Multiple sequence alignment - TraesCS6A01G022800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G022800 chr6A 100.000 3003 0 0 1 3003 11415870 11412868 0.000000e+00 5546
1 TraesCS6A01G022800 chr6A 81.352 858 143 7 1051 1900 11115508 11114660 0.000000e+00 682
2 TraesCS6A01G022800 chrUn 92.146 1235 82 10 1051 2275 71184574 71185803 0.000000e+00 1729
3 TraesCS6A01G022800 chrUn 89.101 734 51 8 1178 1902 71193414 71192701 0.000000e+00 885
4 TraesCS6A01G022800 chrUn 81.002 858 146 7 1051 1900 172237184 172236336 0.000000e+00 665
5 TraesCS6A01G022800 chrUn 96.700 303 10 0 2701 3003 71185818 71186120 3.450000e-139 505
6 TraesCS6A01G022800 chrUn 91.589 321 24 3 683 1003 71184166 71184483 9.880000e-120 440
7 TraesCS6A01G022800 chrUn 88.579 359 33 6 683 1039 71199465 71199113 2.140000e-116 429
8 TraesCS6A01G022800 chrUn 86.577 298 25 5 2707 2996 471500031 471500321 6.250000e-82 315
9 TraesCS6A01G022800 chr7A 98.383 433 6 1 2276 2708 67589374 67588943 0.000000e+00 760
10 TraesCS6A01G022800 chr7A 96.270 429 16 0 2280 2708 3276527 3276955 0.000000e+00 704
11 TraesCS6A01G022800 chr7A 94.866 448 19 4 2263 2708 624936809 624936364 0.000000e+00 697
12 TraesCS6A01G022800 chr7A 94.040 453 23 4 2256 2708 686011989 686012437 0.000000e+00 684
13 TraesCS6A01G022800 chr3A 96.767 433 14 0 2276 2708 738856952 738857384 0.000000e+00 723
14 TraesCS6A01G022800 chr3A 95.100 449 18 4 2263 2708 739376093 739375646 0.000000e+00 704
15 TraesCS6A01G022800 chr5A 96.744 430 13 1 2280 2708 3445898 3446327 0.000000e+00 715
16 TraesCS6A01G022800 chr5A 95.475 442 18 2 2267 2708 483390096 483389657 0.000000e+00 704
17 TraesCS6A01G022800 chr1A 95.516 446 18 2 2263 2708 20440286 20440729 0.000000e+00 712
18 TraesCS6A01G022800 chr7D 87.687 601 69 5 4 599 532604115 532603515 0.000000e+00 695
19 TraesCS6A01G022800 chr7D 82.045 401 66 6 240 637 605664436 605664833 1.330000e-88 337
20 TraesCS6A01G022800 chr7D 83.815 173 26 2 685 856 6750538 6750709 2.400000e-36 163
21 TraesCS6A01G022800 chr2D 85.299 653 93 3 1 651 187524235 187523584 0.000000e+00 671
22 TraesCS6A01G022800 chr4A 86.621 441 56 3 1 440 86929786 86930224 4.500000e-133 484
23 TraesCS6A01G022800 chr6B 80.438 639 112 9 5 639 656545357 656544728 2.710000e-130 475
24 TraesCS6A01G022800 chr6D 87.454 271 34 0 10 280 3970803 3970533 2.250000e-81 313
25 TraesCS6A01G022800 chr6D 84.259 324 21 6 1962 2275 9908810 9908507 3.790000e-74 289
26 TraesCS6A01G022800 chr6D 80.827 266 51 0 1 266 353102069 353101804 3.030000e-50 209
27 TraesCS6A01G022800 chr2B 83.810 315 48 1 1 315 424494245 424494556 2.260000e-76 296
28 TraesCS6A01G022800 chr7B 81.765 170 31 0 1 170 490497096 490496927 3.120000e-30 143
29 TraesCS6A01G022800 chr3D 77.033 209 41 6 1 207 346850524 346850727 2.450000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G022800 chr6A 11412868 11415870 3002 True 5546.000000 5546 100.000000 1 3003 1 chr6A.!!$R2 3002
1 TraesCS6A01G022800 chr6A 11114660 11115508 848 True 682.000000 682 81.352000 1051 1900 1 chr6A.!!$R1 849
2 TraesCS6A01G022800 chrUn 71184166 71186120 1954 False 891.333333 1729 93.478333 683 3003 3 chrUn.!!$F2 2320
3 TraesCS6A01G022800 chrUn 71192701 71193414 713 True 885.000000 885 89.101000 1178 1902 1 chrUn.!!$R1 724
4 TraesCS6A01G022800 chrUn 172236336 172237184 848 True 665.000000 665 81.002000 1051 1900 1 chrUn.!!$R3 849
5 TraesCS6A01G022800 chr7D 532603515 532604115 600 True 695.000000 695 87.687000 4 599 1 chr7D.!!$R1 595
6 TraesCS6A01G022800 chr2D 187523584 187524235 651 True 671.000000 671 85.299000 1 651 1 chr2D.!!$R1 650
7 TraesCS6A01G022800 chr6B 656544728 656545357 629 True 475.000000 475 80.438000 5 639 1 chr6B.!!$R1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
776 784 0.322648 GCAAGGGCATGCTTTTCCTT 59.677 50.0 18.92 17.99 43.06 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2600 2661 0.029567 GTCGCTACTCACTCCGATGG 59.97 60.0 0.0 0.0 31.96 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.710722 CGCCCTCCTGAAGCCACT 61.711 66.667 0.00 0.00 0.00 4.00
118 119 4.041321 CAGATATCCTTGGGCAAGATCTCA 59.959 45.833 0.00 0.00 40.79 3.27
145 146 0.871163 GTTCCGGAACACGTCGACAA 60.871 55.000 36.67 0.63 42.24 3.18
148 149 1.299620 CGGAACACGTCGACAACCT 60.300 57.895 17.16 0.00 37.93 3.50
171 172 3.459232 TCGAAAAGGATCGATCATGCT 57.541 42.857 25.93 11.85 46.12 3.79
172 173 4.584327 TCGAAAAGGATCGATCATGCTA 57.416 40.909 25.93 3.28 46.12 3.49
177 178 2.886081 AGGATCGATCATGCTAATCGC 58.114 47.619 25.93 5.40 44.32 4.58
178 179 1.585668 GGATCGATCATGCTAATCGCG 59.414 52.381 25.93 0.00 44.32 5.87
179 180 2.254459 GATCGATCATGCTAATCGCGT 58.746 47.619 20.52 2.68 44.32 6.01
189 190 0.869880 CTAATCGCGTCCGTGATGCA 60.870 55.000 15.58 6.98 43.95 3.96
192 193 4.483683 CGCGTCCGTGATGCAACG 62.484 66.667 15.39 3.92 43.95 4.10
217 218 1.225983 CAAGGACCACCACCACACA 59.774 57.895 0.00 0.00 38.94 3.72
244 245 1.623311 TCCATCACGTTGACACCATCT 59.377 47.619 0.00 0.00 0.00 2.90
263 264 2.573869 CGCCACGACAGAGGACAT 59.426 61.111 0.00 0.00 0.00 3.06
280 281 4.804420 TCGGCCCTCCCTGCTCAT 62.804 66.667 0.00 0.00 0.00 2.90
282 283 2.876945 CGGCCCTCCCTGCTCATAG 61.877 68.421 0.00 0.00 0.00 2.23
297 298 2.058595 ATAGCCCGCGACTCCAAGT 61.059 57.895 8.23 0.00 0.00 3.16
323 324 1.227823 CTGACGGAACTGGCACCAA 60.228 57.895 0.00 0.00 0.00 3.67
326 327 2.983592 CGGAACTGGCACCAACCC 60.984 66.667 0.00 0.00 0.00 4.11
419 420 4.653888 CCCAAGGCCCGTCCGTTT 62.654 66.667 0.00 0.00 40.77 3.60
491 492 4.203076 GTCCCGCGTCGTAGCCAT 62.203 66.667 4.92 0.00 0.00 4.40
521 524 3.878667 GATAAGGGCCCCGCTGCT 61.879 66.667 21.43 0.00 0.00 4.24
618 626 2.669240 GTGGCGGCTAGGGTTTCT 59.331 61.111 11.43 0.00 0.00 2.52
671 679 2.727103 CAAAGTCCTTTTGCCCGGA 58.273 52.632 0.73 0.00 39.71 5.14
672 680 0.598065 CAAAGTCCTTTTGCCCGGAG 59.402 55.000 0.73 0.00 39.71 4.63
673 681 1.179174 AAAGTCCTTTTGCCCGGAGC 61.179 55.000 0.73 5.29 44.14 4.70
674 682 3.062466 GTCCTTTTGCCCGGAGCC 61.062 66.667 0.73 0.00 42.71 4.70
675 683 3.575247 TCCTTTTGCCCGGAGCCA 61.575 61.111 0.73 0.00 42.71 4.75
676 684 3.064324 CCTTTTGCCCGGAGCCAG 61.064 66.667 0.73 1.13 42.71 4.85
677 685 3.064324 CTTTTGCCCGGAGCCAGG 61.064 66.667 0.73 0.00 42.71 4.45
678 686 3.567579 CTTTTGCCCGGAGCCAGGA 62.568 63.158 0.73 0.00 42.71 3.86
679 687 3.567579 TTTTGCCCGGAGCCAGGAG 62.568 63.158 0.73 0.00 42.71 3.69
691 699 2.045536 CAGGAGCTCCCTTGTGGC 60.046 66.667 29.54 1.26 44.85 5.01
747 755 2.822764 CCAACGGCAGGTTAGAGATAC 58.177 52.381 0.00 0.00 36.49 2.24
768 776 2.433664 GCAACAGCAAGGGCATGC 60.434 61.111 9.90 9.90 46.78 4.06
776 784 0.322648 GCAAGGGCATGCTTTTCCTT 59.677 50.000 18.92 17.99 43.06 3.36
783 791 1.545582 GCATGCTTTTCCTTGTGGCTA 59.454 47.619 11.37 0.00 0.00 3.93
791 799 0.621571 TCCTTGTGGCTAGCTCCCAT 60.622 55.000 15.72 0.00 34.34 4.00
794 802 0.833287 TTGTGGCTAGCTCCCATCTC 59.167 55.000 15.72 0.00 34.34 2.75
800 808 1.270732 GCTAGCTCCCATCTCACCATG 60.271 57.143 7.70 0.00 0.00 3.66
821 829 3.678072 TGGACGACTTTAGCGATTTGAAG 59.322 43.478 0.00 0.00 0.00 3.02
822 830 3.678548 GGACGACTTTAGCGATTTGAAGT 59.321 43.478 0.00 0.00 35.22 3.01
867 875 2.673775 TGTTCCCCAAATGCTCTCAA 57.326 45.000 0.00 0.00 0.00 3.02
874 882 1.471684 CCAAATGCTCTCAACTGAGGC 59.528 52.381 6.87 9.39 42.30 4.70
901 909 1.625315 CACCCAGGTCAGTCTGATTCA 59.375 52.381 5.68 0.00 36.93 2.57
905 913 3.708631 CCCAGGTCAGTCTGATTCATACT 59.291 47.826 5.68 0.00 36.93 2.12
913 921 8.254508 GGTCAGTCTGATTCATACTTAAAGAGT 58.745 37.037 5.68 0.00 42.55 3.24
915 923 9.645059 TCAGTCTGATTCATACTTAAAGAGTTG 57.355 33.333 0.00 0.00 39.86 3.16
916 924 9.429359 CAGTCTGATTCATACTTAAAGAGTTGT 57.571 33.333 2.17 0.00 39.86 3.32
1024 1032 8.239314 ACATACATGCATATAATTACAAGCAGC 58.761 33.333 0.00 0.00 35.26 5.25
1025 1033 6.889301 ACATGCATATAATTACAAGCAGCT 57.111 33.333 0.00 0.00 35.26 4.24
1026 1034 7.984422 ACATGCATATAATTACAAGCAGCTA 57.016 32.000 0.00 0.00 35.26 3.32
1027 1035 8.037382 ACATGCATATAATTACAAGCAGCTAG 57.963 34.615 0.00 0.00 35.26 3.42
1028 1036 7.663081 ACATGCATATAATTACAAGCAGCTAGT 59.337 33.333 0.00 0.00 35.26 2.57
1030 1038 9.725019 ATGCATATAATTACAAGCAGCTAGTAA 57.275 29.630 0.00 0.00 35.26 2.24
1039 1056 8.867112 TTACAAGCAGCTAGTAATATGTGTAC 57.133 34.615 0.00 0.00 0.00 2.90
1040 1057 7.113658 ACAAGCAGCTAGTAATATGTGTACT 57.886 36.000 0.00 0.00 35.90 2.73
1041 1058 6.980978 ACAAGCAGCTAGTAATATGTGTACTG 59.019 38.462 0.00 0.00 33.80 2.74
1048 1065 7.085116 GCTAGTAATATGTGTACTGGCTACTG 58.915 42.308 11.94 0.00 46.69 2.74
1049 1066 6.406692 AGTAATATGTGTACTGGCTACTGG 57.593 41.667 0.00 0.00 30.52 4.00
1050 1067 4.689612 AATATGTGTACTGGCTACTGGG 57.310 45.455 0.00 0.00 0.00 4.45
1093 1144 0.878523 TGCCACGTTCCACTTCTTCG 60.879 55.000 0.00 0.00 0.00 3.79
1095 1146 1.860676 CCACGTTCCACTTCTTCGAA 58.139 50.000 0.00 0.00 0.00 3.71
1110 1161 5.828299 TCTTCGAAACATGGTCAACTTTT 57.172 34.783 0.00 0.00 0.00 2.27
1151 1202 1.273838 TGTGATGAAGCTCCCCTACCT 60.274 52.381 0.00 0.00 0.00 3.08
1164 1215 1.079127 CTACCTTGACCGCACCCAG 60.079 63.158 0.00 0.00 0.00 4.45
1175 1227 2.587753 CACCCAGTTGTGTCGCGT 60.588 61.111 5.77 0.00 0.00 6.01
1176 1228 2.587753 ACCCAGTTGTGTCGCGTG 60.588 61.111 5.77 0.00 0.00 5.34
1239 1294 0.394565 AGATCAACCTATCGCAGCCC 59.605 55.000 0.00 0.00 0.00 5.19
1273 1328 2.721425 AACGAGGTTTTCACCCTTGA 57.279 45.000 0.73 0.00 45.63 3.02
1274 1329 2.256117 ACGAGGTTTTCACCCTTGAG 57.744 50.000 0.73 0.00 45.63 3.02
1300 1355 1.214175 TCAACTTTCCACCCTCAAGCA 59.786 47.619 0.00 0.00 0.00 3.91
1301 1356 2.158475 TCAACTTTCCACCCTCAAGCAT 60.158 45.455 0.00 0.00 0.00 3.79
1307 1362 2.763039 TCCACCCTCAAGCATATCTGA 58.237 47.619 0.00 0.00 0.00 3.27
1379 1434 1.807226 CATGTGTCTAGCCCGACGA 59.193 57.895 0.00 0.00 36.71 4.20
1396 1451 0.324943 CGACTCCCACCAAACTCCAT 59.675 55.000 0.00 0.00 0.00 3.41
1403 1458 2.364632 CCACCAAACTCCATAATGCGA 58.635 47.619 0.00 0.00 0.00 5.10
1490 1545 2.407361 CGTGGTGATAAACGTCAGTGTC 59.593 50.000 0.00 0.00 35.13 3.67
1682 1737 1.547820 GACATGAGAGTGGTCAGCTGA 59.452 52.381 13.74 13.74 0.00 4.26
1918 1977 1.630148 CCGGAGCTAGTGTTTTCTCG 58.370 55.000 0.00 0.00 0.00 4.04
1923 1982 0.796927 GCTAGTGTTTTCTCGCACCC 59.203 55.000 0.00 0.00 36.35 4.61
1932 1991 2.434359 CTCGCACCCCCGTTTCTC 60.434 66.667 0.00 0.00 0.00 2.87
1945 2004 3.303132 CCCGTTTCTCTTTGTGTTCTTCG 60.303 47.826 0.00 0.00 0.00 3.79
1950 2009 3.123804 TCTCTTTGTGTTCTTCGAGCAC 58.876 45.455 4.22 4.22 42.61 4.40
1972 2031 4.527509 CTCATATGTGCCGAGGACTATT 57.472 45.455 1.90 0.00 0.00 1.73
1973 2032 5.644977 CTCATATGTGCCGAGGACTATTA 57.355 43.478 1.90 0.00 0.00 0.98
2039 2098 5.841957 AGATCAAATAGTTTGCATGTCCC 57.158 39.130 0.00 0.00 40.43 4.46
2040 2099 5.263599 AGATCAAATAGTTTGCATGTCCCA 58.736 37.500 0.00 0.00 40.43 4.37
2045 2104 5.435686 AATAGTTTGCATGTCCCAGAGTA 57.564 39.130 0.00 0.00 0.00 2.59
2071 2132 4.024048 AGTGACACGGATGTTTGATGTTTC 60.024 41.667 0.00 0.00 39.95 2.78
2117 2178 9.700831 ACCCTGATTAATAATCTTAAGCAACTT 57.299 29.630 13.45 0.00 38.72 2.66
2147 2208 6.750148 AGGCTTATCCTAGTGAATTTACTCG 58.250 40.000 6.09 0.38 45.41 4.18
2149 2210 6.985059 GGCTTATCCTAGTGAATTTACTCGTT 59.015 38.462 6.09 0.00 32.19 3.85
2150 2211 7.169476 GGCTTATCCTAGTGAATTTACTCGTTC 59.831 40.741 6.09 0.00 32.19 3.95
2151 2212 7.921745 GCTTATCCTAGTGAATTTACTCGTTCT 59.078 37.037 6.09 0.00 32.19 3.01
2186 2247 2.093106 AGTAGAGTAGTTGCTCGTGGG 58.907 52.381 0.00 0.00 40.26 4.61
2206 2267 1.128692 GCTGCTCGATTTGTTTAGCGT 59.871 47.619 0.00 0.00 37.80 5.07
2313 2374 4.804420 TCTCCCCGGCCTCTGCAT 62.804 66.667 0.00 0.00 40.13 3.96
2314 2375 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
2316 2377 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
2317 2378 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
2318 2379 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
2319 2380 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
2320 2381 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
2321 2382 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
2322 2383 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
2331 2392 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
2332 2393 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
2333 2394 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
2334 2395 0.106708 AGAACGATGCATACGGCCAT 59.893 50.000 18.34 0.00 43.89 4.40
2335 2396 0.512952 GAACGATGCATACGGCCATC 59.487 55.000 18.34 0.00 43.89 3.51
2336 2397 0.106708 AACGATGCATACGGCCATCT 59.893 50.000 18.34 0.00 43.89 2.90
2337 2398 0.106708 ACGATGCATACGGCCATCTT 59.893 50.000 18.34 0.00 43.89 2.40
2338 2399 1.343142 ACGATGCATACGGCCATCTTA 59.657 47.619 18.34 0.00 43.89 2.10
2339 2400 2.028112 ACGATGCATACGGCCATCTTAT 60.028 45.455 18.34 0.00 43.89 1.73
2340 2401 3.002791 CGATGCATACGGCCATCTTATT 58.997 45.455 2.24 0.00 43.89 1.40
2341 2402 4.180817 CGATGCATACGGCCATCTTATTA 58.819 43.478 2.24 0.00 43.89 0.98
2342 2403 4.629634 CGATGCATACGGCCATCTTATTAA 59.370 41.667 2.24 0.00 43.89 1.40
2343 2404 5.445939 CGATGCATACGGCCATCTTATTAAC 60.446 44.000 2.24 0.00 43.89 2.01
2344 2405 4.069304 TGCATACGGCCATCTTATTAACC 58.931 43.478 2.24 0.00 43.89 2.85
2345 2406 4.069304 GCATACGGCCATCTTATTAACCA 58.931 43.478 2.24 0.00 36.11 3.67
2346 2407 4.517453 GCATACGGCCATCTTATTAACCAA 59.483 41.667 2.24 0.00 36.11 3.67
2347 2408 5.009210 GCATACGGCCATCTTATTAACCAAA 59.991 40.000 2.24 0.00 36.11 3.28
2348 2409 6.294508 GCATACGGCCATCTTATTAACCAAAT 60.295 38.462 2.24 0.00 36.11 2.32
2349 2410 7.094549 GCATACGGCCATCTTATTAACCAAATA 60.095 37.037 2.24 0.00 36.11 1.40
2350 2411 8.788806 CATACGGCCATCTTATTAACCAAATAA 58.211 33.333 2.24 0.00 37.64 1.40
2351 2412 7.034685 ACGGCCATCTTATTAACCAAATAAC 57.965 36.000 2.24 0.00 35.55 1.89
2352 2413 6.603997 ACGGCCATCTTATTAACCAAATAACA 59.396 34.615 2.24 0.00 35.55 2.41
2353 2414 7.122948 ACGGCCATCTTATTAACCAAATAACAA 59.877 33.333 2.24 0.00 35.55 2.83
2354 2415 7.976734 CGGCCATCTTATTAACCAAATAACAAA 59.023 33.333 2.24 0.00 35.55 2.83
2355 2416 9.660180 GGCCATCTTATTAACCAAATAACAAAA 57.340 29.630 0.00 0.00 35.55 2.44
2360 2421 9.699703 TCTTATTAACCAAATAACAAAAGGTGC 57.300 29.630 0.00 0.00 35.55 5.01
2361 2422 8.834749 TTATTAACCAAATAACAAAAGGTGCC 57.165 30.769 0.00 0.00 35.55 5.01
2362 2423 4.762289 AACCAAATAACAAAAGGTGCCA 57.238 36.364 0.00 0.00 31.86 4.92
2363 2424 4.762289 ACCAAATAACAAAAGGTGCCAA 57.238 36.364 0.00 0.00 0.00 4.52
2364 2425 4.447290 ACCAAATAACAAAAGGTGCCAAC 58.553 39.130 0.00 0.00 0.00 3.77
2365 2426 4.080863 ACCAAATAACAAAAGGTGCCAACA 60.081 37.500 0.00 0.00 0.00 3.33
2366 2427 4.878397 CCAAATAACAAAAGGTGCCAACAA 59.122 37.500 0.00 0.00 0.00 2.83
2367 2428 5.007528 CCAAATAACAAAAGGTGCCAACAAG 59.992 40.000 0.00 0.00 0.00 3.16
2368 2429 2.689553 AACAAAAGGTGCCAACAAGG 57.310 45.000 0.00 0.00 41.84 3.61
2369 2430 1.567357 ACAAAAGGTGCCAACAAGGT 58.433 45.000 0.00 0.00 40.61 3.50
2370 2431 1.905894 ACAAAAGGTGCCAACAAGGTT 59.094 42.857 0.00 0.00 40.61 3.50
2371 2432 2.093711 ACAAAAGGTGCCAACAAGGTTC 60.094 45.455 0.00 0.00 40.61 3.62
2372 2433 1.119684 AAAGGTGCCAACAAGGTTCC 58.880 50.000 0.00 0.00 40.61 3.62
2373 2434 0.032615 AAGGTGCCAACAAGGTTCCA 60.033 50.000 0.00 0.00 40.61 3.53
2374 2435 0.755327 AGGTGCCAACAAGGTTCCAC 60.755 55.000 0.00 0.00 40.61 4.02
2375 2436 1.040339 GGTGCCAACAAGGTTCCACA 61.040 55.000 9.95 0.00 40.61 4.17
2376 2437 0.385390 GTGCCAACAAGGTTCCACAG 59.615 55.000 0.00 0.00 40.61 3.66
2377 2438 0.033601 TGCCAACAAGGTTCCACAGT 60.034 50.000 0.00 0.00 40.61 3.55
2378 2439 0.668535 GCCAACAAGGTTCCACAGTC 59.331 55.000 0.00 0.00 40.61 3.51
2379 2440 1.750682 GCCAACAAGGTTCCACAGTCT 60.751 52.381 0.00 0.00 40.61 3.24
2380 2441 2.222027 CCAACAAGGTTCCACAGTCTC 58.778 52.381 0.00 0.00 0.00 3.36
2381 2442 2.222027 CAACAAGGTTCCACAGTCTCC 58.778 52.381 0.00 0.00 0.00 3.71
2382 2443 1.507140 ACAAGGTTCCACAGTCTCCA 58.493 50.000 0.00 0.00 0.00 3.86
2383 2444 1.417890 ACAAGGTTCCACAGTCTCCAG 59.582 52.381 0.00 0.00 0.00 3.86
2384 2445 0.398318 AAGGTTCCACAGTCTCCAGC 59.602 55.000 0.00 0.00 0.00 4.85
2385 2446 1.003233 GGTTCCACAGTCTCCAGCC 60.003 63.158 0.00 0.00 0.00 4.85
2386 2447 1.754745 GTTCCACAGTCTCCAGCCA 59.245 57.895 0.00 0.00 0.00 4.75
2387 2448 0.108585 GTTCCACAGTCTCCAGCCAA 59.891 55.000 0.00 0.00 0.00 4.52
2388 2449 0.843309 TTCCACAGTCTCCAGCCAAA 59.157 50.000 0.00 0.00 0.00 3.28
2389 2450 0.108585 TCCACAGTCTCCAGCCAAAC 59.891 55.000 0.00 0.00 0.00 2.93
2390 2451 1.230635 CCACAGTCTCCAGCCAAACG 61.231 60.000 0.00 0.00 0.00 3.60
2391 2452 0.249868 CACAGTCTCCAGCCAAACGA 60.250 55.000 0.00 0.00 0.00 3.85
2392 2453 0.468226 ACAGTCTCCAGCCAAACGAA 59.532 50.000 0.00 0.00 0.00 3.85
2393 2454 1.134220 ACAGTCTCCAGCCAAACGAAA 60.134 47.619 0.00 0.00 0.00 3.46
2394 2455 1.946768 CAGTCTCCAGCCAAACGAAAA 59.053 47.619 0.00 0.00 0.00 2.29
2395 2456 2.031682 CAGTCTCCAGCCAAACGAAAAG 60.032 50.000 0.00 0.00 0.00 2.27
2396 2457 0.951558 TCTCCAGCCAAACGAAAAGC 59.048 50.000 0.00 0.00 0.00 3.51
2397 2458 0.667993 CTCCAGCCAAACGAAAAGCA 59.332 50.000 0.00 0.00 0.00 3.91
2398 2459 1.066908 CTCCAGCCAAACGAAAAGCAA 59.933 47.619 0.00 0.00 0.00 3.91
2399 2460 1.478510 TCCAGCCAAACGAAAAGCAAA 59.521 42.857 0.00 0.00 0.00 3.68
2400 2461 1.860326 CCAGCCAAACGAAAAGCAAAG 59.140 47.619 0.00 0.00 0.00 2.77
2401 2462 1.860326 CAGCCAAACGAAAAGCAAAGG 59.140 47.619 0.00 0.00 0.00 3.11
2402 2463 1.754226 AGCCAAACGAAAAGCAAAGGA 59.246 42.857 0.00 0.00 0.00 3.36
2403 2464 2.365293 AGCCAAACGAAAAGCAAAGGAT 59.635 40.909 0.00 0.00 0.00 3.24
2404 2465 3.572255 AGCCAAACGAAAAGCAAAGGATA 59.428 39.130 0.00 0.00 0.00 2.59
2405 2466 4.038642 AGCCAAACGAAAAGCAAAGGATAA 59.961 37.500 0.00 0.00 0.00 1.75
2406 2467 4.747605 GCCAAACGAAAAGCAAAGGATAAA 59.252 37.500 0.00 0.00 0.00 1.40
2407 2468 5.408299 GCCAAACGAAAAGCAAAGGATAAAT 59.592 36.000 0.00 0.00 0.00 1.40
2408 2469 6.618379 GCCAAACGAAAAGCAAAGGATAAATG 60.618 38.462 0.00 0.00 0.00 2.32
2409 2470 6.298853 CAAACGAAAAGCAAAGGATAAATGC 58.701 36.000 0.00 0.00 40.34 3.56
2410 2471 4.494484 ACGAAAAGCAAAGGATAAATGCC 58.506 39.130 0.00 0.00 40.93 4.40
2411 2472 3.547468 CGAAAAGCAAAGGATAAATGCCG 59.453 43.478 0.00 0.00 40.93 5.69
2412 2473 2.584492 AAGCAAAGGATAAATGCCGC 57.416 45.000 0.00 0.00 40.93 6.53
2413 2474 1.767759 AGCAAAGGATAAATGCCGCT 58.232 45.000 0.00 0.00 40.93 5.52
2414 2475 1.678101 AGCAAAGGATAAATGCCGCTC 59.322 47.619 0.00 0.00 40.93 5.03
2415 2476 1.405105 GCAAAGGATAAATGCCGCTCA 59.595 47.619 0.00 0.00 34.03 4.26
2416 2477 2.796032 GCAAAGGATAAATGCCGCTCAC 60.796 50.000 0.00 0.00 34.03 3.51
2417 2478 2.418368 AAGGATAAATGCCGCTCACA 57.582 45.000 0.00 0.00 0.00 3.58
2418 2479 1.668419 AGGATAAATGCCGCTCACAC 58.332 50.000 0.00 0.00 0.00 3.82
2419 2480 1.065491 AGGATAAATGCCGCTCACACA 60.065 47.619 0.00 0.00 0.00 3.72
2420 2481 1.331756 GGATAAATGCCGCTCACACAG 59.668 52.381 0.00 0.00 0.00 3.66
2421 2482 2.279741 GATAAATGCCGCTCACACAGA 58.720 47.619 0.00 0.00 0.00 3.41
2429 2490 4.567435 CTCACACAGAGCGACAGG 57.433 61.111 0.00 0.00 37.59 4.00
2430 2491 1.735920 CTCACACAGAGCGACAGGC 60.736 63.158 0.00 0.00 44.05 4.85
2439 2500 3.039988 GCGACAGGCGGCTAGATA 58.960 61.111 12.74 0.00 41.29 1.98
2440 2501 1.371881 GCGACAGGCGGCTAGATAC 60.372 63.158 12.74 0.56 41.29 2.24
2441 2502 2.030551 CGACAGGCGGCTAGATACA 58.969 57.895 12.74 0.00 36.03 2.29
2442 2503 0.039978 CGACAGGCGGCTAGATACAG 60.040 60.000 12.74 0.00 36.03 2.74
2443 2504 1.319541 GACAGGCGGCTAGATACAGA 58.680 55.000 12.74 0.00 0.00 3.41
2444 2505 1.268352 GACAGGCGGCTAGATACAGAG 59.732 57.143 12.74 0.00 0.00 3.35
2445 2506 1.133761 ACAGGCGGCTAGATACAGAGA 60.134 52.381 12.74 0.00 0.00 3.10
2446 2507 1.268352 CAGGCGGCTAGATACAGAGAC 59.732 57.143 12.74 0.00 0.00 3.36
2447 2508 1.144093 AGGCGGCTAGATACAGAGACT 59.856 52.381 11.03 0.00 0.00 3.24
2448 2509 2.372504 AGGCGGCTAGATACAGAGACTA 59.627 50.000 11.03 0.00 0.00 2.59
2449 2510 2.745281 GGCGGCTAGATACAGAGACTAG 59.255 54.545 0.00 0.00 37.32 2.57
2454 2515 4.274602 CTAGATACAGAGACTAGCCGGA 57.725 50.000 5.05 0.00 0.00 5.14
2455 2516 3.579534 AGATACAGAGACTAGCCGGAA 57.420 47.619 5.05 0.00 0.00 4.30
2456 2517 3.899726 AGATACAGAGACTAGCCGGAAA 58.100 45.455 5.05 0.00 0.00 3.13
2457 2518 4.279145 AGATACAGAGACTAGCCGGAAAA 58.721 43.478 5.05 0.00 0.00 2.29
2458 2519 4.710375 AGATACAGAGACTAGCCGGAAAAA 59.290 41.667 5.05 0.00 0.00 1.94
2459 2520 3.320673 ACAGAGACTAGCCGGAAAAAG 57.679 47.619 5.05 0.00 0.00 2.27
2460 2521 2.897969 ACAGAGACTAGCCGGAAAAAGA 59.102 45.455 5.05 0.00 0.00 2.52
2461 2522 3.515901 ACAGAGACTAGCCGGAAAAAGAT 59.484 43.478 5.05 0.00 0.00 2.40
2462 2523 3.868077 CAGAGACTAGCCGGAAAAAGATG 59.132 47.826 5.05 0.00 0.00 2.90
2463 2524 2.609916 GAGACTAGCCGGAAAAAGATGC 59.390 50.000 5.05 0.00 0.00 3.91
2464 2525 1.671328 GACTAGCCGGAAAAAGATGCC 59.329 52.381 5.05 0.00 0.00 4.40
2465 2526 1.004277 ACTAGCCGGAAAAAGATGCCA 59.996 47.619 5.05 0.00 0.00 4.92
2466 2527 1.401905 CTAGCCGGAAAAAGATGCCAC 59.598 52.381 5.05 0.00 0.00 5.01
2467 2528 0.539438 AGCCGGAAAAAGATGCCACA 60.539 50.000 5.05 0.00 0.00 4.17
2468 2529 0.316841 GCCGGAAAAAGATGCCACAA 59.683 50.000 5.05 0.00 0.00 3.33
2469 2530 1.934849 GCCGGAAAAAGATGCCACAAC 60.935 52.381 5.05 0.00 0.00 3.32
2470 2531 1.336795 CCGGAAAAAGATGCCACAACC 60.337 52.381 0.00 0.00 0.00 3.77
2471 2532 1.339610 CGGAAAAAGATGCCACAACCA 59.660 47.619 0.00 0.00 0.00 3.67
2472 2533 2.607771 CGGAAAAAGATGCCACAACCAG 60.608 50.000 0.00 0.00 0.00 4.00
2473 2534 2.407090 GAAAAAGATGCCACAACCAGC 58.593 47.619 0.00 0.00 0.00 4.85
2474 2535 1.708341 AAAAGATGCCACAACCAGCT 58.292 45.000 0.00 0.00 0.00 4.24
2475 2536 0.963962 AAAGATGCCACAACCAGCTG 59.036 50.000 6.78 6.78 0.00 4.24
2476 2537 0.896940 AAGATGCCACAACCAGCTGG 60.897 55.000 31.60 31.60 42.17 4.85
2480 2541 4.819783 CCACAACCAGCTGGCTAA 57.180 55.556 33.06 0.00 39.32 3.09
2481 2542 3.034924 CCACAACCAGCTGGCTAAA 57.965 52.632 33.06 0.00 39.32 1.85
2482 2543 1.327303 CCACAACCAGCTGGCTAAAA 58.673 50.000 33.06 0.00 39.32 1.52
2483 2544 1.686052 CCACAACCAGCTGGCTAAAAA 59.314 47.619 33.06 0.00 39.32 1.94
2484 2545 2.299867 CCACAACCAGCTGGCTAAAAAT 59.700 45.455 33.06 8.48 39.32 1.82
2485 2546 3.509575 CCACAACCAGCTGGCTAAAAATA 59.490 43.478 33.06 0.00 39.32 1.40
2486 2547 4.380867 CCACAACCAGCTGGCTAAAAATAG 60.381 45.833 33.06 9.23 39.32 1.73
2487 2548 4.458989 CACAACCAGCTGGCTAAAAATAGA 59.541 41.667 33.06 0.00 39.32 1.98
2488 2549 5.126061 CACAACCAGCTGGCTAAAAATAGAT 59.874 40.000 33.06 5.36 39.32 1.98
2489 2550 6.318648 CACAACCAGCTGGCTAAAAATAGATA 59.681 38.462 33.06 0.00 39.32 1.98
2490 2551 6.543831 ACAACCAGCTGGCTAAAAATAGATAG 59.456 38.462 33.06 6.42 39.32 2.08
2491 2552 5.625150 ACCAGCTGGCTAAAAATAGATAGG 58.375 41.667 33.06 2.66 39.32 2.57
2492 2553 5.006386 CCAGCTGGCTAAAAATAGATAGGG 58.994 45.833 22.33 0.00 0.00 3.53
2493 2554 5.221925 CCAGCTGGCTAAAAATAGATAGGGA 60.222 44.000 22.33 0.00 0.00 4.20
2494 2555 6.299141 CAGCTGGCTAAAAATAGATAGGGAA 58.701 40.000 5.57 0.00 0.00 3.97
2495 2556 6.772716 CAGCTGGCTAAAAATAGATAGGGAAA 59.227 38.462 5.57 0.00 0.00 3.13
2496 2557 6.773200 AGCTGGCTAAAAATAGATAGGGAAAC 59.227 38.462 0.00 0.00 0.00 2.78
2497 2558 6.773200 GCTGGCTAAAAATAGATAGGGAAACT 59.227 38.462 0.00 0.00 0.00 2.66
2498 2559 7.937394 GCTGGCTAAAAATAGATAGGGAAACTA 59.063 37.037 0.00 0.00 35.80 2.24
2499 2560 9.847224 CTGGCTAAAAATAGATAGGGAAACTAA 57.153 33.333 0.00 0.00 34.79 2.24
2515 2576 8.563123 GGGAAACTAATTGCCTATCCTATTAC 57.437 38.462 0.00 0.00 45.56 1.89
2516 2577 8.161425 GGGAAACTAATTGCCTATCCTATTACA 58.839 37.037 0.00 0.00 45.56 2.41
2517 2578 9.740710 GGAAACTAATTGCCTATCCTATTACAT 57.259 33.333 0.00 0.00 0.00 2.29
2520 2581 9.726438 AACTAATTGCCTATCCTATTACATGAC 57.274 33.333 0.00 0.00 0.00 3.06
2521 2582 8.322091 ACTAATTGCCTATCCTATTACATGACC 58.678 37.037 0.00 0.00 0.00 4.02
2522 2583 4.801330 TGCCTATCCTATTACATGACCG 57.199 45.455 0.00 0.00 0.00 4.79
2523 2584 3.056107 TGCCTATCCTATTACATGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
2524 2585 3.679083 GCCTATCCTATTACATGACCGCC 60.679 52.174 0.00 0.00 0.00 6.13
2525 2586 3.513912 CCTATCCTATTACATGACCGCCA 59.486 47.826 0.00 0.00 0.00 5.69
2526 2587 4.162320 CCTATCCTATTACATGACCGCCAT 59.838 45.833 0.00 0.00 35.44 4.40
2527 2588 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
2528 2589 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
2529 2590 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
2530 2591 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
2531 2592 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
2532 2593 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
2533 2594 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
2534 2595 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
2535 2596 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
2537 2598 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
2538 2599 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
2539 2600 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
2540 2601 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
2541 2602 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
2542 2603 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
2543 2604 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
2544 2605 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
2545 2606 4.207165 CCATCCAAACCGGTTGAAGATAT 58.793 43.478 23.08 6.33 39.87 1.63
2546 2607 4.275936 CCATCCAAACCGGTTGAAGATATC 59.724 45.833 23.08 0.00 39.87 1.63
2547 2608 3.881220 TCCAAACCGGTTGAAGATATCC 58.119 45.455 23.08 0.00 39.87 2.59
2548 2609 2.949644 CCAAACCGGTTGAAGATATCCC 59.050 50.000 23.08 0.00 39.87 3.85
2549 2610 2.612212 CAAACCGGTTGAAGATATCCCG 59.388 50.000 23.08 9.61 39.87 5.14
2550 2611 1.784358 ACCGGTTGAAGATATCCCGA 58.216 50.000 16.17 0.00 41.08 5.14
2551 2612 1.687123 ACCGGTTGAAGATATCCCGAG 59.313 52.381 16.17 10.10 41.08 4.63
2552 2613 1.605712 CCGGTTGAAGATATCCCGAGC 60.606 57.143 16.17 9.53 41.08 5.03
2553 2614 1.341531 CGGTTGAAGATATCCCGAGCT 59.658 52.381 10.76 0.00 41.08 4.09
2554 2615 2.557056 CGGTTGAAGATATCCCGAGCTA 59.443 50.000 10.76 0.00 41.08 3.32
2555 2616 3.612004 CGGTTGAAGATATCCCGAGCTAC 60.612 52.174 10.76 0.00 41.08 3.58
2556 2617 3.306156 GGTTGAAGATATCCCGAGCTACC 60.306 52.174 0.00 0.00 0.00 3.18
2557 2618 3.238788 TGAAGATATCCCGAGCTACCA 57.761 47.619 0.00 0.00 0.00 3.25
2558 2619 3.779444 TGAAGATATCCCGAGCTACCAT 58.221 45.455 0.00 0.00 0.00 3.55
2559 2620 3.764434 TGAAGATATCCCGAGCTACCATC 59.236 47.826 0.00 0.00 0.00 3.51
2560 2621 3.748645 AGATATCCCGAGCTACCATCT 57.251 47.619 0.00 0.00 0.00 2.90
2561 2622 3.626930 AGATATCCCGAGCTACCATCTC 58.373 50.000 0.00 0.00 0.00 2.75
2562 2623 2.217510 TATCCCGAGCTACCATCTCC 57.782 55.000 0.00 0.00 0.00 3.71
2563 2624 0.543174 ATCCCGAGCTACCATCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
2564 2625 1.457643 CCCGAGCTACCATCTCCCA 60.458 63.158 0.00 0.00 0.00 4.37
2565 2626 1.467678 CCCGAGCTACCATCTCCCAG 61.468 65.000 0.00 0.00 0.00 4.45
2566 2627 1.365633 CGAGCTACCATCTCCCAGC 59.634 63.158 0.00 0.00 0.00 4.85
2567 2628 1.365633 GAGCTACCATCTCCCAGCG 59.634 63.158 0.00 0.00 39.04 5.18
2568 2629 2.093537 GAGCTACCATCTCCCAGCGG 62.094 65.000 0.00 0.00 39.04 5.52
2569 2630 2.134287 GCTACCATCTCCCAGCGGA 61.134 63.158 0.00 0.00 36.45 5.54
2570 2631 1.476007 GCTACCATCTCCCAGCGGAT 61.476 60.000 0.00 0.00 37.60 4.18
2571 2632 1.924731 CTACCATCTCCCAGCGGATA 58.075 55.000 0.00 0.00 37.60 2.59
2572 2633 1.821753 CTACCATCTCCCAGCGGATAG 59.178 57.143 0.00 0.00 37.60 2.08
2573 2634 0.188587 ACCATCTCCCAGCGGATAGA 59.811 55.000 0.00 0.37 37.60 1.98
2574 2635 1.203237 ACCATCTCCCAGCGGATAGAT 60.203 52.381 0.00 2.45 37.60 1.98
2575 2636 1.480137 CCATCTCCCAGCGGATAGATC 59.520 57.143 8.40 0.00 37.60 2.75
2576 2637 1.480137 CATCTCCCAGCGGATAGATCC 59.520 57.143 0.00 0.00 43.65 3.36
2589 2650 5.948992 GGATAGATCCAGTAACCAAATGC 57.051 43.478 3.54 0.00 46.38 3.56
2590 2651 5.625150 GGATAGATCCAGTAACCAAATGCT 58.375 41.667 3.54 0.00 46.38 3.79
2591 2652 5.703130 GGATAGATCCAGTAACCAAATGCTC 59.297 44.000 3.54 0.00 46.38 4.26
2592 2653 3.891049 AGATCCAGTAACCAAATGCTCC 58.109 45.455 0.00 0.00 0.00 4.70
2593 2654 2.507407 TCCAGTAACCAAATGCTCCC 57.493 50.000 0.00 0.00 0.00 4.30
2594 2655 1.992557 TCCAGTAACCAAATGCTCCCT 59.007 47.619 0.00 0.00 0.00 4.20
2595 2656 2.094675 CCAGTAACCAAATGCTCCCTG 58.905 52.381 0.00 0.00 0.00 4.45
2596 2657 2.094675 CAGTAACCAAATGCTCCCTGG 58.905 52.381 0.00 0.00 36.24 4.45
2597 2658 0.817654 GTAACCAAATGCTCCCTGGC 59.182 55.000 0.00 0.00 33.19 4.85
2598 2659 0.324275 TAACCAAATGCTCCCTGGCC 60.324 55.000 0.00 0.00 33.19 5.36
2599 2660 2.097978 AACCAAATGCTCCCTGGCCT 62.098 55.000 3.32 0.00 33.19 5.19
2600 2661 1.755783 CCAAATGCTCCCTGGCCTC 60.756 63.158 3.32 0.00 0.00 4.70
2601 2662 1.755783 CAAATGCTCCCTGGCCTCC 60.756 63.158 3.32 0.00 0.00 4.30
2602 2663 2.240918 AAATGCTCCCTGGCCTCCA 61.241 57.895 3.32 0.00 0.00 3.86
2603 2664 1.587522 AAATGCTCCCTGGCCTCCAT 61.588 55.000 3.32 0.00 30.82 3.41
2604 2665 2.004408 AATGCTCCCTGGCCTCCATC 62.004 60.000 3.32 0.00 30.82 3.51
2605 2666 4.247380 GCTCCCTGGCCTCCATCG 62.247 72.222 3.32 0.00 30.82 3.84
2606 2667 3.554342 CTCCCTGGCCTCCATCGG 61.554 72.222 3.32 0.00 30.82 4.18
2607 2668 4.088351 TCCCTGGCCTCCATCGGA 62.088 66.667 3.32 0.00 31.87 4.55
2617 2678 0.309302 CTCCATCGGAGTGAGTAGCG 59.691 60.000 1.64 0.00 44.25 4.26
2618 2679 0.107361 TCCATCGGAGTGAGTAGCGA 60.107 55.000 0.00 0.00 0.00 4.93
2619 2680 0.029567 CCATCGGAGTGAGTAGCGAC 59.970 60.000 0.00 0.00 0.00 5.19
2620 2681 0.029567 CATCGGAGTGAGTAGCGACC 59.970 60.000 0.00 0.00 0.00 4.79
2621 2682 0.393944 ATCGGAGTGAGTAGCGACCA 60.394 55.000 0.00 0.00 0.00 4.02
2622 2683 1.136984 CGGAGTGAGTAGCGACCAC 59.863 63.158 9.46 9.46 0.00 4.16
2623 2684 1.136984 GGAGTGAGTAGCGACCACG 59.863 63.158 11.00 0.00 42.93 4.94
2624 2685 1.303799 GGAGTGAGTAGCGACCACGA 61.304 60.000 11.00 0.00 42.66 4.35
2625 2686 0.520404 GAGTGAGTAGCGACCACGAA 59.480 55.000 11.00 0.00 42.66 3.85
2626 2687 0.240411 AGTGAGTAGCGACCACGAAC 59.760 55.000 11.00 0.00 42.66 3.95
2627 2688 1.063951 GTGAGTAGCGACCACGAACG 61.064 60.000 0.00 0.00 42.66 3.95
2628 2689 1.513586 GAGTAGCGACCACGAACGG 60.514 63.158 0.00 0.00 42.66 4.44
2629 2690 1.915614 GAGTAGCGACCACGAACGGA 61.916 60.000 0.00 0.00 42.66 4.69
2630 2691 1.138247 GTAGCGACCACGAACGGAT 59.862 57.895 0.00 0.00 42.66 4.18
2631 2692 0.864797 GTAGCGACCACGAACGGATC 60.865 60.000 0.00 0.00 42.66 3.36
2632 2693 1.307355 TAGCGACCACGAACGGATCA 61.307 55.000 0.00 0.00 42.66 2.92
2633 2694 2.158959 GCGACCACGAACGGATCAG 61.159 63.158 0.00 0.00 42.66 2.90
2634 2695 1.211969 CGACCACGAACGGATCAGT 59.788 57.895 0.00 0.00 42.66 3.41
2635 2696 1.071019 CGACCACGAACGGATCAGTG 61.071 60.000 0.00 0.00 42.66 3.66
2636 2697 1.352156 GACCACGAACGGATCAGTGC 61.352 60.000 0.00 0.00 33.84 4.40
2637 2698 2.100631 CCACGAACGGATCAGTGCC 61.101 63.158 0.00 0.00 33.84 5.01
2643 2704 2.808315 CGGATCAGTGCCGTAGCT 59.192 61.111 0.00 0.00 43.66 3.32
2644 2705 1.141881 CGGATCAGTGCCGTAGCTT 59.858 57.895 0.00 0.00 43.66 3.74
2645 2706 1.148157 CGGATCAGTGCCGTAGCTTG 61.148 60.000 0.00 0.00 43.66 4.01
2646 2707 0.811616 GGATCAGTGCCGTAGCTTGG 60.812 60.000 0.00 0.00 40.80 3.61
2647 2708 0.175760 GATCAGTGCCGTAGCTTGGA 59.824 55.000 8.77 0.00 40.80 3.53
2648 2709 0.613260 ATCAGTGCCGTAGCTTGGAA 59.387 50.000 8.77 0.00 40.80 3.53
2649 2710 0.394938 TCAGTGCCGTAGCTTGGAAA 59.605 50.000 8.77 0.00 40.80 3.13
2650 2711 1.202710 TCAGTGCCGTAGCTTGGAAAA 60.203 47.619 8.77 0.00 40.80 2.29
2651 2712 1.812571 CAGTGCCGTAGCTTGGAAAAT 59.187 47.619 8.77 0.00 40.80 1.82
2652 2713 3.006940 CAGTGCCGTAGCTTGGAAAATA 58.993 45.455 8.77 0.00 40.80 1.40
2653 2714 3.438781 CAGTGCCGTAGCTTGGAAAATAA 59.561 43.478 8.77 0.00 40.80 1.40
2654 2715 3.439129 AGTGCCGTAGCTTGGAAAATAAC 59.561 43.478 8.77 0.00 40.80 1.89
2655 2716 2.750712 TGCCGTAGCTTGGAAAATAACC 59.249 45.455 8.77 0.00 40.80 2.85
2656 2717 2.223180 GCCGTAGCTTGGAAAATAACCG 60.223 50.000 8.77 0.00 35.50 4.44
2657 2718 2.353579 CCGTAGCTTGGAAAATAACCGG 59.646 50.000 0.00 0.00 0.00 5.28
2658 2719 2.223180 CGTAGCTTGGAAAATAACCGGC 60.223 50.000 0.00 0.00 0.00 6.13
2659 2720 1.917872 AGCTTGGAAAATAACCGGCA 58.082 45.000 0.00 0.00 33.64 5.69
2660 2721 2.243810 AGCTTGGAAAATAACCGGCAA 58.756 42.857 0.00 0.00 33.64 4.52
2661 2722 2.630580 AGCTTGGAAAATAACCGGCAAA 59.369 40.909 0.00 0.00 33.64 3.68
2662 2723 2.993220 GCTTGGAAAATAACCGGCAAAG 59.007 45.455 0.00 0.00 0.00 2.77
2663 2724 3.305744 GCTTGGAAAATAACCGGCAAAGA 60.306 43.478 0.00 0.00 0.00 2.52
2664 2725 4.797933 GCTTGGAAAATAACCGGCAAAGAA 60.798 41.667 0.00 0.00 0.00 2.52
2665 2726 5.476091 TTGGAAAATAACCGGCAAAGAAT 57.524 34.783 0.00 0.00 0.00 2.40
2666 2727 4.815269 TGGAAAATAACCGGCAAAGAATG 58.185 39.130 0.00 0.00 0.00 2.67
2667 2728 4.524714 TGGAAAATAACCGGCAAAGAATGA 59.475 37.500 0.00 0.00 0.00 2.57
2668 2729 5.011125 TGGAAAATAACCGGCAAAGAATGAA 59.989 36.000 0.00 0.00 0.00 2.57
2669 2730 6.106003 GGAAAATAACCGGCAAAGAATGAAT 58.894 36.000 0.00 0.00 0.00 2.57
2670 2731 6.255670 GGAAAATAACCGGCAAAGAATGAATC 59.744 38.462 0.00 0.00 0.00 2.52
2671 2732 4.918810 ATAACCGGCAAAGAATGAATCC 57.081 40.909 0.00 0.00 0.00 3.01
2672 2733 1.094785 ACCGGCAAAGAATGAATCCG 58.905 50.000 0.00 0.00 33.51 4.18
2673 2734 1.094785 CCGGCAAAGAATGAATCCGT 58.905 50.000 0.00 0.00 32.30 4.69
2674 2735 1.202177 CCGGCAAAGAATGAATCCGTG 60.202 52.381 0.00 0.00 32.30 4.94
2675 2736 1.737236 CGGCAAAGAATGAATCCGTGA 59.263 47.619 0.00 0.00 30.38 4.35
2676 2737 2.355756 CGGCAAAGAATGAATCCGTGAT 59.644 45.455 0.00 0.00 30.38 3.06
2677 2738 3.699067 GGCAAAGAATGAATCCGTGATG 58.301 45.455 0.00 0.00 0.00 3.07
2678 2739 3.129287 GGCAAAGAATGAATCCGTGATGT 59.871 43.478 0.00 0.00 0.00 3.06
2679 2740 4.380867 GGCAAAGAATGAATCCGTGATGTT 60.381 41.667 0.00 0.00 0.00 2.71
2680 2741 4.795278 GCAAAGAATGAATCCGTGATGTTC 59.205 41.667 0.00 0.00 0.00 3.18
2681 2742 5.392380 GCAAAGAATGAATCCGTGATGTTCT 60.392 40.000 0.00 0.00 0.00 3.01
2682 2743 5.808042 AAGAATGAATCCGTGATGTTCTG 57.192 39.130 0.00 0.00 0.00 3.02
2683 2744 4.836825 AGAATGAATCCGTGATGTTCTGT 58.163 39.130 0.00 0.00 0.00 3.41
2684 2745 5.248640 AGAATGAATCCGTGATGTTCTGTT 58.751 37.500 0.00 0.00 0.00 3.16
2685 2746 6.406370 AGAATGAATCCGTGATGTTCTGTTA 58.594 36.000 0.00 0.00 0.00 2.41
2686 2747 6.878923 AGAATGAATCCGTGATGTTCTGTTAA 59.121 34.615 0.00 0.00 0.00 2.01
2687 2748 7.390440 AGAATGAATCCGTGATGTTCTGTTAAA 59.610 33.333 0.00 0.00 0.00 1.52
2688 2749 6.869315 TGAATCCGTGATGTTCTGTTAAAA 57.131 33.333 0.00 0.00 0.00 1.52
2689 2750 7.265647 TGAATCCGTGATGTTCTGTTAAAAA 57.734 32.000 0.00 0.00 0.00 1.94
2690 2751 7.136119 TGAATCCGTGATGTTCTGTTAAAAAC 58.864 34.615 0.00 0.00 0.00 2.43
2691 2752 5.427036 TCCGTGATGTTCTGTTAAAAACC 57.573 39.130 0.00 0.00 0.00 3.27
2692 2753 4.882427 TCCGTGATGTTCTGTTAAAAACCA 59.118 37.500 0.00 0.00 0.00 3.67
2693 2754 5.357314 TCCGTGATGTTCTGTTAAAAACCAA 59.643 36.000 0.00 0.00 0.00 3.67
2694 2755 6.037098 CCGTGATGTTCTGTTAAAAACCAAA 58.963 36.000 0.00 0.00 0.00 3.28
2695 2756 6.699642 CCGTGATGTTCTGTTAAAAACCAAAT 59.300 34.615 0.00 0.00 0.00 2.32
2696 2757 7.096230 CCGTGATGTTCTGTTAAAAACCAAATC 60.096 37.037 0.00 0.00 0.00 2.17
2697 2758 7.433719 CGTGATGTTCTGTTAAAAACCAAATCA 59.566 33.333 0.00 0.00 0.00 2.57
2698 2759 9.260002 GTGATGTTCTGTTAAAAACCAAATCAT 57.740 29.630 0.00 0.00 0.00 2.45
2699 2760 9.829507 TGATGTTCTGTTAAAAACCAAATCATT 57.170 25.926 0.00 0.00 0.00 2.57
2702 2763 9.883142 TGTTCTGTTAAAAACCAAATCATTTCT 57.117 25.926 0.00 0.00 0.00 2.52
2704 2765 8.364129 TCTGTTAAAAACCAAATCATTTCTGC 57.636 30.769 0.00 0.00 0.00 4.26
2705 2766 7.984050 TCTGTTAAAAACCAAATCATTTCTGCA 59.016 29.630 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.347216 AGCTCTGTTGTTTGTTGACACT 58.653 40.909 0.00 0.00 0.00 3.55
54 55 1.760029 TGCACGTCCATATCAGCCTAA 59.240 47.619 0.00 0.00 0.00 2.69
118 119 1.604693 CGTGTTCCGGAACTACTGCTT 60.605 52.381 39.21 0.00 41.67 3.91
156 157 3.257393 GCGATTAGCATGATCGATCCTT 58.743 45.455 22.31 7.51 46.93 3.36
171 172 0.458716 TTGCATCACGGACGCGATTA 60.459 50.000 15.93 0.00 0.00 1.75
172 173 1.739929 TTGCATCACGGACGCGATT 60.740 52.632 15.93 0.00 0.00 3.34
189 190 0.683412 GTGGTCCTTGTACTCCCGTT 59.317 55.000 0.00 0.00 0.00 4.44
192 193 0.323957 GTGGTGGTCCTTGTACTCCC 59.676 60.000 0.00 0.00 34.23 4.30
193 194 0.323957 GGTGGTGGTCCTTGTACTCC 59.676 60.000 0.00 0.00 34.23 3.85
217 218 1.376424 CAACGTGATGGAGGCAGCT 60.376 57.895 0.00 0.00 0.00 4.24
244 245 3.371063 GTCCTCTGTCGTGGCGGA 61.371 66.667 0.00 0.00 0.00 5.54
263 264 3.389139 TATGAGCAGGGAGGGCCGA 62.389 63.158 0.00 0.00 33.83 5.54
272 273 3.916544 TCGCGGGCTATGAGCAGG 61.917 66.667 6.13 0.00 44.75 4.85
280 281 2.678934 ACTTGGAGTCGCGGGCTA 60.679 61.111 6.13 0.00 0.00 3.93
297 298 0.247460 CAGTTCCGTCAGATCTGGCA 59.753 55.000 26.10 5.66 38.26 4.92
491 492 0.568192 CCTTATCCCTCCTCCCCTGA 59.432 60.000 0.00 0.00 0.00 3.86
602 610 2.666098 GGAGAAACCCTAGCCGCCA 61.666 63.158 0.00 0.00 0.00 5.69
646 654 2.247311 CAAAAGGACTTTGCGGATCG 57.753 50.000 0.00 0.00 38.17 3.69
653 661 0.598065 CTCCGGGCAAAAGGACTTTG 59.402 55.000 0.00 0.00 46.20 2.77
654 662 1.179174 GCTCCGGGCAAAAGGACTTT 61.179 55.000 0.00 0.00 41.35 2.66
655 663 1.603739 GCTCCGGGCAAAAGGACTT 60.604 57.895 0.00 0.00 41.35 3.01
656 664 2.034221 GCTCCGGGCAAAAGGACT 59.966 61.111 0.00 0.00 41.35 3.85
657 665 3.062466 GGCTCCGGGCAAAAGGAC 61.062 66.667 15.49 0.00 44.01 3.85
658 666 3.575247 TGGCTCCGGGCAAAAGGA 61.575 61.111 15.49 0.00 45.10 3.36
676 684 2.828480 GAAGGCCACAAGGGAGCTCC 62.828 65.000 25.59 25.59 40.01 4.70
677 685 1.377856 GAAGGCCACAAGGGAGCTC 60.378 63.158 5.01 4.71 40.01 4.09
678 686 0.547712 TAGAAGGCCACAAGGGAGCT 60.548 55.000 5.01 0.00 40.01 4.09
679 687 0.393132 GTAGAAGGCCACAAGGGAGC 60.393 60.000 5.01 0.00 40.01 4.70
680 688 0.253327 GGTAGAAGGCCACAAGGGAG 59.747 60.000 5.01 0.00 40.01 4.30
681 689 1.205460 GGGTAGAAGGCCACAAGGGA 61.205 60.000 5.01 0.00 40.01 4.20
691 699 2.510906 CGGCCATGGGGTAGAAGG 59.489 66.667 15.13 0.00 36.17 3.46
768 776 2.087646 GGAGCTAGCCACAAGGAAAAG 58.912 52.381 12.13 0.00 36.89 2.27
776 784 0.325577 TGAGATGGGAGCTAGCCACA 60.326 55.000 12.13 10.93 0.00 4.17
783 791 0.326904 TCCATGGTGAGATGGGAGCT 60.327 55.000 12.58 0.00 42.95 4.09
791 799 2.094182 GCTAAAGTCGTCCATGGTGAGA 60.094 50.000 12.58 7.04 0.00 3.27
794 802 0.999406 CGCTAAAGTCGTCCATGGTG 59.001 55.000 12.58 6.00 0.00 4.17
800 808 3.678548 ACTTCAAATCGCTAAAGTCGTCC 59.321 43.478 0.00 0.00 0.00 4.79
821 829 0.615331 TCCTCAGCCTTGGTGATGAC 59.385 55.000 0.00 0.00 39.36 3.06
822 830 0.907486 CTCCTCAGCCTTGGTGATGA 59.093 55.000 0.00 0.00 39.36 2.92
932 940 8.980481 TGAGTTGGTTAGAAAGAAAGAAAGAT 57.020 30.769 0.00 0.00 0.00 2.40
1003 1011 8.037382 ACTAGCTGCTTGTAATTATATGCATG 57.963 34.615 18.72 14.58 0.00 4.06
1005 1013 9.725019 ATTACTAGCTGCTTGTAATTATATGCA 57.275 29.630 30.40 17.80 38.50 3.96
1013 1021 9.477484 GTACACATATTACTAGCTGCTTGTAAT 57.523 33.333 34.47 34.47 42.00 1.89
1014 1022 8.692710 AGTACACATATTACTAGCTGCTTGTAA 58.307 33.333 29.15 29.15 36.50 2.41
1016 1024 6.980978 CAGTACACATATTACTAGCTGCTTGT 59.019 38.462 19.76 19.76 0.00 3.16
1017 1025 6.422100 CCAGTACACATATTACTAGCTGCTTG 59.578 42.308 7.79 8.80 0.00 4.01
1018 1026 6.516718 CCAGTACACATATTACTAGCTGCTT 58.483 40.000 7.79 0.00 0.00 3.91
1019 1027 5.509840 GCCAGTACACATATTACTAGCTGCT 60.510 44.000 7.57 7.57 33.09 4.24
1020 1028 4.686554 GCCAGTACACATATTACTAGCTGC 59.313 45.833 0.00 0.00 33.09 5.25
1021 1029 6.090483 AGCCAGTACACATATTACTAGCTG 57.910 41.667 0.00 0.00 41.26 4.24
1022 1030 7.005296 AGTAGCCAGTACACATATTACTAGCT 58.995 38.462 9.82 9.82 43.89 3.32
1023 1031 7.085116 CAGTAGCCAGTACACATATTACTAGC 58.915 42.308 0.00 0.00 35.24 3.42
1024 1032 7.309255 CCCAGTAGCCAGTACACATATTACTAG 60.309 44.444 0.00 0.00 33.55 2.57
1025 1033 6.492429 CCCAGTAGCCAGTACACATATTACTA 59.508 42.308 0.00 0.00 33.55 1.82
1026 1034 5.304614 CCCAGTAGCCAGTACACATATTACT 59.695 44.000 0.00 0.00 33.55 2.24
1027 1035 5.539048 CCCAGTAGCCAGTACACATATTAC 58.461 45.833 0.00 0.00 33.55 1.89
1028 1036 4.039973 GCCCAGTAGCCAGTACACATATTA 59.960 45.833 0.00 0.00 33.55 0.98
1030 1038 2.368875 GCCCAGTAGCCAGTACACATAT 59.631 50.000 0.00 0.00 33.55 1.78
1039 1056 0.602106 CGATGATGCCCAGTAGCCAG 60.602 60.000 0.00 0.00 0.00 4.85
1040 1057 1.447217 CGATGATGCCCAGTAGCCA 59.553 57.895 0.00 0.00 0.00 4.75
1041 1058 1.963338 GCGATGATGCCCAGTAGCC 60.963 63.158 0.00 0.00 0.00 3.93
1043 1060 0.882042 GGTGCGATGATGCCCAGTAG 60.882 60.000 0.00 0.00 0.00 2.57
1044 1061 1.146041 GGTGCGATGATGCCCAGTA 59.854 57.895 0.00 0.00 0.00 2.74
1046 1063 1.527611 ATGGTGCGATGATGCCCAG 60.528 57.895 0.00 0.00 38.18 4.45
1048 1065 2.558286 CCATGGTGCGATGATGCCC 61.558 63.158 2.57 0.00 0.00 5.36
1049 1066 0.892358 ATCCATGGTGCGATGATGCC 60.892 55.000 12.58 0.00 0.00 4.40
1050 1067 0.240145 CATCCATGGTGCGATGATGC 59.760 55.000 12.58 0.00 38.53 3.91
1053 1070 4.883240 CCATCCATGGTGCGATGA 57.117 55.556 12.58 0.00 43.05 2.92
1093 1144 4.976116 CCTCGAAAAAGTTGACCATGTTTC 59.024 41.667 0.00 0.00 0.00 2.78
1095 1146 3.317993 CCCTCGAAAAAGTTGACCATGTT 59.682 43.478 0.00 0.00 0.00 2.71
1110 1161 3.833645 CGGTCGCCATCCCTCGAA 61.834 66.667 0.00 0.00 36.41 3.71
1151 1202 1.821759 CACAACTGGGTGCGGTCAA 60.822 57.895 0.00 0.00 31.10 3.18
1175 1227 0.250553 GATGAACAACGGGTGGGTCA 60.251 55.000 0.00 0.00 31.97 4.02
1176 1228 1.296056 CGATGAACAACGGGTGGGTC 61.296 60.000 0.00 0.00 0.00 4.46
1253 1308 3.388676 TCTCAAGGGTGAAAACCTCGTTA 59.611 43.478 0.00 0.00 37.35 3.18
1273 1328 2.989571 AGGGTGGAAAGTTGATCCTTCT 59.010 45.455 0.00 0.00 37.85 2.85
1274 1329 3.244911 TGAGGGTGGAAAGTTGATCCTTC 60.245 47.826 0.00 0.00 37.85 3.46
1300 1355 0.105453 ACCGGAGCCACCTCAGATAT 60.105 55.000 9.46 0.00 39.96 1.63
1301 1356 1.043116 CACCGGAGCCACCTCAGATA 61.043 60.000 9.46 0.00 39.96 1.98
1307 1362 2.955881 GCTAACACCGGAGCCACCT 61.956 63.158 9.46 0.00 36.31 4.00
1379 1434 3.877735 GCATTATGGAGTTTGGTGGGAGT 60.878 47.826 0.00 0.00 0.00 3.85
1403 1458 4.595538 TTGGCCGCGAACACGAGT 62.596 61.111 8.23 0.00 34.06 4.18
1445 1500 0.822164 CGAAGTAACCATCCGGGAGT 59.178 55.000 0.00 0.00 41.15 3.85
1454 1509 0.881159 CCACGTTGCCGAAGTAACCA 60.881 55.000 0.00 0.00 35.37 3.67
1471 1526 2.668250 CGACACTGACGTTTATCACCA 58.332 47.619 0.00 0.00 0.00 4.17
1521 1576 2.186903 CGCGATGTAGGCCAGGTT 59.813 61.111 5.01 0.00 0.00 3.50
1610 1665 1.140312 TGTCCCTCTTTGCTTGGTCT 58.860 50.000 0.00 0.00 0.00 3.85
1658 1713 2.092323 CTGACCACTCTCATGTCCGTA 58.908 52.381 0.00 0.00 0.00 4.02
1903 1962 1.608283 GGGTGCGAGAAAACACTAGCT 60.608 52.381 0.00 0.00 38.83 3.32
1918 1977 0.822121 ACAAAGAGAAACGGGGGTGC 60.822 55.000 0.00 0.00 0.00 5.01
1923 1982 3.303132 CGAAGAACACAAAGAGAAACGGG 60.303 47.826 0.00 0.00 0.00 5.28
2007 2066 8.482943 TGCAAACTATTTGATCTAGGCTAACTA 58.517 33.333 5.49 0.00 43.26 2.24
2012 2071 6.125029 ACATGCAAACTATTTGATCTAGGCT 58.875 36.000 5.49 0.00 43.26 4.58
2027 2086 5.065218 CACTAATACTCTGGGACATGCAAAC 59.935 44.000 0.00 0.00 38.20 2.93
2031 2090 4.141937 TGTCACTAATACTCTGGGACATGC 60.142 45.833 0.00 0.00 38.20 4.06
2039 2098 5.250235 ACATCCGTGTCACTAATACTCTG 57.750 43.478 0.65 0.00 31.41 3.35
2040 2099 5.916661 AACATCCGTGTCACTAATACTCT 57.083 39.130 0.65 0.00 37.67 3.24
2045 2104 5.245531 ACATCAAACATCCGTGTCACTAAT 58.754 37.500 0.65 0.00 37.67 1.73
2071 2132 6.542370 CAGGGTACAAACATCCAATAGGTTAG 59.458 42.308 0.00 0.00 30.39 2.34
2133 2194 8.557592 TGAGACTAGAACGAGTAAATTCACTA 57.442 34.615 0.00 0.00 0.00 2.74
2135 2196 6.748198 CCTGAGACTAGAACGAGTAAATTCAC 59.252 42.308 0.00 0.00 0.00 3.18
2147 2208 2.823154 ACTCTGCACCTGAGACTAGAAC 59.177 50.000 8.34 0.00 34.33 3.01
2149 2210 2.889170 ACTCTGCACCTGAGACTAGA 57.111 50.000 8.34 0.00 34.33 2.43
2150 2211 3.876914 CTCTACTCTGCACCTGAGACTAG 59.123 52.174 8.34 1.70 34.33 2.57
2151 2212 3.264706 ACTCTACTCTGCACCTGAGACTA 59.735 47.826 8.34 0.00 34.33 2.59
2152 2213 2.041081 ACTCTACTCTGCACCTGAGACT 59.959 50.000 8.34 0.00 34.33 3.24
2186 2247 1.128692 ACGCTAAACAAATCGAGCAGC 59.871 47.619 0.00 0.00 34.49 5.25
2296 2357 4.804420 ATGCAGAGGCCGGGGAGA 62.804 66.667 2.18 0.00 40.13 3.71
2297 2358 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
2299 2360 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2300 2361 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
2301 2362 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
2302 2363 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
2303 2364 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
2304 2365 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
2312 2373 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
2313 2374 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
2314 2375 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
2315 2376 0.106708 ATGGCCGTATGCATCGTTCT 59.893 50.000 0.19 0.00 43.89 3.01
2316 2377 0.512952 GATGGCCGTATGCATCGTTC 59.487 55.000 0.19 2.49 43.89 3.95
2317 2378 0.106708 AGATGGCCGTATGCATCGTT 59.893 50.000 0.19 0.00 43.89 3.85
2318 2379 0.106708 AAGATGGCCGTATGCATCGT 59.893 50.000 0.19 0.00 43.89 3.73
2319 2380 2.078849 TAAGATGGCCGTATGCATCG 57.921 50.000 0.19 7.03 43.89 3.84
2320 2381 5.163754 GGTTAATAAGATGGCCGTATGCATC 60.164 44.000 0.19 0.00 43.89 3.91
2321 2382 4.700213 GGTTAATAAGATGGCCGTATGCAT 59.300 41.667 3.79 3.79 43.89 3.96
2322 2383 4.069304 GGTTAATAAGATGGCCGTATGCA 58.931 43.478 0.00 0.00 43.89 3.96
2323 2384 4.069304 TGGTTAATAAGATGGCCGTATGC 58.931 43.478 0.00 0.00 40.16 3.14
2324 2385 6.627395 TTTGGTTAATAAGATGGCCGTATG 57.373 37.500 0.00 0.00 0.00 2.39
2325 2386 8.789762 GTTATTTGGTTAATAAGATGGCCGTAT 58.210 33.333 0.00 0.00 38.92 3.06
2326 2387 7.774157 TGTTATTTGGTTAATAAGATGGCCGTA 59.226 33.333 0.00 0.00 38.92 4.02
2327 2388 6.603997 TGTTATTTGGTTAATAAGATGGCCGT 59.396 34.615 0.00 0.00 38.92 5.68
2328 2389 7.033530 TGTTATTTGGTTAATAAGATGGCCG 57.966 36.000 0.00 0.00 38.92 6.13
2329 2390 9.660180 TTTTGTTATTTGGTTAATAAGATGGCC 57.340 29.630 0.00 0.00 38.92 5.36
2334 2395 9.699703 GCACCTTTTGTTATTTGGTTAATAAGA 57.300 29.630 0.00 0.00 38.92 2.10
2335 2396 8.931775 GGCACCTTTTGTTATTTGGTTAATAAG 58.068 33.333 0.00 0.00 38.92 1.73
2336 2397 8.429641 TGGCACCTTTTGTTATTTGGTTAATAA 58.570 29.630 0.00 0.00 36.57 1.40
2337 2398 7.963532 TGGCACCTTTTGTTATTTGGTTAATA 58.036 30.769 0.00 0.00 0.00 0.98
2338 2399 6.831976 TGGCACCTTTTGTTATTTGGTTAAT 58.168 32.000 0.00 0.00 0.00 1.40
2339 2400 6.235231 TGGCACCTTTTGTTATTTGGTTAA 57.765 33.333 0.00 0.00 0.00 2.01
2340 2401 5.871396 TGGCACCTTTTGTTATTTGGTTA 57.129 34.783 0.00 0.00 0.00 2.85
2341 2402 4.762289 TGGCACCTTTTGTTATTTGGTT 57.238 36.364 0.00 0.00 0.00 3.67
2342 2403 4.080863 TGTTGGCACCTTTTGTTATTTGGT 60.081 37.500 0.00 0.00 0.00 3.67
2343 2404 4.446371 TGTTGGCACCTTTTGTTATTTGG 58.554 39.130 0.00 0.00 0.00 3.28
2344 2405 5.007528 CCTTGTTGGCACCTTTTGTTATTTG 59.992 40.000 0.00 0.00 0.00 2.32
2345 2406 5.122519 CCTTGTTGGCACCTTTTGTTATTT 58.877 37.500 0.00 0.00 0.00 1.40
2346 2407 4.163268 ACCTTGTTGGCACCTTTTGTTATT 59.837 37.500 0.00 0.00 40.22 1.40
2347 2408 3.709141 ACCTTGTTGGCACCTTTTGTTAT 59.291 39.130 0.00 0.00 40.22 1.89
2348 2409 3.100671 ACCTTGTTGGCACCTTTTGTTA 58.899 40.909 0.00 0.00 40.22 2.41
2349 2410 1.905894 ACCTTGTTGGCACCTTTTGTT 59.094 42.857 0.00 0.00 40.22 2.83
2350 2411 1.567357 ACCTTGTTGGCACCTTTTGT 58.433 45.000 0.00 0.00 40.22 2.83
2351 2412 2.549926 GAACCTTGTTGGCACCTTTTG 58.450 47.619 0.00 0.00 40.22 2.44
2352 2413 1.484653 GGAACCTTGTTGGCACCTTTT 59.515 47.619 0.00 0.00 40.22 2.27
2353 2414 1.119684 GGAACCTTGTTGGCACCTTT 58.880 50.000 0.00 0.00 40.22 3.11
2354 2415 0.032615 TGGAACCTTGTTGGCACCTT 60.033 50.000 0.00 0.00 40.22 3.50
2355 2416 0.755327 GTGGAACCTTGTTGGCACCT 60.755 55.000 0.00 0.00 40.22 4.00
2356 2417 1.040339 TGTGGAACCTTGTTGGCACC 61.040 55.000 0.00 0.00 40.22 5.01
2357 2418 0.385390 CTGTGGAACCTTGTTGGCAC 59.615 55.000 0.00 0.00 40.22 5.01
2358 2419 0.033601 ACTGTGGAACCTTGTTGGCA 60.034 50.000 0.00 0.00 40.22 4.92
2359 2420 0.668535 GACTGTGGAACCTTGTTGGC 59.331 55.000 0.00 0.00 40.22 4.52
2360 2421 2.222027 GAGACTGTGGAACCTTGTTGG 58.778 52.381 0.00 0.00 42.93 3.77
2361 2422 2.222027 GGAGACTGTGGAACCTTGTTG 58.778 52.381 0.00 0.00 34.36 3.33
2362 2423 1.843851 TGGAGACTGTGGAACCTTGTT 59.156 47.619 0.00 0.00 34.36 2.83
2363 2424 1.417890 CTGGAGACTGTGGAACCTTGT 59.582 52.381 0.00 0.00 34.36 3.16
2364 2425 1.879796 GCTGGAGACTGTGGAACCTTG 60.880 57.143 0.00 0.00 34.36 3.61
2365 2426 0.398318 GCTGGAGACTGTGGAACCTT 59.602 55.000 0.00 0.00 34.36 3.50
2366 2427 1.484444 GGCTGGAGACTGTGGAACCT 61.484 60.000 0.00 0.00 34.36 3.50
2367 2428 1.003233 GGCTGGAGACTGTGGAACC 60.003 63.158 0.00 0.00 34.36 3.62
2368 2429 0.108585 TTGGCTGGAGACTGTGGAAC 59.891 55.000 0.00 0.00 37.35 3.62
2369 2430 0.843309 TTTGGCTGGAGACTGTGGAA 59.157 50.000 0.00 0.00 0.00 3.53
2370 2431 0.108585 GTTTGGCTGGAGACTGTGGA 59.891 55.000 0.00 0.00 0.00 4.02
2371 2432 1.230635 CGTTTGGCTGGAGACTGTGG 61.231 60.000 0.00 0.00 0.00 4.17
2372 2433 0.249868 TCGTTTGGCTGGAGACTGTG 60.250 55.000 0.00 0.00 0.00 3.66
2373 2434 0.468226 TTCGTTTGGCTGGAGACTGT 59.532 50.000 0.00 0.00 0.00 3.55
2374 2435 1.593196 TTTCGTTTGGCTGGAGACTG 58.407 50.000 0.00 0.00 0.00 3.51
2375 2436 2.222027 CTTTTCGTTTGGCTGGAGACT 58.778 47.619 0.00 0.00 0.00 3.24
2376 2437 1.335051 GCTTTTCGTTTGGCTGGAGAC 60.335 52.381 0.00 0.00 0.00 3.36
2377 2438 0.951558 GCTTTTCGTTTGGCTGGAGA 59.048 50.000 0.00 0.00 0.00 3.71
2378 2439 0.667993 TGCTTTTCGTTTGGCTGGAG 59.332 50.000 0.00 0.00 0.00 3.86
2379 2440 1.107114 TTGCTTTTCGTTTGGCTGGA 58.893 45.000 0.00 0.00 0.00 3.86
2380 2441 1.860326 CTTTGCTTTTCGTTTGGCTGG 59.140 47.619 0.00 0.00 0.00 4.85
2381 2442 1.860326 CCTTTGCTTTTCGTTTGGCTG 59.140 47.619 0.00 0.00 0.00 4.85
2382 2443 1.754226 TCCTTTGCTTTTCGTTTGGCT 59.246 42.857 0.00 0.00 0.00 4.75
2383 2444 2.217429 TCCTTTGCTTTTCGTTTGGC 57.783 45.000 0.00 0.00 0.00 4.52
2384 2445 6.618379 GCATTTATCCTTTGCTTTTCGTTTGG 60.618 38.462 0.00 0.00 33.61 3.28
2385 2446 6.298853 GCATTTATCCTTTGCTTTTCGTTTG 58.701 36.000 0.00 0.00 33.61 2.93
2386 2447 5.408299 GGCATTTATCCTTTGCTTTTCGTTT 59.592 36.000 0.00 0.00 36.62 3.60
2387 2448 4.929211 GGCATTTATCCTTTGCTTTTCGTT 59.071 37.500 0.00 0.00 36.62 3.85
2388 2449 4.494484 GGCATTTATCCTTTGCTTTTCGT 58.506 39.130 0.00 0.00 36.62 3.85
2389 2450 3.547468 CGGCATTTATCCTTTGCTTTTCG 59.453 43.478 0.00 0.00 36.62 3.46
2390 2451 3.306973 GCGGCATTTATCCTTTGCTTTTC 59.693 43.478 0.00 0.00 36.62 2.29
2391 2452 3.055891 AGCGGCATTTATCCTTTGCTTTT 60.056 39.130 1.45 0.00 36.62 2.27
2392 2453 2.497273 AGCGGCATTTATCCTTTGCTTT 59.503 40.909 1.45 0.00 36.62 3.51
2393 2454 2.099756 GAGCGGCATTTATCCTTTGCTT 59.900 45.455 1.45 0.00 36.62 3.91
2394 2455 1.678101 GAGCGGCATTTATCCTTTGCT 59.322 47.619 1.45 0.00 36.62 3.91
2395 2456 1.405105 TGAGCGGCATTTATCCTTTGC 59.595 47.619 1.45 0.00 35.64 3.68
2396 2457 2.423185 TGTGAGCGGCATTTATCCTTTG 59.577 45.455 1.45 0.00 0.00 2.77
2397 2458 2.423538 GTGTGAGCGGCATTTATCCTTT 59.576 45.455 1.45 0.00 0.00 3.11
2398 2459 2.017049 GTGTGAGCGGCATTTATCCTT 58.983 47.619 1.45 0.00 0.00 3.36
2399 2460 1.065491 TGTGTGAGCGGCATTTATCCT 60.065 47.619 1.45 0.00 0.00 3.24
2400 2461 1.331756 CTGTGTGAGCGGCATTTATCC 59.668 52.381 1.45 0.00 0.00 2.59
2401 2462 2.279741 TCTGTGTGAGCGGCATTTATC 58.720 47.619 1.45 0.00 0.00 1.75
2402 2463 2.283298 CTCTGTGTGAGCGGCATTTAT 58.717 47.619 1.45 0.00 35.84 1.40
2403 2464 1.725641 CTCTGTGTGAGCGGCATTTA 58.274 50.000 1.45 0.00 35.84 1.40
2404 2465 2.548178 CTCTGTGTGAGCGGCATTT 58.452 52.632 1.45 0.00 35.84 2.32
2405 2466 4.291047 CTCTGTGTGAGCGGCATT 57.709 55.556 1.45 0.00 35.84 3.56
2412 2473 1.735920 GCCTGTCGCTCTGTGTGAG 60.736 63.158 0.00 0.00 45.33 3.51
2413 2474 2.340078 GCCTGTCGCTCTGTGTGA 59.660 61.111 0.00 0.00 0.00 3.58
2414 2475 3.108289 CGCCTGTCGCTCTGTGTG 61.108 66.667 0.00 0.00 34.21 3.82
2415 2476 4.363990 CCGCCTGTCGCTCTGTGT 62.364 66.667 0.00 0.00 36.73 3.72
2418 2479 3.764810 CTAGCCGCCTGTCGCTCTG 62.765 68.421 0.00 0.00 36.73 3.35
2419 2480 3.522731 CTAGCCGCCTGTCGCTCT 61.523 66.667 0.00 0.00 36.73 4.09
2420 2481 1.516365 TATCTAGCCGCCTGTCGCTC 61.516 60.000 0.00 0.00 36.73 5.03
2421 2482 1.528542 TATCTAGCCGCCTGTCGCT 60.529 57.895 0.00 0.00 36.73 4.93
2422 2483 1.371881 GTATCTAGCCGCCTGTCGC 60.372 63.158 0.00 0.00 36.73 5.19
2423 2484 0.039978 CTGTATCTAGCCGCCTGTCG 60.040 60.000 0.00 0.00 38.08 4.35
2424 2485 1.268352 CTCTGTATCTAGCCGCCTGTC 59.732 57.143 0.00 0.00 0.00 3.51
2425 2486 1.133761 TCTCTGTATCTAGCCGCCTGT 60.134 52.381 0.00 0.00 0.00 4.00
2426 2487 1.268352 GTCTCTGTATCTAGCCGCCTG 59.732 57.143 0.00 0.00 0.00 4.85
2427 2488 1.144093 AGTCTCTGTATCTAGCCGCCT 59.856 52.381 0.00 0.00 0.00 5.52
2428 2489 1.611519 AGTCTCTGTATCTAGCCGCC 58.388 55.000 0.00 0.00 0.00 6.13
2429 2490 2.160813 GCTAGTCTCTGTATCTAGCCGC 59.839 54.545 10.99 0.00 46.04 6.53
2433 2494 4.274602 TCCGGCTAGTCTCTGTATCTAG 57.725 50.000 0.00 0.00 35.60 2.43
2434 2495 4.701651 TTCCGGCTAGTCTCTGTATCTA 57.298 45.455 0.00 0.00 0.00 1.98
2435 2496 3.579534 TTCCGGCTAGTCTCTGTATCT 57.420 47.619 0.00 0.00 0.00 1.98
2436 2497 4.650754 TTTTCCGGCTAGTCTCTGTATC 57.349 45.455 0.00 0.00 0.00 2.24
2437 2498 4.710375 TCTTTTTCCGGCTAGTCTCTGTAT 59.290 41.667 0.00 0.00 0.00 2.29
2438 2499 4.084287 TCTTTTTCCGGCTAGTCTCTGTA 58.916 43.478 0.00 0.00 0.00 2.74
2439 2500 2.897969 TCTTTTTCCGGCTAGTCTCTGT 59.102 45.455 0.00 0.00 0.00 3.41
2440 2501 3.594603 TCTTTTTCCGGCTAGTCTCTG 57.405 47.619 0.00 0.00 0.00 3.35
2441 2502 3.680196 GCATCTTTTTCCGGCTAGTCTCT 60.680 47.826 0.00 0.00 0.00 3.10
2442 2503 2.609916 GCATCTTTTTCCGGCTAGTCTC 59.390 50.000 0.00 0.00 0.00 3.36
2443 2504 2.633488 GCATCTTTTTCCGGCTAGTCT 58.367 47.619 0.00 0.00 0.00 3.24
2444 2505 1.671328 GGCATCTTTTTCCGGCTAGTC 59.329 52.381 0.00 0.00 0.00 2.59
2445 2506 1.004277 TGGCATCTTTTTCCGGCTAGT 59.996 47.619 0.00 0.00 0.00 2.57
2446 2507 1.401905 GTGGCATCTTTTTCCGGCTAG 59.598 52.381 0.00 0.00 0.00 3.42
2447 2508 1.271652 TGTGGCATCTTTTTCCGGCTA 60.272 47.619 0.00 0.00 0.00 3.93
2448 2509 0.539438 TGTGGCATCTTTTTCCGGCT 60.539 50.000 0.00 0.00 0.00 5.52
2449 2510 0.316841 TTGTGGCATCTTTTTCCGGC 59.683 50.000 0.00 0.00 0.00 6.13
2450 2511 1.336795 GGTTGTGGCATCTTTTTCCGG 60.337 52.381 0.00 0.00 0.00 5.14
2451 2512 1.339610 TGGTTGTGGCATCTTTTTCCG 59.660 47.619 0.00 0.00 0.00 4.30
2452 2513 2.867647 GCTGGTTGTGGCATCTTTTTCC 60.868 50.000 0.00 0.00 0.00 3.13
2453 2514 2.036346 AGCTGGTTGTGGCATCTTTTTC 59.964 45.455 0.00 0.00 0.00 2.29
2454 2515 2.041701 AGCTGGTTGTGGCATCTTTTT 58.958 42.857 0.00 0.00 0.00 1.94
2455 2516 1.342174 CAGCTGGTTGTGGCATCTTTT 59.658 47.619 5.57 0.00 0.00 2.27
2456 2517 0.963962 CAGCTGGTTGTGGCATCTTT 59.036 50.000 5.57 0.00 0.00 2.52
2457 2518 0.896940 CCAGCTGGTTGTGGCATCTT 60.897 55.000 25.53 0.00 0.00 2.40
2458 2519 1.303888 CCAGCTGGTTGTGGCATCT 60.304 57.895 25.53 0.00 0.00 2.90
2459 2520 3.281240 CCAGCTGGTTGTGGCATC 58.719 61.111 25.53 0.00 0.00 3.91
2463 2524 1.327303 TTTTAGCCAGCTGGTTGTGG 58.673 50.000 32.81 8.97 37.57 4.17
2464 2525 3.665745 ATTTTTAGCCAGCTGGTTGTG 57.334 42.857 32.81 8.64 37.57 3.33
2465 2526 4.662278 TCTATTTTTAGCCAGCTGGTTGT 58.338 39.130 32.81 20.14 37.57 3.32
2466 2527 5.841957 ATCTATTTTTAGCCAGCTGGTTG 57.158 39.130 32.81 14.00 37.57 3.77
2467 2528 6.064717 CCTATCTATTTTTAGCCAGCTGGTT 58.935 40.000 32.81 29.58 37.57 3.67
2468 2529 5.456763 CCCTATCTATTTTTAGCCAGCTGGT 60.457 44.000 32.81 21.44 37.57 4.00
2469 2530 5.006386 CCCTATCTATTTTTAGCCAGCTGG 58.994 45.833 29.34 29.34 38.53 4.85
2470 2531 5.869579 TCCCTATCTATTTTTAGCCAGCTG 58.130 41.667 6.78 6.78 0.00 4.24
2471 2532 6.515512 TTCCCTATCTATTTTTAGCCAGCT 57.484 37.500 0.00 0.00 0.00 4.24
2472 2533 6.773200 AGTTTCCCTATCTATTTTTAGCCAGC 59.227 38.462 0.00 0.00 0.00 4.85
2473 2534 9.847224 TTAGTTTCCCTATCTATTTTTAGCCAG 57.153 33.333 0.00 0.00 0.00 4.85
2479 2540 9.715119 AGGCAATTAGTTTCCCTATCTATTTTT 57.285 29.630 0.00 0.00 0.00 1.94
2487 2548 8.701643 ATAGGATAGGCAATTAGTTTCCCTAT 57.298 34.615 6.64 6.64 40.58 2.57
2488 2549 8.520119 AATAGGATAGGCAATTAGTTTCCCTA 57.480 34.615 0.00 0.00 33.10 3.53
2489 2550 7.408013 AATAGGATAGGCAATTAGTTTCCCT 57.592 36.000 0.00 0.00 0.00 4.20
2490 2551 8.161425 TGTAATAGGATAGGCAATTAGTTTCCC 58.839 37.037 0.00 0.00 0.00 3.97
2491 2552 9.740710 ATGTAATAGGATAGGCAATTAGTTTCC 57.259 33.333 0.00 0.00 0.00 3.13
2494 2555 9.726438 GTCATGTAATAGGATAGGCAATTAGTT 57.274 33.333 0.00 0.00 0.00 2.24
2495 2556 8.322091 GGTCATGTAATAGGATAGGCAATTAGT 58.678 37.037 0.00 0.00 0.00 2.24
2496 2557 7.492669 CGGTCATGTAATAGGATAGGCAATTAG 59.507 40.741 0.00 0.00 0.00 1.73
2497 2558 7.327975 CGGTCATGTAATAGGATAGGCAATTA 58.672 38.462 0.00 0.00 0.00 1.40
2498 2559 6.173339 CGGTCATGTAATAGGATAGGCAATT 58.827 40.000 0.00 0.00 0.00 2.32
2499 2560 5.734720 CGGTCATGTAATAGGATAGGCAAT 58.265 41.667 0.00 0.00 0.00 3.56
2500 2561 4.562757 GCGGTCATGTAATAGGATAGGCAA 60.563 45.833 0.00 0.00 0.00 4.52
2501 2562 3.056107 GCGGTCATGTAATAGGATAGGCA 60.056 47.826 0.00 0.00 0.00 4.75
2502 2563 3.522553 GCGGTCATGTAATAGGATAGGC 58.477 50.000 0.00 0.00 0.00 3.93
2503 2564 3.513912 TGGCGGTCATGTAATAGGATAGG 59.486 47.826 0.00 0.00 0.00 2.57
2504 2565 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
2505 2566 4.161565 GGATGGCGGTCATGTAATAGGATA 59.838 45.833 0.00 0.00 35.97 2.59
2506 2567 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
2507 2568 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
2508 2569 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
2509 2570 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
2510 2571 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
2511 2572 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
2512 2573 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
2513 2574 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
2514 2575 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
2515 2576 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
2516 2577 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
2517 2578 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
2518 2579 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
2519 2580 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
2520 2581 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
2521 2582 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
2522 2583 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
2523 2584 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
2524 2585 4.275936 GGATATCTTCAACCGGTTTGGATG 59.724 45.833 19.55 14.79 41.73 3.51
2525 2586 4.461198 GGATATCTTCAACCGGTTTGGAT 58.539 43.478 19.55 21.16 42.00 3.41
2526 2587 3.371166 GGGATATCTTCAACCGGTTTGGA 60.371 47.826 19.55 15.86 42.00 3.53
2527 2588 2.949644 GGGATATCTTCAACCGGTTTGG 59.050 50.000 19.55 7.84 46.41 3.28
2528 2589 2.612212 CGGGATATCTTCAACCGGTTTG 59.388 50.000 19.55 13.53 40.79 2.93
2529 2590 2.502538 TCGGGATATCTTCAACCGGTTT 59.497 45.455 19.55 5.23 44.36 3.27
2530 2591 2.102588 CTCGGGATATCTTCAACCGGTT 59.897 50.000 15.86 15.86 44.36 4.44
2531 2592 1.687123 CTCGGGATATCTTCAACCGGT 59.313 52.381 0.00 0.00 44.36 5.28
2532 2593 1.605712 GCTCGGGATATCTTCAACCGG 60.606 57.143 14.77 0.00 44.36 5.28
2533 2594 1.341531 AGCTCGGGATATCTTCAACCG 59.658 52.381 10.16 10.16 45.52 4.44
2534 2595 3.306156 GGTAGCTCGGGATATCTTCAACC 60.306 52.174 2.05 0.00 0.00 3.77
2535 2596 3.321111 TGGTAGCTCGGGATATCTTCAAC 59.679 47.826 2.05 0.00 0.00 3.18
2536 2597 3.572642 TGGTAGCTCGGGATATCTTCAA 58.427 45.455 2.05 0.00 0.00 2.69
2537 2598 3.238788 TGGTAGCTCGGGATATCTTCA 57.761 47.619 2.05 0.00 0.00 3.02
2538 2599 4.020543 AGATGGTAGCTCGGGATATCTTC 58.979 47.826 2.05 0.00 0.00 2.87
2539 2600 4.020543 GAGATGGTAGCTCGGGATATCTT 58.979 47.826 2.05 0.00 0.00 2.40
2540 2601 3.626222 GGAGATGGTAGCTCGGGATATCT 60.626 52.174 2.05 0.00 33.19 1.98
2541 2602 2.691011 GGAGATGGTAGCTCGGGATATC 59.309 54.545 0.00 0.00 33.19 1.63
2542 2603 2.624557 GGGAGATGGTAGCTCGGGATAT 60.625 54.545 0.00 0.00 33.19 1.63
2543 2604 1.272536 GGGAGATGGTAGCTCGGGATA 60.273 57.143 0.00 0.00 33.19 2.59
2544 2605 0.543174 GGGAGATGGTAGCTCGGGAT 60.543 60.000 0.00 0.00 33.19 3.85
2545 2606 1.152525 GGGAGATGGTAGCTCGGGA 60.153 63.158 0.00 0.00 33.19 5.14
2546 2607 1.457643 TGGGAGATGGTAGCTCGGG 60.458 63.158 0.00 0.00 33.19 5.14
2547 2608 2.045280 CTGGGAGATGGTAGCTCGG 58.955 63.158 0.00 0.00 33.19 4.63
2548 2609 1.365633 GCTGGGAGATGGTAGCTCG 59.634 63.158 0.00 0.00 33.19 5.03
2549 2610 1.365633 CGCTGGGAGATGGTAGCTC 59.634 63.158 0.00 0.00 34.13 4.09
2550 2611 2.136878 CCGCTGGGAGATGGTAGCT 61.137 63.158 0.00 0.00 34.13 3.32
2551 2612 2.134287 TCCGCTGGGAGATGGTAGC 61.134 63.158 0.00 0.00 37.43 3.58
2552 2613 4.277552 TCCGCTGGGAGATGGTAG 57.722 61.111 0.00 0.00 37.43 3.18
2568 2629 5.703130 GGAGCATTTGGTTACTGGATCTATC 59.297 44.000 0.00 0.00 0.00 2.08
2569 2630 5.456763 GGGAGCATTTGGTTACTGGATCTAT 60.457 44.000 0.00 0.00 0.00 1.98
2570 2631 4.141482 GGGAGCATTTGGTTACTGGATCTA 60.141 45.833 0.00 0.00 0.00 1.98
2571 2632 3.372025 GGGAGCATTTGGTTACTGGATCT 60.372 47.826 0.00 0.00 0.00 2.75
2572 2633 2.952310 GGGAGCATTTGGTTACTGGATC 59.048 50.000 0.00 0.00 0.00 3.36
2573 2634 2.582636 AGGGAGCATTTGGTTACTGGAT 59.417 45.455 0.00 0.00 0.00 3.41
2574 2635 1.992557 AGGGAGCATTTGGTTACTGGA 59.007 47.619 0.00 0.00 0.00 3.86
2575 2636 2.094675 CAGGGAGCATTTGGTTACTGG 58.905 52.381 6.70 0.00 0.00 4.00
2576 2637 2.094675 CCAGGGAGCATTTGGTTACTG 58.905 52.381 7.32 7.32 32.88 2.74
2577 2638 1.616994 GCCAGGGAGCATTTGGTTACT 60.617 52.381 0.00 0.00 34.43 2.24
2578 2639 0.817654 GCCAGGGAGCATTTGGTTAC 59.182 55.000 0.00 0.00 34.43 2.50
2579 2640 0.324275 GGCCAGGGAGCATTTGGTTA 60.324 55.000 0.00 0.00 34.43 2.85
2580 2641 1.610379 GGCCAGGGAGCATTTGGTT 60.610 57.895 0.00 0.00 34.43 3.67
2581 2642 2.037847 GGCCAGGGAGCATTTGGT 59.962 61.111 0.00 0.00 34.43 3.67
2582 2643 1.755783 GAGGCCAGGGAGCATTTGG 60.756 63.158 5.01 0.00 35.06 3.28
2583 2644 1.755783 GGAGGCCAGGGAGCATTTG 60.756 63.158 5.01 0.00 0.00 2.32
2584 2645 1.587522 ATGGAGGCCAGGGAGCATTT 61.588 55.000 5.01 0.00 36.75 2.32
2585 2646 2.004408 GATGGAGGCCAGGGAGCATT 62.004 60.000 5.01 0.00 36.75 3.56
2586 2647 2.369291 ATGGAGGCCAGGGAGCAT 60.369 61.111 5.01 0.00 36.75 3.79
2587 2648 3.092511 GATGGAGGCCAGGGAGCA 61.093 66.667 5.01 0.00 36.75 4.26
2588 2649 4.247380 CGATGGAGGCCAGGGAGC 62.247 72.222 5.01 0.00 36.75 4.70
2589 2650 3.554342 CCGATGGAGGCCAGGGAG 61.554 72.222 5.01 0.00 36.75 4.30
2590 2651 4.088351 TCCGATGGAGGCCAGGGA 62.088 66.667 5.01 0.00 37.61 4.20
2591 2652 3.554342 CTCCGATGGAGGCCAGGG 61.554 72.222 5.01 0.00 45.43 4.45
2599 2660 0.107361 TCGCTACTCACTCCGATGGA 60.107 55.000 0.00 0.00 0.00 3.41
2600 2661 0.029567 GTCGCTACTCACTCCGATGG 59.970 60.000 0.00 0.00 31.96 3.51
2601 2662 0.029567 GGTCGCTACTCACTCCGATG 59.970 60.000 0.00 0.00 31.96 3.84
2602 2663 0.393944 TGGTCGCTACTCACTCCGAT 60.394 55.000 0.00 0.00 31.96 4.18
2603 2664 1.002990 TGGTCGCTACTCACTCCGA 60.003 57.895 0.00 0.00 0.00 4.55
2604 2665 1.136984 GTGGTCGCTACTCACTCCG 59.863 63.158 3.71 0.00 0.00 4.63
2605 2666 1.136984 CGTGGTCGCTACTCACTCC 59.863 63.158 7.87 0.00 0.00 3.85
2606 2667 0.520404 TTCGTGGTCGCTACTCACTC 59.480 55.000 7.87 0.00 36.96 3.51
2607 2668 0.240411 GTTCGTGGTCGCTACTCACT 59.760 55.000 7.87 0.00 36.96 3.41
2608 2669 1.063951 CGTTCGTGGTCGCTACTCAC 61.064 60.000 0.00 0.00 36.96 3.51
2609 2670 1.208358 CGTTCGTGGTCGCTACTCA 59.792 57.895 0.00 0.00 36.96 3.41
2610 2671 1.513586 CCGTTCGTGGTCGCTACTC 60.514 63.158 0.00 0.00 36.96 2.59
2611 2672 1.310933 ATCCGTTCGTGGTCGCTACT 61.311 55.000 0.00 0.00 36.96 2.57
2612 2673 0.864797 GATCCGTTCGTGGTCGCTAC 60.865 60.000 0.00 0.00 36.96 3.58
2613 2674 1.307355 TGATCCGTTCGTGGTCGCTA 61.307 55.000 0.00 0.00 36.96 4.26
2614 2675 2.181021 GATCCGTTCGTGGTCGCT 59.819 61.111 0.00 0.00 36.96 4.93
2615 2676 2.126228 TGATCCGTTCGTGGTCGC 60.126 61.111 0.00 0.00 36.96 5.19
2616 2677 1.071019 CACTGATCCGTTCGTGGTCG 61.071 60.000 0.00 0.00 38.55 4.79
2617 2678 1.352156 GCACTGATCCGTTCGTGGTC 61.352 60.000 0.00 0.00 32.81 4.02
2618 2679 1.374252 GCACTGATCCGTTCGTGGT 60.374 57.895 0.00 0.00 32.81 4.16
2619 2680 2.100631 GGCACTGATCCGTTCGTGG 61.101 63.158 0.00 0.00 32.81 4.94
2620 2681 2.444624 CGGCACTGATCCGTTCGTG 61.445 63.158 0.00 0.00 41.85 4.35
2621 2682 2.126071 CGGCACTGATCCGTTCGT 60.126 61.111 0.00 0.00 41.85 3.85
2627 2688 0.811616 CCAAGCTACGGCACTGATCC 60.812 60.000 0.00 0.00 41.70 3.36
2628 2689 0.175760 TCCAAGCTACGGCACTGATC 59.824 55.000 0.00 0.00 41.70 2.92
2629 2690 0.613260 TTCCAAGCTACGGCACTGAT 59.387 50.000 0.00 0.00 41.70 2.90
2630 2691 0.394938 TTTCCAAGCTACGGCACTGA 59.605 50.000 0.00 0.00 41.70 3.41
2631 2692 1.234821 TTTTCCAAGCTACGGCACTG 58.765 50.000 0.00 0.00 41.70 3.66
2632 2693 2.200373 ATTTTCCAAGCTACGGCACT 57.800 45.000 0.00 0.00 41.70 4.40
2633 2694 3.427098 GGTTATTTTCCAAGCTACGGCAC 60.427 47.826 0.00 0.00 41.70 5.01
2634 2695 2.750712 GGTTATTTTCCAAGCTACGGCA 59.249 45.455 0.00 0.00 41.70 5.69
2635 2696 2.223180 CGGTTATTTTCCAAGCTACGGC 60.223 50.000 0.00 0.00 39.06 5.68
2636 2697 2.353579 CCGGTTATTTTCCAAGCTACGG 59.646 50.000 0.00 0.00 0.00 4.02
2637 2698 2.223180 GCCGGTTATTTTCCAAGCTACG 60.223 50.000 1.90 0.00 0.00 3.51
2638 2699 2.750712 TGCCGGTTATTTTCCAAGCTAC 59.249 45.455 1.90 0.00 0.00 3.58
2639 2700 3.074675 TGCCGGTTATTTTCCAAGCTA 57.925 42.857 1.90 0.00 0.00 3.32
2640 2701 1.917872 TGCCGGTTATTTTCCAAGCT 58.082 45.000 1.90 0.00 0.00 3.74
2641 2702 2.734276 TTGCCGGTTATTTTCCAAGC 57.266 45.000 1.90 0.00 0.00 4.01
2642 2703 4.513198 TCTTTGCCGGTTATTTTCCAAG 57.487 40.909 1.90 0.00 0.00 3.61
2643 2704 4.939052 TTCTTTGCCGGTTATTTTCCAA 57.061 36.364 1.90 0.00 0.00 3.53
2644 2705 4.524714 TCATTCTTTGCCGGTTATTTTCCA 59.475 37.500 1.90 0.00 0.00 3.53
2645 2706 5.066968 TCATTCTTTGCCGGTTATTTTCC 57.933 39.130 1.90 0.00 0.00 3.13
2646 2707 6.255670 GGATTCATTCTTTGCCGGTTATTTTC 59.744 38.462 1.90 0.00 0.00 2.29
2647 2708 6.106003 GGATTCATTCTTTGCCGGTTATTTT 58.894 36.000 1.90 0.00 0.00 1.82
2648 2709 5.660460 GGATTCATTCTTTGCCGGTTATTT 58.340 37.500 1.90 0.00 0.00 1.40
2649 2710 4.202010 CGGATTCATTCTTTGCCGGTTATT 60.202 41.667 1.90 0.00 35.42 1.40
2650 2711 3.315191 CGGATTCATTCTTTGCCGGTTAT 59.685 43.478 1.90 0.00 35.42 1.89
2651 2712 2.680841 CGGATTCATTCTTTGCCGGTTA 59.319 45.455 1.90 0.00 35.42 2.85
2652 2713 1.472480 CGGATTCATTCTTTGCCGGTT 59.528 47.619 1.90 0.00 35.42 4.44
2653 2714 1.094785 CGGATTCATTCTTTGCCGGT 58.905 50.000 1.90 0.00 35.42 5.28
2654 2715 1.094785 ACGGATTCATTCTTTGCCGG 58.905 50.000 0.00 0.00 42.76 6.13
2655 2716 1.737236 TCACGGATTCATTCTTTGCCG 59.263 47.619 0.00 0.00 43.95 5.69
2656 2717 3.129287 ACATCACGGATTCATTCTTTGCC 59.871 43.478 0.00 0.00 0.00 4.52
2657 2718 4.361451 ACATCACGGATTCATTCTTTGC 57.639 40.909 0.00 0.00 0.00 3.68
2658 2719 6.025896 CAGAACATCACGGATTCATTCTTTG 58.974 40.000 0.00 0.00 0.00 2.77
2659 2720 5.707298 ACAGAACATCACGGATTCATTCTTT 59.293 36.000 0.00 0.00 0.00 2.52
2660 2721 5.248640 ACAGAACATCACGGATTCATTCTT 58.751 37.500 0.00 0.00 0.00 2.52
2661 2722 4.836825 ACAGAACATCACGGATTCATTCT 58.163 39.130 0.00 0.00 0.00 2.40
2662 2723 5.551760 AACAGAACATCACGGATTCATTC 57.448 39.130 0.00 0.00 0.00 2.67
2663 2724 7.447374 TTTAACAGAACATCACGGATTCATT 57.553 32.000 0.00 0.00 0.00 2.57
2664 2725 7.447374 TTTTAACAGAACATCACGGATTCAT 57.553 32.000 0.00 0.00 0.00 2.57
2665 2726 6.869315 TTTTAACAGAACATCACGGATTCA 57.131 33.333 0.00 0.00 0.00 2.57
2666 2727 6.581166 GGTTTTTAACAGAACATCACGGATTC 59.419 38.462 0.00 0.00 0.00 2.52
2667 2728 6.039941 TGGTTTTTAACAGAACATCACGGATT 59.960 34.615 0.00 0.00 0.00 3.01
2668 2729 5.533154 TGGTTTTTAACAGAACATCACGGAT 59.467 36.000 0.00 0.00 0.00 4.18
2669 2730 4.882427 TGGTTTTTAACAGAACATCACGGA 59.118 37.500 0.00 0.00 0.00 4.69
2670 2731 5.176407 TGGTTTTTAACAGAACATCACGG 57.824 39.130 0.00 0.00 0.00 4.94
2671 2732 7.433719 TGATTTGGTTTTTAACAGAACATCACG 59.566 33.333 0.00 0.00 0.00 4.35
2672 2733 8.641499 TGATTTGGTTTTTAACAGAACATCAC 57.359 30.769 0.00 0.00 0.00 3.06
2673 2734 9.829507 AATGATTTGGTTTTTAACAGAACATCA 57.170 25.926 0.00 0.00 0.00 3.07
2676 2737 9.883142 AGAAATGATTTGGTTTTTAACAGAACA 57.117 25.926 0.00 0.00 0.00 3.18
2678 2739 8.825745 GCAGAAATGATTTGGTTTTTAACAGAA 58.174 29.630 0.00 0.00 0.00 3.02
2679 2740 7.984050 TGCAGAAATGATTTGGTTTTTAACAGA 59.016 29.630 0.00 0.00 0.00 3.41
2680 2741 8.140677 TGCAGAAATGATTTGGTTTTTAACAG 57.859 30.769 0.00 0.00 0.00 3.16
2681 2742 8.498054 TTGCAGAAATGATTTGGTTTTTAACA 57.502 26.923 0.00 0.00 0.00 2.41
2704 2765 1.085091 GAGCAGAGTGAGCACCATTG 58.915 55.000 0.00 0.00 0.00 2.82
2705 2766 0.390866 CGAGCAGAGTGAGCACCATT 60.391 55.000 0.00 0.00 0.00 3.16
2867 2928 7.454260 AATTATCAAGAGAAAACAGACACCC 57.546 36.000 0.00 0.00 0.00 4.61
2902 2963 2.304751 GCCCTGGCATGAAAAAGATG 57.695 50.000 2.58 0.00 41.49 2.90
2922 2983 2.298729 CGGACATGGGTTTTCACCAAAT 59.701 45.455 0.00 0.00 46.43 2.32
2924 2985 1.323412 CGGACATGGGTTTTCACCAA 58.677 50.000 0.00 0.00 46.43 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.