Multiple sequence alignment - TraesCS6A01G022900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G022900 chr6A 100.000 3042 0 0 1 3042 11435111 11432070 0.000000e+00 5618
1 TraesCS6A01G022900 chr6A 98.020 505 9 1 2309 2813 11417747 11417244 0.000000e+00 876
2 TraesCS6A01G022900 chr6A 83.175 315 50 2 1033 1347 11116265 11115954 4.960000e-73 285
3 TraesCS6A01G022900 chr6D 87.471 1293 146 13 1022 2311 9907927 9906648 0.000000e+00 1476
4 TraesCS6A01G022900 chr6D 94.974 756 36 2 264 1017 2038217 2038972 0.000000e+00 1184
5 TraesCS6A01G022900 chr6D 96.138 492 19 0 1 492 2042839 2043330 0.000000e+00 804
6 TraesCS6A01G022900 chr6B 87.003 1308 141 18 1022 2311 18149555 18148259 0.000000e+00 1447
7 TraesCS6A01G022900 chr6B 86.743 1305 145 19 1022 2311 18299822 18298531 0.000000e+00 1426
8 TraesCS6A01G022900 chr6B 98.643 221 3 0 2822 3042 391086460 391086240 2.840000e-105 392
9 TraesCS6A01G022900 chr6B 98.611 216 3 0 2827 3042 2818159 2817944 1.710000e-102 383
10 TraesCS6A01G022900 chrUn 86.228 1307 159 13 1019 2311 71219566 71220865 0.000000e+00 1397
11 TraesCS6A01G022900 chrUn 95.757 872 24 6 1442 2311 71181591 71182451 0.000000e+00 1393
12 TraesCS6A01G022900 chrUn 86.032 1260 155 13 1066 2311 321359139 321360391 0.000000e+00 1332
13 TraesCS6A01G022900 chrUn 91.799 756 55 5 265 1016 73941792 73941040 0.000000e+00 1046
14 TraesCS6A01G022900 chrUn 94.610 538 23 2 1012 1546 71181058 71181592 0.000000e+00 828
15 TraesCS6A01G022900 chrUn 95.740 493 20 1 1 492 408787380 408786888 0.000000e+00 793
16 TraesCS6A01G022900 chrUn 94.389 499 26 2 1 498 73937146 73936649 0.000000e+00 765
17 TraesCS6A01G022900 chrUn 89.019 428 40 6 1887 2311 71264540 71264117 9.660000e-145 523
18 TraesCS6A01G022900 chrUn 87.118 458 49 5 1405 1859 71264990 71264540 7.520000e-141 510
19 TraesCS6A01G022900 chrUn 89.562 297 31 0 1028 1324 71265318 71265022 7.960000e-101 377
20 TraesCS6A01G022900 chrUn 82.857 315 51 2 1033 1347 172237940 172237629 2.310000e-71 279
21 TraesCS6A01G022900 chrUn 79.530 298 55 2 1029 1320 71184043 71184340 1.110000e-49 207
22 TraesCS6A01G022900 chr7D 95.497 755 32 2 265 1017 4707141 4707895 0.000000e+00 1205
23 TraesCS6A01G022900 chr7D 96.349 493 18 0 1 493 4711764 4712256 0.000000e+00 811
24 TraesCS6A01G022900 chr7D 96.138 492 19 0 1 492 112407254 112407745 0.000000e+00 804
25 TraesCS6A01G022900 chr7D 96.138 492 19 0 1 492 614927499 614927990 0.000000e+00 804
26 TraesCS6A01G022900 chr2D 94.974 756 35 3 264 1017 435915816 435915062 0.000000e+00 1182
27 TraesCS6A01G022900 chr2D 94.974 756 35 3 264 1017 435919557 435918803 0.000000e+00 1182
28 TraesCS6A01G022900 chr7B 94.702 755 38 2 265 1017 650259106 650258352 0.000000e+00 1171
29 TraesCS6A01G022900 chr7B 94.702 755 38 2 265 1017 650264456 650263702 0.000000e+00 1171
30 TraesCS6A01G022900 chr7B 99.078 217 2 0 2826 3042 192773702 192773918 1.020000e-104 390
31 TraesCS6A01G022900 chr3A 94.709 756 37 3 264 1016 688029292 688028537 0.000000e+00 1171
32 TraesCS6A01G022900 chr3A 98.403 501 8 0 2309 2809 706834367 706834867 0.000000e+00 881
33 TraesCS6A01G022900 chr3A 97.804 501 11 0 2309 2809 10964759 10965259 0.000000e+00 865
34 TraesCS6A01G022900 chr3A 96.146 493 18 1 1 492 688024640 688024148 0.000000e+00 804
35 TraesCS6A01G022900 chr2A 94.437 755 39 3 265 1016 30874794 30875548 0.000000e+00 1158
36 TraesCS6A01G022900 chr2A 95.335 493 22 1 1 492 30906793 30907285 0.000000e+00 782
37 TraesCS6A01G022900 chr4A 97.115 520 13 2 2309 2826 727746356 727746875 0.000000e+00 876
38 TraesCS6A01G022900 chr4A 96.923 520 14 2 2309 2826 727752898 727753417 0.000000e+00 870
39 TraesCS6A01G022900 chr4A 97.018 503 13 2 2309 2809 727754345 727754847 0.000000e+00 845
40 TraesCS6A01G022900 chr3B 97.115 520 12 3 2309 2826 207727680 207727162 0.000000e+00 874
41 TraesCS6A01G022900 chr3B 97.222 504 12 2 2309 2810 207726246 207725743 0.000000e+00 852
42 TraesCS6A01G022900 chr3D 94.788 518 23 2 2309 2826 419468685 419469198 0.000000e+00 804
43 TraesCS6A01G022900 chr1B 93.509 493 30 2 1 492 37592766 37592275 0.000000e+00 732
44 TraesCS6A01G022900 chr1B 99.078 217 2 0 2826 3042 669344026 669344242 1.020000e-104 390
45 TraesCS6A01G022900 chr5A 99.074 216 2 0 2827 3042 328022894 328022679 3.680000e-104 388
46 TraesCS6A01G022900 chr5B 98.611 216 3 0 2827 3042 682459365 682459150 1.710000e-102 383
47 TraesCS6A01G022900 chr2B 98.611 216 3 0 2827 3042 47196581 47196366 1.710000e-102 383
48 TraesCS6A01G022900 chr2B 98.157 217 4 0 2826 3042 770072606 770072822 2.210000e-101 379
49 TraesCS6A01G022900 chr1A 97.738 221 5 0 2822 3042 12674179 12674399 6.150000e-102 381


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G022900 chr6A 11432070 11435111 3041 True 5618.000000 5618 100.000000 1 3042 1 chr6A.!!$R3 3041
1 TraesCS6A01G022900 chr6A 11417244 11417747 503 True 876.000000 876 98.020000 2309 2813 1 chr6A.!!$R2 504
2 TraesCS6A01G022900 chr6D 9906648 9907927 1279 True 1476.000000 1476 87.471000 1022 2311 1 chr6D.!!$R1 1289
3 TraesCS6A01G022900 chr6D 2038217 2043330 5113 False 994.000000 1184 95.556000 1 1017 2 chr6D.!!$F1 1016
4 TraesCS6A01G022900 chr6B 18148259 18149555 1296 True 1447.000000 1447 87.003000 1022 2311 1 chr6B.!!$R2 1289
5 TraesCS6A01G022900 chr6B 18298531 18299822 1291 True 1426.000000 1426 86.743000 1022 2311 1 chr6B.!!$R3 1289
6 TraesCS6A01G022900 chrUn 71219566 71220865 1299 False 1397.000000 1397 86.228000 1019 2311 1 chrUn.!!$F1 1292
7 TraesCS6A01G022900 chrUn 321359139 321360391 1252 False 1332.000000 1332 86.032000 1066 2311 1 chrUn.!!$F2 1245
8 TraesCS6A01G022900 chrUn 73936649 73941792 5143 True 905.500000 1046 93.094000 1 1016 2 chrUn.!!$R4 1015
9 TraesCS6A01G022900 chrUn 71181058 71184340 3282 False 809.333333 1393 89.965667 1012 2311 3 chrUn.!!$F3 1299
10 TraesCS6A01G022900 chrUn 71264117 71265318 1201 True 470.000000 523 88.566333 1028 2311 3 chrUn.!!$R3 1283
11 TraesCS6A01G022900 chr7D 4707141 4712256 5115 False 1008.000000 1205 95.923000 1 1017 2 chr7D.!!$F3 1016
12 TraesCS6A01G022900 chr2D 435915062 435919557 4495 True 1182.000000 1182 94.974000 264 1017 2 chr2D.!!$R1 753
13 TraesCS6A01G022900 chr7B 650258352 650259106 754 True 1171.000000 1171 94.702000 265 1017 1 chr7B.!!$R1 752
14 TraesCS6A01G022900 chr7B 650263702 650264456 754 True 1171.000000 1171 94.702000 265 1017 1 chr7B.!!$R2 752
15 TraesCS6A01G022900 chr3A 688024148 688029292 5144 True 987.500000 1171 95.427500 1 1016 2 chr3A.!!$R1 1015
16 TraesCS6A01G022900 chr3A 706834367 706834867 500 False 881.000000 881 98.403000 2309 2809 1 chr3A.!!$F2 500
17 TraesCS6A01G022900 chr3A 10964759 10965259 500 False 865.000000 865 97.804000 2309 2809 1 chr3A.!!$F1 500
18 TraesCS6A01G022900 chr2A 30874794 30875548 754 False 1158.000000 1158 94.437000 265 1016 1 chr2A.!!$F1 751
19 TraesCS6A01G022900 chr4A 727746356 727746875 519 False 876.000000 876 97.115000 2309 2826 1 chr4A.!!$F1 517
20 TraesCS6A01G022900 chr4A 727752898 727754847 1949 False 857.500000 870 96.970500 2309 2826 2 chr4A.!!$F2 517
21 TraesCS6A01G022900 chr3B 207725743 207727680 1937 True 863.000000 874 97.168500 2309 2826 2 chr3B.!!$R1 517
22 TraesCS6A01G022900 chr3D 419468685 419469198 513 False 804.000000 804 94.788000 2309 2826 1 chr3D.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.185901 AGAGAAAGGGTTGCAGCCAA 59.814 50.0 22.07 0.00 38.48 4.52 F
136 137 0.185901 AGAAAGGGTTGCAGCCAAGA 59.814 50.0 22.07 0.00 38.48 3.02 F
200 201 0.824109 GGATTTACCAAGGCCTTGCC 59.176 55.0 35.85 26.44 43.37 4.52 F
1814 1943 0.324552 CATTTCTGGTGGGGATGCCA 60.325 55.0 5.30 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1196 1202 0.172803 GCAGTCGATCTGTAACCGGT 59.827 55.0 0.0 0.0 45.23 5.28 R
1576 1705 0.976641 AGAAAGCTGACCATGTCCGA 59.023 50.0 0.0 0.0 0.00 4.55 R
1944 2472 1.108776 ATTGCCGAAGTAGCCGTCTA 58.891 50.0 0.0 0.0 0.00 2.59 R
2886 9327 0.106015 GGTAACTAGGAGGCGGGGTA 60.106 60.0 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.034030 ACGCTGCAAACAAGCTCC 58.966 55.556 0.00 0.00 34.99 4.70
18 19 1.823470 ACGCTGCAAACAAGCTCCA 60.823 52.632 0.00 0.00 34.99 3.86
19 20 1.174712 ACGCTGCAAACAAGCTCCAT 61.175 50.000 0.00 0.00 34.99 3.41
20 21 0.731514 CGCTGCAAACAAGCTCCATG 60.732 55.000 0.00 0.00 34.99 3.66
21 22 1.012486 GCTGCAAACAAGCTCCATGC 61.012 55.000 0.00 6.75 43.29 4.06
32 33 2.042686 GCTCCATGCTTATGGTGTGA 57.957 50.000 6.24 0.00 42.28 3.58
33 34 2.579873 GCTCCATGCTTATGGTGTGAT 58.420 47.619 6.24 0.00 42.28 3.06
34 35 3.743521 GCTCCATGCTTATGGTGTGATA 58.256 45.455 6.24 0.00 42.28 2.15
35 36 4.136796 GCTCCATGCTTATGGTGTGATAA 58.863 43.478 6.24 0.00 42.28 1.75
36 37 4.023707 GCTCCATGCTTATGGTGTGATAAC 60.024 45.833 6.24 0.00 42.28 1.89
37 38 4.460263 TCCATGCTTATGGTGTGATAACC 58.540 43.478 6.24 0.00 42.28 2.85
38 39 4.165950 TCCATGCTTATGGTGTGATAACCT 59.834 41.667 6.24 0.00 42.28 3.50
39 40 4.889409 CCATGCTTATGGTGTGATAACCTT 59.111 41.667 0.00 0.00 41.16 3.50
40 41 5.221106 CCATGCTTATGGTGTGATAACCTTG 60.221 44.000 0.00 0.00 41.16 3.61
41 42 4.269183 TGCTTATGGTGTGATAACCTTGG 58.731 43.478 0.00 0.00 41.16 3.61
42 43 4.263727 TGCTTATGGTGTGATAACCTTGGT 60.264 41.667 0.00 0.00 41.16 3.67
43 44 4.096382 GCTTATGGTGTGATAACCTTGGTG 59.904 45.833 0.00 0.00 41.16 4.17
44 45 1.904287 TGGTGTGATAACCTTGGTGC 58.096 50.000 0.00 0.00 41.16 5.01
45 46 1.423541 TGGTGTGATAACCTTGGTGCT 59.576 47.619 0.00 0.00 41.16 4.40
46 47 2.640332 TGGTGTGATAACCTTGGTGCTA 59.360 45.455 0.00 0.00 41.16 3.49
47 48 3.007635 GGTGTGATAACCTTGGTGCTAC 58.992 50.000 0.00 0.00 37.24 3.58
48 49 3.558321 GGTGTGATAACCTTGGTGCTACA 60.558 47.826 0.00 0.00 37.24 2.74
49 50 4.261801 GTGTGATAACCTTGGTGCTACAT 58.738 43.478 0.00 0.00 0.00 2.29
50 51 5.424757 GTGTGATAACCTTGGTGCTACATA 58.575 41.667 0.00 0.00 0.00 2.29
51 52 6.055588 GTGTGATAACCTTGGTGCTACATAT 58.944 40.000 0.00 0.00 0.00 1.78
52 53 6.202954 GTGTGATAACCTTGGTGCTACATATC 59.797 42.308 0.00 0.00 0.00 1.63
53 54 6.099701 TGTGATAACCTTGGTGCTACATATCT 59.900 38.462 0.00 0.00 0.00 1.98
54 55 6.992715 GTGATAACCTTGGTGCTACATATCTT 59.007 38.462 0.00 0.00 0.00 2.40
55 56 7.499232 GTGATAACCTTGGTGCTACATATCTTT 59.501 37.037 0.00 0.00 0.00 2.52
56 57 7.715249 TGATAACCTTGGTGCTACATATCTTTC 59.285 37.037 0.00 0.00 0.00 2.62
57 58 5.700402 ACCTTGGTGCTACATATCTTTCT 57.300 39.130 0.00 0.00 0.00 2.52
58 59 5.431765 ACCTTGGTGCTACATATCTTTCTG 58.568 41.667 0.00 0.00 0.00 3.02
59 60 4.274459 CCTTGGTGCTACATATCTTTCTGC 59.726 45.833 0.00 0.00 0.00 4.26
60 61 4.760530 TGGTGCTACATATCTTTCTGCT 57.239 40.909 0.00 0.00 0.00 4.24
61 62 5.869649 TGGTGCTACATATCTTTCTGCTA 57.130 39.130 0.00 0.00 0.00 3.49
62 63 6.233905 TGGTGCTACATATCTTTCTGCTAA 57.766 37.500 0.00 0.00 0.00 3.09
63 64 6.830912 TGGTGCTACATATCTTTCTGCTAAT 58.169 36.000 0.00 0.00 0.00 1.73
64 65 6.931281 TGGTGCTACATATCTTTCTGCTAATC 59.069 38.462 0.00 0.00 0.00 1.75
65 66 6.370166 GGTGCTACATATCTTTCTGCTAATCC 59.630 42.308 0.00 0.00 0.00 3.01
66 67 6.090088 GTGCTACATATCTTTCTGCTAATCCG 59.910 42.308 0.00 0.00 0.00 4.18
67 68 5.578727 GCTACATATCTTTCTGCTAATCCGG 59.421 44.000 0.00 0.00 0.00 5.14
68 69 5.552870 ACATATCTTTCTGCTAATCCGGT 57.447 39.130 0.00 0.00 0.00 5.28
69 70 5.930135 ACATATCTTTCTGCTAATCCGGTT 58.070 37.500 0.00 0.00 0.00 4.44
70 71 6.357367 ACATATCTTTCTGCTAATCCGGTTT 58.643 36.000 0.00 1.12 0.00 3.27
71 72 6.828785 ACATATCTTTCTGCTAATCCGGTTTT 59.171 34.615 0.00 0.00 0.00 2.43
72 73 7.339466 ACATATCTTTCTGCTAATCCGGTTTTT 59.661 33.333 0.00 0.00 0.00 1.94
73 74 5.622770 TCTTTCTGCTAATCCGGTTTTTC 57.377 39.130 0.00 0.00 0.00 2.29
74 75 5.067273 TCTTTCTGCTAATCCGGTTTTTCA 58.933 37.500 0.00 0.30 0.00 2.69
75 76 5.710099 TCTTTCTGCTAATCCGGTTTTTCAT 59.290 36.000 0.00 0.00 0.00 2.57
76 77 4.963276 TCTGCTAATCCGGTTTTTCATG 57.037 40.909 0.00 0.00 0.00 3.07
77 78 3.128589 TCTGCTAATCCGGTTTTTCATGC 59.871 43.478 0.00 1.21 0.00 4.06
78 79 2.822561 TGCTAATCCGGTTTTTCATGCA 59.177 40.909 0.00 0.00 0.00 3.96
79 80 3.179048 GCTAATCCGGTTTTTCATGCAC 58.821 45.455 0.00 0.00 0.00 4.57
80 81 2.346099 AATCCGGTTTTTCATGCACG 57.654 45.000 0.00 0.00 0.00 5.34
81 82 1.529226 ATCCGGTTTTTCATGCACGA 58.471 45.000 0.00 0.00 0.00 4.35
82 83 1.309950 TCCGGTTTTTCATGCACGAA 58.690 45.000 0.00 0.00 0.00 3.85
83 84 1.002251 TCCGGTTTTTCATGCACGAAC 60.002 47.619 0.00 0.00 0.00 3.95
84 85 1.001815 CCGGTTTTTCATGCACGAACT 60.002 47.619 0.00 0.00 0.00 3.01
85 86 2.224549 CCGGTTTTTCATGCACGAACTA 59.775 45.455 0.00 0.00 0.00 2.24
86 87 3.304123 CCGGTTTTTCATGCACGAACTAA 60.304 43.478 0.00 0.00 0.00 2.24
87 88 4.283678 CGGTTTTTCATGCACGAACTAAA 58.716 39.130 0.00 0.00 0.00 1.85
88 89 4.145756 CGGTTTTTCATGCACGAACTAAAC 59.854 41.667 12.23 12.23 30.21 2.01
89 90 5.038033 GGTTTTTCATGCACGAACTAAACA 58.962 37.500 18.95 0.00 31.59 2.83
90 91 5.689961 GGTTTTTCATGCACGAACTAAACAT 59.310 36.000 18.95 0.00 31.59 2.71
91 92 6.858993 GGTTTTTCATGCACGAACTAAACATA 59.141 34.615 18.95 0.00 31.59 2.29
92 93 7.540745 GGTTTTTCATGCACGAACTAAACATAT 59.459 33.333 18.95 0.00 31.59 1.78
93 94 8.575454 GTTTTTCATGCACGAACTAAACATATC 58.425 33.333 14.64 0.00 30.89 1.63
94 95 5.635549 TCATGCACGAACTAAACATATCG 57.364 39.130 0.00 0.00 40.90 2.92
95 96 5.344884 TCATGCACGAACTAAACATATCGA 58.655 37.500 0.00 0.00 38.59 3.59
96 97 5.808030 TCATGCACGAACTAAACATATCGAA 59.192 36.000 0.00 0.00 38.59 3.71
97 98 6.311690 TCATGCACGAACTAAACATATCGAAA 59.688 34.615 0.00 0.00 38.59 3.46
98 99 6.656314 TGCACGAACTAAACATATCGAAAT 57.344 33.333 0.64 0.00 38.59 2.17
99 100 7.758613 TGCACGAACTAAACATATCGAAATA 57.241 32.000 0.64 0.00 38.59 1.40
100 101 7.837505 TGCACGAACTAAACATATCGAAATAG 58.162 34.615 0.64 0.00 38.59 1.73
101 102 7.703197 TGCACGAACTAAACATATCGAAATAGA 59.297 33.333 0.64 0.00 38.59 1.98
102 103 8.700644 GCACGAACTAAACATATCGAAATAGAT 58.299 33.333 0.64 0.00 38.59 1.98
117 118 8.601845 TCGAAATAGATTTTCACTTTGTCAGA 57.398 30.769 0.00 0.00 0.00 3.27
118 119 8.712363 TCGAAATAGATTTTCACTTTGTCAGAG 58.288 33.333 0.00 0.00 0.00 3.35
119 120 8.712363 CGAAATAGATTTTCACTTTGTCAGAGA 58.288 33.333 0.00 0.00 0.00 3.10
123 124 7.269477 AGATTTTCACTTTGTCAGAGAAAGG 57.731 36.000 21.02 11.81 41.44 3.11
124 125 5.835113 TTTTCACTTTGTCAGAGAAAGGG 57.165 39.130 21.02 18.16 41.44 3.95
125 126 4.503714 TTCACTTTGTCAGAGAAAGGGT 57.496 40.909 19.20 1.32 35.64 4.34
126 127 4.503714 TCACTTTGTCAGAGAAAGGGTT 57.496 40.909 19.20 0.00 35.64 4.11
127 128 4.199310 TCACTTTGTCAGAGAAAGGGTTG 58.801 43.478 19.20 11.15 35.64 3.77
128 129 2.952310 ACTTTGTCAGAGAAAGGGTTGC 59.048 45.455 21.02 0.00 35.15 4.17
129 130 2.727123 TTGTCAGAGAAAGGGTTGCA 57.273 45.000 0.00 0.00 0.00 4.08
130 131 2.260844 TGTCAGAGAAAGGGTTGCAG 57.739 50.000 0.00 0.00 0.00 4.41
131 132 0.877743 GTCAGAGAAAGGGTTGCAGC 59.122 55.000 0.00 0.00 0.00 5.25
132 133 0.250901 TCAGAGAAAGGGTTGCAGCC 60.251 55.000 11.82 11.82 35.59 4.85
133 134 0.538057 CAGAGAAAGGGTTGCAGCCA 60.538 55.000 22.07 0.00 38.48 4.75
134 135 0.185901 AGAGAAAGGGTTGCAGCCAA 59.814 50.000 22.07 0.00 38.48 4.52
135 136 0.600057 GAGAAAGGGTTGCAGCCAAG 59.400 55.000 22.07 0.00 38.48 3.61
136 137 0.185901 AGAAAGGGTTGCAGCCAAGA 59.814 50.000 22.07 0.00 38.48 3.02
137 138 1.039856 GAAAGGGTTGCAGCCAAGAA 58.960 50.000 22.07 0.00 38.48 2.52
138 139 1.412343 GAAAGGGTTGCAGCCAAGAAA 59.588 47.619 22.07 0.00 38.48 2.52
139 140 1.720781 AAGGGTTGCAGCCAAGAAAT 58.279 45.000 22.07 0.00 38.48 2.17
140 141 1.720781 AGGGTTGCAGCCAAGAAATT 58.279 45.000 22.07 0.00 38.48 1.82
141 142 1.345415 AGGGTTGCAGCCAAGAAATTG 59.655 47.619 22.07 0.00 38.48 2.32
142 143 1.608801 GGGTTGCAGCCAAGAAATTGG 60.609 52.381 22.07 2.57 44.82 3.16
143 144 1.344114 GGTTGCAGCCAAGAAATTGGA 59.656 47.619 15.64 0.00 44.82 3.53
144 145 2.027837 GGTTGCAGCCAAGAAATTGGAT 60.028 45.455 15.64 1.17 44.82 3.41
149 150 3.855689 AGCCAAGAAATTGGATGTTCG 57.144 42.857 11.14 0.00 44.82 3.95
150 151 2.493278 AGCCAAGAAATTGGATGTTCGG 59.507 45.455 11.14 0.00 44.82 4.30
151 152 2.231235 GCCAAGAAATTGGATGTTCGGT 59.769 45.455 11.14 0.00 44.82 4.69
152 153 3.306019 GCCAAGAAATTGGATGTTCGGTT 60.306 43.478 11.14 0.00 44.82 4.44
153 154 4.799255 GCCAAGAAATTGGATGTTCGGTTT 60.799 41.667 11.14 0.00 44.82 3.27
154 155 5.565834 GCCAAGAAATTGGATGTTCGGTTTA 60.566 40.000 11.14 0.00 44.82 2.01
155 156 6.630071 CCAAGAAATTGGATGTTCGGTTTAT 58.370 36.000 0.53 0.00 44.82 1.40
156 157 7.096551 CCAAGAAATTGGATGTTCGGTTTATT 58.903 34.615 0.53 0.00 44.82 1.40
157 158 7.275560 CCAAGAAATTGGATGTTCGGTTTATTC 59.724 37.037 0.53 0.00 44.82 1.75
158 159 7.461182 AGAAATTGGATGTTCGGTTTATTCA 57.539 32.000 0.00 0.00 0.00 2.57
159 160 8.066612 AGAAATTGGATGTTCGGTTTATTCAT 57.933 30.769 0.00 0.00 0.00 2.57
160 161 8.531146 AGAAATTGGATGTTCGGTTTATTCATT 58.469 29.630 0.00 0.00 0.00 2.57
161 162 8.702163 AAATTGGATGTTCGGTTTATTCATTC 57.298 30.769 0.00 0.00 0.00 2.67
162 163 7.645058 ATTGGATGTTCGGTTTATTCATTCT 57.355 32.000 0.00 0.00 0.00 2.40
163 164 6.677781 TGGATGTTCGGTTTATTCATTCTC 57.322 37.500 0.00 0.00 0.00 2.87
164 165 6.176896 TGGATGTTCGGTTTATTCATTCTCA 58.823 36.000 0.00 0.00 0.00 3.27
165 166 6.657117 TGGATGTTCGGTTTATTCATTCTCAA 59.343 34.615 0.00 0.00 0.00 3.02
166 167 7.148255 TGGATGTTCGGTTTATTCATTCTCAAG 60.148 37.037 0.00 0.00 0.00 3.02
167 168 7.065803 GGATGTTCGGTTTATTCATTCTCAAGA 59.934 37.037 0.00 0.00 0.00 3.02
168 169 7.921786 TGTTCGGTTTATTCATTCTCAAGAT 57.078 32.000 0.00 0.00 0.00 2.40
169 170 7.974675 TGTTCGGTTTATTCATTCTCAAGATC 58.025 34.615 0.00 0.00 0.00 2.75
170 171 7.606073 TGTTCGGTTTATTCATTCTCAAGATCA 59.394 33.333 0.00 0.00 0.00 2.92
171 172 8.450964 GTTCGGTTTATTCATTCTCAAGATCAA 58.549 33.333 0.00 0.00 0.00 2.57
172 173 8.201554 TCGGTTTATTCATTCTCAAGATCAAG 57.798 34.615 0.00 0.00 0.00 3.02
173 174 7.824289 TCGGTTTATTCATTCTCAAGATCAAGT 59.176 33.333 0.00 0.00 0.00 3.16
174 175 8.454106 CGGTTTATTCATTCTCAAGATCAAGTT 58.546 33.333 0.00 0.00 0.00 2.66
175 176 9.565213 GGTTTATTCATTCTCAAGATCAAGTTG 57.435 33.333 0.00 0.00 0.00 3.16
179 180 7.806409 TTCATTCTCAAGATCAAGTTGTTGA 57.194 32.000 2.11 5.12 46.81 3.18
191 192 6.968263 TCAAGTTGTTGATGGATTTACCAA 57.032 33.333 2.11 0.00 40.72 3.67
192 193 6.980593 TCAAGTTGTTGATGGATTTACCAAG 58.019 36.000 2.11 0.00 40.72 3.61
193 194 6.015519 TCAAGTTGTTGATGGATTTACCAAGG 60.016 38.462 2.11 0.00 40.72 3.61
194 195 9.349336 TCAAGTTGTTGATGGATTTACCAAGGC 62.349 40.741 2.11 0.00 40.72 4.35
199 200 1.555967 TGGATTTACCAAGGCCTTGC 58.444 50.000 35.85 22.13 46.75 4.01
200 201 0.824109 GGATTTACCAAGGCCTTGCC 59.176 55.000 35.85 26.44 43.37 4.52
219 220 6.767524 TTGCCTACAAGAAGTTTTGAGAAA 57.232 33.333 5.24 0.00 0.00 2.52
220 221 6.959639 TGCCTACAAGAAGTTTTGAGAAAT 57.040 33.333 5.24 0.00 0.00 2.17
221 222 7.346751 TGCCTACAAGAAGTTTTGAGAAATT 57.653 32.000 5.24 0.00 0.00 1.82
222 223 7.781056 TGCCTACAAGAAGTTTTGAGAAATTT 58.219 30.769 0.00 0.00 0.00 1.82
223 224 8.908903 TGCCTACAAGAAGTTTTGAGAAATTTA 58.091 29.630 0.00 0.00 0.00 1.40
224 225 9.744468 GCCTACAAGAAGTTTTGAGAAATTTAA 57.256 29.630 0.00 0.00 0.00 1.52
227 228 8.340230 ACAAGAAGTTTTGAGAAATTTAAGCG 57.660 30.769 0.00 0.00 0.00 4.68
228 229 7.973944 ACAAGAAGTTTTGAGAAATTTAAGCGT 59.026 29.630 0.00 0.00 0.00 5.07
229 230 9.445786 CAAGAAGTTTTGAGAAATTTAAGCGTA 57.554 29.630 0.00 0.00 0.00 4.42
234 235 9.827411 AGTTTTGAGAAATTTAAGCGTAATCTC 57.173 29.630 12.05 12.05 34.01 2.75
235 236 9.607285 GTTTTGAGAAATTTAAGCGTAATCTCA 57.393 29.630 15.70 15.70 39.82 3.27
237 238 9.607285 TTTGAGAAATTTAAGCGTAATCTCAAC 57.393 29.630 24.23 9.37 46.30 3.18
238 239 8.547967 TGAGAAATTTAAGCGTAATCTCAACT 57.452 30.769 16.73 3.98 38.94 3.16
239 240 8.999431 TGAGAAATTTAAGCGTAATCTCAACTT 58.001 29.630 16.73 0.00 38.94 2.66
240 241 9.267096 GAGAAATTTAAGCGTAATCTCAACTTG 57.733 33.333 13.36 0.00 33.70 3.16
241 242 8.784043 AGAAATTTAAGCGTAATCTCAACTTGT 58.216 29.630 0.00 0.00 0.00 3.16
242 243 8.950403 AAATTTAAGCGTAATCTCAACTTGTC 57.050 30.769 0.00 0.00 0.00 3.18
243 244 6.476243 TTTAAGCGTAATCTCAACTTGTCC 57.524 37.500 0.00 0.00 0.00 4.02
244 245 3.678056 AGCGTAATCTCAACTTGTCCA 57.322 42.857 0.00 0.00 0.00 4.02
245 246 4.002906 AGCGTAATCTCAACTTGTCCAA 57.997 40.909 0.00 0.00 0.00 3.53
246 247 3.997021 AGCGTAATCTCAACTTGTCCAAG 59.003 43.478 5.51 5.51 43.79 3.61
259 260 5.314923 CTTGTCCAAGTTGTGATTATGGG 57.685 43.478 1.45 0.00 33.87 4.00
260 261 4.649267 TGTCCAAGTTGTGATTATGGGA 57.351 40.909 1.45 0.00 0.00 4.37
261 262 4.588899 TGTCCAAGTTGTGATTATGGGAG 58.411 43.478 1.45 0.00 0.00 4.30
262 263 3.947834 GTCCAAGTTGTGATTATGGGAGG 59.052 47.826 1.45 0.00 0.00 4.30
325 327 1.534235 CCTGGCCCGGCTAGATAGT 60.534 63.158 23.69 0.00 39.54 2.12
333 335 3.321396 GCCCGGCTAGATAGTTAGAGTTT 59.679 47.826 0.71 0.00 0.00 2.66
526 530 5.280779 GCCTCCTCTATCCACTACATCTAGA 60.281 48.000 0.00 0.00 0.00 2.43
640 646 4.722700 GTGGCGTGCCCAGGTGAT 62.723 66.667 8.69 0.00 46.54 3.06
649 655 2.672651 CCAGGTGATGCCGCAACA 60.673 61.111 0.00 0.00 43.70 3.33
725 731 4.836825 AGTTCATCATCACGAAGGACAAT 58.163 39.130 0.00 0.00 0.00 2.71
851 857 2.035193 CGTGCAGGTCACATCTATAGCT 59.965 50.000 0.00 0.00 45.92 3.32
897 903 1.374252 GCCCACATGTTCTCGTCGT 60.374 57.895 0.00 0.00 0.00 4.34
899 905 1.470979 GCCCACATGTTCTCGTCGTAT 60.471 52.381 0.00 0.00 0.00 3.06
998 1004 2.304056 CCACATGAGGTCCCTGGCT 61.304 63.158 0.00 0.00 0.00 4.75
1131 1137 3.130633 CGATGTGACAAGGTTGAAGACA 58.869 45.455 0.00 0.00 0.00 3.41
1134 1140 2.288666 GTGACAAGGTTGAAGACAGCA 58.711 47.619 0.00 0.00 0.00 4.41
1239 1245 1.664321 GCAAGGGCATGCTCTTCCTG 61.664 60.000 30.03 20.71 43.06 3.86
1576 1705 4.762251 GGCTCTGTTGTATTCCACTTCTTT 59.238 41.667 0.00 0.00 0.00 2.52
1603 1732 0.915364 GGTCAGCTTTCTCCAGGGAT 59.085 55.000 0.00 0.00 0.00 3.85
1610 1739 0.909610 TTTCTCCAGGGATGGCGACT 60.910 55.000 0.00 0.00 0.00 4.18
1638 1767 2.276740 GAACCTCCCCTGCCATGG 59.723 66.667 7.63 7.63 0.00 3.66
1670 1799 2.031919 GTGCGTGTGATCCACCCA 59.968 61.111 8.25 3.93 41.26 4.51
1785 1914 4.936891 CTTTCCAAGGACCAACTTTCAAG 58.063 43.478 0.00 0.00 0.00 3.02
1814 1943 0.324552 CATTTCTGGTGGGGATGCCA 60.325 55.000 5.30 0.00 0.00 4.92
1878 2007 1.664965 GCTTAGCCCGGATGCTACG 60.665 63.158 11.47 11.00 43.25 3.51
1944 2472 0.622738 ATCATGAGGCCACCACTCCT 60.623 55.000 5.01 0.00 34.06 3.69
2016 2605 1.001745 CGTGACATCAGTTCGTGCGA 61.002 55.000 0.00 0.00 0.00 5.10
2018 2607 1.008875 TGACATCAGTTCGTGCGAGC 61.009 55.000 0.22 0.22 0.00 5.03
2033 2622 1.803998 GCGAGCAGCTGACATACATCA 60.804 52.381 20.43 0.00 44.04 3.07
2039 2628 1.139654 AGCTGACATACATCATGCGGT 59.860 47.619 0.00 0.00 38.29 5.68
2511 8526 4.619227 CCGGGCCACACACTCGTT 62.619 66.667 4.39 0.00 0.00 3.85
2593 8629 2.160205 TCACTCTAGGAACCACACGAG 58.840 52.381 0.00 0.00 0.00 4.18
2627 8663 0.606401 GGCAGCAGCTAACAACCTCA 60.606 55.000 0.00 0.00 41.70 3.86
2840 9281 8.981659 CCCCCTAATCTTTGTTGAATATCTTTT 58.018 33.333 0.00 0.00 0.00 2.27
2841 9282 9.807649 CCCCTAATCTTTGTTGAATATCTTTTG 57.192 33.333 0.00 0.00 0.00 2.44
2851 9292 9.461312 TTGTTGAATATCTTTTGTATAGGCAGT 57.539 29.630 0.00 0.00 0.00 4.40
2858 9299 9.751542 ATATCTTTTGTATAGGCAGTATATCGC 57.248 33.333 0.00 0.00 0.00 4.58
2859 9300 6.988522 TCTTTTGTATAGGCAGTATATCGCA 58.011 36.000 0.00 0.00 0.00 5.10
2860 9301 7.611770 TCTTTTGTATAGGCAGTATATCGCAT 58.388 34.615 0.00 0.00 0.00 4.73
2861 9302 7.545615 TCTTTTGTATAGGCAGTATATCGCATG 59.454 37.037 0.00 0.00 0.00 4.06
2862 9303 5.914898 TGTATAGGCAGTATATCGCATGT 57.085 39.130 0.00 0.00 0.00 3.21
2863 9304 7.399245 TTGTATAGGCAGTATATCGCATGTA 57.601 36.000 0.00 0.00 0.00 2.29
2865 9306 8.685838 TGTATAGGCAGTATATCGCATGTATA 57.314 34.615 0.00 0.00 0.00 1.47
2866 9307 9.297037 TGTATAGGCAGTATATCGCATGTATAT 57.703 33.333 0.00 1.52 0.00 0.86
2867 9308 9.561270 GTATAGGCAGTATATCGCATGTATATG 57.439 37.037 11.02 0.00 37.36 1.78
2868 9309 6.471233 AGGCAGTATATCGCATGTATATGT 57.529 37.500 11.02 0.00 36.65 2.29
2869 9310 7.582667 AGGCAGTATATCGCATGTATATGTA 57.417 36.000 11.02 0.00 36.65 2.29
2870 9311 7.652727 AGGCAGTATATCGCATGTATATGTAG 58.347 38.462 11.02 0.00 36.65 2.74
2871 9312 6.863645 GGCAGTATATCGCATGTATATGTAGG 59.136 42.308 11.02 0.00 36.65 3.18
2872 9313 7.255486 GGCAGTATATCGCATGTATATGTAGGA 60.255 40.741 11.02 0.00 36.65 2.94
2874 9315 9.833182 CAGTATATCGCATGTATATGTAGGATC 57.167 37.037 11.02 0.00 36.65 3.36
2875 9316 9.574516 AGTATATCGCATGTATATGTAGGATCA 57.425 33.333 11.02 0.00 36.65 2.92
2881 9322 7.044181 CGCATGTATATGTAGGATCATTTCCT 58.956 38.462 1.14 0.00 44.71 3.36
2891 9332 4.368565 GGATCATTTCCTACCTTACCCC 57.631 50.000 0.00 0.00 41.78 4.95
2892 9333 3.244457 GGATCATTTCCTACCTTACCCCG 60.244 52.174 0.00 0.00 41.78 5.73
2894 9335 0.841961 ATTTCCTACCTTACCCCGCC 59.158 55.000 0.00 0.00 0.00 6.13
2895 9336 0.252835 TTTCCTACCTTACCCCGCCT 60.253 55.000 0.00 0.00 0.00 5.52
2897 9338 2.138831 CCTACCTTACCCCGCCTCC 61.139 68.421 0.00 0.00 0.00 4.30
2898 9339 1.075450 CTACCTTACCCCGCCTCCT 60.075 63.158 0.00 0.00 0.00 3.69
2899 9340 0.186873 CTACCTTACCCCGCCTCCTA 59.813 60.000 0.00 0.00 0.00 2.94
2900 9341 0.186873 TACCTTACCCCGCCTCCTAG 59.813 60.000 0.00 0.00 0.00 3.02
2901 9342 1.075450 CCTTACCCCGCCTCCTAGT 60.075 63.158 0.00 0.00 0.00 2.57
2902 9343 0.690077 CCTTACCCCGCCTCCTAGTT 60.690 60.000 0.00 0.00 0.00 2.24
2903 9344 1.412074 CCTTACCCCGCCTCCTAGTTA 60.412 57.143 0.00 0.00 0.00 2.24
2904 9345 1.685517 CTTACCCCGCCTCCTAGTTAC 59.314 57.143 0.00 0.00 0.00 2.50
2906 9347 1.382146 CCCCGCCTCCTAGTTACCA 60.382 63.158 0.00 0.00 0.00 3.25
2907 9348 0.763223 CCCCGCCTCCTAGTTACCAT 60.763 60.000 0.00 0.00 0.00 3.55
2908 9349 0.393077 CCCGCCTCCTAGTTACCATG 59.607 60.000 0.00 0.00 0.00 3.66
2910 9351 2.313317 CCGCCTCCTAGTTACCATGTA 58.687 52.381 0.00 0.00 0.00 2.29
2911 9352 2.897969 CCGCCTCCTAGTTACCATGTAT 59.102 50.000 0.00 0.00 0.00 2.29
2912 9353 4.084287 CCGCCTCCTAGTTACCATGTATA 58.916 47.826 0.00 0.00 0.00 1.47
2913 9354 4.158025 CCGCCTCCTAGTTACCATGTATAG 59.842 50.000 0.00 0.00 0.00 1.31
2914 9355 4.765856 CGCCTCCTAGTTACCATGTATAGT 59.234 45.833 0.00 0.00 0.00 2.12
2915 9356 5.106237 CGCCTCCTAGTTACCATGTATAGTC 60.106 48.000 0.00 0.00 0.00 2.59
2916 9357 5.106237 GCCTCCTAGTTACCATGTATAGTCG 60.106 48.000 0.00 0.00 0.00 4.18
2917 9358 6.236409 CCTCCTAGTTACCATGTATAGTCGA 58.764 44.000 0.00 0.00 0.00 4.20
2920 9361 4.850347 AGTTACCATGTATAGTCGAGGC 57.150 45.455 0.00 0.00 0.00 4.70
2922 9363 0.959553 ACCATGTATAGTCGAGGCCG 59.040 55.000 0.00 0.00 37.07 6.13
2923 9364 0.959553 CCATGTATAGTCGAGGCCGT 59.040 55.000 0.00 0.00 37.05 5.68
2924 9365 1.335964 CCATGTATAGTCGAGGCCGTG 60.336 57.143 0.00 0.00 37.05 4.94
2925 9366 0.959553 ATGTATAGTCGAGGCCGTGG 59.040 55.000 0.00 0.00 37.05 4.94
2926 9367 1.105167 TGTATAGTCGAGGCCGTGGG 61.105 60.000 0.00 0.00 37.05 4.61
2936 9377 3.818787 GCCGTGGGCTGCTCATTG 61.819 66.667 5.08 1.07 46.69 2.82
2937 9378 2.360350 CCGTGGGCTGCTCATTGT 60.360 61.111 5.08 0.00 0.00 2.71
2939 9380 0.676466 CCGTGGGCTGCTCATTGTAA 60.676 55.000 5.08 0.00 0.00 2.41
2940 9381 1.164411 CGTGGGCTGCTCATTGTAAA 58.836 50.000 5.08 0.00 0.00 2.01
2941 9382 1.745087 CGTGGGCTGCTCATTGTAAAT 59.255 47.619 5.08 0.00 0.00 1.40
2943 9384 3.565482 CGTGGGCTGCTCATTGTAAATAT 59.435 43.478 5.08 0.00 0.00 1.28
2944 9385 4.754618 CGTGGGCTGCTCATTGTAAATATA 59.245 41.667 5.08 0.00 0.00 0.86
2946 9387 6.593770 CGTGGGCTGCTCATTGTAAATATATA 59.406 38.462 5.08 0.00 0.00 0.86
2947 9388 7.413000 CGTGGGCTGCTCATTGTAAATATATAC 60.413 40.741 5.08 0.00 0.00 1.47
2948 9389 6.593770 TGGGCTGCTCATTGTAAATATATACG 59.406 38.462 0.00 0.00 0.00 3.06
2949 9390 6.594159 GGGCTGCTCATTGTAAATATATACGT 59.406 38.462 0.00 0.00 0.00 3.57
2952 9393 7.044589 TGCTCATTGTAAATATATACGTGCG 57.955 36.000 0.00 0.00 0.00 5.34
2953 9394 6.643360 TGCTCATTGTAAATATATACGTGCGT 59.357 34.615 0.00 2.05 0.00 5.24
2954 9395 6.948228 GCTCATTGTAAATATATACGTGCGTG 59.052 38.462 7.55 0.00 0.00 5.34
2955 9396 7.358931 GCTCATTGTAAATATATACGTGCGTGT 60.359 37.037 7.55 3.25 0.00 4.49
2956 9397 9.120422 CTCATTGTAAATATATACGTGCGTGTA 57.880 33.333 7.55 5.58 0.00 2.90
2958 9399 9.670180 CATTGTAAATATATACGTGCGTGTATG 57.330 33.333 19.27 3.49 35.85 2.39
2959 9400 7.268186 TGTAAATATATACGTGCGTGTATGC 57.732 36.000 19.27 3.63 35.85 3.14
2960 9401 6.862090 TGTAAATATATACGTGCGTGTATGCA 59.138 34.615 19.27 0.00 43.95 3.96
2966 9407 4.483090 TGCGTGTATGCACCCAAA 57.517 50.000 8.45 0.00 42.39 3.28
2967 9408 2.954161 TGCGTGTATGCACCCAAAT 58.046 47.368 8.45 0.00 42.39 2.32
2969 9410 0.808125 GCGTGTATGCACCCAAATCA 59.192 50.000 8.45 0.00 42.39 2.57
2970 9411 1.201181 GCGTGTATGCACCCAAATCAA 59.799 47.619 8.45 0.00 42.39 2.57
2971 9412 2.159254 GCGTGTATGCACCCAAATCAAT 60.159 45.455 8.45 0.00 42.39 2.57
2974 9415 4.380339 CGTGTATGCACCCAAATCAATTGA 60.380 41.667 11.26 11.26 40.72 2.57
2976 9417 5.015515 TGTATGCACCCAAATCAATTGAGA 58.984 37.500 14.54 0.00 41.85 3.27
2977 9418 4.730949 ATGCACCCAAATCAATTGAGAG 57.269 40.909 14.54 6.00 41.85 3.20
2979 9420 3.896888 TGCACCCAAATCAATTGAGAGTT 59.103 39.130 14.54 5.25 41.85 3.01
2980 9421 4.240096 GCACCCAAATCAATTGAGAGTTG 58.760 43.478 14.54 15.87 41.85 3.16
2981 9422 4.240096 CACCCAAATCAATTGAGAGTTGC 58.760 43.478 14.54 0.00 40.98 4.17
2982 9423 3.896888 ACCCAAATCAATTGAGAGTTGCA 59.103 39.130 14.54 0.00 40.98 4.08
2983 9424 4.529377 ACCCAAATCAATTGAGAGTTGCAT 59.471 37.500 14.54 6.14 40.98 3.96
2984 9425 5.012354 ACCCAAATCAATTGAGAGTTGCATT 59.988 36.000 14.54 0.00 40.98 3.56
2985 9426 5.350365 CCCAAATCAATTGAGAGTTGCATTG 59.650 40.000 14.54 8.17 40.98 2.82
2986 9427 5.163893 CCAAATCAATTGAGAGTTGCATTGC 60.164 40.000 14.54 0.46 40.98 3.56
2987 9428 3.581024 TCAATTGAGAGTTGCATTGCC 57.419 42.857 3.38 0.00 0.00 4.52
2988 9429 2.892215 TCAATTGAGAGTTGCATTGCCA 59.108 40.909 3.38 0.00 0.00 4.92
2989 9430 3.321396 TCAATTGAGAGTTGCATTGCCAA 59.679 39.130 3.38 2.29 0.00 4.52
2990 9431 4.059511 CAATTGAGAGTTGCATTGCCAAA 58.940 39.130 6.12 0.00 0.00 3.28
2992 9433 2.030371 TGAGAGTTGCATTGCCAAACA 58.970 42.857 6.12 0.00 0.00 2.83
2993 9434 2.429971 TGAGAGTTGCATTGCCAAACAA 59.570 40.909 6.12 0.00 44.01 2.83
3006 9447 6.412362 TTGCCAAACAATATGGTAACAGTT 57.588 33.333 0.00 0.00 42.08 3.16
3008 9449 7.275920 TTGCCAAACAATATGGTAACAGTTTT 58.724 30.769 0.00 0.00 42.08 2.43
3021 10241 2.767505 ACAGTTTTCCTCACACGATCC 58.232 47.619 0.00 0.00 0.00 3.36
3027 10247 1.475403 TCCTCACACGATCCTCTTCC 58.525 55.000 0.00 0.00 0.00 3.46
3029 10249 2.241430 TCCTCACACGATCCTCTTCCTA 59.759 50.000 0.00 0.00 0.00 2.94
3031 10251 3.447586 CCTCACACGATCCTCTTCCTAAA 59.552 47.826 0.00 0.00 0.00 1.85
3034 10254 4.082190 TCACACGATCCTCTTCCTAAACAG 60.082 45.833 0.00 0.00 0.00 3.16
3037 10257 3.515901 ACGATCCTCTTCCTAAACAGCTT 59.484 43.478 0.00 0.00 0.00 3.74
3038 10258 4.116238 CGATCCTCTTCCTAAACAGCTTC 58.884 47.826 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.174712 ATGGAGCTTGTTTGCAGCGT 61.175 50.000 0.00 0.00 34.99 5.07
17 18 5.221106 CCAAGGTTATCACACCATAAGCATG 60.221 44.000 5.47 0.00 38.62 4.06
18 19 4.889409 CCAAGGTTATCACACCATAAGCAT 59.111 41.667 5.47 0.00 38.62 3.79
19 20 4.263727 ACCAAGGTTATCACACCATAAGCA 60.264 41.667 5.47 0.00 38.62 3.91
20 21 4.096382 CACCAAGGTTATCACACCATAAGC 59.904 45.833 0.00 0.00 39.62 3.09
21 22 4.096382 GCACCAAGGTTATCACACCATAAG 59.904 45.833 0.00 0.00 39.62 1.73
22 23 4.013728 GCACCAAGGTTATCACACCATAA 58.986 43.478 0.00 0.00 39.62 1.90
23 24 3.265737 AGCACCAAGGTTATCACACCATA 59.734 43.478 0.00 0.00 39.62 2.74
24 25 2.041620 AGCACCAAGGTTATCACACCAT 59.958 45.455 0.00 0.00 39.62 3.55
25 26 1.423541 AGCACCAAGGTTATCACACCA 59.576 47.619 0.00 0.00 39.62 4.17
26 27 2.200373 AGCACCAAGGTTATCACACC 57.800 50.000 0.00 0.00 37.04 4.16
27 28 3.670625 TGTAGCACCAAGGTTATCACAC 58.329 45.455 0.00 0.00 0.00 3.82
28 29 4.568072 ATGTAGCACCAAGGTTATCACA 57.432 40.909 0.00 0.00 0.00 3.58
29 30 6.525629 AGATATGTAGCACCAAGGTTATCAC 58.474 40.000 8.35 0.00 0.00 3.06
30 31 6.747414 AGATATGTAGCACCAAGGTTATCA 57.253 37.500 8.35 0.00 0.00 2.15
31 32 7.934120 AGAAAGATATGTAGCACCAAGGTTATC 59.066 37.037 0.00 0.00 0.00 1.75
32 33 7.716998 CAGAAAGATATGTAGCACCAAGGTTAT 59.283 37.037 0.00 0.00 0.00 1.89
33 34 7.047891 CAGAAAGATATGTAGCACCAAGGTTA 58.952 38.462 0.00 0.00 0.00 2.85
34 35 5.882557 CAGAAAGATATGTAGCACCAAGGTT 59.117 40.000 0.00 0.00 0.00 3.50
35 36 5.431765 CAGAAAGATATGTAGCACCAAGGT 58.568 41.667 0.00 0.00 0.00 3.50
36 37 4.274459 GCAGAAAGATATGTAGCACCAAGG 59.726 45.833 0.00 0.00 0.00 3.61
37 38 5.121811 AGCAGAAAGATATGTAGCACCAAG 58.878 41.667 0.00 0.00 0.00 3.61
38 39 5.102953 AGCAGAAAGATATGTAGCACCAA 57.897 39.130 0.00 0.00 0.00 3.67
39 40 4.760530 AGCAGAAAGATATGTAGCACCA 57.239 40.909 0.00 0.00 0.00 4.17
40 41 6.370166 GGATTAGCAGAAAGATATGTAGCACC 59.630 42.308 0.00 0.00 0.00 5.01
41 42 6.090088 CGGATTAGCAGAAAGATATGTAGCAC 59.910 42.308 0.00 0.00 0.00 4.40
42 43 6.159293 CGGATTAGCAGAAAGATATGTAGCA 58.841 40.000 0.00 0.00 0.00 3.49
43 44 5.578727 CCGGATTAGCAGAAAGATATGTAGC 59.421 44.000 0.00 0.00 0.00 3.58
44 45 6.692486 ACCGGATTAGCAGAAAGATATGTAG 58.308 40.000 9.46 0.00 0.00 2.74
45 46 6.665992 ACCGGATTAGCAGAAAGATATGTA 57.334 37.500 9.46 0.00 0.00 2.29
46 47 5.552870 ACCGGATTAGCAGAAAGATATGT 57.447 39.130 9.46 0.00 0.00 2.29
47 48 6.867662 AAACCGGATTAGCAGAAAGATATG 57.132 37.500 9.46 0.00 0.00 1.78
48 49 7.556275 TGAAAAACCGGATTAGCAGAAAGATAT 59.444 33.333 9.46 0.00 0.00 1.63
49 50 6.882140 TGAAAAACCGGATTAGCAGAAAGATA 59.118 34.615 9.46 0.00 0.00 1.98
50 51 5.710099 TGAAAAACCGGATTAGCAGAAAGAT 59.290 36.000 9.46 0.00 0.00 2.40
51 52 5.067273 TGAAAAACCGGATTAGCAGAAAGA 58.933 37.500 9.46 0.00 0.00 2.52
52 53 5.371115 TGAAAAACCGGATTAGCAGAAAG 57.629 39.130 9.46 0.00 0.00 2.62
53 54 5.708948 CATGAAAAACCGGATTAGCAGAAA 58.291 37.500 9.46 0.00 0.00 2.52
54 55 4.380444 GCATGAAAAACCGGATTAGCAGAA 60.380 41.667 9.46 0.00 0.00 3.02
55 56 3.128589 GCATGAAAAACCGGATTAGCAGA 59.871 43.478 9.46 0.00 0.00 4.26
56 57 3.119531 TGCATGAAAAACCGGATTAGCAG 60.120 43.478 9.46 0.73 0.00 4.24
57 58 2.822561 TGCATGAAAAACCGGATTAGCA 59.177 40.909 9.46 4.91 0.00 3.49
58 59 3.179048 GTGCATGAAAAACCGGATTAGC 58.821 45.455 9.46 3.66 0.00 3.09
59 60 3.126171 TCGTGCATGAAAAACCGGATTAG 59.874 43.478 9.46 0.00 0.00 1.73
60 61 3.075148 TCGTGCATGAAAAACCGGATTA 58.925 40.909 9.46 0.00 0.00 1.75
61 62 1.883275 TCGTGCATGAAAAACCGGATT 59.117 42.857 9.46 0.00 0.00 3.01
62 63 1.529226 TCGTGCATGAAAAACCGGAT 58.471 45.000 9.46 0.00 0.00 4.18
63 64 1.002251 GTTCGTGCATGAAAAACCGGA 60.002 47.619 22.56 0.00 0.00 5.14
64 65 1.001815 AGTTCGTGCATGAAAAACCGG 60.002 47.619 22.56 0.00 0.00 5.28
65 66 2.399396 AGTTCGTGCATGAAAAACCG 57.601 45.000 22.56 2.61 0.00 4.44
66 67 5.038033 TGTTTAGTTCGTGCATGAAAAACC 58.962 37.500 29.09 18.72 31.90 3.27
67 68 6.747659 ATGTTTAGTTCGTGCATGAAAAAC 57.252 33.333 27.29 27.29 32.82 2.43
68 69 7.480229 CGATATGTTTAGTTCGTGCATGAAAAA 59.520 33.333 22.56 16.81 0.00 1.94
69 70 6.958752 CGATATGTTTAGTTCGTGCATGAAAA 59.041 34.615 22.56 11.86 0.00 2.29
70 71 6.311690 TCGATATGTTTAGTTCGTGCATGAAA 59.688 34.615 22.56 5.93 33.52 2.69
71 72 5.808030 TCGATATGTTTAGTTCGTGCATGAA 59.192 36.000 17.41 17.41 33.52 2.57
72 73 5.344884 TCGATATGTTTAGTTCGTGCATGA 58.655 37.500 3.97 3.97 33.52 3.07
73 74 5.635549 TCGATATGTTTAGTTCGTGCATG 57.364 39.130 0.00 0.00 33.52 4.06
74 75 6.656314 TTTCGATATGTTTAGTTCGTGCAT 57.344 33.333 0.00 0.00 33.52 3.96
75 76 6.656314 ATTTCGATATGTTTAGTTCGTGCA 57.344 33.333 0.00 0.00 33.52 4.57
76 77 8.057812 TCTATTTCGATATGTTTAGTTCGTGC 57.942 34.615 0.00 0.00 33.52 5.34
91 92 9.219603 TCTGACAAAGTGAAAATCTATTTCGAT 57.780 29.630 0.00 0.00 0.00 3.59
92 93 8.601845 TCTGACAAAGTGAAAATCTATTTCGA 57.398 30.769 0.00 0.00 0.00 3.71
93 94 8.712363 TCTCTGACAAAGTGAAAATCTATTTCG 58.288 33.333 0.00 0.00 0.00 3.46
97 98 9.007901 CCTTTCTCTGACAAAGTGAAAATCTAT 57.992 33.333 4.99 0.00 43.94 1.98
98 99 7.445402 CCCTTTCTCTGACAAAGTGAAAATCTA 59.555 37.037 4.99 0.00 43.94 1.98
99 100 6.264067 CCCTTTCTCTGACAAAGTGAAAATCT 59.736 38.462 4.99 0.00 43.94 2.40
100 101 6.039829 ACCCTTTCTCTGACAAAGTGAAAATC 59.960 38.462 4.99 0.00 43.94 2.17
101 102 5.893824 ACCCTTTCTCTGACAAAGTGAAAAT 59.106 36.000 4.99 0.00 43.94 1.82
102 103 5.261216 ACCCTTTCTCTGACAAAGTGAAAA 58.739 37.500 4.99 0.00 43.94 2.29
103 104 4.855340 ACCCTTTCTCTGACAAAGTGAAA 58.145 39.130 4.99 3.44 42.97 2.69
104 105 4.503714 ACCCTTTCTCTGACAAAGTGAA 57.496 40.909 4.99 0.00 36.78 3.18
105 106 4.199310 CAACCCTTTCTCTGACAAAGTGA 58.801 43.478 4.99 0.00 0.00 3.41
106 107 3.243201 GCAACCCTTTCTCTGACAAAGTG 60.243 47.826 4.99 0.00 0.00 3.16
107 108 2.952310 GCAACCCTTTCTCTGACAAAGT 59.048 45.455 4.99 0.00 0.00 2.66
108 109 2.951642 TGCAACCCTTTCTCTGACAAAG 59.048 45.455 0.00 0.00 0.00 2.77
109 110 2.951642 CTGCAACCCTTTCTCTGACAAA 59.048 45.455 0.00 0.00 0.00 2.83
110 111 2.575532 CTGCAACCCTTTCTCTGACAA 58.424 47.619 0.00 0.00 0.00 3.18
111 112 1.815408 GCTGCAACCCTTTCTCTGACA 60.815 52.381 0.00 0.00 0.00 3.58
112 113 0.877743 GCTGCAACCCTTTCTCTGAC 59.122 55.000 0.00 0.00 0.00 3.51
113 114 0.250901 GGCTGCAACCCTTTCTCTGA 60.251 55.000 0.50 0.00 0.00 3.27
114 115 0.538057 TGGCTGCAACCCTTTCTCTG 60.538 55.000 3.10 0.00 0.00 3.35
115 116 0.185901 TTGGCTGCAACCCTTTCTCT 59.814 50.000 3.10 0.00 0.00 3.10
116 117 0.600057 CTTGGCTGCAACCCTTTCTC 59.400 55.000 3.10 0.00 0.00 2.87
117 118 0.185901 TCTTGGCTGCAACCCTTTCT 59.814 50.000 3.10 0.00 0.00 2.52
118 119 1.039856 TTCTTGGCTGCAACCCTTTC 58.960 50.000 3.10 0.00 0.00 2.62
119 120 1.494960 TTTCTTGGCTGCAACCCTTT 58.505 45.000 3.10 0.00 0.00 3.11
120 121 1.720781 ATTTCTTGGCTGCAACCCTT 58.279 45.000 3.10 0.00 0.00 3.95
121 122 1.345415 CAATTTCTTGGCTGCAACCCT 59.655 47.619 3.10 0.00 0.00 4.34
122 123 1.608801 CCAATTTCTTGGCTGCAACCC 60.609 52.381 3.10 0.00 45.28 4.11
123 124 1.799544 CCAATTTCTTGGCTGCAACC 58.200 50.000 0.00 0.00 45.28 3.77
132 133 7.812191 TGAATAAACCGAACATCCAATTTCTTG 59.188 33.333 0.00 0.00 0.00 3.02
133 134 7.891561 TGAATAAACCGAACATCCAATTTCTT 58.108 30.769 0.00 0.00 0.00 2.52
134 135 7.461182 TGAATAAACCGAACATCCAATTTCT 57.539 32.000 0.00 0.00 0.00 2.52
135 136 8.702163 AATGAATAAACCGAACATCCAATTTC 57.298 30.769 0.00 0.00 0.00 2.17
136 137 8.531146 AGAATGAATAAACCGAACATCCAATTT 58.469 29.630 0.00 0.00 0.00 1.82
137 138 8.066612 AGAATGAATAAACCGAACATCCAATT 57.933 30.769 0.00 0.00 0.00 2.32
138 139 7.339212 TGAGAATGAATAAACCGAACATCCAAT 59.661 33.333 0.00 0.00 0.00 3.16
139 140 6.657117 TGAGAATGAATAAACCGAACATCCAA 59.343 34.615 0.00 0.00 0.00 3.53
140 141 6.176896 TGAGAATGAATAAACCGAACATCCA 58.823 36.000 0.00 0.00 0.00 3.41
141 142 6.677781 TGAGAATGAATAAACCGAACATCC 57.322 37.500 0.00 0.00 0.00 3.51
142 143 7.974675 TCTTGAGAATGAATAAACCGAACATC 58.025 34.615 0.00 0.00 0.00 3.06
143 144 7.921786 TCTTGAGAATGAATAAACCGAACAT 57.078 32.000 0.00 0.00 0.00 2.71
144 145 7.606073 TGATCTTGAGAATGAATAAACCGAACA 59.394 33.333 0.00 0.00 0.00 3.18
145 146 7.974675 TGATCTTGAGAATGAATAAACCGAAC 58.025 34.615 0.00 0.00 0.00 3.95
146 147 8.560355 TTGATCTTGAGAATGAATAAACCGAA 57.440 30.769 0.00 0.00 0.00 4.30
147 148 7.824289 ACTTGATCTTGAGAATGAATAAACCGA 59.176 33.333 0.00 0.00 0.00 4.69
148 149 7.978982 ACTTGATCTTGAGAATGAATAAACCG 58.021 34.615 0.00 0.00 0.00 4.44
149 150 9.565213 CAACTTGATCTTGAGAATGAATAAACC 57.435 33.333 0.00 0.00 0.00 3.27
153 154 9.506018 TCAACAACTTGATCTTGAGAATGAATA 57.494 29.630 0.00 0.00 31.00 1.75
154 155 8.400184 TCAACAACTTGATCTTGAGAATGAAT 57.600 30.769 0.00 0.00 31.00 2.57
155 156 7.806409 TCAACAACTTGATCTTGAGAATGAA 57.194 32.000 0.00 0.00 31.00 2.57
156 157 7.094506 CCATCAACAACTTGATCTTGAGAATGA 60.095 37.037 0.00 0.00 44.04 2.57
157 158 7.027760 CCATCAACAACTTGATCTTGAGAATG 58.972 38.462 0.00 1.77 44.04 2.67
158 159 6.944290 TCCATCAACAACTTGATCTTGAGAAT 59.056 34.615 0.00 0.00 44.04 2.40
159 160 6.298361 TCCATCAACAACTTGATCTTGAGAA 58.702 36.000 0.00 0.00 44.04 2.87
160 161 5.868454 TCCATCAACAACTTGATCTTGAGA 58.132 37.500 0.00 0.00 44.04 3.27
161 162 6.754702 ATCCATCAACAACTTGATCTTGAG 57.245 37.500 0.00 0.00 44.04 3.02
162 163 7.528996 AAATCCATCAACAACTTGATCTTGA 57.471 32.000 0.00 0.00 44.04 3.02
163 164 7.756722 GGTAAATCCATCAACAACTTGATCTTG 59.243 37.037 0.00 0.00 44.04 3.02
164 165 7.451255 TGGTAAATCCATCAACAACTTGATCTT 59.549 33.333 0.00 0.00 44.04 2.40
165 166 6.947733 TGGTAAATCCATCAACAACTTGATCT 59.052 34.615 0.00 0.00 44.04 2.75
166 167 7.156876 TGGTAAATCCATCAACAACTTGATC 57.843 36.000 0.00 0.00 44.04 2.92
167 168 7.309990 CCTTGGTAAATCCATCAACAACTTGAT 60.310 37.037 0.00 0.00 46.36 2.57
168 169 6.015519 CCTTGGTAAATCCATCAACAACTTGA 60.016 38.462 0.00 0.00 46.60 3.02
169 170 6.158598 CCTTGGTAAATCCATCAACAACTTG 58.841 40.000 0.00 0.00 46.60 3.16
170 171 5.279456 GCCTTGGTAAATCCATCAACAACTT 60.279 40.000 0.00 0.00 46.60 2.66
171 172 4.220602 GCCTTGGTAAATCCATCAACAACT 59.779 41.667 0.00 0.00 46.60 3.16
172 173 4.494484 GCCTTGGTAAATCCATCAACAAC 58.506 43.478 0.00 0.00 46.60 3.32
173 174 3.513515 GGCCTTGGTAAATCCATCAACAA 59.486 43.478 0.00 0.00 46.60 2.83
174 175 3.096092 GGCCTTGGTAAATCCATCAACA 58.904 45.455 0.00 0.00 46.60 3.33
175 176 3.365472 AGGCCTTGGTAAATCCATCAAC 58.635 45.455 0.00 0.00 46.60 3.18
176 177 3.756082 AGGCCTTGGTAAATCCATCAA 57.244 42.857 0.00 0.00 46.60 2.57
177 178 3.364549 CAAGGCCTTGGTAAATCCATCA 58.635 45.455 34.08 0.00 46.60 3.07
178 179 2.101415 GCAAGGCCTTGGTAAATCCATC 59.899 50.000 39.51 19.54 46.60 3.51
179 180 2.110578 GCAAGGCCTTGGTAAATCCAT 58.889 47.619 39.51 3.21 46.60 3.41
180 181 1.555967 GCAAGGCCTTGGTAAATCCA 58.444 50.000 39.51 0.00 45.60 3.41
181 182 0.824109 GGCAAGGCCTTGGTAAATCC 59.176 55.000 39.51 28.61 46.69 3.01
196 197 6.767524 TTTCTCAAAACTTCTTGTAGGCAA 57.232 33.333 0.00 0.00 0.00 4.52
197 198 6.959639 ATTTCTCAAAACTTCTTGTAGGCA 57.040 33.333 0.00 0.00 0.00 4.75
198 199 9.744468 TTAAATTTCTCAAAACTTCTTGTAGGC 57.256 29.630 0.00 0.00 0.00 3.93
201 202 9.445786 CGCTTAAATTTCTCAAAACTTCTTGTA 57.554 29.630 0.00 0.00 0.00 2.41
202 203 7.973944 ACGCTTAAATTTCTCAAAACTTCTTGT 59.026 29.630 0.00 0.00 0.00 3.16
203 204 8.340230 ACGCTTAAATTTCTCAAAACTTCTTG 57.660 30.769 0.00 0.00 0.00 3.02
208 209 9.827411 GAGATTACGCTTAAATTTCTCAAAACT 57.173 29.630 0.00 0.00 0.00 2.66
209 210 9.607285 TGAGATTACGCTTAAATTTCTCAAAAC 57.393 29.630 10.63 0.00 0.00 2.43
211 212 9.607285 GTTGAGATTACGCTTAAATTTCTCAAA 57.393 29.630 20.35 9.21 41.38 2.69
212 213 8.999431 AGTTGAGATTACGCTTAAATTTCTCAA 58.001 29.630 17.12 17.12 38.74 3.02
213 214 8.547967 AGTTGAGATTACGCTTAAATTTCTCA 57.452 30.769 9.49 9.49 0.00 3.27
214 215 9.267096 CAAGTTGAGATTACGCTTAAATTTCTC 57.733 33.333 0.00 5.53 0.00 2.87
215 216 8.784043 ACAAGTTGAGATTACGCTTAAATTTCT 58.216 29.630 10.54 0.00 0.00 2.52
216 217 8.950403 ACAAGTTGAGATTACGCTTAAATTTC 57.050 30.769 10.54 0.00 0.00 2.17
217 218 8.021396 GGACAAGTTGAGATTACGCTTAAATTT 58.979 33.333 10.54 0.00 0.00 1.82
218 219 7.174253 TGGACAAGTTGAGATTACGCTTAAATT 59.826 33.333 10.54 0.00 0.00 1.82
219 220 6.653320 TGGACAAGTTGAGATTACGCTTAAAT 59.347 34.615 10.54 0.00 0.00 1.40
220 221 5.992829 TGGACAAGTTGAGATTACGCTTAAA 59.007 36.000 10.54 0.00 0.00 1.52
221 222 5.543714 TGGACAAGTTGAGATTACGCTTAA 58.456 37.500 10.54 0.00 0.00 1.85
222 223 5.142061 TGGACAAGTTGAGATTACGCTTA 57.858 39.130 10.54 0.00 0.00 3.09
223 224 4.002906 TGGACAAGTTGAGATTACGCTT 57.997 40.909 10.54 0.00 0.00 4.68
224 225 3.678056 TGGACAAGTTGAGATTACGCT 57.322 42.857 10.54 0.00 0.00 5.07
225 226 4.327854 CTTGGACAAGTTGAGATTACGC 57.672 45.455 10.54 0.00 33.87 4.42
237 238 5.009631 TCCCATAATCACAACTTGGACAAG 58.990 41.667 10.34 10.34 43.79 3.16
238 239 4.991776 TCCCATAATCACAACTTGGACAA 58.008 39.130 0.00 0.00 0.00 3.18
239 240 4.567537 CCTCCCATAATCACAACTTGGACA 60.568 45.833 0.00 0.00 0.00 4.02
240 241 3.947834 CCTCCCATAATCACAACTTGGAC 59.052 47.826 0.00 0.00 0.00 4.02
241 242 3.053693 CCCTCCCATAATCACAACTTGGA 60.054 47.826 0.00 0.00 0.00 3.53
242 243 3.290710 CCCTCCCATAATCACAACTTGG 58.709 50.000 0.00 0.00 0.00 3.61
243 244 3.696051 CACCCTCCCATAATCACAACTTG 59.304 47.826 0.00 0.00 0.00 3.16
244 245 3.333680 ACACCCTCCCATAATCACAACTT 59.666 43.478 0.00 0.00 0.00 2.66
245 246 2.919602 ACACCCTCCCATAATCACAACT 59.080 45.455 0.00 0.00 0.00 3.16
246 247 3.366052 ACACCCTCCCATAATCACAAC 57.634 47.619 0.00 0.00 0.00 3.32
247 248 5.522315 TTAACACCCTCCCATAATCACAA 57.478 39.130 0.00 0.00 0.00 3.33
248 249 5.222151 TGTTTAACACCCTCCCATAATCACA 60.222 40.000 0.00 0.00 0.00 3.58
249 250 5.258051 TGTTTAACACCCTCCCATAATCAC 58.742 41.667 0.00 0.00 0.00 3.06
250 251 5.522315 TGTTTAACACCCTCCCATAATCA 57.478 39.130 0.00 0.00 0.00 2.57
251 252 8.576442 CAATATGTTTAACACCCTCCCATAATC 58.424 37.037 0.00 0.00 0.00 1.75
252 253 7.015195 GCAATATGTTTAACACCCTCCCATAAT 59.985 37.037 0.00 0.00 0.00 1.28
253 254 6.322712 GCAATATGTTTAACACCCTCCCATAA 59.677 38.462 0.00 0.00 0.00 1.90
254 255 5.830991 GCAATATGTTTAACACCCTCCCATA 59.169 40.000 0.00 0.00 0.00 2.74
255 256 4.649218 GCAATATGTTTAACACCCTCCCAT 59.351 41.667 0.00 0.00 0.00 4.00
256 257 4.020543 GCAATATGTTTAACACCCTCCCA 58.979 43.478 0.00 0.00 0.00 4.37
257 258 4.020543 TGCAATATGTTTAACACCCTCCC 58.979 43.478 0.00 0.00 0.00 4.30
258 259 5.652994 TTGCAATATGTTTAACACCCTCC 57.347 39.130 0.00 0.00 0.00 4.30
259 260 7.425606 CCTATTGCAATATGTTTAACACCCTC 58.574 38.462 19.17 0.00 0.00 4.30
260 261 6.183360 GCCTATTGCAATATGTTTAACACCCT 60.183 38.462 19.17 0.00 40.77 4.34
261 262 5.983118 GCCTATTGCAATATGTTTAACACCC 59.017 40.000 19.17 0.00 40.77 4.61
262 263 5.983118 GGCCTATTGCAATATGTTTAACACC 59.017 40.000 19.17 7.81 43.89 4.16
474 477 2.093658 ACCATGTAAACGAGCGGAGAAT 60.094 45.455 0.00 0.00 0.00 2.40
526 530 1.149077 ACATGGCTGGGGTAGGTTTTT 59.851 47.619 0.00 0.00 0.00 1.94
593 599 1.295423 GGTGCGGGTAAGCTTCTCA 59.705 57.895 0.00 0.00 38.13 3.27
640 646 2.031012 CACCTCTCTGTTGCGGCA 59.969 61.111 0.00 0.00 0.00 5.69
647 653 0.542232 AGTAACCCGCACCTCTCTGT 60.542 55.000 0.00 0.00 0.00 3.41
649 655 0.896226 GAAGTAACCCGCACCTCTCT 59.104 55.000 0.00 0.00 0.00 3.10
659 665 0.524180 CGACGTAGCCGAAGTAACCC 60.524 60.000 0.00 0.00 37.88 4.11
698 704 2.768253 TCGTGATGATGAACTTGGCT 57.232 45.000 0.00 0.00 0.00 4.75
725 731 2.436542 TGTTTTCTCCTCTTTCCCGTCA 59.563 45.455 0.00 0.00 0.00 4.35
851 857 4.476410 CAGAGCTCGTGCGGCGTA 62.476 66.667 9.37 0.00 45.42 4.42
897 903 4.884257 GACGCGCGCCCTGGAATA 62.884 66.667 32.58 0.00 0.00 1.75
947 953 4.003788 ACCGACTGCGTCCCCTTG 62.004 66.667 3.65 0.00 35.23 3.61
969 975 0.537188 CTCATGTGGGCGAAGTAGGT 59.463 55.000 0.00 0.00 0.00 3.08
1131 1137 3.534704 AAGTGCCCTGCCCAATGCT 62.535 57.895 0.00 0.00 42.00 3.79
1134 1140 1.909781 CACAAGTGCCCTGCCCAAT 60.910 57.895 0.00 0.00 0.00 3.16
1196 1202 0.172803 GCAGTCGATCTGTAACCGGT 59.827 55.000 0.00 0.00 45.23 5.28
1239 1245 1.244697 TGAGACGAGACTGAGCCACC 61.245 60.000 0.00 0.00 0.00 4.61
1576 1705 0.976641 AGAAAGCTGACCATGTCCGA 59.023 50.000 0.00 0.00 0.00 4.55
1603 1732 2.687200 ACCATAGCCCAGTCGCCA 60.687 61.111 0.00 0.00 0.00 5.69
1610 1739 1.279025 GGGAGGTTCACCATAGCCCA 61.279 60.000 0.00 0.00 38.89 5.36
1658 1787 2.967745 TGAACAATGGGTGGATCACA 57.032 45.000 0.00 0.00 35.86 3.58
1670 1799 2.489329 CAAGTGCTTCGGGATGAACAAT 59.511 45.455 0.00 0.00 31.87 2.71
1785 1914 1.135859 CACCAGAAATGCGCTTGAGAC 60.136 52.381 9.73 0.00 0.00 3.36
1944 2472 1.108776 ATTGCCGAAGTAGCCGTCTA 58.891 50.000 0.00 0.00 0.00 2.59
2016 2605 2.219458 GCATGATGTATGTCAGCTGCT 58.781 47.619 9.47 0.00 39.08 4.24
2018 2607 1.529865 CCGCATGATGTATGTCAGCTG 59.470 52.381 7.63 7.63 39.08 4.24
2033 2622 1.406069 GGTGTCTCTGATTCACCGCAT 60.406 52.381 13.01 0.00 41.37 4.73
2039 2628 2.300152 GACTGTGGGTGTCTCTGATTCA 59.700 50.000 0.00 0.00 0.00 2.57
2136 2755 1.305930 GGTCACCGGCAAATCACCTC 61.306 60.000 0.00 0.00 0.00 3.85
2511 8526 0.602372 TGCGTGCATGCAGTTAGTGA 60.602 50.000 29.30 4.20 40.62 3.41
2608 8644 0.606401 TGAGGTTGTTAGCTGCTGCC 60.606 55.000 13.43 6.67 40.80 4.85
2627 8663 1.376543 GCTGCTGTGTATGCATGTCT 58.623 50.000 10.16 0.00 39.86 3.41
2832 9273 9.751542 GCGATATACTGCCTATACAAAAGATAT 57.248 33.333 0.00 0.00 0.00 1.63
2833 9274 8.745590 TGCGATATACTGCCTATACAAAAGATA 58.254 33.333 0.00 0.00 0.00 1.98
2836 9277 7.331934 ACATGCGATATACTGCCTATACAAAAG 59.668 37.037 0.00 0.00 0.00 2.27
2837 9278 7.158697 ACATGCGATATACTGCCTATACAAAA 58.841 34.615 0.00 0.00 0.00 2.44
2840 9281 5.914898 ACATGCGATATACTGCCTATACA 57.085 39.130 0.00 0.00 0.00 2.29
2841 9282 9.561270 CATATACATGCGATATACTGCCTATAC 57.439 37.037 0.00 0.00 0.00 1.47
2843 9284 8.183104 ACATATACATGCGATATACTGCCTAT 57.817 34.615 0.00 0.00 35.39 2.57
2845 9286 6.471233 ACATATACATGCGATATACTGCCT 57.529 37.500 0.00 0.00 35.39 4.75
2846 9287 6.863645 CCTACATATACATGCGATATACTGCC 59.136 42.308 0.00 0.00 35.39 4.85
2847 9288 7.649057 TCCTACATATACATGCGATATACTGC 58.351 38.462 0.00 0.00 35.39 4.40
2848 9289 9.833182 GATCCTACATATACATGCGATATACTG 57.167 37.037 0.00 0.00 35.39 2.74
2853 9294 9.750125 GAAATGATCCTACATATACATGCGATA 57.250 33.333 0.00 0.00 35.39 2.92
2855 9296 7.041721 GGAAATGATCCTACATATACATGCGA 58.958 38.462 0.00 0.00 45.56 5.10
2871 9312 3.806157 GCGGGGTAAGGTAGGAAATGATC 60.806 52.174 0.00 0.00 0.00 2.92
2872 9313 2.105993 GCGGGGTAAGGTAGGAAATGAT 59.894 50.000 0.00 0.00 0.00 2.45
2874 9315 1.476291 GGCGGGGTAAGGTAGGAAATG 60.476 57.143 0.00 0.00 0.00 2.32
2875 9316 0.841961 GGCGGGGTAAGGTAGGAAAT 59.158 55.000 0.00 0.00 0.00 2.17
2877 9318 0.688749 GAGGCGGGGTAAGGTAGGAA 60.689 60.000 0.00 0.00 0.00 3.36
2881 9322 0.186873 CTAGGAGGCGGGGTAAGGTA 59.813 60.000 0.00 0.00 0.00 3.08
2883 9324 0.690077 AACTAGGAGGCGGGGTAAGG 60.690 60.000 0.00 0.00 0.00 2.69
2885 9326 1.689258 GGTAACTAGGAGGCGGGGTAA 60.689 57.143 0.00 0.00 0.00 2.85
2886 9327 0.106015 GGTAACTAGGAGGCGGGGTA 60.106 60.000 0.00 0.00 0.00 3.69
2887 9328 1.382283 GGTAACTAGGAGGCGGGGT 60.382 63.158 0.00 0.00 0.00 4.95
2888 9329 0.763223 ATGGTAACTAGGAGGCGGGG 60.763 60.000 0.00 0.00 37.61 5.73
2891 9332 4.765856 ACTATACATGGTAACTAGGAGGCG 59.234 45.833 0.00 0.00 37.61 5.52
2892 9333 5.106237 CGACTATACATGGTAACTAGGAGGC 60.106 48.000 0.00 0.00 37.61 4.70
2894 9335 6.372103 CCTCGACTATACATGGTAACTAGGAG 59.628 46.154 0.00 0.00 37.61 3.69
2895 9336 6.236409 CCTCGACTATACATGGTAACTAGGA 58.764 44.000 0.00 0.00 37.61 2.94
2897 9338 5.106237 GGCCTCGACTATACATGGTAACTAG 60.106 48.000 0.00 0.00 37.61 2.57
2898 9339 4.763793 GGCCTCGACTATACATGGTAACTA 59.236 45.833 0.00 0.00 37.61 2.24
2899 9340 3.573110 GGCCTCGACTATACATGGTAACT 59.427 47.826 0.00 0.00 37.61 2.24
2900 9341 3.611057 CGGCCTCGACTATACATGGTAAC 60.611 52.174 0.00 0.00 39.00 2.50
2901 9342 2.555325 CGGCCTCGACTATACATGGTAA 59.445 50.000 0.00 0.00 39.00 2.85
2902 9343 2.156917 CGGCCTCGACTATACATGGTA 58.843 52.381 0.00 0.00 39.00 3.25
2903 9344 0.959553 CGGCCTCGACTATACATGGT 59.040 55.000 0.00 0.00 39.00 3.55
2904 9345 0.959553 ACGGCCTCGACTATACATGG 59.040 55.000 0.00 0.00 40.11 3.66
2906 9347 0.959553 CCACGGCCTCGACTATACAT 59.040 55.000 0.00 0.00 40.11 2.29
2907 9348 1.105167 CCCACGGCCTCGACTATACA 61.105 60.000 0.00 0.00 40.11 2.29
2908 9349 1.658673 CCCACGGCCTCGACTATAC 59.341 63.158 0.00 0.00 40.11 1.47
2910 9351 3.537874 GCCCACGGCCTCGACTAT 61.538 66.667 0.00 0.00 44.06 2.12
2920 9361 0.676466 TTACAATGAGCAGCCCACGG 60.676 55.000 0.00 0.00 0.00 4.94
2922 9363 6.824305 ATATATTTACAATGAGCAGCCCAC 57.176 37.500 0.00 0.00 0.00 4.61
2923 9364 6.593770 CGTATATATTTACAATGAGCAGCCCA 59.406 38.462 4.52 0.00 0.00 5.36
2924 9365 6.594159 ACGTATATATTTACAATGAGCAGCCC 59.406 38.462 4.52 0.00 0.00 5.19
2925 9366 7.456253 CACGTATATATTTACAATGAGCAGCC 58.544 38.462 4.52 0.00 0.00 4.85
2926 9367 6.955963 GCACGTATATATTTACAATGAGCAGC 59.044 38.462 4.52 0.00 0.00 5.25
2928 9369 6.643360 ACGCACGTATATATTTACAATGAGCA 59.357 34.615 0.00 0.00 0.00 4.26
2929 9370 6.948228 CACGCACGTATATATTTACAATGAGC 59.052 38.462 0.00 0.00 0.00 4.26
2930 9371 8.003508 ACACGCACGTATATATTTACAATGAG 57.996 34.615 0.00 5.78 0.00 2.90
2931 9372 7.933728 ACACGCACGTATATATTTACAATGA 57.066 32.000 0.00 0.00 0.00 2.57
2932 9373 9.670180 CATACACGCACGTATATATTTACAATG 57.330 33.333 0.00 3.23 30.83 2.82
2934 9375 7.381678 TGCATACACGCACGTATATATTTACAA 59.618 33.333 0.00 0.00 36.86 2.41
2935 9376 6.862090 TGCATACACGCACGTATATATTTACA 59.138 34.615 0.00 0.00 36.86 2.41
2936 9377 7.268186 TGCATACACGCACGTATATATTTAC 57.732 36.000 0.00 0.00 36.86 2.01
2952 9393 5.070770 TCAATTGATTTGGGTGCATACAC 57.929 39.130 3.38 0.00 38.89 2.90
2953 9394 5.015515 TCTCAATTGATTTGGGTGCATACA 58.984 37.500 8.96 0.00 37.10 2.29
2954 9395 5.126061 ACTCTCAATTGATTTGGGTGCATAC 59.874 40.000 8.96 0.00 37.10 2.39
2955 9396 5.263599 ACTCTCAATTGATTTGGGTGCATA 58.736 37.500 8.96 0.00 37.10 3.14
2956 9397 4.091549 ACTCTCAATTGATTTGGGTGCAT 58.908 39.130 8.96 0.00 37.10 3.96
2958 9399 4.240096 CAACTCTCAATTGATTTGGGTGC 58.760 43.478 8.96 0.00 37.10 5.01
2959 9400 4.240096 GCAACTCTCAATTGATTTGGGTG 58.760 43.478 8.96 9.21 37.10 4.61
2960 9401 3.896888 TGCAACTCTCAATTGATTTGGGT 59.103 39.130 8.96 0.27 37.10 4.51
2962 9403 5.163893 GCAATGCAACTCTCAATTGATTTGG 60.164 40.000 8.96 0.00 35.92 3.28
2963 9404 5.163893 GGCAATGCAACTCTCAATTGATTTG 60.164 40.000 8.96 13.12 36.61 2.32
2964 9405 4.933400 GGCAATGCAACTCTCAATTGATTT 59.067 37.500 8.96 0.01 0.00 2.17
2965 9406 4.020928 TGGCAATGCAACTCTCAATTGATT 60.021 37.500 8.96 0.00 0.00 2.57
2966 9407 3.512329 TGGCAATGCAACTCTCAATTGAT 59.488 39.130 8.96 0.00 0.00 2.57
2967 9408 2.892215 TGGCAATGCAACTCTCAATTGA 59.108 40.909 7.79 8.12 0.00 2.57
2969 9410 4.060205 GTTTGGCAATGCAACTCTCAATT 58.940 39.130 7.79 0.00 0.00 2.32
2970 9411 3.069872 TGTTTGGCAATGCAACTCTCAAT 59.930 39.130 7.79 0.00 0.00 2.57
2971 9412 2.429971 TGTTTGGCAATGCAACTCTCAA 59.570 40.909 7.79 0.00 0.00 3.02
2974 9415 3.756933 ATTGTTTGGCAATGCAACTCT 57.243 38.095 16.35 3.05 45.35 3.24
2976 9417 4.255301 CCATATTGTTTGGCAATGCAACT 58.745 39.130 16.35 10.38 46.40 3.16
2977 9418 4.002316 ACCATATTGTTTGGCAATGCAAC 58.998 39.130 16.35 4.43 46.40 4.17
2979 9420 3.977134 ACCATATTGTTTGGCAATGCA 57.023 38.095 7.79 0.33 46.40 3.96
2980 9421 5.174395 TGTTACCATATTGTTTGGCAATGC 58.826 37.500 0.00 0.00 46.40 3.56
2981 9422 6.397272 ACTGTTACCATATTGTTTGGCAATG 58.603 36.000 0.00 0.00 46.40 2.82
2983 9424 6.412362 AACTGTTACCATATTGTTTGGCAA 57.588 33.333 0.00 0.00 41.89 4.52
2984 9425 6.412362 AAACTGTTACCATATTGTTTGGCA 57.588 33.333 0.00 0.00 37.81 4.92
2985 9426 6.367695 GGAAAACTGTTACCATATTGTTTGGC 59.632 38.462 10.43 0.00 37.81 4.52
2986 9427 7.666623 AGGAAAACTGTTACCATATTGTTTGG 58.333 34.615 15.49 0.00 40.26 3.28
2987 9428 8.356657 TGAGGAAAACTGTTACCATATTGTTTG 58.643 33.333 15.49 0.00 0.00 2.93
2988 9429 8.357402 GTGAGGAAAACTGTTACCATATTGTTT 58.643 33.333 15.49 0.00 0.00 2.83
2989 9430 7.504238 TGTGAGGAAAACTGTTACCATATTGTT 59.496 33.333 15.49 0.00 0.00 2.83
2990 9431 7.001674 TGTGAGGAAAACTGTTACCATATTGT 58.998 34.615 15.49 0.00 0.00 2.71
2992 9433 6.148811 CGTGTGAGGAAAACTGTTACCATATT 59.851 38.462 15.49 0.00 0.00 1.28
2993 9434 5.642063 CGTGTGAGGAAAACTGTTACCATAT 59.358 40.000 15.49 0.16 0.00 1.78
2994 9435 4.992319 CGTGTGAGGAAAACTGTTACCATA 59.008 41.667 15.49 4.89 0.00 2.74
2997 9438 3.460103 TCGTGTGAGGAAAACTGTTACC 58.540 45.455 8.11 8.11 0.00 2.85
3006 9447 2.233922 GGAAGAGGATCGTGTGAGGAAA 59.766 50.000 0.00 0.00 42.67 3.13
3008 9449 1.006043 AGGAAGAGGATCGTGTGAGGA 59.994 52.381 0.00 0.00 42.67 3.71
3015 9456 3.100671 AGCTGTTTAGGAAGAGGATCGT 58.899 45.455 0.00 0.00 42.67 3.73
3016 9457 3.810310 AGCTGTTTAGGAAGAGGATCG 57.190 47.619 0.00 0.00 42.67 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.