Multiple sequence alignment - TraesCS6A01G023000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G023000 chr6A 100.000 5541 0 0 1 5541 11495875 11501415 0.000000e+00 10233.0
1 TraesCS6A01G023000 chr6A 77.605 3014 545 85 1413 4362 11767755 11764808 0.000000e+00 1707.0
2 TraesCS6A01G023000 chr6A 76.773 2002 369 57 2434 4371 11007954 11005985 0.000000e+00 1033.0
3 TraesCS6A01G023000 chr6A 80.212 1228 199 24 2568 3765 11476349 11477562 0.000000e+00 881.0
4 TraesCS6A01G023000 chr6A 75.535 1402 239 65 3173 4542 11679427 11678098 1.330000e-165 593.0
5 TraesCS6A01G023000 chr6A 75.446 1401 242 60 3173 4542 11730938 11729609 6.180000e-164 588.0
6 TraesCS6A01G023000 chr6A 78.226 496 93 8 3883 4378 10930179 10929699 2.510000e-78 303.0
7 TraesCS6A01G023000 chr6A 75.314 478 92 17 1597 2068 10939781 10939324 7.280000e-49 206.0
8 TraesCS6A01G023000 chr6A 74.519 416 54 26 4540 4932 11729568 11729182 3.480000e-27 134.0
9 TraesCS6A01G023000 chr6A 74.279 416 55 26 4540 4932 11678057 11677671 1.620000e-25 128.0
10 TraesCS6A01G023000 chr6B 90.435 1861 136 16 221 2069 18163868 18165698 0.000000e+00 2412.0
11 TraesCS6A01G023000 chr6B 77.568 3018 523 96 1413 4362 18849280 18846349 0.000000e+00 1681.0
12 TraesCS6A01G023000 chr6B 82.984 1863 260 29 2571 4405 18267695 18269528 0.000000e+00 1631.0
13 TraesCS6A01G023000 chr6B 80.284 2252 285 85 3376 5541 18167071 18169249 0.000000e+00 1552.0
14 TraesCS6A01G023000 chr6B 79.693 2216 368 57 1413 3577 18239723 18241907 0.000000e+00 1524.0
15 TraesCS6A01G023000 chr6B 76.635 2003 365 63 2434 4368 17999839 18001806 0.000000e+00 1011.0
16 TraesCS6A01G023000 chr6B 76.421 2006 373 61 2434 4371 17763388 17761415 0.000000e+00 992.0
17 TraesCS6A01G023000 chr6B 83.583 1066 106 35 3511 4542 18431277 18432307 0.000000e+00 935.0
18 TraesCS6A01G023000 chr6B 80.719 1141 180 23 2569 3680 18813934 18815063 0.000000e+00 852.0
19 TraesCS6A01G023000 chr6B 86.821 736 92 4 2569 3303 18166270 18167001 0.000000e+00 817.0
20 TraesCS6A01G023000 chr6B 83.670 594 79 10 3954 4542 18816930 18817510 1.360000e-150 544.0
21 TraesCS6A01G023000 chr6B 76.000 675 124 25 1422 2068 17729096 17728432 1.160000e-81 315.0
22 TraesCS6A01G023000 chr6B 92.029 138 10 1 4566 4703 18209109 18209245 5.660000e-45 193.0
23 TraesCS6A01G023000 chr6B 89.032 155 13 4 5355 5507 18211083 18211235 7.330000e-44 189.0
24 TraesCS6A01G023000 chr6B 81.720 186 16 6 4621 4789 18210791 18210975 7.480000e-29 139.0
25 TraesCS6A01G023000 chr6B 79.612 206 27 13 440 641 18238513 18238707 3.480000e-27 134.0
26 TraesCS6A01G023000 chr6D 77.719 3016 540 85 1413 4362 10317128 10314179 0.000000e+00 1725.0
27 TraesCS6A01G023000 chr6D 80.380 1789 234 58 3229 4957 9914947 9916678 0.000000e+00 1251.0
28 TraesCS6A01G023000 chr6D 78.701 2033 315 81 2558 4542 10309321 10307359 0.000000e+00 1247.0
29 TraesCS6A01G023000 chr6D 77.590 2008 346 64 2434 4371 9859451 9857478 0.000000e+00 1120.0
30 TraesCS6A01G023000 chr6D 83.866 688 97 9 2572 3249 9914254 9914937 1.300000e-180 643.0
31 TraesCS6A01G023000 chr6D 79.973 739 123 22 2572 3299 9851339 9850615 6.360000e-144 521.0
32 TraesCS6A01G023000 chr6D 75.186 673 131 23 1422 2067 9852567 9851904 9.090000e-73 285.0
33 TraesCS6A01G023000 chr6D 94.643 56 3 0 5252 5307 9930565 9930620 2.750000e-13 87.9
34 TraesCS6A01G023000 chrUn 81.326 1237 190 26 2561 3765 240893035 240894262 0.000000e+00 966.0
35 TraesCS6A01G023000 chrUn 81.290 1240 191 26 2561 3768 268930865 268929635 0.000000e+00 966.0
36 TraesCS6A01G023000 chrUn 79.871 775 111 25 3801 4539 240894271 240895036 4.920000e-145 525.0
37 TraesCS6A01G023000 chrUn 79.820 778 112 25 3801 4542 268929629 268928861 4.920000e-145 525.0
38 TraesCS6A01G023000 chrUn 83.108 592 73 16 3148 3714 71243772 71244361 1.060000e-141 514.0
39 TraesCS6A01G023000 chrUn 75.897 390 39 27 5109 5458 240897281 240897655 1.240000e-31 148.0
40 TraesCS6A01G023000 chrUn 75.897 390 39 27 5109 5458 270112276 270112650 1.240000e-31 148.0
41 TraesCS6A01G023000 chrUn 75.897 390 39 27 5109 5458 275228960 275229334 1.240000e-31 148.0
42 TraesCS6A01G023000 chrUn 75.750 400 40 29 5109 5466 307536935 307536551 1.240000e-31 148.0
43 TraesCS6A01G023000 chrUn 77.778 225 30 12 4543 4765 240895073 240895279 2.710000e-23 121.0
44 TraesCS6A01G023000 chrUn 78.818 203 25 10 4564 4765 268928806 268928621 2.710000e-23 121.0
45 TraesCS6A01G023000 chr2D 80.312 706 127 9 1423 2119 647665102 647665804 1.770000e-144 523.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G023000 chr6A 11495875 11501415 5540 False 10233.000000 10233 100.000000 1 5541 1 chr6A.!!$F2 5540
1 TraesCS6A01G023000 chr6A 11764808 11767755 2947 True 1707.000000 1707 77.605000 1413 4362 1 chr6A.!!$R4 2949
2 TraesCS6A01G023000 chr6A 11005985 11007954 1969 True 1033.000000 1033 76.773000 2434 4371 1 chr6A.!!$R3 1937
3 TraesCS6A01G023000 chr6A 11476349 11477562 1213 False 881.000000 881 80.212000 2568 3765 1 chr6A.!!$F1 1197
4 TraesCS6A01G023000 chr6A 11729182 11730938 1756 True 361.000000 588 74.982500 3173 4932 2 chr6A.!!$R6 1759
5 TraesCS6A01G023000 chr6A 11677671 11679427 1756 True 360.500000 593 74.907000 3173 4932 2 chr6A.!!$R5 1759
6 TraesCS6A01G023000 chr6B 18846349 18849280 2931 True 1681.000000 1681 77.568000 1413 4362 1 chr6B.!!$R3 2949
7 TraesCS6A01G023000 chr6B 18267695 18269528 1833 False 1631.000000 1631 82.984000 2571 4405 1 chr6B.!!$F2 1834
8 TraesCS6A01G023000 chr6B 18163868 18169249 5381 False 1593.666667 2412 85.846667 221 5541 3 chr6B.!!$F4 5320
9 TraesCS6A01G023000 chr6B 17999839 18001806 1967 False 1011.000000 1011 76.635000 2434 4368 1 chr6B.!!$F1 1934
10 TraesCS6A01G023000 chr6B 17761415 17763388 1973 True 992.000000 992 76.421000 2434 4371 1 chr6B.!!$R2 1937
11 TraesCS6A01G023000 chr6B 18431277 18432307 1030 False 935.000000 935 83.583000 3511 4542 1 chr6B.!!$F3 1031
12 TraesCS6A01G023000 chr6B 18238513 18241907 3394 False 829.000000 1524 79.652500 440 3577 2 chr6B.!!$F6 3137
13 TraesCS6A01G023000 chr6B 18813934 18817510 3576 False 698.000000 852 82.194500 2569 4542 2 chr6B.!!$F7 1973
14 TraesCS6A01G023000 chr6B 17728432 17729096 664 True 315.000000 315 76.000000 1422 2068 1 chr6B.!!$R1 646
15 TraesCS6A01G023000 chr6D 10314179 10317128 2949 True 1725.000000 1725 77.719000 1413 4362 1 chr6D.!!$R3 2949
16 TraesCS6A01G023000 chr6D 10307359 10309321 1962 True 1247.000000 1247 78.701000 2558 4542 1 chr6D.!!$R2 1984
17 TraesCS6A01G023000 chr6D 9857478 9859451 1973 True 1120.000000 1120 77.590000 2434 4371 1 chr6D.!!$R1 1937
18 TraesCS6A01G023000 chr6D 9914254 9916678 2424 False 947.000000 1251 82.123000 2572 4957 2 chr6D.!!$F2 2385
19 TraesCS6A01G023000 chr6D 9850615 9852567 1952 True 403.000000 521 77.579500 1422 3299 2 chr6D.!!$R4 1877
20 TraesCS6A01G023000 chrUn 268928621 268930865 2244 True 537.333333 966 79.976000 2561 4765 3 chrUn.!!$R2 2204
21 TraesCS6A01G023000 chrUn 71243772 71244361 589 False 514.000000 514 83.108000 3148 3714 1 chrUn.!!$F1 566
22 TraesCS6A01G023000 chrUn 240893035 240897655 4620 False 440.000000 966 78.718000 2561 5458 4 chrUn.!!$F4 2897
23 TraesCS6A01G023000 chr2D 647665102 647665804 702 False 523.000000 523 80.312000 1423 2119 1 chr2D.!!$F1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 673 0.103937 GCTCTCCGATCTGGTTCTGG 59.896 60.0 3.97 0.0 39.52 3.86 F
1408 1846 0.179084 GCGGTCCTTACAGCTGCATA 60.179 55.0 15.27 0.0 42.71 3.14 F
2462 2987 0.108472 GCTTCAGCTTTTCATGGCCC 60.108 55.0 0.00 0.0 38.21 5.80 F
3310 3939 0.043940 AGGTCCCTCTCTGCTGGATT 59.956 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2333 2849 0.179018 GTGAAGTCCAGTGTGGCCTT 60.179 55.0 3.32 0.00 38.61 4.35 R
2930 3485 0.248289 CCAATTCTTTGCAGCCCCTG 59.752 55.0 0.00 0.00 34.12 4.45 R
4069 6401 0.109597 CAGGTGGATGCGCTTCAAAC 60.110 55.0 22.93 15.95 0.00 2.93 R
4618 7035 0.110486 ACACCAATCAAGCGGGAAGT 59.890 50.0 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.562506 TCGCATATCTAGTAAATAGCGCT 57.437 39.130 17.26 17.26 43.19 5.92
24 25 5.332707 TCGCATATCTAGTAAATAGCGCTG 58.667 41.667 22.90 0.00 43.19 5.18
25 26 5.123344 TCGCATATCTAGTAAATAGCGCTGA 59.877 40.000 22.90 6.17 43.19 4.26
26 27 5.974158 CGCATATCTAGTAAATAGCGCTGAT 59.026 40.000 22.90 13.79 37.43 2.90
27 28 7.012044 TCGCATATCTAGTAAATAGCGCTGATA 59.988 37.037 22.90 15.59 43.19 2.15
28 29 7.112287 CGCATATCTAGTAAATAGCGCTGATAC 59.888 40.741 22.90 18.92 37.43 2.24
29 30 7.915923 GCATATCTAGTAAATAGCGCTGATACA 59.084 37.037 22.90 0.00 0.00 2.29
30 31 9.958234 CATATCTAGTAAATAGCGCTGATACAT 57.042 33.333 22.90 11.63 0.00 2.29
34 35 9.011095 TCTAGTAAATAGCGCTGATACATTAGT 57.989 33.333 22.90 13.88 0.00 2.24
35 36 9.627395 CTAGTAAATAGCGCTGATACATTAGTT 57.373 33.333 22.90 5.24 0.00 2.24
36 37 8.522178 AGTAAATAGCGCTGATACATTAGTTC 57.478 34.615 22.90 3.33 0.00 3.01
37 38 8.361139 AGTAAATAGCGCTGATACATTAGTTCT 58.639 33.333 22.90 5.41 0.00 3.01
38 39 8.979574 GTAAATAGCGCTGATACATTAGTTCTT 58.020 33.333 22.90 0.00 0.00 2.52
40 41 9.542462 AAATAGCGCTGATACATTAGTTCTTAA 57.458 29.630 22.90 0.00 0.00 1.85
41 42 9.542462 AATAGCGCTGATACATTAGTTCTTAAA 57.458 29.630 22.90 0.00 0.00 1.52
42 43 9.712305 ATAGCGCTGATACATTAGTTCTTAAAT 57.288 29.630 22.90 0.00 0.00 1.40
44 45 9.712305 AGCGCTGATACATTAGTTCTTAAATAT 57.288 29.630 10.39 0.00 0.00 1.28
55 56 9.712359 ATTAGTTCTTAAATATTTTCGCGTTCC 57.288 29.630 5.77 0.00 0.00 3.62
56 57 7.373778 AGTTCTTAAATATTTTCGCGTTCCT 57.626 32.000 5.77 0.00 0.00 3.36
57 58 7.813645 AGTTCTTAAATATTTTCGCGTTCCTT 58.186 30.769 5.77 0.00 0.00 3.36
58 59 7.749126 AGTTCTTAAATATTTTCGCGTTCCTTG 59.251 33.333 5.77 0.00 0.00 3.61
59 60 6.025280 TCTTAAATATTTTCGCGTTCCTTGC 58.975 36.000 5.77 0.00 0.00 4.01
60 61 3.840890 AATATTTTCGCGTTCCTTGCA 57.159 38.095 5.77 0.00 0.00 4.08
61 62 2.892373 TATTTTCGCGTTCCTTGCAG 57.108 45.000 5.77 0.00 0.00 4.41
62 63 0.951558 ATTTTCGCGTTCCTTGCAGT 59.048 45.000 5.77 0.00 0.00 4.40
63 64 0.306533 TTTTCGCGTTCCTTGCAGTC 59.693 50.000 5.77 0.00 0.00 3.51
64 65 0.812014 TTTCGCGTTCCTTGCAGTCA 60.812 50.000 5.77 0.00 0.00 3.41
65 66 1.495584 TTCGCGTTCCTTGCAGTCAC 61.496 55.000 5.77 0.00 0.00 3.67
66 67 1.956170 CGCGTTCCTTGCAGTCACT 60.956 57.895 0.00 0.00 0.00 3.41
67 68 0.666274 CGCGTTCCTTGCAGTCACTA 60.666 55.000 0.00 0.00 0.00 2.74
68 69 1.071605 GCGTTCCTTGCAGTCACTAG 58.928 55.000 0.00 0.00 0.00 2.57
69 70 1.605712 GCGTTCCTTGCAGTCACTAGT 60.606 52.381 0.00 0.00 0.00 2.57
70 71 2.061773 CGTTCCTTGCAGTCACTAGTG 58.938 52.381 17.17 17.17 0.00 2.74
76 77 2.166270 GCAGTCACTAGTGCTTGCC 58.834 57.895 27.42 16.41 46.68 4.52
77 78 1.630244 GCAGTCACTAGTGCTTGCCG 61.630 60.000 27.42 14.61 46.68 5.69
78 79 1.016130 CAGTCACTAGTGCTTGCCGG 61.016 60.000 18.45 0.00 0.00 6.13
79 80 1.004918 GTCACTAGTGCTTGCCGGT 60.005 57.895 18.45 0.00 0.00 5.28
80 81 0.602905 GTCACTAGTGCTTGCCGGTT 60.603 55.000 18.45 0.00 0.00 4.44
81 82 0.602638 TCACTAGTGCTTGCCGGTTG 60.603 55.000 18.45 0.00 0.00 3.77
82 83 0.884704 CACTAGTGCTTGCCGGTTGT 60.885 55.000 10.54 0.00 0.00 3.32
83 84 0.682852 ACTAGTGCTTGCCGGTTGTA 59.317 50.000 1.90 0.00 0.00 2.41
84 85 1.337823 ACTAGTGCTTGCCGGTTGTAG 60.338 52.381 1.90 0.00 0.00 2.74
85 86 0.682852 TAGTGCTTGCCGGTTGTAGT 59.317 50.000 1.90 0.00 0.00 2.73
86 87 0.884704 AGTGCTTGCCGGTTGTAGTG 60.885 55.000 1.90 0.00 0.00 2.74
87 88 1.599518 TGCTTGCCGGTTGTAGTGG 60.600 57.895 1.90 0.00 0.00 4.00
88 89 1.599797 GCTTGCCGGTTGTAGTGGT 60.600 57.895 1.90 0.00 0.00 4.16
89 90 1.170290 GCTTGCCGGTTGTAGTGGTT 61.170 55.000 1.90 0.00 0.00 3.67
90 91 1.878948 GCTTGCCGGTTGTAGTGGTTA 60.879 52.381 1.90 0.00 0.00 2.85
91 92 1.802365 CTTGCCGGTTGTAGTGGTTAC 59.198 52.381 1.90 0.00 0.00 2.50
92 93 0.319727 TGCCGGTTGTAGTGGTTACG 60.320 55.000 1.90 0.00 34.87 3.18
93 94 1.629345 GCCGGTTGTAGTGGTTACGC 61.629 60.000 1.90 0.00 34.87 4.42
94 95 0.319727 CCGGTTGTAGTGGTTACGCA 60.320 55.000 0.00 0.00 34.87 5.24
95 96 1.500108 CGGTTGTAGTGGTTACGCAA 58.500 50.000 0.00 0.00 34.87 4.85
96 97 1.865970 CGGTTGTAGTGGTTACGCAAA 59.134 47.619 0.00 0.00 34.87 3.68
97 98 2.348779 CGGTTGTAGTGGTTACGCAAAC 60.349 50.000 0.00 0.00 34.87 2.93
98 99 2.613133 GGTTGTAGTGGTTACGCAAACA 59.387 45.455 3.92 0.00 40.08 2.83
99 100 3.303526 GGTTGTAGTGGTTACGCAAACAG 60.304 47.826 0.00 0.00 40.08 3.16
100 101 3.182341 TGTAGTGGTTACGCAAACAGT 57.818 42.857 0.00 0.00 40.08 3.55
101 102 3.533547 TGTAGTGGTTACGCAAACAGTT 58.466 40.909 0.00 0.00 40.08 3.16
102 103 3.556775 TGTAGTGGTTACGCAAACAGTTC 59.443 43.478 0.00 0.00 40.08 3.01
103 104 2.914059 AGTGGTTACGCAAACAGTTCT 58.086 42.857 0.00 0.00 40.08 3.01
104 105 3.275999 AGTGGTTACGCAAACAGTTCTT 58.724 40.909 0.00 0.00 40.08 2.52
105 106 3.064820 AGTGGTTACGCAAACAGTTCTTG 59.935 43.478 0.00 0.00 40.08 3.02
106 107 3.011119 TGGTTACGCAAACAGTTCTTGT 58.989 40.909 3.92 0.00 43.45 3.16
107 108 3.181505 TGGTTACGCAAACAGTTCTTGTG 60.182 43.478 3.92 0.00 40.74 3.33
108 109 3.181504 GGTTACGCAAACAGTTCTTGTGT 60.182 43.478 8.79 8.79 46.37 3.72
109 110 4.408694 GTTACGCAAACAGTTCTTGTGTT 58.591 39.130 9.01 0.00 43.19 3.32
110 111 3.131240 ACGCAAACAGTTCTTGTGTTC 57.869 42.857 0.00 0.00 43.19 3.18
111 112 2.747446 ACGCAAACAGTTCTTGTGTTCT 59.253 40.909 0.00 0.00 43.19 3.01
112 113 3.190535 ACGCAAACAGTTCTTGTGTTCTT 59.809 39.130 0.00 0.00 43.19 2.52
113 114 3.543494 CGCAAACAGTTCTTGTGTTCTTG 59.457 43.478 0.00 0.00 40.74 3.02
114 115 3.304293 GCAAACAGTTCTTGTGTTCTTGC 59.696 43.478 0.00 0.00 40.52 4.01
115 116 3.782889 AACAGTTCTTGTGTTCTTGCC 57.217 42.857 0.00 0.00 40.74 4.52
116 117 1.670811 ACAGTTCTTGTGTTCTTGCCG 59.329 47.619 0.00 0.00 38.99 5.69
117 118 1.002468 CAGTTCTTGTGTTCTTGCCGG 60.002 52.381 0.00 0.00 0.00 6.13
118 119 1.021968 GTTCTTGTGTTCTTGCCGGT 58.978 50.000 1.90 0.00 0.00 5.28
119 120 1.404035 GTTCTTGTGTTCTTGCCGGTT 59.596 47.619 1.90 0.00 0.00 4.44
120 121 1.021202 TCTTGTGTTCTTGCCGGTTG 58.979 50.000 1.90 0.00 0.00 3.77
121 122 0.738389 CTTGTGTTCTTGCCGGTTGT 59.262 50.000 1.90 0.00 0.00 3.32
122 123 1.944024 CTTGTGTTCTTGCCGGTTGTA 59.056 47.619 1.90 0.00 0.00 2.41
123 124 1.588674 TGTGTTCTTGCCGGTTGTAG 58.411 50.000 1.90 0.00 0.00 2.74
124 125 1.139256 TGTGTTCTTGCCGGTTGTAGA 59.861 47.619 1.90 0.00 0.00 2.59
125 126 1.798813 GTGTTCTTGCCGGTTGTAGAG 59.201 52.381 1.90 0.00 0.00 2.43
126 127 1.689813 TGTTCTTGCCGGTTGTAGAGA 59.310 47.619 1.90 0.00 0.00 3.10
127 128 2.301870 TGTTCTTGCCGGTTGTAGAGAT 59.698 45.455 1.90 0.00 0.00 2.75
128 129 3.244422 TGTTCTTGCCGGTTGTAGAGATT 60.244 43.478 1.90 0.00 0.00 2.40
129 130 3.695830 TCTTGCCGGTTGTAGAGATTT 57.304 42.857 1.90 0.00 0.00 2.17
130 131 3.596214 TCTTGCCGGTTGTAGAGATTTC 58.404 45.455 1.90 0.00 0.00 2.17
131 132 3.007506 TCTTGCCGGTTGTAGAGATTTCA 59.992 43.478 1.90 0.00 0.00 2.69
132 133 3.627395 TGCCGGTTGTAGAGATTTCAT 57.373 42.857 1.90 0.00 0.00 2.57
133 134 4.746535 TGCCGGTTGTAGAGATTTCATA 57.253 40.909 1.90 0.00 0.00 2.15
134 135 5.092554 TGCCGGTTGTAGAGATTTCATAA 57.907 39.130 1.90 0.00 0.00 1.90
135 136 4.873827 TGCCGGTTGTAGAGATTTCATAAC 59.126 41.667 1.90 0.00 0.00 1.89
136 137 5.116882 GCCGGTTGTAGAGATTTCATAACT 58.883 41.667 1.90 0.00 0.00 2.24
137 138 5.006746 GCCGGTTGTAGAGATTTCATAACTG 59.993 44.000 1.90 0.00 0.00 3.16
138 139 6.338146 CCGGTTGTAGAGATTTCATAACTGA 58.662 40.000 0.00 0.00 0.00 3.41
139 140 6.986817 CCGGTTGTAGAGATTTCATAACTGAT 59.013 38.462 0.00 0.00 0.00 2.90
140 141 7.495934 CCGGTTGTAGAGATTTCATAACTGATT 59.504 37.037 0.00 0.00 0.00 2.57
141 142 8.883731 CGGTTGTAGAGATTTCATAACTGATTT 58.116 33.333 0.00 0.00 0.00 2.17
157 158 7.829378 AACTGATTTAAGTACGATGAGTTCC 57.171 36.000 0.00 0.00 0.00 3.62
158 159 6.338937 ACTGATTTAAGTACGATGAGTTCCC 58.661 40.000 0.00 0.00 0.00 3.97
159 160 6.070995 ACTGATTTAAGTACGATGAGTTCCCA 60.071 38.462 0.00 0.00 0.00 4.37
160 161 6.884832 TGATTTAAGTACGATGAGTTCCCAT 58.115 36.000 0.00 0.00 0.00 4.00
161 162 7.335627 TGATTTAAGTACGATGAGTTCCCATT 58.664 34.615 0.00 0.00 0.00 3.16
162 163 7.827236 TGATTTAAGTACGATGAGTTCCCATTT 59.173 33.333 0.00 0.00 0.00 2.32
163 164 7.989416 TTTAAGTACGATGAGTTCCCATTTT 57.011 32.000 0.00 0.00 0.00 1.82
164 165 7.989416 TTAAGTACGATGAGTTCCCATTTTT 57.011 32.000 0.00 0.00 0.00 1.94
186 187 7.404671 TTTTTCTGACTTCAAGCTTAAACCT 57.595 32.000 0.00 0.00 0.00 3.50
187 188 7.404671 TTTTCTGACTTCAAGCTTAAACCTT 57.595 32.000 0.00 0.00 0.00 3.50
188 189 6.619801 TTCTGACTTCAAGCTTAAACCTTC 57.380 37.500 0.00 0.00 0.00 3.46
189 190 4.750098 TCTGACTTCAAGCTTAAACCTTCG 59.250 41.667 0.00 0.00 0.00 3.79
190 191 4.699637 TGACTTCAAGCTTAAACCTTCGA 58.300 39.130 0.00 0.00 0.00 3.71
191 192 5.305585 TGACTTCAAGCTTAAACCTTCGAT 58.694 37.500 0.00 0.00 0.00 3.59
192 193 5.408604 TGACTTCAAGCTTAAACCTTCGATC 59.591 40.000 0.00 0.00 0.00 3.69
193 194 5.305585 ACTTCAAGCTTAAACCTTCGATCA 58.694 37.500 0.00 0.00 0.00 2.92
194 195 5.763204 ACTTCAAGCTTAAACCTTCGATCAA 59.237 36.000 0.00 0.00 0.00 2.57
195 196 6.431234 ACTTCAAGCTTAAACCTTCGATCAAT 59.569 34.615 0.00 0.00 0.00 2.57
196 197 6.182039 TCAAGCTTAAACCTTCGATCAATG 57.818 37.500 0.00 0.00 0.00 2.82
197 198 5.705441 TCAAGCTTAAACCTTCGATCAATGT 59.295 36.000 0.00 0.00 0.00 2.71
198 199 6.876789 TCAAGCTTAAACCTTCGATCAATGTA 59.123 34.615 0.00 0.00 0.00 2.29
199 200 7.552687 TCAAGCTTAAACCTTCGATCAATGTAT 59.447 33.333 0.00 0.00 0.00 2.29
200 201 7.251704 AGCTTAAACCTTCGATCAATGTATG 57.748 36.000 0.00 0.00 0.00 2.39
201 202 7.047891 AGCTTAAACCTTCGATCAATGTATGA 58.952 34.615 0.00 0.00 43.67 2.15
202 203 7.552687 AGCTTAAACCTTCGATCAATGTATGAA 59.447 33.333 0.00 0.00 42.54 2.57
203 204 7.852945 GCTTAAACCTTCGATCAATGTATGAAG 59.147 37.037 0.00 0.00 42.54 3.02
204 205 5.741388 AACCTTCGATCAATGTATGAAGC 57.259 39.130 0.00 0.00 42.54 3.86
205 206 4.769688 ACCTTCGATCAATGTATGAAGCA 58.230 39.130 0.00 0.00 42.54 3.91
206 207 5.371526 ACCTTCGATCAATGTATGAAGCAT 58.628 37.500 0.00 0.00 42.54 3.79
207 208 5.824624 ACCTTCGATCAATGTATGAAGCATT 59.175 36.000 0.00 0.00 42.54 3.56
208 209 6.319658 ACCTTCGATCAATGTATGAAGCATTT 59.680 34.615 0.00 0.00 42.54 2.32
209 210 7.148018 ACCTTCGATCAATGTATGAAGCATTTT 60.148 33.333 0.00 0.00 42.54 1.82
210 211 7.377928 CCTTCGATCAATGTATGAAGCATTTTC 59.622 37.037 0.00 0.00 42.54 2.29
211 212 7.558161 TCGATCAATGTATGAAGCATTTTCT 57.442 32.000 0.00 0.00 42.54 2.52
212 213 7.412063 TCGATCAATGTATGAAGCATTTTCTG 58.588 34.615 0.00 0.00 42.54 3.02
213 214 7.280652 TCGATCAATGTATGAAGCATTTTCTGA 59.719 33.333 0.00 0.00 42.54 3.27
214 215 8.074370 CGATCAATGTATGAAGCATTTTCTGAT 58.926 33.333 0.00 0.00 42.54 2.90
215 216 9.745880 GATCAATGTATGAAGCATTTTCTGATT 57.254 29.630 0.00 0.00 42.54 2.57
217 218 9.577110 TCAATGTATGAAGCATTTTCTGATTTC 57.423 29.630 0.00 0.00 32.49 2.17
218 219 9.582431 CAATGTATGAAGCATTTTCTGATTTCT 57.418 29.630 0.00 0.00 32.49 2.52
219 220 9.582431 AATGTATGAAGCATTTTCTGATTTCTG 57.418 29.630 0.00 0.00 32.49 3.02
223 224 7.149569 TGAAGCATTTTCTGATTTCTGTAGG 57.850 36.000 0.00 0.00 32.49 3.18
230 231 8.954350 CATTTTCTGATTTCTGTAGGAATCTGT 58.046 33.333 12.77 0.00 33.53 3.41
234 235 7.776107 TCTGATTTCTGTAGGAATCTGTGTAG 58.224 38.462 12.77 3.59 33.53 2.74
250 251 6.820335 TCTGTGTAGCACATCAAGCTATAAT 58.180 36.000 2.25 0.00 45.38 1.28
252 253 8.421002 TCTGTGTAGCACATCAAGCTATAATTA 58.579 33.333 2.25 0.00 45.38 1.40
253 254 8.593492 TGTGTAGCACATCAAGCTATAATTAG 57.407 34.615 0.00 0.00 45.38 1.73
259 260 9.664332 AGCACATCAAGCTATAATTAGGATTAG 57.336 33.333 0.00 0.00 41.32 1.73
274 275 2.101582 GGATTAGAGACACGAGCCACAT 59.898 50.000 0.00 0.00 0.00 3.21
291 292 4.737054 CCACATTCCTGAACATAACTTGC 58.263 43.478 0.00 0.00 0.00 4.01
298 299 3.498397 CCTGAACATAACTTGCAGAACGT 59.502 43.478 0.00 0.00 0.00 3.99
334 336 8.111545 TCCTTCTAATGTCACTGTACCTTACTA 58.888 37.037 0.00 0.00 0.00 1.82
349 351 5.321102 ACCTTACTACAATGGCAATGAACA 58.679 37.500 10.01 0.00 0.00 3.18
358 360 5.163723 ACAATGGCAATGAACATTAGACGAG 60.164 40.000 10.01 0.00 35.67 4.18
363 365 5.043903 GCAATGAACATTAGACGAGAGCTA 58.956 41.667 0.00 0.00 0.00 3.32
372 374 7.952671 ACATTAGACGAGAGCTATTCCATTAA 58.047 34.615 0.00 0.00 0.00 1.40
388 391 7.962964 TTCCATTAATTAGTAGCAAGATCGG 57.037 36.000 0.00 0.00 0.00 4.18
392 395 7.116948 CCATTAATTAGTAGCAAGATCGGACAG 59.883 40.741 0.00 0.00 0.00 3.51
393 396 5.854010 AATTAGTAGCAAGATCGGACAGA 57.146 39.130 0.00 0.00 0.00 3.41
394 397 4.902443 TTAGTAGCAAGATCGGACAGAG 57.098 45.455 0.00 0.00 0.00 3.35
395 398 3.006112 AGTAGCAAGATCGGACAGAGA 57.994 47.619 0.00 0.00 0.00 3.10
396 399 2.948979 AGTAGCAAGATCGGACAGAGAG 59.051 50.000 0.00 0.00 0.00 3.20
397 400 1.110442 AGCAAGATCGGACAGAGAGG 58.890 55.000 0.00 0.00 0.00 3.69
398 401 1.107114 GCAAGATCGGACAGAGAGGA 58.893 55.000 0.00 0.00 0.00 3.71
399 402 1.202359 GCAAGATCGGACAGAGAGGAC 60.202 57.143 0.00 0.00 0.00 3.85
400 403 2.095461 CAAGATCGGACAGAGAGGACA 58.905 52.381 0.00 0.00 0.00 4.02
401 404 2.493675 CAAGATCGGACAGAGAGGACAA 59.506 50.000 0.00 0.00 0.00 3.18
405 408 1.216710 GGACAGAGAGGACAAGCCG 59.783 63.158 0.00 0.00 43.43 5.52
410 413 1.078848 GAGAGGACAAGCCGTGCAT 60.079 57.895 0.00 0.00 43.43 3.96
418 421 3.492313 GACAAGCCGTGCATTCTTTTAG 58.508 45.455 0.00 0.00 0.00 1.85
428 431 6.688813 CCGTGCATTCTTTTAGCTTTATCTTC 59.311 38.462 0.00 0.00 0.00 2.87
438 441 9.922305 CTTTTAGCTTTATCTTCAAATCCTACG 57.078 33.333 0.00 0.00 0.00 3.51
458 461 1.706287 GCTAGCCGGCTACAAGCAAC 61.706 60.000 34.40 11.51 44.75 4.17
492 495 6.215845 TCCATCTTTAGCAAAAGCAAAAGAC 58.784 36.000 0.00 0.00 41.64 3.01
615 619 2.992543 TGCAAAGCACCGCAAATATTTC 59.007 40.909 0.00 0.00 34.59 2.17
657 667 2.548875 CTCTTTTGCTCTCCGATCTGG 58.451 52.381 0.00 0.00 40.09 3.86
660 670 2.386661 TTTGCTCTCCGATCTGGTTC 57.613 50.000 3.97 0.00 39.52 3.62
662 672 0.820226 TGCTCTCCGATCTGGTTCTG 59.180 55.000 3.97 0.00 39.52 3.02
663 673 0.103937 GCTCTCCGATCTGGTTCTGG 59.896 60.000 3.97 0.00 39.52 3.86
664 674 1.479709 CTCTCCGATCTGGTTCTGGT 58.520 55.000 3.97 0.00 39.52 4.00
665 675 1.827969 CTCTCCGATCTGGTTCTGGTT 59.172 52.381 3.97 0.00 39.52 3.67
666 676 3.024547 CTCTCCGATCTGGTTCTGGTTA 58.975 50.000 3.97 0.00 39.52 2.85
668 678 3.637229 TCTCCGATCTGGTTCTGGTTATC 59.363 47.826 3.97 0.00 39.52 1.75
670 680 2.224305 CCGATCTGGTTCTGGTTATCCC 60.224 54.545 0.00 0.00 0.00 3.85
671 681 2.545952 CGATCTGGTTCTGGTTATCCCG 60.546 54.545 0.00 0.00 35.15 5.14
672 682 1.946984 TCTGGTTCTGGTTATCCCGT 58.053 50.000 0.00 0.00 35.15 5.28
673 683 3.104519 TCTGGTTCTGGTTATCCCGTA 57.895 47.619 0.00 0.00 35.15 4.02
674 684 2.762327 TCTGGTTCTGGTTATCCCGTAC 59.238 50.000 0.00 0.00 35.15 3.67
760 770 4.379339 TGTTCAAGGTAACAAAAGGCAC 57.621 40.909 0.00 0.00 36.45 5.01
983 1394 5.726980 ATCTAGTGGCTTGATTTTGCAAA 57.273 34.783 8.05 8.05 0.00 3.68
1005 1424 7.359181 GCAAAATCCTACCAATTAATTATGCGC 60.359 37.037 0.00 0.00 0.00 6.09
1045 1464 5.010922 CACTTTCCATTCACCTTTCATTCCA 59.989 40.000 0.00 0.00 0.00 3.53
1073 1492 6.170506 TGCTTGTTATCGTCTTTATTCCACT 58.829 36.000 0.00 0.00 0.00 4.00
1074 1493 6.653320 TGCTTGTTATCGTCTTTATTCCACTT 59.347 34.615 0.00 0.00 0.00 3.16
1075 1494 7.820386 TGCTTGTTATCGTCTTTATTCCACTTA 59.180 33.333 0.00 0.00 0.00 2.24
1138 1560 5.395682 TTCCTCTTCTTTGCATCAATTGG 57.604 39.130 5.42 0.00 0.00 3.16
1162 1591 6.986231 GGGGTAAATTATTGGCTCAGATTTTG 59.014 38.462 0.00 0.00 0.00 2.44
1173 1602 3.746492 GCTCAGATTTTGTACGTCAGGTT 59.254 43.478 0.00 0.00 0.00 3.50
1201 1630 8.171196 GTCATTAGTTAATCGCATATCCATGTG 58.829 37.037 0.00 0.00 42.88 3.21
1216 1645 2.092753 CCATGTGTCTCCATGCCTAAGT 60.093 50.000 0.00 0.00 40.72 2.24
1220 1649 5.023533 TGTGTCTCCATGCCTAAGTTATC 57.976 43.478 0.00 0.00 0.00 1.75
1347 1776 2.037136 AGTGCCGACTTGCATGCTC 61.037 57.895 20.33 7.33 44.30 4.26
1361 1790 4.334552 TGCATGCTCAAATAAGGAAGACA 58.665 39.130 20.33 0.00 0.00 3.41
1407 1845 1.450312 GCGGTCCTTACAGCTGCAT 60.450 57.895 15.27 0.00 42.71 3.96
1408 1846 0.179084 GCGGTCCTTACAGCTGCATA 60.179 55.000 15.27 0.00 42.71 3.14
1409 1847 1.541233 GCGGTCCTTACAGCTGCATAT 60.541 52.381 15.27 0.00 42.71 1.78
1410 1848 2.288825 GCGGTCCTTACAGCTGCATATA 60.289 50.000 15.27 0.00 42.71 0.86
1411 1849 3.617531 GCGGTCCTTACAGCTGCATATAT 60.618 47.826 15.27 0.00 42.71 0.86
1497 1947 9.778741 ATGAACTCAATAAAAGTAGACAGAACA 57.221 29.630 0.00 0.00 0.00 3.18
1549 1999 1.376424 CATCTGCCGTCCTGCAAGT 60.376 57.895 0.00 0.00 41.51 3.16
1655 2111 0.390998 GGGAGAGCACAAGAGCACTC 60.391 60.000 8.03 8.03 46.95 3.51
1718 2174 5.152097 GTGATGAAGATGTTTGACAAGCAG 58.848 41.667 10.58 0.00 0.00 4.24
1744 2200 4.140536 GAGGAGGATGATTTCAATGGGAC 58.859 47.826 0.00 0.00 0.00 4.46
1865 2321 5.558818 AGCAATGAGGAGATTGACATATCC 58.441 41.667 0.00 0.00 40.70 2.59
1869 2325 7.222161 CAATGAGGAGATTGACATATCCAGAA 58.778 38.462 0.00 0.00 42.61 3.02
1880 2336 5.817296 TGACATATCCAGAATTGGTCTTTCG 59.183 40.000 0.00 0.00 45.26 3.46
1889 2345 3.851458 ATTGGTCTTTCGGTATACCCC 57.149 47.619 16.47 10.60 0.00 4.95
2016 2481 7.048000 GCTTCATGCTATAAGAAAGATCGAG 57.952 40.000 0.00 0.00 38.95 4.04
2039 2504 5.609284 AGAAGAGCTCTGGTCCTATCTACTA 59.391 44.000 19.06 0.00 31.12 1.82
2096 2579 4.256920 ACATCAGTCCTGCAATAGTTGTC 58.743 43.478 0.00 0.00 0.00 3.18
2112 2595 8.495949 CAATAGTTGTCGAGTGTTTCTTGTATT 58.504 33.333 0.00 0.00 0.00 1.89
2119 2602 5.008217 TCGAGTGTTTCTTGTATTTGTTGGG 59.992 40.000 0.00 0.00 0.00 4.12
2147 2636 2.514592 ATCCGCGGCCATCTTGTG 60.515 61.111 23.51 0.00 0.00 3.33
2199 2688 7.502120 ACTTGCAACTATTGGATATGTGATC 57.498 36.000 0.00 0.00 0.00 2.92
2201 2690 5.610398 TGCAACTATTGGATATGTGATCGT 58.390 37.500 0.00 0.00 0.00 3.73
2217 2706 7.946655 TGTGATCGTATCATACAGAAAATCC 57.053 36.000 0.00 0.00 42.04 3.01
2224 2713 8.523658 TCGTATCATACAGAAAATCCCAGATAG 58.476 37.037 0.00 0.00 0.00 2.08
2229 2718 4.848357 ACAGAAAATCCCAGATAGTGGTG 58.152 43.478 0.00 0.00 46.37 4.17
2230 2719 4.536090 ACAGAAAATCCCAGATAGTGGTGA 59.464 41.667 0.00 0.00 46.37 4.02
2231 2720 5.014123 ACAGAAAATCCCAGATAGTGGTGAA 59.986 40.000 0.00 0.00 46.37 3.18
2250 2739 1.251251 AGAAGCATGGCAAGTTGGTC 58.749 50.000 4.75 0.00 0.00 4.02
2258 2747 1.230324 GGCAAGTTGGTCAGACACTC 58.770 55.000 4.75 0.00 0.00 3.51
2277 2769 1.680522 CCAGGGTGAGATCCGACTGG 61.681 65.000 0.00 0.00 39.45 4.00
2278 2770 1.381872 AGGGTGAGATCCGACTGGG 60.382 63.158 0.00 0.00 35.24 4.45
2279 2771 1.686110 GGGTGAGATCCGACTGGGT 60.686 63.158 0.00 0.00 37.00 4.51
2280 2772 0.396695 GGGTGAGATCCGACTGGGTA 60.397 60.000 0.00 0.00 37.00 3.69
2281 2773 1.705873 GGTGAGATCCGACTGGGTAT 58.294 55.000 0.00 0.00 37.00 2.73
2282 2774 1.341531 GGTGAGATCCGACTGGGTATG 59.658 57.143 0.00 0.00 37.00 2.39
2284 2776 2.031870 TGAGATCCGACTGGGTATGTG 58.968 52.381 0.00 0.00 37.00 3.21
2286 2778 2.431057 GAGATCCGACTGGGTATGTGTT 59.569 50.000 0.00 0.00 37.00 3.32
2303 2816 5.375417 TGTGTTACCAGCAGAATGATTTG 57.625 39.130 0.00 0.00 39.69 2.32
2304 2817 5.069318 TGTGTTACCAGCAGAATGATTTGA 58.931 37.500 0.00 0.00 39.69 2.69
2307 2823 2.450476 ACCAGCAGAATGATTTGACCC 58.550 47.619 0.00 0.00 39.69 4.46
2322 2838 1.004277 TGACCCCTCACTTGGTAATGC 59.996 52.381 0.00 0.00 34.20 3.56
2333 2849 6.472016 TCACTTGGTAATGCATACTGAGAAA 58.528 36.000 0.00 0.00 34.74 2.52
2335 2851 7.119699 TCACTTGGTAATGCATACTGAGAAAAG 59.880 37.037 0.00 0.00 34.74 2.27
2405 2924 5.546499 TGGAGTTGTCCCTAGTAGAATGTTT 59.454 40.000 0.00 0.00 43.15 2.83
2462 2987 0.108472 GCTTCAGCTTTTCATGGCCC 60.108 55.000 0.00 0.00 38.21 5.80
2465 2990 2.362889 AGCTTTTCATGGCCCCCG 60.363 61.111 0.00 0.00 0.00 5.73
2469 2994 1.551452 CTTTTCATGGCCCCCGTTTA 58.449 50.000 0.00 0.00 0.00 2.01
2471 2996 1.479709 TTTCATGGCCCCCGTTTATG 58.520 50.000 0.00 0.00 0.00 1.90
2474 2999 1.076339 ATGGCCCCCGTTTATGTGG 60.076 57.895 0.00 0.00 0.00 4.17
2517 3042 0.536006 GCTTGACCACTGCCAAGACT 60.536 55.000 0.00 0.00 41.56 3.24
2520 3045 3.476552 CTTGACCACTGCCAAGACTTAA 58.523 45.455 0.00 0.00 41.56 1.85
2523 3048 3.327757 TGACCACTGCCAAGACTTAAGAT 59.672 43.478 10.09 0.00 0.00 2.40
2538 3090 5.999044 ACTTAAGATCCACAGATGCAGAAT 58.001 37.500 10.09 0.00 30.90 2.40
2544 3099 1.211212 CCACAGATGCAGAATGGAGGA 59.789 52.381 3.56 0.00 42.42 3.71
2549 3104 4.079901 ACAGATGCAGAATGGAGGAAAGAT 60.080 41.667 0.00 0.00 42.42 2.40
2615 3170 2.135933 GTTCTTGACTTGCGCTACACT 58.864 47.619 9.73 0.00 0.00 3.55
2696 3251 3.914426 AACGTAATGGGAGCTGAGAAT 57.086 42.857 0.00 0.00 0.00 2.40
2752 3307 1.062587 CATTCGCAAGCTTCGGGTAAG 59.937 52.381 15.15 0.00 38.32 2.34
2798 3353 6.238320 GCAATAATGTGTTCTCTGAGATGGAC 60.238 42.308 8.42 4.67 0.00 4.02
2801 3356 3.234353 TGTGTTCTCTGAGATGGACAGT 58.766 45.455 8.42 0.00 36.81 3.55
2912 3467 5.371526 GTCACTATTGATGGATGTGATGGT 58.628 41.667 0.00 0.00 39.39 3.55
3032 3593 2.509964 AGTGAAAACCCTCAACCTGACT 59.490 45.455 0.00 0.00 0.00 3.41
3134 3712 2.076863 GTGACACAGTATCAGTTGCCC 58.923 52.381 0.00 0.00 0.00 5.36
3159 3740 0.318107 GCTGCACATTGACACCACAC 60.318 55.000 0.00 0.00 0.00 3.82
3263 3874 6.591935 AGAAATATTTAAGAGTGGATGGCGA 58.408 36.000 0.00 0.00 0.00 5.54
3267 3878 5.757850 ATTTAAGAGTGGATGGCGAATTC 57.242 39.130 0.00 0.00 0.00 2.17
3303 3914 1.408969 GCTCCTTAGGTCCCTCTCTG 58.591 60.000 0.00 0.00 0.00 3.35
3309 3938 0.937441 TAGGTCCCTCTCTGCTGGAT 59.063 55.000 0.00 0.00 0.00 3.41
3310 3939 0.043940 AGGTCCCTCTCTGCTGGATT 59.956 55.000 0.00 0.00 0.00 3.01
3446 4087 5.710984 CACTCGAAGTACAGTGATACCTTT 58.289 41.667 5.36 0.00 42.37 3.11
3448 4089 5.068234 TCGAAGTACAGTGATACCTTTGG 57.932 43.478 0.00 0.00 0.00 3.28
3449 4090 4.525487 TCGAAGTACAGTGATACCTTTGGT 59.475 41.667 0.00 0.00 40.16 3.67
3456 4100 6.121776 ACAGTGATACCTTTGGTAATGACA 57.878 37.500 0.00 0.00 41.85 3.58
3464 4108 3.569701 CCTTTGGTAATGACACAGTTGCT 59.430 43.478 0.00 0.00 0.00 3.91
3477 4121 2.751259 ACAGTTGCTGCAGTGATTATGG 59.249 45.455 16.64 0.67 34.37 2.74
3478 4122 3.011818 CAGTTGCTGCAGTGATTATGGA 58.988 45.455 16.64 0.00 0.00 3.41
3508 4152 4.889832 CCAAGATATGGCAGTCTTTCAC 57.110 45.455 13.39 0.00 43.80 3.18
3511 4155 4.785346 AGATATGGCAGTCTTTCACCAT 57.215 40.909 0.00 0.00 44.88 3.55
3527 4184 8.676401 TCTTTCACCATACATACATGTTTCATG 58.324 33.333 2.30 4.43 41.97 3.07
3575 4259 3.152341 CAAACTCTTGGAGGATGCTGTT 58.848 45.455 0.00 0.00 33.35 3.16
3596 4280 4.188247 TGGTGCTAGTACTAGTGCTTTG 57.812 45.455 26.76 12.87 35.65 2.77
3665 4349 7.169982 GTGTATGATAACTTGTCCATCACTAGC 59.830 40.741 0.00 0.00 31.83 3.42
3770 6036 2.193248 GTCCCCCATGGCACTAGC 59.807 66.667 6.09 0.00 41.10 3.42
3772 6038 3.479203 CCCCCATGGCACTAGCGA 61.479 66.667 6.09 0.00 43.41 4.93
3773 6039 2.109799 CCCCATGGCACTAGCGAG 59.890 66.667 6.09 0.00 43.41 5.03
3774 6040 2.109799 CCCATGGCACTAGCGAGG 59.890 66.667 6.09 0.00 43.41 4.63
3775 6041 2.434843 CCCATGGCACTAGCGAGGA 61.435 63.158 6.09 0.00 43.41 3.71
3776 6042 1.227380 CCATGGCACTAGCGAGGAC 60.227 63.158 0.00 0.00 43.41 3.85
3777 6043 1.227380 CATGGCACTAGCGAGGACC 60.227 63.158 0.00 0.00 43.41 4.46
3778 6044 1.381872 ATGGCACTAGCGAGGACCT 60.382 57.895 0.00 0.00 43.41 3.85
3779 6045 0.978146 ATGGCACTAGCGAGGACCTT 60.978 55.000 0.00 0.76 43.41 3.50
3780 6046 1.153549 GGCACTAGCGAGGACCTTG 60.154 63.158 4.10 4.10 43.41 3.61
3781 6047 1.153549 GCACTAGCGAGGACCTTGG 60.154 63.158 10.94 0.00 0.00 3.61
3782 6048 1.153549 CACTAGCGAGGACCTTGGC 60.154 63.158 10.94 10.31 0.00 4.52
3783 6049 2.105128 CTAGCGAGGACCTTGGCG 59.895 66.667 10.94 3.78 0.00 5.69
3784 6050 2.361992 TAGCGAGGACCTTGGCGA 60.362 61.111 10.94 4.20 0.00 5.54
3814 6080 5.278022 GCTTTCGGGATCTGGAAACATTATC 60.278 44.000 7.38 0.00 41.51 1.75
3832 6098 2.415608 CGGCGTCCAAGCTCCTCTA 61.416 63.158 0.00 0.00 37.29 2.43
3880 6146 9.650371 GCAAGTTGAAAAAGGTTATTTGAATTC 57.350 29.630 7.16 0.00 0.00 2.17
3942 6211 1.523938 GTGCTCCCCTTCGCCATAC 60.524 63.158 0.00 0.00 0.00 2.39
3968 6273 6.040054 GGACAAAACACACCTTGTATTACCTT 59.960 38.462 0.00 0.00 37.51 3.50
4069 6401 8.355913 GCAGAATAAAATTCTAGAATTCCCCAG 58.644 37.037 26.83 15.91 39.88 4.45
4071 6403 9.997172 AGAATAAAATTCTAGAATTCCCCAGTT 57.003 29.630 26.83 19.03 39.88 3.16
4140 6472 2.299297 GGGCGTAGTATATCTGCACCTT 59.701 50.000 0.00 0.00 32.76 3.50
4142 6474 4.483311 GGCGTAGTATATCTGCACCTTAC 58.517 47.826 0.00 0.00 30.19 2.34
4145 6477 5.278858 GCGTAGTATATCTGCACCTTACCTT 60.279 44.000 0.00 0.00 0.00 3.50
4322 6658 3.572584 GACCCACTCGTTGTACTACAAG 58.427 50.000 8.18 1.06 39.00 3.16
4371 6711 5.331876 ACTCTGGTGAGCTTTACATCTAC 57.668 43.478 0.00 0.00 43.85 2.59
4405 6755 6.132791 ACGTATGTTCCTCAGTATGTACAG 57.867 41.667 0.33 0.00 37.40 2.74
4418 6768 7.941919 TCAGTATGTACAGTCTGCTAATAAGG 58.058 38.462 19.06 0.92 37.40 2.69
4420 6770 7.863375 CAGTATGTACAGTCTGCTAATAAGGTC 59.137 40.741 14.24 0.00 0.00 3.85
4433 6786 5.181245 GCTAATAAGGTCTTTGTGCTGAACA 59.819 40.000 0.00 0.00 36.85 3.18
4439 6792 3.798337 GGTCTTTGTGCTGAACATTGTTG 59.202 43.478 6.80 0.00 38.99 3.33
4444 6801 3.213506 TGTGCTGAACATTGTTGCTACT 58.786 40.909 6.80 0.00 32.36 2.57
4445 6802 3.250762 TGTGCTGAACATTGTTGCTACTC 59.749 43.478 6.80 0.00 32.36 2.59
4446 6803 3.499918 GTGCTGAACATTGTTGCTACTCT 59.500 43.478 6.80 0.00 0.00 3.24
4447 6804 4.023707 GTGCTGAACATTGTTGCTACTCTT 60.024 41.667 6.80 0.00 0.00 2.85
4449 6806 5.067674 TGCTGAACATTGTTGCTACTCTTTT 59.932 36.000 6.80 0.00 0.00 2.27
4456 6813 8.634475 ACATTGTTGCTACTCTTTTTCTTTTC 57.366 30.769 0.00 0.00 0.00 2.29
4458 6815 9.950680 CATTGTTGCTACTCTTTTTCTTTTCTA 57.049 29.630 0.00 0.00 0.00 2.10
4459 6816 9.952188 ATTGTTGCTACTCTTTTTCTTTTCTAC 57.048 29.630 0.00 0.00 0.00 2.59
4461 6818 9.120538 TGTTGCTACTCTTTTTCTTTTCTACAT 57.879 29.630 0.00 0.00 0.00 2.29
4509 6878 7.591006 AAGTAGTACGTGTGGTTAATCATTG 57.409 36.000 0.00 0.00 0.00 2.82
4513 6882 8.965172 GTAGTACGTGTGGTTAATCATTGATAG 58.035 37.037 0.00 0.00 0.00 2.08
4517 6886 6.138088 CGTGTGGTTAATCATTGATAGCATG 58.862 40.000 0.00 0.00 0.00 4.06
4555 6968 3.372206 GCAGGTAATATGCATGATCGTCC 59.628 47.826 10.16 4.56 43.31 4.79
4556 6969 4.568956 CAGGTAATATGCATGATCGTCCA 58.431 43.478 10.16 0.00 0.00 4.02
4557 6970 4.996758 CAGGTAATATGCATGATCGTCCAA 59.003 41.667 10.16 0.00 0.00 3.53
4560 6973 4.818534 AATATGCATGATCGTCCAACAC 57.181 40.909 10.16 0.00 0.00 3.32
4583 6996 3.132289 GCAGTGCTACCTCCTACATAACA 59.868 47.826 8.18 0.00 0.00 2.41
4596 7009 5.248477 TCCTACATAACAGAAGCTTTCCTGT 59.752 40.000 13.55 13.55 44.69 4.00
4601 7014 0.514691 CAGAAGCTTTCCTGTCGTGC 59.485 55.000 0.00 0.00 0.00 5.34
4618 7035 2.358615 CGTGTGCTGCTTGCCCTA 60.359 61.111 0.00 0.00 42.00 3.53
4673 7095 1.265095 CATATGCATCGCCTTGGTGTC 59.735 52.381 0.19 0.00 0.00 3.67
4710 7142 5.122711 CCAGTTTGATTTGATTGGATTTGGC 59.877 40.000 0.00 0.00 0.00 4.52
4711 7143 5.701750 CAGTTTGATTTGATTGGATTTGGCA 59.298 36.000 0.00 0.00 0.00 4.92
4811 7437 2.224606 CCTGAGTGCTCATGTTGTTGT 58.775 47.619 2.06 0.00 39.13 3.32
4845 7471 0.106769 TGTGTGGTGGTGCTTGTCAT 60.107 50.000 0.00 0.00 0.00 3.06
4861 7487 4.529109 TGTCATGGTACGAATTGTCAGA 57.471 40.909 0.00 0.00 0.00 3.27
4863 7490 4.869861 TGTCATGGTACGAATTGTCAGATG 59.130 41.667 0.00 0.00 0.00 2.90
4868 7495 4.081142 TGGTACGAATTGTCAGATGTGGAT 60.081 41.667 0.00 0.00 0.00 3.41
4901 7528 4.811555 TGTAAGCATAAACGATGATGGC 57.188 40.909 0.00 0.00 37.82 4.40
4940 7581 7.437862 GTGGTGTTGTTTGTTGTGATATGATTT 59.562 33.333 0.00 0.00 0.00 2.17
4951 7594 9.671279 TGTTGTGATATGATTTGAATACTCAGT 57.329 29.630 0.00 0.00 31.69 3.41
4981 7654 4.187694 TGTTTGTTCCAATGCCAGTTTTC 58.812 39.130 0.00 0.00 0.00 2.29
5002 7676 7.425577 TTTCTATATGCTCATTGTTCCATCG 57.574 36.000 0.00 0.00 0.00 3.84
5013 7687 3.313012 TGTTCCATCGTGTACTTGGAG 57.687 47.619 0.00 0.00 40.48 3.86
5015 7689 3.070446 TGTTCCATCGTGTACTTGGAGTT 59.930 43.478 0.00 0.00 40.48 3.01
5022 7696 3.319689 TCGTGTACTTGGAGTTGATGTGA 59.680 43.478 0.00 0.00 0.00 3.58
5024 7698 4.091945 CGTGTACTTGGAGTTGATGTGATG 59.908 45.833 0.00 0.00 0.00 3.07
5043 7717 1.140852 TGGCTGTTGTCACTTGCTAGT 59.859 47.619 0.00 0.00 34.00 2.57
5078 7752 5.669798 ATTTCCTTTGCCCATATAGAGGT 57.330 39.130 0.00 0.00 0.00 3.85
5079 7753 6.780198 ATTTCCTTTGCCCATATAGAGGTA 57.220 37.500 0.00 0.00 0.00 3.08
5080 7754 6.780198 TTTCCTTTGCCCATATAGAGGTAT 57.220 37.500 0.00 0.00 0.00 2.73
5081 7755 5.762179 TCCTTTGCCCATATAGAGGTATG 57.238 43.478 0.00 0.00 32.95 2.39
5086 7760 8.204836 CCTTTGCCCATATAGAGGTATGTATAC 58.795 40.741 0.00 0.00 31.55 1.47
5192 9306 7.654022 TTACAGGGTTTCTCTGAATTTGTTT 57.346 32.000 3.53 0.00 36.22 2.83
5213 9328 5.638530 TTTTTCCCTTGGCATTTAGGTTT 57.361 34.783 3.17 0.00 0.00 3.27
5231 9346 5.016831 AGGTTTCCCTTTAAGTTAGCCATG 58.983 41.667 0.00 0.00 38.13 3.66
5241 9358 9.520204 CCTTTAAGTTAGCCATGTGAAATAATG 57.480 33.333 0.00 0.00 0.00 1.90
5245 9371 7.281040 AGTTAGCCATGTGAAATAATGATGG 57.719 36.000 0.00 0.00 37.27 3.51
5248 9374 5.452255 AGCCATGTGAAATAATGATGGAGT 58.548 37.500 0.00 0.00 36.45 3.85
5253 9379 7.655732 CCATGTGAAATAATGATGGAGTACGTA 59.344 37.037 0.00 0.00 36.45 3.57
5260 9386 7.962964 ATAATGATGGAGTACGTACCATTTG 57.037 36.000 23.16 0.00 45.41 2.32
5307 9433 7.922382 AGGTCTAGATCAAATCAAGAGGAAAA 58.078 34.615 5.64 0.00 0.00 2.29
5341 9491 0.037232 GGACGTCTGGAGTTTCCTGG 60.037 60.000 16.46 0.00 37.46 4.45
5367 9517 1.379044 CCGGCCTTTCTGATGCCTT 60.379 57.895 0.00 0.00 43.12 4.35
5368 9518 0.967380 CCGGCCTTTCTGATGCCTTT 60.967 55.000 0.00 0.00 43.12 3.11
5385 9535 7.285401 TGATGCCTTTAGTTTCTGAATAATCCC 59.715 37.037 0.00 0.00 0.00 3.85
5386 9536 6.489603 TGCCTTTAGTTTCTGAATAATCCCA 58.510 36.000 0.00 0.00 0.00 4.37
5393 9543 7.020827 AGTTTCTGAATAATCCCACTTCTCA 57.979 36.000 0.00 0.00 0.00 3.27
5413 9570 7.125792 TCTCACTTCTTCTTCAGTTAACCTT 57.874 36.000 0.88 0.00 0.00 3.50
5438 9595 3.845259 GACATCGCCGCCACCCTA 61.845 66.667 0.00 0.00 0.00 3.53
5472 9629 4.319549 CCGTTTCTGGCTTCTTCAGTTAAC 60.320 45.833 0.00 0.00 34.15 2.01
5473 9630 4.319549 CGTTTCTGGCTTCTTCAGTTAACC 60.320 45.833 0.88 0.00 34.15 2.85
5474 9631 4.706842 TTCTGGCTTCTTCAGTTAACCT 57.293 40.909 0.88 0.00 34.15 3.50
5481 9638 4.636249 CTTCTTCAGTTAACCTGCAGTCT 58.364 43.478 13.81 1.12 41.25 3.24
5482 9639 4.258702 TCTTCAGTTAACCTGCAGTCTC 57.741 45.455 13.81 0.00 41.25 3.36
5497 9654 3.338249 CAGTCTCCATTTCACCATCGTT 58.662 45.455 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.800438 CAGCGCTATTTACTAGATATGCGAA 59.200 40.000 10.99 0.00 44.02 4.70
2 3 5.332707 TCAGCGCTATTTACTAGATATGCG 58.667 41.667 10.99 6.03 44.10 4.73
3 4 7.915923 TGTATCAGCGCTATTTACTAGATATGC 59.084 37.037 10.99 0.58 0.00 3.14
4 5 9.958234 ATGTATCAGCGCTATTTACTAGATATG 57.042 33.333 10.99 0.00 0.00 1.78
8 9 9.011095 ACTAATGTATCAGCGCTATTTACTAGA 57.989 33.333 10.99 0.00 0.00 2.43
9 10 9.627395 AACTAATGTATCAGCGCTATTTACTAG 57.373 33.333 10.99 12.43 0.00 2.57
10 11 9.622004 GAACTAATGTATCAGCGCTATTTACTA 57.378 33.333 10.99 4.24 0.00 1.82
11 12 8.361139 AGAACTAATGTATCAGCGCTATTTACT 58.639 33.333 10.99 0.46 0.00 2.24
12 13 8.522178 AGAACTAATGTATCAGCGCTATTTAC 57.478 34.615 10.99 12.80 0.00 2.01
14 15 9.542462 TTAAGAACTAATGTATCAGCGCTATTT 57.458 29.630 10.99 0.00 0.00 1.40
15 16 9.542462 TTTAAGAACTAATGTATCAGCGCTATT 57.458 29.630 10.99 8.77 0.00 1.73
16 17 9.712305 ATTTAAGAACTAATGTATCAGCGCTAT 57.288 29.630 10.99 7.11 0.00 2.97
18 19 9.712305 ATATTTAAGAACTAATGTATCAGCGCT 57.288 29.630 2.64 2.64 0.00 5.92
29 30 9.712359 GGAACGCGAAAATATTTAAGAACTAAT 57.288 29.630 15.93 0.00 0.00 1.73
30 31 8.938906 AGGAACGCGAAAATATTTAAGAACTAA 58.061 29.630 15.93 0.00 0.00 2.24
31 32 8.483307 AGGAACGCGAAAATATTTAAGAACTA 57.517 30.769 15.93 0.00 0.00 2.24
32 33 7.373778 AGGAACGCGAAAATATTTAAGAACT 57.626 32.000 15.93 0.00 0.00 3.01
33 34 7.461026 GCAAGGAACGCGAAAATATTTAAGAAC 60.461 37.037 15.93 0.00 0.00 3.01
34 35 6.525280 GCAAGGAACGCGAAAATATTTAAGAA 59.475 34.615 15.93 0.00 0.00 2.52
35 36 6.025280 GCAAGGAACGCGAAAATATTTAAGA 58.975 36.000 15.93 0.00 0.00 2.10
36 37 5.797934 TGCAAGGAACGCGAAAATATTTAAG 59.202 36.000 15.93 0.04 0.00 1.85
37 38 5.700846 TGCAAGGAACGCGAAAATATTTAA 58.299 33.333 15.93 0.00 0.00 1.52
38 39 5.106475 ACTGCAAGGAACGCGAAAATATTTA 60.106 36.000 15.93 0.00 39.30 1.40
39 40 4.165779 CTGCAAGGAACGCGAAAATATTT 58.834 39.130 15.93 0.00 0.00 1.40
40 41 3.190535 ACTGCAAGGAACGCGAAAATATT 59.809 39.130 15.93 0.00 39.30 1.28
41 42 2.747446 ACTGCAAGGAACGCGAAAATAT 59.253 40.909 15.93 0.00 39.30 1.28
42 43 2.147958 ACTGCAAGGAACGCGAAAATA 58.852 42.857 15.93 0.00 39.30 1.40
43 44 0.951558 ACTGCAAGGAACGCGAAAAT 59.048 45.000 15.93 0.00 39.30 1.82
44 45 0.306533 GACTGCAAGGAACGCGAAAA 59.693 50.000 15.93 0.00 39.30 2.29
45 46 0.812014 TGACTGCAAGGAACGCGAAA 60.812 50.000 15.93 0.00 39.30 3.46
46 47 1.227409 TGACTGCAAGGAACGCGAA 60.227 52.632 15.93 0.00 39.30 4.70
47 48 1.954146 GTGACTGCAAGGAACGCGA 60.954 57.895 15.93 0.00 39.30 5.87
48 49 0.666274 TAGTGACTGCAAGGAACGCG 60.666 55.000 3.53 3.53 39.30 6.01
49 50 1.071605 CTAGTGACTGCAAGGAACGC 58.928 55.000 0.00 0.00 39.30 4.84
50 51 2.061773 CACTAGTGACTGCAAGGAACG 58.938 52.381 18.45 0.00 39.30 3.95
51 52 1.801178 GCACTAGTGACTGCAAGGAAC 59.199 52.381 27.08 0.00 39.30 3.62
52 53 1.694150 AGCACTAGTGACTGCAAGGAA 59.306 47.619 27.08 0.00 39.30 3.36
53 54 1.342074 AGCACTAGTGACTGCAAGGA 58.658 50.000 27.08 0.00 39.30 3.36
54 55 1.802960 CAAGCACTAGTGACTGCAAGG 59.197 52.381 27.08 7.61 39.30 3.61
55 56 1.196354 GCAAGCACTAGTGACTGCAAG 59.804 52.381 30.01 17.40 38.65 4.01
56 57 1.229428 GCAAGCACTAGTGACTGCAA 58.771 50.000 30.01 0.00 38.65 4.08
57 58 0.603707 GGCAAGCACTAGTGACTGCA 60.604 55.000 32.94 0.00 39.76 4.41
58 59 1.630244 CGGCAAGCACTAGTGACTGC 61.630 60.000 28.39 28.39 38.31 4.40
59 60 1.016130 CCGGCAAGCACTAGTGACTG 61.016 60.000 27.08 20.85 0.00 3.51
60 61 1.293498 CCGGCAAGCACTAGTGACT 59.707 57.895 27.08 18.75 0.00 3.41
61 62 0.602905 AACCGGCAAGCACTAGTGAC 60.603 55.000 27.08 16.83 0.00 3.67
62 63 0.602638 CAACCGGCAAGCACTAGTGA 60.603 55.000 27.08 0.00 0.00 3.41
63 64 0.884704 ACAACCGGCAAGCACTAGTG 60.885 55.000 18.93 18.93 0.00 2.74
64 65 0.682852 TACAACCGGCAAGCACTAGT 59.317 50.000 0.00 0.00 0.00 2.57
65 66 1.337823 ACTACAACCGGCAAGCACTAG 60.338 52.381 0.00 0.00 0.00 2.57
66 67 0.682852 ACTACAACCGGCAAGCACTA 59.317 50.000 0.00 0.00 0.00 2.74
67 68 0.884704 CACTACAACCGGCAAGCACT 60.885 55.000 0.00 0.00 0.00 4.40
68 69 1.574428 CACTACAACCGGCAAGCAC 59.426 57.895 0.00 0.00 0.00 4.40
69 70 1.599518 CCACTACAACCGGCAAGCA 60.600 57.895 0.00 0.00 0.00 3.91
70 71 1.170290 AACCACTACAACCGGCAAGC 61.170 55.000 0.00 0.00 0.00 4.01
71 72 1.802365 GTAACCACTACAACCGGCAAG 59.198 52.381 0.00 0.00 0.00 4.01
72 73 1.873069 CGTAACCACTACAACCGGCAA 60.873 52.381 0.00 0.00 0.00 4.52
73 74 0.319727 CGTAACCACTACAACCGGCA 60.320 55.000 0.00 0.00 0.00 5.69
74 75 1.629345 GCGTAACCACTACAACCGGC 61.629 60.000 0.00 0.00 0.00 6.13
75 76 0.319727 TGCGTAACCACTACAACCGG 60.320 55.000 0.00 0.00 0.00 5.28
76 77 1.500108 TTGCGTAACCACTACAACCG 58.500 50.000 0.00 0.00 0.00 4.44
77 78 2.613133 TGTTTGCGTAACCACTACAACC 59.387 45.455 0.00 0.00 35.81 3.77
78 79 3.310501 ACTGTTTGCGTAACCACTACAAC 59.689 43.478 0.00 0.00 35.81 3.32
79 80 3.533547 ACTGTTTGCGTAACCACTACAA 58.466 40.909 0.00 0.00 35.81 2.41
80 81 3.182341 ACTGTTTGCGTAACCACTACA 57.818 42.857 0.00 0.00 35.81 2.74
81 82 3.805971 AGAACTGTTTGCGTAACCACTAC 59.194 43.478 0.00 0.00 35.81 2.73
82 83 4.062677 AGAACTGTTTGCGTAACCACTA 57.937 40.909 0.00 0.00 35.81 2.74
83 84 2.914059 AGAACTGTTTGCGTAACCACT 58.086 42.857 0.00 0.00 35.81 4.00
84 85 3.181504 ACAAGAACTGTTTGCGTAACCAC 60.182 43.478 0.00 0.00 32.99 4.16
85 86 3.011119 ACAAGAACTGTTTGCGTAACCA 58.989 40.909 0.00 0.00 32.99 3.67
86 87 3.181504 ACACAAGAACTGTTTGCGTAACC 60.182 43.478 0.00 0.00 35.47 2.85
87 88 4.011058 ACACAAGAACTGTTTGCGTAAC 57.989 40.909 0.00 0.00 35.47 2.50
88 89 4.393680 AGAACACAAGAACTGTTTGCGTAA 59.606 37.500 0.00 0.00 35.47 3.18
89 90 3.936453 AGAACACAAGAACTGTTTGCGTA 59.064 39.130 0.00 0.00 35.47 4.42
90 91 2.747446 AGAACACAAGAACTGTTTGCGT 59.253 40.909 0.00 0.00 35.47 5.24
91 92 3.405170 AGAACACAAGAACTGTTTGCG 57.595 42.857 0.00 0.00 35.47 4.85
92 93 3.304293 GCAAGAACACAAGAACTGTTTGC 59.696 43.478 0.00 0.00 39.55 3.68
93 94 3.859386 GGCAAGAACACAAGAACTGTTTG 59.141 43.478 0.00 0.00 35.47 2.93
94 95 3.427503 CGGCAAGAACACAAGAACTGTTT 60.428 43.478 0.00 0.00 35.47 2.83
95 96 2.097466 CGGCAAGAACACAAGAACTGTT 59.903 45.455 0.00 0.00 35.47 3.16
96 97 1.670811 CGGCAAGAACACAAGAACTGT 59.329 47.619 0.00 0.00 39.56 3.55
97 98 1.002468 CCGGCAAGAACACAAGAACTG 60.002 52.381 0.00 0.00 0.00 3.16
98 99 1.308998 CCGGCAAGAACACAAGAACT 58.691 50.000 0.00 0.00 0.00 3.01
99 100 1.021968 ACCGGCAAGAACACAAGAAC 58.978 50.000 0.00 0.00 0.00 3.01
100 101 1.403679 CAACCGGCAAGAACACAAGAA 59.596 47.619 0.00 0.00 0.00 2.52
101 102 1.021202 CAACCGGCAAGAACACAAGA 58.979 50.000 0.00 0.00 0.00 3.02
102 103 0.738389 ACAACCGGCAAGAACACAAG 59.262 50.000 0.00 0.00 0.00 3.16
103 104 1.944024 CTACAACCGGCAAGAACACAA 59.056 47.619 0.00 0.00 0.00 3.33
104 105 1.139256 TCTACAACCGGCAAGAACACA 59.861 47.619 0.00 0.00 0.00 3.72
105 106 1.798813 CTCTACAACCGGCAAGAACAC 59.201 52.381 0.00 0.00 0.00 3.32
106 107 1.689813 TCTCTACAACCGGCAAGAACA 59.310 47.619 0.00 0.00 0.00 3.18
107 108 2.450609 TCTCTACAACCGGCAAGAAC 57.549 50.000 0.00 0.00 0.00 3.01
108 109 3.695830 AATCTCTACAACCGGCAAGAA 57.304 42.857 0.00 0.00 0.00 2.52
109 110 3.007506 TGAAATCTCTACAACCGGCAAGA 59.992 43.478 0.00 0.00 0.00 3.02
110 111 3.334691 TGAAATCTCTACAACCGGCAAG 58.665 45.455 0.00 0.00 0.00 4.01
111 112 3.410631 TGAAATCTCTACAACCGGCAA 57.589 42.857 0.00 0.00 0.00 4.52
112 113 3.627395 ATGAAATCTCTACAACCGGCA 57.373 42.857 0.00 0.00 0.00 5.69
113 114 5.006746 CAGTTATGAAATCTCTACAACCGGC 59.993 44.000 0.00 0.00 0.00 6.13
114 115 6.338146 TCAGTTATGAAATCTCTACAACCGG 58.662 40.000 0.00 0.00 30.61 5.28
115 116 8.425577 AATCAGTTATGAAATCTCTACAACCG 57.574 34.615 0.00 0.00 39.39 4.44
131 132 9.530633 GGAACTCATCGTACTTAAATCAGTTAT 57.469 33.333 0.00 0.00 0.00 1.89
132 133 7.977853 GGGAACTCATCGTACTTAAATCAGTTA 59.022 37.037 0.00 0.00 0.00 2.24
133 134 6.817140 GGGAACTCATCGTACTTAAATCAGTT 59.183 38.462 0.00 0.00 0.00 3.16
134 135 6.070995 TGGGAACTCATCGTACTTAAATCAGT 60.071 38.462 0.00 0.00 0.00 3.41
135 136 6.338146 TGGGAACTCATCGTACTTAAATCAG 58.662 40.000 0.00 0.00 0.00 2.90
136 137 6.288941 TGGGAACTCATCGTACTTAAATCA 57.711 37.500 0.00 0.00 0.00 2.57
137 138 7.787725 AATGGGAACTCATCGTACTTAAATC 57.212 36.000 0.00 0.00 0.00 2.17
138 139 8.575649 AAAATGGGAACTCATCGTACTTAAAT 57.424 30.769 0.00 0.00 0.00 1.40
139 140 7.989416 AAAATGGGAACTCATCGTACTTAAA 57.011 32.000 0.00 0.00 0.00 1.52
140 141 7.989416 AAAAATGGGAACTCATCGTACTTAA 57.011 32.000 0.00 0.00 0.00 1.85
162 163 7.404671 AGGTTTAAGCTTGAAGTCAGAAAAA 57.595 32.000 9.86 0.00 0.00 1.94
163 164 7.404671 AAGGTTTAAGCTTGAAGTCAGAAAA 57.595 32.000 9.86 0.00 34.21 2.29
164 165 6.238374 CGAAGGTTTAAGCTTGAAGTCAGAAA 60.238 38.462 14.37 0.00 35.86 2.52
165 166 5.236478 CGAAGGTTTAAGCTTGAAGTCAGAA 59.764 40.000 14.37 0.00 35.86 3.02
166 167 4.750098 CGAAGGTTTAAGCTTGAAGTCAGA 59.250 41.667 14.37 0.00 35.86 3.27
167 168 4.750098 TCGAAGGTTTAAGCTTGAAGTCAG 59.250 41.667 14.37 0.00 35.86 3.51
168 169 4.699637 TCGAAGGTTTAAGCTTGAAGTCA 58.300 39.130 14.37 0.00 35.86 3.41
169 170 5.408604 TGATCGAAGGTTTAAGCTTGAAGTC 59.591 40.000 14.37 7.46 35.86 3.01
170 171 5.305585 TGATCGAAGGTTTAAGCTTGAAGT 58.694 37.500 14.37 0.00 35.86 3.01
171 172 5.862924 TGATCGAAGGTTTAAGCTTGAAG 57.137 39.130 14.37 5.83 35.86 3.02
172 173 6.206634 ACATTGATCGAAGGTTTAAGCTTGAA 59.793 34.615 14.37 3.95 35.86 2.69
173 174 5.705441 ACATTGATCGAAGGTTTAAGCTTGA 59.295 36.000 14.37 11.65 35.86 3.02
174 175 5.942872 ACATTGATCGAAGGTTTAAGCTTG 58.057 37.500 14.37 7.00 35.86 4.01
175 176 7.552687 TCATACATTGATCGAAGGTTTAAGCTT 59.447 33.333 9.27 9.27 38.85 3.74
176 177 7.047891 TCATACATTGATCGAAGGTTTAAGCT 58.952 34.615 0.00 0.00 29.54 3.74
177 178 7.246674 TCATACATTGATCGAAGGTTTAAGC 57.753 36.000 0.00 0.00 29.54 3.09
178 179 7.852945 GCTTCATACATTGATCGAAGGTTTAAG 59.147 37.037 0.00 6.66 34.88 1.85
179 180 7.335673 TGCTTCATACATTGATCGAAGGTTTAA 59.664 33.333 0.00 0.00 34.88 1.52
180 181 6.821160 TGCTTCATACATTGATCGAAGGTTTA 59.179 34.615 0.00 0.00 34.88 2.01
181 182 5.647658 TGCTTCATACATTGATCGAAGGTTT 59.352 36.000 0.00 0.00 34.88 3.27
182 183 5.185454 TGCTTCATACATTGATCGAAGGTT 58.815 37.500 0.00 0.00 34.88 3.50
183 184 4.769688 TGCTTCATACATTGATCGAAGGT 58.230 39.130 0.00 4.21 34.88 3.50
184 185 5.936686 ATGCTTCATACATTGATCGAAGG 57.063 39.130 0.00 0.00 34.88 3.46
185 186 8.127327 AGAAAATGCTTCATACATTGATCGAAG 58.873 33.333 0.00 0.00 37.78 3.79
186 187 7.911727 CAGAAAATGCTTCATACATTGATCGAA 59.088 33.333 0.00 0.00 37.78 3.71
187 188 7.280652 TCAGAAAATGCTTCATACATTGATCGA 59.719 33.333 0.00 0.00 37.78 3.59
188 189 7.412063 TCAGAAAATGCTTCATACATTGATCG 58.588 34.615 0.00 0.00 37.78 3.69
189 190 9.745880 AATCAGAAAATGCTTCATACATTGATC 57.254 29.630 0.00 0.00 37.78 2.92
191 192 9.577110 GAAATCAGAAAATGCTTCATACATTGA 57.423 29.630 0.00 0.00 37.78 2.57
192 193 9.582431 AGAAATCAGAAAATGCTTCATACATTG 57.418 29.630 0.00 0.00 37.78 2.82
193 194 9.582431 CAGAAATCAGAAAATGCTTCATACATT 57.418 29.630 0.00 0.00 39.38 2.71
194 195 8.746530 ACAGAAATCAGAAAATGCTTCATACAT 58.253 29.630 0.00 0.00 0.00 2.29
195 196 8.114331 ACAGAAATCAGAAAATGCTTCATACA 57.886 30.769 0.00 0.00 0.00 2.29
196 197 9.713740 CTACAGAAATCAGAAAATGCTTCATAC 57.286 33.333 0.00 0.00 0.00 2.39
197 198 8.896744 CCTACAGAAATCAGAAAATGCTTCATA 58.103 33.333 0.00 0.00 0.00 2.15
198 199 7.613022 TCCTACAGAAATCAGAAAATGCTTCAT 59.387 33.333 0.00 0.00 0.00 2.57
199 200 6.942005 TCCTACAGAAATCAGAAAATGCTTCA 59.058 34.615 0.00 0.00 0.00 3.02
200 201 7.383102 TCCTACAGAAATCAGAAAATGCTTC 57.617 36.000 0.00 0.00 0.00 3.86
201 202 7.765695 TTCCTACAGAAATCAGAAAATGCTT 57.234 32.000 0.00 0.00 0.00 3.91
202 203 7.833183 AGATTCCTACAGAAATCAGAAAATGCT 59.167 33.333 0.00 0.00 38.21 3.79
203 204 7.914346 CAGATTCCTACAGAAATCAGAAAATGC 59.086 37.037 0.00 0.00 38.21 3.56
204 205 8.954350 ACAGATTCCTACAGAAATCAGAAAATG 58.046 33.333 0.00 0.00 38.21 2.32
205 206 8.954350 CACAGATTCCTACAGAAATCAGAAAAT 58.046 33.333 0.00 0.00 38.21 1.82
206 207 7.939039 ACACAGATTCCTACAGAAATCAGAAAA 59.061 33.333 0.00 0.00 38.21 2.29
207 208 7.453393 ACACAGATTCCTACAGAAATCAGAAA 58.547 34.615 0.00 0.00 38.21 2.52
208 209 7.009179 ACACAGATTCCTACAGAAATCAGAA 57.991 36.000 0.00 0.00 38.21 3.02
209 210 6.611613 ACACAGATTCCTACAGAAATCAGA 57.388 37.500 0.00 0.00 38.21 3.27
210 211 6.478344 GCTACACAGATTCCTACAGAAATCAG 59.522 42.308 0.00 0.00 38.21 2.90
211 212 6.070824 TGCTACACAGATTCCTACAGAAATCA 60.071 38.462 0.00 0.00 38.21 2.57
212 213 6.256757 GTGCTACACAGATTCCTACAGAAATC 59.743 42.308 0.00 0.00 34.49 2.17
213 214 6.109359 GTGCTACACAGATTCCTACAGAAAT 58.891 40.000 0.00 0.00 34.49 2.17
214 215 5.011635 TGTGCTACACAGATTCCTACAGAAA 59.988 40.000 0.00 0.00 39.62 2.52
215 216 4.526650 TGTGCTACACAGATTCCTACAGAA 59.473 41.667 0.00 0.00 39.62 3.02
216 217 4.086457 TGTGCTACACAGATTCCTACAGA 58.914 43.478 0.00 0.00 39.62 3.41
217 218 4.456280 TGTGCTACACAGATTCCTACAG 57.544 45.455 0.00 0.00 39.62 2.74
230 231 7.962441 TCCTAATTATAGCTTGATGTGCTACA 58.038 34.615 0.00 0.00 44.44 2.74
234 235 9.658799 TCTAATCCTAATTATAGCTTGATGTGC 57.341 33.333 0.00 0.00 0.00 4.57
250 251 3.380637 GTGGCTCGTGTCTCTAATCCTAA 59.619 47.826 0.00 0.00 0.00 2.69
252 253 1.751924 GTGGCTCGTGTCTCTAATCCT 59.248 52.381 0.00 0.00 0.00 3.24
253 254 1.476891 TGTGGCTCGTGTCTCTAATCC 59.523 52.381 0.00 0.00 0.00 3.01
259 260 0.247736 AGGAATGTGGCTCGTGTCTC 59.752 55.000 0.00 0.00 0.00 3.36
263 264 0.798776 GTTCAGGAATGTGGCTCGTG 59.201 55.000 0.00 0.00 0.00 4.35
265 266 1.742761 ATGTTCAGGAATGTGGCTCG 58.257 50.000 0.00 0.00 0.00 5.03
274 275 4.213270 CGTTCTGCAAGTTATGTTCAGGAA 59.787 41.667 0.00 0.00 33.76 3.36
308 310 6.952358 AGTAAGGTACAGTGACATTAGAAGGA 59.048 38.462 0.00 0.00 0.00 3.36
334 336 4.699735 TCGTCTAATGTTCATTGCCATTGT 59.300 37.500 8.11 0.00 33.54 2.71
358 360 9.712305 TCTTGCTACTAATTAATGGAATAGCTC 57.288 33.333 16.21 0.00 29.99 4.09
363 365 8.375506 TCCGATCTTGCTACTAATTAATGGAAT 58.624 33.333 0.00 0.00 0.00 3.01
372 374 5.133941 TCTCTGTCCGATCTTGCTACTAAT 58.866 41.667 0.00 0.00 0.00 1.73
388 391 0.389166 CACGGCTTGTCCTCTCTGTC 60.389 60.000 0.00 0.00 0.00 3.51
392 395 0.674895 AATGCACGGCTTGTCCTCTC 60.675 55.000 0.00 0.00 0.00 3.20
393 396 0.674895 GAATGCACGGCTTGTCCTCT 60.675 55.000 0.00 0.00 0.00 3.69
394 397 0.674895 AGAATGCACGGCTTGTCCTC 60.675 55.000 0.00 0.00 0.00 3.71
395 398 0.250901 AAGAATGCACGGCTTGTCCT 60.251 50.000 0.00 0.00 0.00 3.85
396 399 0.598065 AAAGAATGCACGGCTTGTCC 59.402 50.000 0.00 0.00 0.00 4.02
397 400 2.422276 AAAAGAATGCACGGCTTGTC 57.578 45.000 0.00 0.00 0.00 3.18
398 401 2.351738 GCTAAAAGAATGCACGGCTTGT 60.352 45.455 0.00 0.00 0.00 3.16
399 402 2.095059 AGCTAAAAGAATGCACGGCTTG 60.095 45.455 0.00 0.00 0.00 4.01
400 403 2.162681 AGCTAAAAGAATGCACGGCTT 58.837 42.857 0.00 0.00 0.00 4.35
401 404 1.826385 AGCTAAAAGAATGCACGGCT 58.174 45.000 0.00 0.00 0.00 5.52
405 408 8.970691 TTGAAGATAAAGCTAAAAGAATGCAC 57.029 30.769 0.00 0.00 0.00 4.57
438 441 2.589159 GCTTGTAGCCGGCTAGCC 60.589 66.667 36.09 24.89 34.48 3.93
446 449 3.764885 ATCAATTCGTTGCTTGTAGCC 57.235 42.857 0.00 0.00 41.51 3.93
458 461 8.464770 TTTTGCTAAAGATGGAAATCAATTCG 57.535 30.769 0.00 0.00 39.05 3.34
492 495 7.976135 TCTTTCTCTTTTCTTGAGAGGATTG 57.024 36.000 1.71 0.00 40.99 2.67
546 550 9.220767 CCTTAGACAGAATAAAAGCAAAGTAGT 57.779 33.333 0.00 0.00 0.00 2.73
547 551 9.220767 ACCTTAGACAGAATAAAAGCAAAGTAG 57.779 33.333 0.00 0.00 0.00 2.57
657 667 3.194116 TGACAGTACGGGATAACCAGAAC 59.806 47.826 0.00 0.00 40.22 3.01
660 670 3.637229 AGATGACAGTACGGGATAACCAG 59.363 47.826 0.00 0.00 40.22 4.00
662 672 3.243771 CCAGATGACAGTACGGGATAACC 60.244 52.174 0.00 0.00 0.00 2.85
663 673 3.635373 TCCAGATGACAGTACGGGATAAC 59.365 47.826 0.00 0.00 0.00 1.89
664 674 3.635373 GTCCAGATGACAGTACGGGATAA 59.365 47.826 0.00 0.00 43.85 1.75
665 675 3.220110 GTCCAGATGACAGTACGGGATA 58.780 50.000 0.00 0.00 43.85 2.59
666 676 2.032620 GTCCAGATGACAGTACGGGAT 58.967 52.381 0.00 0.00 43.85 3.85
755 765 2.688958 GAGGTGAGATAGTTACGTGCCT 59.311 50.000 0.00 0.00 0.00 4.75
757 767 3.436496 GTGAGGTGAGATAGTTACGTGC 58.564 50.000 0.00 0.00 0.00 5.34
758 768 3.681855 CGTGAGGTGAGATAGTTACGTG 58.318 50.000 0.00 0.00 0.00 4.49
759 769 2.097142 GCGTGAGGTGAGATAGTTACGT 59.903 50.000 0.00 0.00 33.33 3.57
760 770 2.541178 GGCGTGAGGTGAGATAGTTACG 60.541 54.545 0.00 0.00 0.00 3.18
887 1298 4.991687 ACTCTCCAGATTTGTTTCTCGAAC 59.008 41.667 0.00 0.00 38.78 3.95
946 1357 5.532406 GCCACTAGATTAATTCCATTCAGCA 59.468 40.000 0.00 0.00 0.00 4.41
983 1394 6.567701 CGTGCGCATAATTAATTGGTAGGATT 60.568 38.462 15.91 0.00 0.00 3.01
1005 1424 4.390909 GGAAAGTGTAAACATACCTCCGTG 59.609 45.833 0.00 0.00 0.00 4.94
1045 1464 7.552687 TGGAATAAAGACGATAACAAGCAGAAT 59.447 33.333 0.00 0.00 0.00 2.40
1097 1516 8.060931 AGAGGAAATAAGAAGCCAGAAATTTC 57.939 34.615 10.33 10.33 34.25 2.17
1104 1523 6.624642 GCAAAGAAGAGGAAATAAGAAGCCAG 60.625 42.308 0.00 0.00 0.00 4.85
1117 1539 3.765511 CCCAATTGATGCAAAGAAGAGGA 59.234 43.478 7.12 0.00 0.00 3.71
1138 1560 7.555965 ACAAAATCTGAGCCAATAATTTACCC 58.444 34.615 0.00 0.00 0.00 3.69
1162 1591 7.642071 TTAACTAATGACAAACCTGACGTAC 57.358 36.000 0.00 0.00 0.00 3.67
1173 1602 8.720562 CATGGATATGCGATTAACTAATGACAA 58.279 33.333 0.00 0.00 0.00 3.18
1201 1630 5.471456 CCATTGATAACTTAGGCATGGAGAC 59.529 44.000 0.00 0.00 0.00 3.36
1220 1649 9.784531 ATGTAAGTAATATTCTCAGTCCCATTG 57.215 33.333 0.00 0.00 0.00 2.82
1292 1721 5.688814 TCTCAATCATGACTGAGAATGGT 57.311 39.130 29.37 0.00 43.90 3.55
1407 1845 9.333724 CTTGATAACCTGCATGCATATGATATA 57.666 33.333 22.97 8.21 36.36 0.86
1408 1846 7.284716 CCTTGATAACCTGCATGCATATGATAT 59.715 37.037 22.97 15.90 36.36 1.63
1409 1847 6.600427 CCTTGATAACCTGCATGCATATGATA 59.400 38.462 22.97 11.97 36.36 2.15
1410 1848 5.417894 CCTTGATAACCTGCATGCATATGAT 59.582 40.000 22.97 10.85 36.36 2.45
1411 1849 4.763279 CCTTGATAACCTGCATGCATATGA 59.237 41.667 22.97 7.86 36.36 2.15
1655 2111 1.134877 TGCTCTGCGATTTCTCTCTGG 60.135 52.381 0.00 0.00 0.00 3.86
1686 2142 4.320546 ACATCTTCATCACCCAATTGGA 57.679 40.909 26.60 6.42 37.39 3.53
1718 2174 4.765856 CCATTGAAATCATCCTCCTCATCC 59.234 45.833 0.00 0.00 0.00 3.51
1830 2286 4.151121 TCCTCATTGCTTCCATTGTGAAA 58.849 39.130 0.00 0.00 0.00 2.69
1865 2321 4.814771 GGGTATACCGAAAGACCAATTCTG 59.185 45.833 15.80 0.00 33.31 3.02
1869 2325 3.390819 AGGGGTATACCGAAAGACCAAT 58.609 45.455 15.80 0.00 41.60 3.16
1880 2336 5.376756 TGTTGGTCAAATAGGGGTATACC 57.623 43.478 13.99 13.99 39.11 2.73
1932 2388 1.985622 TTCATCTTGGGGTCCATCCT 58.014 50.000 0.00 0.00 36.25 3.24
2016 2481 4.725490 AGTAGATAGGACCAGAGCTCTTC 58.275 47.826 15.27 10.39 0.00 2.87
2039 2504 4.067896 CAACTTGTGTAGCCTCTTGATGT 58.932 43.478 0.00 0.00 0.00 3.06
2080 2563 2.668457 CACTCGACAACTATTGCAGGAC 59.332 50.000 0.00 0.00 0.00 3.85
2096 2579 5.008217 TCCCAACAAATACAAGAAACACTCG 59.992 40.000 0.00 0.00 0.00 4.18
2112 2595 3.192422 CGGATGCAATTTAGTCCCAACAA 59.808 43.478 0.00 0.00 0.00 2.83
2119 2602 0.317020 GCCGCGGATGCAATTTAGTC 60.317 55.000 33.48 1.16 42.97 2.59
2147 2636 3.878778 AGCCAAATCATACTCAGTGTCC 58.121 45.455 0.00 0.00 0.00 4.02
2199 2688 8.307483 ACTATCTGGGATTTTCTGTATGATACG 58.693 37.037 0.00 0.00 0.00 3.06
2201 2690 8.597167 CCACTATCTGGGATTTTCTGTATGATA 58.403 37.037 0.00 0.00 36.18 2.15
2224 2713 0.961019 TTGCCATGCTTCTTCACCAC 59.039 50.000 0.00 0.00 0.00 4.16
2229 2718 1.615392 ACCAACTTGCCATGCTTCTTC 59.385 47.619 0.00 0.00 0.00 2.87
2230 2719 1.615392 GACCAACTTGCCATGCTTCTT 59.385 47.619 0.00 0.00 0.00 2.52
2231 2720 1.251251 GACCAACTTGCCATGCTTCT 58.749 50.000 0.00 0.00 0.00 2.85
2250 2739 1.480137 GATCTCACCCTGGAGTGTCTG 59.520 57.143 12.89 7.06 38.91 3.51
2258 2747 1.680522 CCAGTCGGATCTCACCCTGG 61.681 65.000 0.00 0.00 34.71 4.45
2278 2770 6.683974 AATCATTCTGCTGGTAACACATAC 57.316 37.500 0.00 0.00 46.17 2.39
2279 2771 6.883756 TCAAATCATTCTGCTGGTAACACATA 59.116 34.615 0.00 0.00 46.17 2.29
2280 2772 5.711506 TCAAATCATTCTGCTGGTAACACAT 59.288 36.000 0.00 0.00 46.17 3.21
2281 2773 5.048782 GTCAAATCATTCTGCTGGTAACACA 60.049 40.000 0.00 0.00 46.17 3.72
2282 2774 5.393962 GTCAAATCATTCTGCTGGTAACAC 58.606 41.667 0.00 0.00 46.17 3.32
2284 2776 4.142381 GGGTCAAATCATTCTGCTGGTAAC 60.142 45.833 0.00 0.00 0.00 2.50
2286 2778 3.620488 GGGTCAAATCATTCTGCTGGTA 58.380 45.455 0.00 0.00 0.00 3.25
2289 2781 2.686915 GAGGGGTCAAATCATTCTGCTG 59.313 50.000 0.00 0.00 0.00 4.41
2291 2783 2.424956 GTGAGGGGTCAAATCATTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
2303 2816 1.004277 TGCATTACCAAGTGAGGGGTC 59.996 52.381 0.00 0.00 38.60 4.46
2304 2817 1.072266 TGCATTACCAAGTGAGGGGT 58.928 50.000 0.00 0.00 41.21 4.95
2307 2823 4.769688 TCAGTATGCATTACCAAGTGAGG 58.230 43.478 3.54 0.00 34.76 3.86
2322 2838 3.438087 CAGTGTGGCCTTTTCTCAGTATG 59.562 47.826 3.32 0.00 37.54 2.39
2333 2849 0.179018 GTGAAGTCCAGTGTGGCCTT 60.179 55.000 3.32 0.00 38.61 4.35
2335 2851 1.600916 GGTGAAGTCCAGTGTGGCC 60.601 63.158 0.00 0.00 37.47 5.36
2365 2884 0.907704 TCCAGCCGGAACCAGTACAT 60.908 55.000 5.05 0.00 38.83 2.29
2390 2909 9.613428 TCAATATGTTGAAACATTCTACTAGGG 57.387 33.333 13.53 0.00 46.95 3.53
2405 2924 3.119884 CGCCAAGCTTGTCAATATGTTGA 60.120 43.478 24.35 0.03 41.89 3.18
2458 2983 2.049767 CACCACATAAACGGGGGCC 61.050 63.158 0.00 0.00 0.00 5.80
2462 2987 1.880186 GTGGCACCACATAAACGGG 59.120 57.895 14.97 0.00 45.53 5.28
2465 2990 1.211709 GCCGTGGCACCACATAAAC 59.788 57.895 19.38 0.39 46.47 2.01
2469 2994 2.819984 CTAAGGCCGTGGCACCACAT 62.820 60.000 19.38 0.00 46.47 3.21
2471 2996 2.536997 ATCTAAGGCCGTGGCACCAC 62.537 60.000 12.86 9.88 44.11 4.16
2474 2999 0.733150 GAAATCTAAGGCCGTGGCAC 59.267 55.000 13.76 7.79 44.11 5.01
2517 3042 5.104402 TCCATTCTGCATCTGTGGATCTTAA 60.104 40.000 6.25 0.00 34.23 1.85
2520 3045 2.775960 TCCATTCTGCATCTGTGGATCT 59.224 45.455 6.25 0.00 34.23 2.75
2523 3048 1.211212 CCTCCATTCTGCATCTGTGGA 59.789 52.381 9.14 9.14 37.41 4.02
2538 3090 3.261897 GTGTCTTCCTCATCTTTCCTCCA 59.738 47.826 0.00 0.00 0.00 3.86
2544 3099 4.223923 CCTAGTGGTGTCTTCCTCATCTTT 59.776 45.833 0.00 0.00 0.00 2.52
2549 3104 2.696526 ACCTAGTGGTGTCTTCCTCA 57.303 50.000 0.00 0.00 46.51 3.86
2597 3152 1.339929 TCAGTGTAGCGCAAGTCAAGA 59.660 47.619 11.47 0.00 41.68 3.02
2696 3251 2.364632 CGTAAATGGCTCATGTCCCAA 58.635 47.619 10.34 0.00 34.25 4.12
2752 3307 4.480386 CTGAAGAAGCAAGTGGACTTTC 57.520 45.455 0.00 0.00 33.11 2.62
2798 3353 8.025445 CCTGAAAAATCAAGAAGTTCCATACTG 58.975 37.037 0.00 0.00 37.12 2.74
2801 3356 8.704849 TTCCTGAAAAATCAAGAAGTTCCATA 57.295 30.769 0.00 0.00 0.00 2.74
2912 3467 6.725834 AGCCCCTGAAAGAGATGATTTTTAAA 59.274 34.615 0.00 0.00 34.07 1.52
2930 3485 0.248289 CCAATTCTTTGCAGCCCCTG 59.752 55.000 0.00 0.00 34.12 4.45
3032 3593 0.615331 GTGATCTGGCTTCCACTCCA 59.385 55.000 0.00 0.00 0.00 3.86
3120 3684 2.159338 GCACATTGGGCAACTGATACTG 60.159 50.000 5.89 0.00 0.00 2.74
3123 3696 2.093890 CAGCACATTGGGCAACTGATA 58.906 47.619 14.41 0.00 0.00 2.15
3125 3698 1.808531 GCAGCACATTGGGCAACTGA 61.809 55.000 14.41 0.00 0.00 3.41
3126 3699 1.373748 GCAGCACATTGGGCAACTG 60.374 57.895 14.41 3.87 0.00 3.16
3214 3795 2.111384 TCTGCTGTTGGAGGGATAGAC 58.889 52.381 0.00 0.00 32.15 2.59
3263 3874 1.464608 CTTGCATCCGTGACACGAATT 59.535 47.619 28.83 10.22 46.05 2.17
3267 3878 3.027170 GCCTTGCATCCGTGACACG 62.027 63.158 21.02 21.02 42.11 4.49
3338 3967 0.821711 TACCACCAACAACAGCTGCC 60.822 55.000 15.27 0.00 0.00 4.85
3446 4087 1.879380 GCAGCAACTGTGTCATTACCA 59.121 47.619 0.00 0.00 33.43 3.25
3448 4089 2.549754 ACTGCAGCAACTGTGTCATTAC 59.450 45.455 15.27 0.00 33.43 1.89
3449 4090 2.549329 CACTGCAGCAACTGTGTCATTA 59.451 45.455 15.27 0.00 35.47 1.90
3456 4100 2.751259 CCATAATCACTGCAGCAACTGT 59.249 45.455 15.27 0.00 33.43 3.55
3464 4108 2.840038 ACAGTCCTCCATAATCACTGCA 59.160 45.455 0.00 0.00 38.44 4.41
3477 4121 2.224402 GCCATATCTTGGGACAGTCCTC 60.224 54.545 19.57 10.03 46.55 3.71
3478 4122 1.771255 GCCATATCTTGGGACAGTCCT 59.229 52.381 19.57 1.34 46.55 3.85
3508 4152 7.282901 TCACCTTCATGAAACATGTATGTATGG 59.717 37.037 9.88 4.92 40.80 2.74
3511 4155 8.046107 TCATCACCTTCATGAAACATGTATGTA 58.954 33.333 9.88 0.00 40.80 2.29
3527 4184 1.718757 GCCCGTGCATCATCACCTTC 61.719 60.000 0.00 0.00 37.47 3.46
3575 4259 3.576982 ACAAAGCACTAGTACTAGCACCA 59.423 43.478 26.54 0.00 36.66 4.17
3596 4280 6.542370 AGTCACATATACACTTGGGCAATAAC 59.458 38.462 0.00 0.00 0.00 1.89
3665 4349 1.619363 TTGGGGAGGTCCAGGGATG 60.619 63.158 0.00 0.00 38.17 3.51
3755 6021 3.466791 CTCGCTAGTGCCATGGGGG 62.467 68.421 15.13 4.72 40.85 5.40
3770 6036 3.068691 TCCTCGCCAAGGTCCTCG 61.069 66.667 0.00 0.00 46.32 4.63
3772 6038 2.203788 TGTCCTCGCCAAGGTCCT 60.204 61.111 0.01 0.00 46.32 3.85
3773 6039 2.266055 CTGTCCTCGCCAAGGTCC 59.734 66.667 0.01 0.00 46.32 4.46
3774 6040 2.435059 GCTGTCCTCGCCAAGGTC 60.435 66.667 0.01 0.00 46.32 3.85
3775 6041 2.056906 AAAGCTGTCCTCGCCAAGGT 62.057 55.000 0.00 0.00 46.32 3.50
3777 6043 1.630244 CGAAAGCTGTCCTCGCCAAG 61.630 60.000 0.00 0.00 0.00 3.61
3778 6044 1.667830 CGAAAGCTGTCCTCGCCAA 60.668 57.895 0.00 0.00 0.00 4.52
3779 6045 2.048222 CGAAAGCTGTCCTCGCCA 60.048 61.111 0.00 0.00 0.00 5.69
3780 6046 2.815647 CCGAAAGCTGTCCTCGCC 60.816 66.667 0.00 0.00 0.00 5.54
3781 6047 2.579684 ATCCCGAAAGCTGTCCTCGC 62.580 60.000 0.00 0.00 0.00 5.03
3782 6048 0.528684 GATCCCGAAAGCTGTCCTCG 60.529 60.000 0.00 0.00 0.00 4.63
3783 6049 0.827368 AGATCCCGAAAGCTGTCCTC 59.173 55.000 0.00 0.00 0.00 3.71
3784 6050 0.539051 CAGATCCCGAAAGCTGTCCT 59.461 55.000 0.00 0.00 0.00 3.85
3814 6080 1.739338 ATAGAGGAGCTTGGACGCCG 61.739 60.000 0.00 0.00 34.23 6.46
3832 6098 3.326006 CCTGTCCCAGATGTATAGTGCAT 59.674 47.826 0.00 0.00 32.44 3.96
3942 6211 4.561735 AATACAAGGTGTGTTTTGTCCG 57.438 40.909 0.00 0.00 41.98 4.79
3968 6273 4.950475 CAGTACACTATCTCAAGGGTCTCA 59.050 45.833 0.00 0.00 34.19 3.27
4017 6349 1.077858 GCTCAGGGCTCAAAGGGAG 60.078 63.158 0.00 0.00 46.93 4.30
4069 6401 0.109597 CAGGTGGATGCGCTTCAAAC 60.110 55.000 22.93 15.95 0.00 2.93
4071 6403 2.334946 GCAGGTGGATGCGCTTCAA 61.335 57.895 22.93 10.95 36.28 2.69
4127 6459 5.304614 GGTCTCAAGGTAAGGTGCAGATATA 59.695 44.000 0.00 0.00 0.00 0.86
4145 6477 1.186200 CCCTGATCTTGACGGTCTCA 58.814 55.000 9.88 3.83 0.00 3.27
4203 6535 4.077184 CTTGGGCGGCTCGGTGTA 62.077 66.667 9.56 0.00 0.00 2.90
4209 6541 4.785453 CTCCACCTTGGGCGGCTC 62.785 72.222 9.56 0.00 38.32 4.70
4226 6558 1.026718 CCCACCATTCCTTCTCGCAC 61.027 60.000 0.00 0.00 0.00 5.34
4371 6711 5.872617 TGAGGAACATACGTACAAATGGAAG 59.127 40.000 0.00 0.00 0.00 3.46
4405 6755 4.938226 AGCACAAAGACCTTATTAGCAGAC 59.062 41.667 0.00 0.00 0.00 3.51
4418 6768 3.243643 GCAACAATGTTCAGCACAAAGAC 59.756 43.478 0.00 0.00 39.50 3.01
4420 6770 3.450578 AGCAACAATGTTCAGCACAAAG 58.549 40.909 10.39 0.00 39.50 2.77
4433 6786 9.952188 GTAGAAAAGAAAAAGAGTAGCAACAAT 57.048 29.630 0.00 0.00 0.00 2.71
4449 6806 9.691362 GGCTGATTTGTTTTATGTAGAAAAGAA 57.309 29.630 0.00 0.00 31.77 2.52
4456 6813 9.601217 AGTACTAGGCTGATTTGTTTTATGTAG 57.399 33.333 0.00 0.00 0.00 2.74
4458 6815 7.883311 ACAGTACTAGGCTGATTTGTTTTATGT 59.117 33.333 19.20 0.00 37.40 2.29
4459 6816 8.268850 ACAGTACTAGGCTGATTTGTTTTATG 57.731 34.615 19.20 0.00 37.40 1.90
4461 6818 9.431887 CTTACAGTACTAGGCTGATTTGTTTTA 57.568 33.333 19.20 1.25 37.40 1.52
4463 6822 7.450903 ACTTACAGTACTAGGCTGATTTGTTT 58.549 34.615 19.20 2.58 37.40 2.83
4466 6825 7.773149 ACTACTTACAGTACTAGGCTGATTTG 58.227 38.462 19.20 10.58 37.40 2.32
4493 6862 5.733226 TGCTATCAATGATTAACCACACG 57.267 39.130 0.00 0.00 0.00 4.49
4513 6882 3.181477 TGCAGCATATAAACCAACCATGC 60.181 43.478 0.00 0.00 41.78 4.06
4517 6886 3.023832 ACCTGCAGCATATAAACCAACC 58.976 45.455 8.66 0.00 0.00 3.77
4555 6968 1.291877 GGAGGTAGCACTGCGTGTTG 61.292 60.000 9.76 0.00 35.75 3.33
4556 6969 1.004918 GGAGGTAGCACTGCGTGTT 60.005 57.895 9.76 6.85 35.75 3.32
4557 6970 0.611062 TAGGAGGTAGCACTGCGTGT 60.611 55.000 9.76 0.00 35.75 4.49
4560 6973 0.747255 ATGTAGGAGGTAGCACTGCG 59.253 55.000 0.00 0.00 33.63 5.18
4583 6996 0.946221 CGCACGACAGGAAAGCTTCT 60.946 55.000 0.00 0.00 0.00 2.85
4596 7009 3.639008 CAAGCAGCACACGCACGA 61.639 61.111 0.00 0.00 42.27 4.35
4618 7035 0.110486 ACACCAATCAAGCGGGAAGT 59.890 50.000 0.00 0.00 0.00 3.01
4811 7437 1.941975 CACACACACAGAATGAGCACA 59.058 47.619 0.00 0.00 39.69 4.57
4845 7471 3.259625 TCCACATCTGACAATTCGTACCA 59.740 43.478 0.00 0.00 0.00 3.25
4861 7487 8.147058 TGCTTACAAATTACAACAAATCCACAT 58.853 29.630 0.00 0.00 0.00 3.21
4863 7490 7.938563 TGCTTACAAATTACAACAAATCCAC 57.061 32.000 0.00 0.00 0.00 4.02
4868 7495 9.731819 TCGTTTATGCTTACAAATTACAACAAA 57.268 25.926 0.00 0.00 0.00 2.83
4901 7528 3.243035 ACAACACCACACACAAATCATCG 60.243 43.478 0.00 0.00 0.00 3.84
4940 7581 6.542005 ACAAACAACACATGACTGAGTATTCA 59.458 34.615 0.00 0.00 0.00 2.57
5002 7676 4.393062 CCATCACATCAACTCCAAGTACAC 59.607 45.833 0.00 0.00 0.00 2.90
5013 7687 2.553602 TGACAACAGCCATCACATCAAC 59.446 45.455 0.00 0.00 0.00 3.18
5015 7689 2.153645 GTGACAACAGCCATCACATCA 58.846 47.619 0.00 0.00 41.94 3.07
5022 7696 2.224621 ACTAGCAAGTGACAACAGCCAT 60.225 45.455 0.00 0.00 33.57 4.40
5024 7698 1.884235 ACTAGCAAGTGACAACAGCC 58.116 50.000 0.00 0.00 33.57 4.85
5043 7717 0.698238 AGGAAATACTGCCAGCCACA 59.302 50.000 0.00 0.00 0.00 4.17
5070 7744 8.842764 TGGACCTCATGTATACATACCTCTATA 58.157 37.037 17.86 0.09 34.26 1.31
5160 9274 7.786046 TCAGAGAAACCCTGTAATGTAACTA 57.214 36.000 0.00 0.00 33.57 2.24
5161 9275 6.681729 TCAGAGAAACCCTGTAATGTAACT 57.318 37.500 0.00 0.00 33.57 2.24
5162 9276 7.923414 ATTCAGAGAAACCCTGTAATGTAAC 57.077 36.000 0.00 0.00 33.57 2.50
5163 9277 8.792633 CAAATTCAGAGAAACCCTGTAATGTAA 58.207 33.333 0.00 0.00 33.57 2.41
5164 9278 7.942341 ACAAATTCAGAGAAACCCTGTAATGTA 59.058 33.333 0.00 0.00 33.57 2.29
5165 9279 6.777580 ACAAATTCAGAGAAACCCTGTAATGT 59.222 34.615 0.00 0.00 33.57 2.71
5166 9280 7.219484 ACAAATTCAGAGAAACCCTGTAATG 57.781 36.000 0.00 0.00 33.57 1.90
5167 9281 7.839680 AACAAATTCAGAGAAACCCTGTAAT 57.160 32.000 0.00 0.00 33.57 1.89
5192 9306 4.041075 GGAAACCTAAATGCCAAGGGAAAA 59.959 41.667 0.00 0.00 37.18 2.29
5195 9309 2.815158 GGAAACCTAAATGCCAAGGGA 58.185 47.619 0.00 0.00 37.18 4.20
5213 9328 4.919774 TCACATGGCTAACTTAAAGGGA 57.080 40.909 0.00 0.00 0.00 4.20
5231 9346 6.982141 TGGTACGTACTCCATCATTATTTCAC 59.018 38.462 24.07 3.08 0.00 3.18
5241 9358 4.501071 ACACAAATGGTACGTACTCCATC 58.499 43.478 24.07 8.64 42.73 3.51
5245 9371 6.128742 CCAAACTACACAAATGGTACGTACTC 60.129 42.308 24.07 14.94 0.00 2.59
5248 9374 4.996122 CCCAAACTACACAAATGGTACGTA 59.004 41.667 0.00 0.00 0.00 3.57
5253 9379 4.712337 TGTTTCCCAAACTACACAAATGGT 59.288 37.500 1.11 0.00 41.90 3.55
5260 9386 3.217681 TCCCTGTTTCCCAAACTACAC 57.782 47.619 1.11 0.00 41.90 2.90
5307 9433 1.685820 GTCCACAGCCTAGCCCTTT 59.314 57.895 0.00 0.00 0.00 3.11
5341 9491 3.733960 GAAAGGCCGGGTCGCAAC 61.734 66.667 2.18 0.00 0.00 4.17
5353 9503 5.707298 TCAGAAACTAAAGGCATCAGAAAGG 59.293 40.000 0.00 0.00 0.00 3.11
5367 9517 8.602424 TGAGAAGTGGGATTATTCAGAAACTAA 58.398 33.333 0.00 0.00 0.00 2.24
5368 9518 8.041323 GTGAGAAGTGGGATTATTCAGAAACTA 58.959 37.037 0.00 0.00 0.00 2.24
5385 9535 7.042389 GGTTAACTGAAGAAGAAGTGAGAAGTG 60.042 40.741 5.42 0.00 0.00 3.16
5386 9536 6.987404 GGTTAACTGAAGAAGAAGTGAGAAGT 59.013 38.462 5.42 0.00 0.00 3.01
5393 9543 5.828328 CCCAAAGGTTAACTGAAGAAGAAGT 59.172 40.000 5.42 0.00 0.00 3.01
5413 9570 1.522806 GCGGCGATGTCATACCCAA 60.523 57.895 12.98 0.00 0.00 4.12
5438 9595 2.048127 GAAACGGAGTCGCAGCCT 60.048 61.111 0.00 0.00 45.00 4.58
5472 9629 1.271543 TGGTGAAATGGAGACTGCAGG 60.272 52.381 19.93 0.00 0.00 4.85
5473 9630 2.189594 TGGTGAAATGGAGACTGCAG 57.810 50.000 13.48 13.48 0.00 4.41
5474 9631 2.715046 GATGGTGAAATGGAGACTGCA 58.285 47.619 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.