085 3.068064 CGCCCCCATTTGTGGACC 61.068 66.667 0.00 0.00 0.00 4.46
2654 3489 0.747852 AAGCGCCCCTTTTCGAAAAA 59.252 45.000 22.67 8.37 0.00 1.94
2655 3490 0.747852 AAAGCGCCCCTTTTCGAAAA 59.252 45.000 21.35 21.35 40.85 2.29
2656 3491 1.606903 TAAAGCGCCCCTTTTCGAAA 58.393 45.000 6.47 6.47 40.85 3.46
2657 3492 1.828979 ATAAAGCGCCCCTTTTCGAA 58.171 45.000 2.29 0.00 40.85 3.71
2658 3493 1.828979 AATAAAGCGCCCCTTTTCGA 58.171 45.000 2.29 0.00 40.85 3.71
2659 3494 2.681344 AGTAATAAAGCGCCCCTTTTCG 59.319 45.455 2.29 0.00 40.85 3.46
2660 3495 4.713824 AAGTAATAAAGCGCCCCTTTTC 57.286 40.909 2.29 0.00 40.85 2.29
2661 3496 6.593268 TTTAAGTAATAAAGCGCCCCTTTT 57.407 33.333 2.29 0.00 40.85 2.27
2662 3497 6.350696 CCTTTTAAGTAATAAAGCGCCCCTTT 60.351 38.462 2.29 0.06 45.44 3.11
2663 3498 5.126545 CCTTTTAAGTAATAAAGCGCCCCTT 59.873 40.000 2.29 0.00 35.03 3.95
2664 3499 4.643334 CCTTTTAAGTAATAAAGCGCCCCT 59.357 41.667 2.29 0.00 35.03 4.79
2665 3500 4.400251 ACCTTTTAAGTAATAAAGCGCCCC 59.600 41.667 2.29 0.00 35.03 5.80
2666 3501 5.571784 ACCTTTTAAGTAATAAAGCGCCC 57.428 39.130 2.29 0.00 35.03 6.13
2667 3502 8.969121 TTAAACCTTTTAAGTAATAAAGCGCC 57.031 30.769 2.29 0.00 35.03 6.53
2668 3503 9.616634 ACTTAAACCTTTTAAGTAATAAAGCGC 57.383 29.630 18.22 0.00 41.77 5.92
2676 3511 8.835439 CGGGTGTTACTTAAACCTTTTAAGTAA 58.165 33.333 25.95 25.95 46.60 2.24
2677 3512 7.443879 CCGGGTGTTACTTAAACCTTTTAAGTA 59.556 37.037 20.07 20.07 42.96 2.24
2678 3513 6.262944 CCGGGTGTTACTTAAACCTTTTAAGT 59.737 38.462 21.61 21.61 44.59 2.24
2679 3514 6.671190 CCGGGTGTTACTTAAACCTTTTAAG 58.329 40.000 14.21 14.21 37.27 1.85
2680 3515 5.009510 GCCGGGTGTTACTTAAACCTTTTAA 59.990 40.000 2.18 0.00 37.27 1.52
2681 3516 4.518590 GCCGGGTGTTACTTAAACCTTTTA 59.481 41.667 2.18 0.00 37.27 1.52
2682 3517 3.318839 GCCGGGTGTTACTTAAACCTTTT 59.681 43.478 2.18 0.00 37.27 2.27
2683 3518 2.886523 GCCGGGTGTTACTTAAACCTTT 59.113 45.455 2.18 0.00 37.27 3.11
2684 3519 2.507484 GCCGGGTGTTACTTAAACCTT 58.493 47.619 2.18 0.00 37.27 3.50
2685 3520 1.271543 GGCCGGGTGTTACTTAAACCT 60.272 52.381 2.18 0.00 37.27 3.50
2686 3521 1.167851 GGCCGGGTGTTACTTAAACC 58.832 55.000 2.18 0.00 37.27 3.27
2687 3522 2.079158 GAGGCCGGGTGTTACTTAAAC 58.921 52.381 2.18 0.00 38.67 2.01
2688 3523 1.980036 AGAGGCCGGGTGTTACTTAAA 59.020 47.619 2.18 0.00 0.00 1.52
2689 3524 1.276989 CAGAGGCCGGGTGTTACTTAA 59.723 52.381 2.18 0.00 0.00 1.85
2690 3525 0.899720 CAGAGGCCGGGTGTTACTTA 59.100 55.000 2.18 0.00 0.00 2.24
2691 3526 1.677552 CAGAGGCCGGGTGTTACTT 59.322 57.895 2.18 0.00 0.00 2.24
2692 3527 2.955881 GCAGAGGCCGGGTGTTACT 61.956 63.158 2.18 0.00 0.00 2.24
2693 3528 2.436115 GCAGAGGCCGGGTGTTAC 60.436 66.667 2.18 0.00 0.00 2.50
2694 3529 0.978667 TATGCAGAGGCCGGGTGTTA 60.979 55.000 2.18 0.00 40.13 2.41
2695 3530 1.847798 TTATGCAGAGGCCGGGTGTT 61.848 55.000 2.18 0.00 40.13 3.32
2696 3531 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
2697 3532 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
2698 3533 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
2699 3534 0.468226 TTAGTTATGCAGAGGCCGGG 59.532 55.000 2.18 0.00 40.13 5.73
2700 3535 1.412710 TCTTAGTTATGCAGAGGCCGG 59.587 52.381 0.00 0.00 40.13 6.13
2701 3536 2.890808 TCTTAGTTATGCAGAGGCCG 57.109 50.000 0.00 0.00 40.13 6.13
2710 3545 3.940852 TGGCTGTGTGCATCTTAGTTATG 59.059 43.478 0.00 0.00 45.15 1.90
2711 3546 4.220693 TGGCTGTGTGCATCTTAGTTAT 57.779 40.909 0.00 0.00 45.15 1.89
2712 3547 3.694043 TGGCTGTGTGCATCTTAGTTA 57.306 42.857 0.00 0.00 45.15 2.24
2713 3548 2.554032 GTTGGCTGTGTGCATCTTAGTT 59.446 45.455 0.00 0.00 45.15 2.24
2714 3549 2.154462 GTTGGCTGTGTGCATCTTAGT 58.846 47.619 0.00 0.00 45.15 2.24
2715 3550 2.153645 TGTTGGCTGTGTGCATCTTAG 58.846 47.619 0.00 0.00 45.15 2.18
2716 3551 2.153645 CTGTTGGCTGTGTGCATCTTA 58.846 47.619 0.00 0.00 45.15 2.10
2717 3552 0.956633 CTGTTGGCTGTGTGCATCTT 59.043 50.000 0.00 0.00 45.15 2.40
2718 3553 0.109153 TCTGTTGGCTGTGTGCATCT 59.891 50.000 0.00 0.00 45.15 2.90
2719 3554 0.520404 CTCTGTTGGCTGTGTGCATC 59.480 55.000 0.00 0.00 45.15 3.91
2720 3555 0.179009 ACTCTGTTGGCTGTGTGCAT 60.179 50.000 0.00 0.00 45.15 3.96
2721 3556 0.394216 AACTCTGTTGGCTGTGTGCA 60.394 50.000 0.00 0.00 45.15 4.57
2722 3557 0.308993 GAACTCTGTTGGCTGTGTGC 59.691 55.000 0.00 0.00 41.94 4.57
2723 3558 1.869767 GAGAACTCTGTTGGCTGTGTG 59.130 52.381 0.00 0.00 0.00 3.82
2724 3559 1.486310 TGAGAACTCTGTTGGCTGTGT 59.514 47.619 3.51 0.00 0.00 3.72
2725 3560 2.245159 TGAGAACTCTGTTGGCTGTG 57.755 50.000 3.51 0.00 0.00 3.66
2726 3561 2.369860 TCATGAGAACTCTGTTGGCTGT 59.630 45.455 0.00 0.00 0.00 4.40
2727 3562 2.740981 GTCATGAGAACTCTGTTGGCTG 59.259 50.000 0.00 0.00 0.00 4.85
2728 3563 2.369860 TGTCATGAGAACTCTGTTGGCT 59.630 45.455 0.00 0.00 0.00 4.75
2729 3564 2.771089 TGTCATGAGAACTCTGTTGGC 58.229 47.619 0.00 1.72 0.00 4.52
2730 3565 3.188048 GCTTGTCATGAGAACTCTGTTGG 59.812 47.826 0.23 0.00 0.00 3.77
2731 3566 3.120752 CGCTTGTCATGAGAACTCTGTTG 60.121 47.826 0.23 0.00 0.00 3.33
2732 3567 3.062763 CGCTTGTCATGAGAACTCTGTT 58.937 45.455 0.23 0.00 0.00 3.16
2733 3568 2.297315 TCGCTTGTCATGAGAACTCTGT 59.703 45.455 0.23 0.00 0.00 3.41
2734 3569 2.951726 TCGCTTGTCATGAGAACTCTG 58.048 47.619 0.23 0.00 0.00 3.35
2735 3570 3.667497 TTCGCTTGTCATGAGAACTCT 57.333 42.857 0.23 0.00 0.00 3.24
2736 3571 4.732285 TTTTCGCTTGTCATGAGAACTC 57.268 40.909 0.23 0.00 0.00 3.01
2737 3572 5.695851 ATTTTTCGCTTGTCATGAGAACT 57.304 34.783 0.23 0.00 0.00 3.01
2738 3573 7.851822 TTTATTTTTCGCTTGTCATGAGAAC 57.148 32.000 0.23 0.00 0.00 3.01
2765 3600 6.399639 TCTTTGTATTTCGCCTTCCTTTTT 57.600 33.333 0.00 0.00 0.00 1.94
2766 3601 6.399639 TTCTTTGTATTTCGCCTTCCTTTT 57.600 33.333 0.00 0.00 0.00 2.27
2767 3602 6.399639 TTTCTTTGTATTTCGCCTTCCTTT 57.600 33.333 0.00 0.00 0.00 3.11
2768 3603 6.399639 TTTTCTTTGTATTTCGCCTTCCTT 57.600 33.333 0.00 0.00 0.00 3.36
2769 3604 6.399639 TTTTTCTTTGTATTTCGCCTTCCT 57.600 33.333 0.00 0.00 0.00 3.36
2770 3605 6.645003 ACATTTTTCTTTGTATTTCGCCTTCC 59.355 34.615 0.00 0.00 0.00 3.46
2771 3606 7.637709 ACATTTTTCTTTGTATTTCGCCTTC 57.362 32.000 0.00 0.00 0.00 3.46
2772 3607 7.518211 GCAACATTTTTCTTTGTATTTCGCCTT 60.518 33.333 0.00 0.00 0.00 4.35
2773 3608 6.073819 GCAACATTTTTCTTTGTATTTCGCCT 60.074 34.615 0.00 0.00 0.00 5.52
2774 3609 6.070829 GCAACATTTTTCTTTGTATTTCGCC 58.929 36.000 0.00 0.00 0.00 5.54
2775 3610 6.876804 AGCAACATTTTTCTTTGTATTTCGC 58.123 32.000 0.00 0.00 0.00 4.70
2776 3611 9.146270 CAAAGCAACATTTTTCTTTGTATTTCG 57.854 29.630 8.12 0.00 40.03 3.46
2783 3618 8.898983 AATTCACAAAGCAACATTTTTCTTTG 57.101 26.923 13.07 13.07 46.34 2.77
2786 3621 9.382275 ACTAAATTCACAAAGCAACATTTTTCT 57.618 25.926 0.00 0.00 0.00 2.52
2787 3622 9.986833 AACTAAATTCACAAAGCAACATTTTTC 57.013 25.926 0.00 0.00 0.00 2.29
2811 3649 4.217550 TGCAACCCTTCTAACTATGCAAAC 59.782 41.667 0.00 0.00 39.15 2.93
2819 3657 3.898482 AGTGTTTGCAACCCTTCTAACT 58.102 40.909 0.00 0.00 0.00 2.24
3090 5808 7.302524 TGGTTCGTGCTAAAAGAAATTGATAC 58.697 34.615 0.00 0.00 0.00 2.24
3093 5834 5.759506 TGGTTCGTGCTAAAAGAAATTGA 57.240 34.783 0.00 0.00 0.00 2.57
3211 6199 3.673484 CCAACCGTTGCCTGCCAG 61.673 66.667 5.68 0.00 0.00 4.85
3222 6210 3.253677 TGTTAGTACCAAATTGCCAACCG 59.746 43.478 0.00 0.00 0.00 4.44
3264 6253 4.337274 AGTTTGGTTGGTACTAGCACAAAC 59.663 41.667 20.71 20.71 40.13 2.93
3268 6257 2.812011 CCAGTTTGGTTGGTACTAGCAC 59.188 50.000 0.00 0.00 31.35 4.40
3299 6289 2.917933 CAGACAAGACAACCCTGTTCA 58.082 47.619 0.00 0.00 35.30 3.18
3303 6293 1.972872 AAGCAGACAAGACAACCCTG 58.027 50.000 0.00 0.00 0.00 4.45
3406 6398 9.566432 AATTATTCAGCAAAGAATCCTAGGTAG 57.434 33.333 9.08 0.00 38.97 3.18
3458 6455 2.866762 GGGATCGACTGCAAGATAACAC 59.133 50.000 0.00 0.00 37.43 3.32
3669 6675 1.672030 CTTGGTGGCTGCGATGTCA 60.672 57.895 0.00 0.00 0.00 3.58
3762 6768 2.665185 GCGTCGGCAAGGACAAGT 60.665 61.111 0.00 0.00 39.62 3.16
3906 6912 1.180456 TGTTGCCGACGACCCTCTTA 61.180 55.000 0.00 0.00 0.00 2.10
3927 6933 2.281070 CCGTTGAGCACAGGCACT 60.281 61.111 0.00 0.00 44.61 4.40
4005 7011 3.756727 GTCACCGTCGACCTCCCC 61.757 72.222 10.58 0.00 0.00 4.81
4062 7068 3.002965 CGTTGTTGAAGAGGTAAACACCC 59.997 47.826 0.00 0.00 33.73 4.61
4274 7288 4.999950 GGCCTAGACAATGAATGGACATAG 59.000 45.833 0.00 0.00 0.00 2.23
4281 7295 3.881688 CTGGAAGGCCTAGACAATGAATG 59.118 47.826 5.16 0.00 34.31 2.67
4305 7319 2.364324 TCCACTCGCTCAACTACAACTT 59.636 45.455 0.00 0.00 0.00 2.66
4315 7329 1.219124 GGCATCTTCCACTCGCTCA 59.781 57.895 0.00 0.00 0.00 4.26
4403 7417 1.954382 AGCCGAAACTTTCAAAGACCC 59.046 47.619 3.49 0.00 0.00 4.46
4440 7454 3.132111 TGCAATCGTAGATAGCCTGTGAA 59.868 43.478 0.00 0.00 45.12 3.18
4482 7499 4.566545 AAATTCAGTTTCATGCGTGTGA 57.433 36.364 5.68 0.00 0.00 3.58
4487 7504 8.157813 CACTTGATTTAAATTCAGTTTCATGCG 58.842 33.333 1.43 0.00 0.00 4.73
4515 7532 4.458397 ACATCATGGTTCTGTGATCATCC 58.542 43.478 0.00 0.00 32.98 3.51
4521 7538 7.284261 TCAAGTTTTAACATCATGGTTCTGTGA 59.716 33.333 0.00 0.00 32.29 3.58
4524 7541 8.870160 TTTCAAGTTTTAACATCATGGTTCTG 57.130 30.769 0.00 0.00 32.29 3.02
4527 7544 7.710475 CCACTTTCAAGTTTTAACATCATGGTT 59.290 33.333 0.00 0.00 37.08 3.67
4531 7548 6.925165 CAGCCACTTTCAAGTTTTAACATCAT 59.075 34.615 0.00 0.00 37.08 2.45
4539 7556 4.220602 ACTGAACAGCCACTTTCAAGTTTT 59.779 37.500 1.46 0.00 37.08 2.43
4543 7560 4.107622 CAAACTGAACAGCCACTTTCAAG 58.892 43.478 1.46 0.00 31.41 3.02
4559 7576 8.197439 AGTAAATGAGGGAACTTTTTCAAACTG 58.803 33.333 0.00 0.00 44.43 3.16
4573 7590 3.695060 GACAGAGTCGAGTAAATGAGGGA 59.305 47.826 0.00 0.00 0.00 4.20
4619 7638 4.803098 AGTAAGGCAGTACACTAGGTTG 57.197 45.455 0.00 0.00 0.00 3.77
4628 7647 4.465305 TCTCAGGGTTAAGTAAGGCAGTAC 59.535 45.833 0.00 0.00 0.00 2.73
4631 7650 3.118592 CCTCTCAGGGTTAAGTAAGGCAG 60.119 52.174 0.00 0.00 0.00 4.85
4646 7665 3.107601 TGGTCCATCTTTACCCTCTCAG 58.892 50.000 0.00 0.00 34.69 3.35
4675 7694 3.389329 CAGCACTACCTAGGATCCACATT 59.611 47.826 17.98 0.00 0.00 2.71
4798 7827 3.978687 ACAGAAACACGGTCTGAAGTAG 58.021 45.455 8.36 0.00 44.44 2.57
4806 7835 3.982576 ATTTGGAACAGAAACACGGTC 57.017 42.857 0.00 0.00 42.39 4.79
4825 7854 7.202001 CCTTGTTCTGTTTTCCCCTTTTCTTAT 60.202 37.037 0.00 0.00 0.00 1.73
4952 7981 4.759782 ACGGAGAGTATGAGTCCAAAATG 58.240 43.478 0.00 0.00 0.00 2.32
4966 7995 9.939802 AAAGACAAATATTTAGTAACGGAGAGT 57.060 29.630 0.00 0.00 0.00 3.24
4984 8013 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4985 8014 8.964476 ACTTGTTGAAATCTCTAGAAAGACAA 57.036 30.769 0.00 0.00 0.00 3.18
4995 8024 9.355215 CGTATGTAGTTACTTGTTGAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
4996 8025 9.350357 TCGTATGTAGTTACTTGTTGAAATCTC 57.650 33.333 0.00 0.00 0.00 2.75
4997 8026 9.701098 TTCGTATGTAGTTACTTGTTGAAATCT 57.299 29.630 0.00 0.00 0.00 2.40
4998 8027 9.953825 CTTCGTATGTAGTTACTTGTTGAAATC 57.046 33.333 0.00 0.00 0.00 2.17
4999 8028 8.440833 GCTTCGTATGTAGTTACTTGTTGAAAT 58.559 33.333 0.00 0.00 0.00 2.17
5000 8029 7.438757 TGCTTCGTATGTAGTTACTTGTTGAAA 59.561 33.333 0.00 0.00 0.00 2.69
5001 8030 6.924612 TGCTTCGTATGTAGTTACTTGTTGAA 59.075 34.615 0.00 0.00 0.00 2.69
5002 8031 6.448852 TGCTTCGTATGTAGTTACTTGTTGA 58.551 36.000 0.00 0.00 0.00 3.18
5003 8032 6.699895 TGCTTCGTATGTAGTTACTTGTTG 57.300 37.500 0.00 0.00 0.00 3.33
5004 8033 7.718272 TTTGCTTCGTATGTAGTTACTTGTT 57.282 32.000 0.00 0.00 0.00 2.83
5005 8034 7.718272 TTTTGCTTCGTATGTAGTTACTTGT 57.282 32.000 0.00 0.00 0.00 3.16
5006 8035 8.440059 TCATTTTGCTTCGTATGTAGTTACTTG 58.560 33.333 0.00 0.00 0.00 3.16
5007 8036 8.542497 TCATTTTGCTTCGTATGTAGTTACTT 57.458 30.769 0.00 0.00 0.00 2.24
5008 8037 8.542497 TTCATTTTGCTTCGTATGTAGTTACT 57.458 30.769 0.00 0.00 0.00 2.24
5009 8038 9.210426 CATTCATTTTGCTTCGTATGTAGTTAC 57.790 33.333 0.00 0.00 0.00 2.50
5010 8039 9.157104 TCATTCATTTTGCTTCGTATGTAGTTA 57.843 29.630 0.00 0.00 0.00 2.24
5011 8040 8.039603 TCATTCATTTTGCTTCGTATGTAGTT 57.960 30.769 0.00 0.00 0.00 2.24
5012 8041 7.609760 TCATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
5013 8042 9.507280 AATTCATTCATTTTGCTTCGTATGTAG 57.493 29.630 0.00 0.00 0.00 2.74
5014 8043 9.853555 AAATTCATTCATTTTGCTTCGTATGTA 57.146 25.926 0.00 0.00 0.00 2.29
5015 8044 8.761575 AAATTCATTCATTTTGCTTCGTATGT 57.238 26.923 0.00 0.00 0.00 2.29
5017 8046 9.853555 TGTAAATTCATTCATTTTGCTTCGTAT 57.146 25.926 0.00 0.00 0.00 3.06
5018 8047 9.123709 GTGTAAATTCATTCATTTTGCTTCGTA 57.876 29.630 0.00 0.00 0.00 3.43
5019 8048 7.867403 AGTGTAAATTCATTCATTTTGCTTCGT 59.133 29.630 0.00 0.00 0.00 3.85
5020 8049 8.231304 AGTGTAAATTCATTCATTTTGCTTCG 57.769 30.769 0.00 0.00 0.00 3.79
5021 8050 9.415544 AGAGTGTAAATTCATTCATTTTGCTTC 57.584 29.630 0.00 0.00 0.00 3.86
5062 8091 9.416284 TCAAATGGACTACTACATACAGATGTA 57.584 33.333 0.00 0.00 44.77 2.29
5064 8093 9.599866 TTTCAAATGGACTACTACATACAGATG 57.400 33.333 0.00 0.00 39.16 2.90
5066 8095 9.817809 GATTTCAAATGGACTACTACATACAGA 57.182 33.333 0.00 0.00 0.00 3.41
5067 8096 9.823647 AGATTTCAAATGGACTACTACATACAG 57.176 33.333 0.00 0.00 0.00 2.74
5068 8097 9.817809 GAGATTTCAAATGGACTACTACATACA 57.182 33.333 0.00 0.00 0.00 2.29
5078 8107 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
5079 8108 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
5097 8126 9.908152 CCCTTCGTTTCTAAATATTTGTCTTTT 57.092 29.630 11.05 0.00 0.00 2.27
5098 8127 9.292195 TCCCTTCGTTTCTAAATATTTGTCTTT 57.708 29.630 11.05 0.00 0.00 2.52
5099 8128 8.857694 TCCCTTCGTTTCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
5100 8129 8.101419 ACTCCCTTCGTTTCTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
5101 8130 8.265165 ACTCCCTTCGTTTCTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
5102 8131 9.379791 CTACTCCCTTCGTTTCTAAATATTTGT 57.620 33.333 11.05 0.00 0.00 2.83
5103 8132 9.595823 TCTACTCCCTTCGTTTCTAAATATTTG 57.404 33.333 11.05 1.65 0.00 2.32
5106 8135 9.984190 GAATCTACTCCCTTCGTTTCTAAATAT 57.016 33.333 0.00 0.00 0.00 1.28
5107 8136 8.974238 TGAATCTACTCCCTTCGTTTCTAAATA 58.026 33.333 0.00 0.00 0.00 1.40
5108 8137 7.848128 TGAATCTACTCCCTTCGTTTCTAAAT 58.152 34.615 0.00 0.00 0.00 1.40
5109 8138 7.235935 TGAATCTACTCCCTTCGTTTCTAAA 57.764 36.000 0.00 0.00 0.00 1.85
5110 8139 6.845758 TGAATCTACTCCCTTCGTTTCTAA 57.154 37.500 0.00 0.00 0.00 2.10
5111 8140 6.845758 TTGAATCTACTCCCTTCGTTTCTA 57.154 37.500 0.00 0.00 0.00 2.10
5112 8141 5.740290 TTGAATCTACTCCCTTCGTTTCT 57.260 39.130 0.00 0.00 0.00 2.52
5113 8142 5.932883 ACTTTGAATCTACTCCCTTCGTTTC 59.067 40.000 0.00 0.00 0.00 2.78
5114 8143 5.866207 ACTTTGAATCTACTCCCTTCGTTT 58.134 37.500 0.00 0.00 0.00 3.60
5115 8144 5.485209 ACTTTGAATCTACTCCCTTCGTT 57.515 39.130 0.00 0.00 0.00 3.85
5116 8145 5.715753 AGTACTTTGAATCTACTCCCTTCGT 59.284 40.000 0.00 0.00 0.00 3.85
5117 8146 6.210287 AGTACTTTGAATCTACTCCCTTCG 57.790 41.667 0.00 0.00 0.00 3.79
5118 8147 8.296211 ACTAGTACTTTGAATCTACTCCCTTC 57.704 38.462 0.00 0.00 0.00 3.46
5119 8148 9.187996 GTACTAGTACTTTGAATCTACTCCCTT 57.812 37.037 23.17 0.00 33.45 3.95
5120 8149 8.334734 TGTACTAGTACTTTGAATCTACTCCCT 58.665 37.037 28.56 0.00 37.00 4.20
5121 8150 8.517062 TGTACTAGTACTTTGAATCTACTCCC 57.483 38.462 28.56 2.12 37.00 4.30
5286 8315 5.644977 TTGTCGATTGAGATGTGTACTCT 57.355 39.130 0.00 0.00 35.66 3.24
5287 8316 6.893958 ATTTGTCGATTGAGATGTGTACTC 57.106 37.500 0.00 0.00 35.26 2.59
5288 8317 7.042456 GCATATTTGTCGATTGAGATGTGTACT 60.042 37.037 0.00 0.00 0.00 2.73
5289 8318 7.065894 GCATATTTGTCGATTGAGATGTGTAC 58.934 38.462 0.00 0.00 0.00 2.90
5290 8319 6.760770 TGCATATTTGTCGATTGAGATGTGTA 59.239 34.615 0.00 0.00 0.00 2.90
5291 8320 5.585844 TGCATATTTGTCGATTGAGATGTGT 59.414 36.000 0.00 0.00 0.00 3.72
5292 8321 5.905733 GTGCATATTTGTCGATTGAGATGTG 59.094 40.000 0.00 0.00 0.00 3.21
5318 8347 1.644509 TCTGGGTCATGTAGTGTGCT 58.355 50.000 0.00 0.00 0.00 4.40
5355 8384 4.447290 CCGGTATGGTTGTGTGATATTGA 58.553 43.478 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.