Multiple sequence alignment - TraesCS6A01G022300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G022300 chr6A 100.000 8071 0 0 1612 9682 11169442 11161372 0.000000e+00 14905.0
1 TraesCS6A01G022300 chr6A 96.277 1719 30 4 6270 7983 10365776 10367465 0.000000e+00 2789.0
2 TraesCS6A01G022300 chr6A 100.000 1388 0 0 1 1388 11171053 11169666 0.000000e+00 2564.0
3 TraesCS6A01G022300 chr6A 95.915 1420 28 3 6565 7983 10394439 10395829 0.000000e+00 2274.0
4 TraesCS6A01G022300 chr6A 93.991 932 23 14 8164 9081 10367642 10368554 0.000000e+00 1380.0
5 TraesCS6A01G022300 chr6A 93.878 637 11 13 8164 8786 10396006 10396628 0.000000e+00 935.0
6 TraesCS6A01G022300 chr6A 94.218 294 12 1 8788 9081 10396802 10397090 2.480000e-120 444.0
7 TraesCS6A01G022300 chr6A 98.171 164 3 0 8007 8170 10367452 10367615 4.420000e-73 287.0
8 TraesCS6A01G022300 chr6A 98.171 164 3 0 8007 8170 10395816 10395979 4.420000e-73 287.0
9 TraesCS6A01G022300 chr6A 91.176 136 8 4 9078 9210 10368589 10368723 2.150000e-41 182.0
10 TraesCS6A01G022300 chr6A 91.176 136 8 4 9078 9210 10397125 10397259 2.150000e-41 182.0
11 TraesCS6A01G022300 chr6D 96.057 2536 54 20 1612 4118 9353465 9355983 0.000000e+00 4087.0
12 TraesCS6A01G022300 chr6D 96.695 1785 45 8 4118 5900 9356068 9357840 0.000000e+00 2957.0
13 TraesCS6A01G022300 chr6D 93.635 1791 51 16 6421 8170 9358135 9359903 0.000000e+00 2617.0
14 TraesCS6A01G022300 chr6D 91.897 1086 67 13 313 1388 9352370 9353444 0.000000e+00 1498.0
15 TraesCS6A01G022300 chr6D 92.555 779 29 21 8447 9210 9360206 9360970 0.000000e+00 1090.0
16 TraesCS6A01G022300 chr6D 95.208 313 14 1 5997 6308 9357843 9358155 2.430000e-135 494.0
17 TraesCS6A01G022300 chr6D 96.622 296 9 1 9387 9682 9363582 9363876 3.140000e-134 490.0
18 TraesCS6A01G022300 chr6D 88.525 183 12 5 120 294 9352117 9352298 7.620000e-51 213.0
19 TraesCS6A01G022300 chr6D 90.909 154 11 3 3451 3602 410398431 410398279 4.580000e-48 204.0
20 TraesCS6A01G022300 chr6D 95.726 117 2 2 8232 8348 9359910 9360023 1.660000e-42 185.0
21 TraesCS6A01G022300 chr6D 91.270 126 7 4 5886 6008 467773460 467773584 1.670000e-37 169.0
22 TraesCS6A01G022300 chr6D 91.765 85 7 0 5025 5109 9357106 9357190 1.710000e-22 119.0
23 TraesCS6A01G022300 chr6D 88.372 86 6 1 5166 5251 9356969 9357050 6.190000e-17 100.0
24 TraesCS6A01G022300 chr6B 89.124 1462 103 22 4118 5536 17399362 17400810 0.000000e+00 1768.0
25 TraesCS6A01G022300 chr6B 92.147 1146 67 12 1612 2752 17396834 17397961 0.000000e+00 1596.0
26 TraesCS6A01G022300 chr6B 88.889 972 56 11 6421 7363 17401761 17402709 0.000000e+00 1149.0
27 TraesCS6A01G022300 chr6B 92.250 800 41 9 2664 3448 17398018 17398811 0.000000e+00 1114.0
28 TraesCS6A01G022300 chr6B 89.575 777 43 15 8401 9152 17404895 17405658 0.000000e+00 952.0
29 TraesCS6A01G022300 chr6B 94.163 514 29 1 865 1377 17396289 17396802 0.000000e+00 782.0
30 TraesCS6A01G022300 chr6B 90.984 366 28 4 9320 9682 17410333 17410696 1.130000e-133 488.0
31 TraesCS6A01G022300 chr6B 89.175 388 31 6 5560 5938 17400804 17401189 3.160000e-129 473.0
32 TraesCS6A01G022300 chr6B 89.677 310 23 5 3776 4083 17398941 17399243 4.240000e-103 387.0
33 TraesCS6A01G022300 chr6B 87.009 331 21 6 7857 8170 17404333 17404658 4.300000e-93 353.0
34 TraesCS6A01G022300 chr6B 97.115 104 3 0 5896 5999 219879343 219879446 9.990000e-40 176.0
35 TraesCS6A01G022300 chr6B 83.163 196 16 9 8164 8346 17404683 17404874 7.780000e-36 163.0
36 TraesCS6A01G022300 chr6B 80.380 158 27 3 7487 7641 17402689 17402845 6.140000e-22 117.0
37 TraesCS6A01G022300 chr3A 80.678 295 43 11 8623 8910 10490609 10490896 5.890000e-52 217.0
38 TraesCS6A01G022300 chr3A 97.087 103 3 0 5898 6000 287684682 287684784 3.590000e-39 174.0
39 TraesCS6A01G022300 chr7A 92.105 152 9 3 3451 3600 579808374 579808524 2.740000e-50 211.0
40 TraesCS6A01G022300 chr7A 90.323 155 12 3 3451 3603 421785006 421785159 5.930000e-47 200.0
41 TraesCS6A01G022300 chr7D 90.968 155 11 3 3451 3603 34757018 34756865 1.270000e-48 206.0
42 TraesCS6A01G022300 chr7D 91.736 121 10 0 7361 7481 220974837 220974957 1.670000e-37 169.0
43 TraesCS6A01G022300 chr7D 82.482 137 16 5 8626 8762 456549879 456549751 7.950000e-21 113.0
44 TraesCS6A01G022300 chr4B 90.968 155 11 3 3451 3603 106227409 106227562 1.270000e-48 206.0
45 TraesCS6A01G022300 chr4B 95.276 127 2 1 6308 6430 128540736 128540862 2.130000e-46 198.0
46 TraesCS6A01G022300 chr4A 90.909 154 11 3 3451 3602 598724607 598724455 4.580000e-48 204.0
47 TraesCS6A01G022300 chr4A 97.436 117 2 1 6318 6434 420020479 420020364 2.130000e-46 198.0
48 TraesCS6A01G022300 chr4A 100.000 28 0 0 7481 7508 482518441 482518414 1.800000e-02 52.8
49 TraesCS6A01G022300 chr2D 91.391 151 10 3 3451 3599 79056167 79056316 4.580000e-48 204.0
50 TraesCS6A01G022300 chr2D 90.076 131 11 2 7351 7479 607675871 607675741 1.670000e-37 169.0
51 TraesCS6A01G022300 chr7B 90.728 151 11 3 3451 3599 44939554 44939703 2.130000e-46 198.0
52 TraesCS6A01G022300 chr7B 95.968 124 1 1 6308 6427 690699472 690699595 2.130000e-46 198.0
53 TraesCS6A01G022300 chr7B 94.615 130 1 3 6306 6431 552119809 552119682 7.670000e-46 196.0
54 TraesCS6A01G022300 chr7B 91.736 121 10 0 7361 7481 176003511 176003391 1.670000e-37 169.0
55 TraesCS6A01G022300 chr2A 100.000 107 0 0 6318 6424 595342798 595342692 2.130000e-46 198.0
56 TraesCS6A01G022300 chr2A 97.115 104 3 0 5896 5999 416627576 416627473 9.990000e-40 176.0
57 TraesCS6A01G022300 chr2B 93.333 135 4 2 6308 6437 573812194 573812328 2.760000e-45 195.0
58 TraesCS6A01G022300 chr3B 94.488 127 3 3 6318 6440 614894261 614894135 9.920000e-45 193.0
59 TraesCS6A01G022300 chr1B 80.534 262 40 10 9421 9677 52569733 52569988 3.570000e-44 191.0
60 TraesCS6A01G022300 chr1B 79.771 262 42 10 9421 9677 52640211 52640466 7.730000e-41 180.0
61 TraesCS6A01G022300 chr5B 95.652 115 3 2 6318 6432 462139789 462139677 5.970000e-42 183.0
62 TraesCS6A01G022300 chr5B 98.990 99 1 0 5900 5998 556139893 556139991 2.780000e-40 178.0
63 TraesCS6A01G022300 chr5B 91.667 120 10 0 7360 7479 38365122 38365241 6.010000e-37 167.0
64 TraesCS6A01G022300 chr1A 97.087 103 3 0 5902 6004 238868665 238868767 3.590000e-39 174.0
65 TraesCS6A01G022300 chr1A 91.736 121 10 0 7358 7478 30182651 30182771 1.670000e-37 169.0
66 TraesCS6A01G022300 chr5D 95.370 108 3 2 5895 6002 180472056 180472161 4.650000e-38 171.0
67 TraesCS6A01G022300 chr5D 93.103 116 3 4 5902 6016 565043188 565043077 2.160000e-36 165.0
68 TraesCS6A01G022300 chr3D 97.959 98 2 0 5902 5999 582796863 582796960 4.650000e-38 171.0
69 TraesCS6A01G022300 chr3D 89.844 128 12 1 7352 7478 614914899 614915026 7.780000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G022300 chr6A 11161372 11171053 9681 True 8734.500000 14905 100.000000 1 9682 2 chr6A.!!$R1 9681
1 TraesCS6A01G022300 chr6A 10365776 10368723 2947 False 1159.500000 2789 94.903750 6270 9210 4 chr6A.!!$F1 2940
2 TraesCS6A01G022300 chr6A 10394439 10397259 2820 False 824.400000 2274 94.671600 6565 9210 5 chr6A.!!$F2 2645
3 TraesCS6A01G022300 chr6D 9352117 9363876 11759 False 1259.090909 4087 93.368818 120 9682 11 chr6D.!!$F2 9562
4 TraesCS6A01G022300 chr6B 17396289 17405658 9369 False 804.909091 1768 88.686545 865 9152 11 chr6B.!!$F3 8287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 711 0.037046 GGTCTTGCCTTGCCAAATGG 60.037 55.000 0.00 0.00 38.53 3.16 F
666 734 1.263217 CGACCACAGTTTCCCTTTTCG 59.737 52.381 0.00 0.00 0.00 3.46 F
2519 2605 1.696063 ATTGCTTTGCCTGCCGATAT 58.304 45.000 0.00 0.00 0.00 1.63 F
3392 3636 4.515944 ACAATGGTATGGAAACGAAACGAA 59.484 37.500 0.00 0.00 0.00 3.85 F
4510 4884 1.066858 TCTCCAGTTCGAAGGATGCAC 60.067 52.381 6.60 0.00 32.53 4.57 F
5917 6323 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12 F
6055 6646 0.107508 TTCACTAGAGCATGCCAGGC 60.108 55.000 15.66 3.66 0.00 4.85 F
7732 8385 1.238439 AATTGCTGTGGTCCTTCACG 58.762 50.000 0.00 0.00 40.31 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2593 2679 3.118905 TGATGTGATCACGGTTGACAA 57.881 42.857 20.54 0.96 33.38 3.18 R
3196 3440 2.642139 TTCCTGCGTAAGTAACCTCG 57.358 50.000 0.00 0.00 41.68 4.63 R
3445 3689 1.342174 GTGAACGGAGGGAGTAACACA 59.658 52.381 0.00 0.00 33.05 3.72 R
4531 4905 1.618837 GAGTGTGAGGCCAGTAGTTGA 59.381 52.381 5.01 0.00 0.00 3.18 R
6722 7343 1.373999 AGCACTCGCAGCTGAGTTC 60.374 57.895 20.43 7.53 46.85 3.01 R
7455 8106 0.819582 TCACTCCGTCCCGAATTACC 59.180 55.000 0.00 0.00 0.00 2.85 R
8371 10554 1.098050 AATTCAGCGTCCAGGCATTC 58.902 50.000 0.00 0.00 34.64 2.67 R
9210 11635 0.250901 AGCCATGACACCAACCTGTC 60.251 55.000 0.00 0.00 40.98 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.806339 CGCCTTCCTCCCTCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
21 22 2.770475 GCCTTCCTCCCTCCCCTC 60.770 72.222 0.00 0.00 0.00 4.30
22 23 3.124088 CCTTCCTCCCTCCCCTCT 58.876 66.667 0.00 0.00 0.00 3.69
23 24 1.074850 CCTTCCTCCCTCCCCTCTC 60.075 68.421 0.00 0.00 0.00 3.20
24 25 1.598856 CCTTCCTCCCTCCCCTCTCT 61.599 65.000 0.00 0.00 0.00 3.10
25 26 0.398381 CTTCCTCCCTCCCCTCTCTG 60.398 65.000 0.00 0.00 0.00 3.35
26 27 2.445654 CCTCCCTCCCCTCTCTGC 60.446 72.222 0.00 0.00 0.00 4.26
27 28 2.695597 CTCCCTCCCCTCTCTGCT 59.304 66.667 0.00 0.00 0.00 4.24
28 29 1.761667 CTCCCTCCCCTCTCTGCTG 60.762 68.421 0.00 0.00 0.00 4.41
29 30 2.040278 CCCTCCCCTCTCTGCTGT 59.960 66.667 0.00 0.00 0.00 4.40
30 31 2.365586 CCCTCCCCTCTCTGCTGTG 61.366 68.421 0.00 0.00 0.00 3.66
31 32 2.583520 CTCCCCTCTCTGCTGTGC 59.416 66.667 0.00 0.00 0.00 4.57
32 33 3.005539 TCCCCTCTCTGCTGTGCC 61.006 66.667 0.00 0.00 0.00 5.01
33 34 4.106925 CCCCTCTCTGCTGTGCCC 62.107 72.222 0.00 0.00 0.00 5.36
34 35 4.463879 CCCTCTCTGCTGTGCCCG 62.464 72.222 0.00 0.00 0.00 6.13
87 88 4.415332 CGCTTGCTTGCTGGCTGG 62.415 66.667 3.49 0.00 0.00 4.85
88 89 4.736896 GCTTGCTTGCTGGCTGGC 62.737 66.667 0.00 0.00 0.00 4.85
89 90 4.415332 CTTGCTTGCTGGCTGGCG 62.415 66.667 0.00 0.00 34.52 5.69
254 255 0.828343 GTAGCCTCTGCCTACGGGAT 60.828 60.000 0.00 0.00 38.69 3.85
256 257 2.423446 CCTCTGCCTACGGGATGC 59.577 66.667 0.00 0.00 33.58 3.91
258 259 1.365633 CTCTGCCTACGGGATGCTC 59.634 63.158 0.00 0.00 33.58 4.26
263 264 1.227380 CCTACGGGATGCTCTGTGC 60.227 63.158 0.00 0.00 37.15 4.57
272 273 1.203441 ATGCTCTGTGCTCTTCCCCA 61.203 55.000 3.20 0.00 43.37 4.96
273 274 1.376553 GCTCTGTGCTCTTCCCCAC 60.377 63.158 0.00 0.00 38.95 4.61
275 276 1.821061 CTCTGTGCTCTTCCCCACGT 61.821 60.000 0.00 0.00 34.77 4.49
276 277 0.541063 TCTGTGCTCTTCCCCACGTA 60.541 55.000 0.00 0.00 34.77 3.57
277 278 0.108615 CTGTGCTCTTCCCCACGTAG 60.109 60.000 0.00 0.00 34.77 3.51
278 279 1.448013 GTGCTCTTCCCCACGTAGC 60.448 63.158 0.00 0.00 0.00 3.58
279 280 1.609501 TGCTCTTCCCCACGTAGCT 60.610 57.895 5.87 0.00 34.28 3.32
280 281 0.323999 TGCTCTTCCCCACGTAGCTA 60.324 55.000 5.87 0.00 34.28 3.32
299 308 3.594775 CCTTGTGCTTGCCGTGCA 61.595 61.111 0.00 0.00 38.19 4.57
301 310 4.268939 TTGTGCTTGCCGTGCAGC 62.269 61.111 0.00 10.80 40.61 5.25
304 313 4.631247 TGCTTGCCGTGCAGCTCT 62.631 61.111 15.39 0.00 40.61 4.09
315 377 2.188994 CAGCTCTGCCTACTGCCC 59.811 66.667 0.00 0.00 40.16 5.36
350 416 3.245016 TGGTCTGCAAGGATCACAGAAAT 60.245 43.478 8.11 0.00 41.80 2.17
357 423 4.391830 GCAAGGATCACAGAAATCGTTACA 59.608 41.667 0.00 0.00 31.85 2.41
372 438 2.747446 CGTTACAAGGAACAATCTGGGG 59.253 50.000 0.00 0.00 0.00 4.96
375 441 2.876581 ACAAGGAACAATCTGGGGTTC 58.123 47.619 0.00 0.00 42.00 3.62
381 447 3.459969 GGAACAATCTGGGGTTCTCCTAT 59.540 47.826 0.00 0.00 42.29 2.57
393 459 5.073280 GGGGTTCTCCTATATGCTTTAGGTT 59.927 44.000 6.95 0.00 37.94 3.50
395 461 7.037514 GGGGTTCTCCTATATGCTTTAGGTTAT 60.038 40.741 6.95 0.00 37.94 1.89
409 475 9.681062 TGCTTTAGGTTATATATAAGAATGGCC 57.319 33.333 5.39 0.00 0.00 5.36
411 477 9.326413 CTTTAGGTTATATATAAGAATGGCCGG 57.674 37.037 5.39 0.00 0.00 6.13
412 478 6.886178 AGGTTATATATAAGAATGGCCGGT 57.114 37.500 1.90 0.00 0.00 5.28
413 479 7.266905 AGGTTATATATAAGAATGGCCGGTT 57.733 36.000 1.90 0.00 0.00 4.44
415 481 6.541278 GGTTATATATAAGAATGGCCGGTTCC 59.459 42.308 14.98 0.00 0.00 3.62
416 482 2.943036 TATAAGAATGGCCGGTTCCC 57.057 50.000 14.98 0.00 0.00 3.97
417 483 1.222567 ATAAGAATGGCCGGTTCCCT 58.777 50.000 14.98 7.35 0.00 4.20
418 484 1.882308 TAAGAATGGCCGGTTCCCTA 58.118 50.000 14.98 6.56 0.00 3.53
419 485 0.255033 AAGAATGGCCGGTTCCCTAC 59.745 55.000 14.98 0.00 0.00 3.18
430 496 2.618045 CGGTTCCCTACCTGATTTGCTT 60.618 50.000 0.00 0.00 45.40 3.91
434 500 4.112634 TCCCTACCTGATTTGCTTGTTT 57.887 40.909 0.00 0.00 0.00 2.83
438 504 3.375782 ACCTGATTTGCTTGTTTGCTC 57.624 42.857 0.00 0.00 0.00 4.26
439 505 2.287788 ACCTGATTTGCTTGTTTGCTCG 60.288 45.455 0.00 0.00 0.00 5.03
440 506 2.287788 CCTGATTTGCTTGTTTGCTCGT 60.288 45.455 0.00 0.00 0.00 4.18
443 509 0.730265 TTTGCTTGTTTGCTCGTCGT 59.270 45.000 0.00 0.00 0.00 4.34
447 513 1.209128 CTTGTTTGCTCGTCGTGTCT 58.791 50.000 0.00 0.00 0.00 3.41
448 514 0.927537 TTGTTTGCTCGTCGTGTCTG 59.072 50.000 0.00 0.00 0.00 3.51
449 515 0.101579 TGTTTGCTCGTCGTGTCTGA 59.898 50.000 0.00 0.00 0.00 3.27
450 516 0.778815 GTTTGCTCGTCGTGTCTGAG 59.221 55.000 0.00 0.00 0.00 3.35
451 517 0.384309 TTTGCTCGTCGTGTCTGAGT 59.616 50.000 0.00 0.00 32.32 3.41
454 520 0.317938 GCTCGTCGTGTCTGAGTGTT 60.318 55.000 0.00 0.00 32.32 3.32
455 521 1.676057 CTCGTCGTGTCTGAGTGTTC 58.324 55.000 0.00 0.00 0.00 3.18
456 522 1.002792 CTCGTCGTGTCTGAGTGTTCA 60.003 52.381 0.00 0.00 0.00 3.18
458 524 1.979469 CGTCGTGTCTGAGTGTTCATC 59.021 52.381 0.00 0.00 31.68 2.92
459 525 1.979469 GTCGTGTCTGAGTGTTCATCG 59.021 52.381 0.00 0.00 31.68 3.84
460 526 1.607148 TCGTGTCTGAGTGTTCATCGT 59.393 47.619 0.00 0.00 31.68 3.73
461 527 2.034179 TCGTGTCTGAGTGTTCATCGTT 59.966 45.455 0.00 0.00 31.68 3.85
462 528 2.153817 CGTGTCTGAGTGTTCATCGTTG 59.846 50.000 0.00 0.00 31.68 4.10
463 529 2.096713 GTGTCTGAGTGTTCATCGTTGC 60.097 50.000 0.00 0.00 31.68 4.17
464 530 1.461127 GTCTGAGTGTTCATCGTTGCC 59.539 52.381 0.00 0.00 31.68 4.52
465 531 1.069978 TCTGAGTGTTCATCGTTGCCA 59.930 47.619 0.00 0.00 31.68 4.92
470 536 3.609853 AGTGTTCATCGTTGCCACATAT 58.390 40.909 14.47 2.02 30.99 1.78
497 563 2.040278 TGGAACAGCAGTAGAAGCCAAT 59.960 45.455 0.00 0.00 0.00 3.16
498 564 3.263170 TGGAACAGCAGTAGAAGCCAATA 59.737 43.478 0.00 0.00 0.00 1.90
502 568 5.878406 ACAGCAGTAGAAGCCAATACTAT 57.122 39.130 0.00 0.00 31.10 2.12
533 599 4.885907 AGGATTGGAGACGAGTATTTACGA 59.114 41.667 0.00 0.00 0.00 3.43
537 603 7.325579 GGATTGGAGACGAGTATTTACGATTAC 59.674 40.741 0.00 0.00 0.00 1.89
547 613 6.772078 AGTATTTACGATTACTGTTTGCAGC 58.228 36.000 0.00 0.00 46.30 5.25
556 622 3.024043 GTTTGCAGCCGTGTTGCG 61.024 61.111 7.87 0.00 42.53 4.85
565 631 1.282570 CCGTGTTGCGCATTGTTCT 59.717 52.632 12.75 0.00 39.71 3.01
615 683 9.507329 TGTTTAGCTTTATGTGAAGATCTCTTT 57.493 29.630 0.00 0.00 36.11 2.52
622 690 9.442047 CTTTATGTGAAGATCTCTTTGTAAGGT 57.558 33.333 0.00 0.00 36.11 3.50
624 692 5.470368 TGTGAAGATCTCTTTGTAAGGTCG 58.530 41.667 0.00 0.00 36.11 4.79
643 711 0.037046 GGTCTTGCCTTGCCAAATGG 60.037 55.000 0.00 0.00 38.53 3.16
666 734 1.263217 CGACCACAGTTTCCCTTTTCG 59.737 52.381 0.00 0.00 0.00 3.46
671 739 3.881089 CCACAGTTTCCCTTTTCGTTAGT 59.119 43.478 0.00 0.00 0.00 2.24
689 757 2.476199 AGTGCCCTCTCTATCTGCTTT 58.524 47.619 0.00 0.00 0.00 3.51
692 760 4.657969 AGTGCCCTCTCTATCTGCTTTTAT 59.342 41.667 0.00 0.00 0.00 1.40
717 785 6.906157 ATCTCAATCTGGTTGTTGAAATGT 57.094 33.333 0.00 0.00 38.95 2.71
727 795 4.097892 GGTTGTTGAAATGTGAACCTCTGT 59.902 41.667 0.00 0.00 34.43 3.41
732 800 4.136796 TGAAATGTGAACCTCTGTCTTGG 58.863 43.478 0.00 0.00 0.00 3.61
733 801 4.141505 TGAAATGTGAACCTCTGTCTTGGA 60.142 41.667 0.00 0.00 0.00 3.53
783 851 4.679373 AAGCATAATGATCTCCAGACGT 57.321 40.909 0.00 0.00 0.00 4.34
798 866 3.871006 CCAGACGTAATTGCAATGCTAGA 59.129 43.478 13.82 0.00 0.00 2.43
842 910 3.117550 TGCATGTTAAGGTATGATGGCCT 60.118 43.478 3.32 0.00 36.51 5.19
846 914 3.287222 GTTAAGGTATGATGGCCTGCAA 58.713 45.455 3.32 0.00 34.90 4.08
902 973 6.835488 ACTATTTGTGTTTGGGATCTATGCAT 59.165 34.615 3.79 3.79 0.00 3.96
925 996 7.629222 GCATCTGTGTGTTTTATATTTGCCTCT 60.629 37.037 0.00 0.00 0.00 3.69
1025 1096 2.281692 TCGCCAACAGCAGCATGT 60.282 55.556 0.00 0.00 44.04 3.21
1041 1112 3.707102 AGCATGTACCTCTTAGGACTTCC 59.293 47.826 0.00 0.00 37.67 3.46
1194 1266 6.034683 CGGTATTACTGTGAAAGAACTACTGC 59.965 42.308 0.00 0.00 0.00 4.40
1212 1284 5.489792 ACTGCTGATAAGGTTCTTTCTGA 57.510 39.130 0.00 0.00 0.00 3.27
1379 1451 4.285260 ACCGATAAAGACTTTGGTACCACT 59.715 41.667 16.04 5.39 0.00 4.00
1383 1455 6.649557 CGATAAAGACTTTGGTACCACTTCTT 59.350 38.462 16.04 18.32 0.00 2.52
1671 1743 3.399644 TCCCTTGGTGACATTTCCCTTAA 59.600 43.478 0.00 0.00 42.32 1.85
1828 1900 5.048013 CGGAGACTATGATAATACCAGCACA 60.048 44.000 0.00 0.00 0.00 4.57
1897 1969 5.659440 ACAAACAACAATTCACTTGACCT 57.341 34.783 0.00 0.00 38.29 3.85
1900 1972 4.045636 ACAACAATTCACTTGACCTTGC 57.954 40.909 0.00 0.00 38.29 4.01
1929 2001 5.362556 TTCTTAGCTGACTTCATTGTTGC 57.637 39.130 0.00 0.00 0.00 4.17
1962 2034 5.186198 GCACCATAGATGTTACTTTGGACT 58.814 41.667 10.95 0.00 39.95 3.85
1985 2057 5.571784 TTGACTTGCATCTTCCATGAATC 57.428 39.130 0.00 0.00 0.00 2.52
2265 2346 7.665559 AGTGAAGGCTTATCTTGATGTTTGTTA 59.334 33.333 0.00 0.00 0.00 2.41
2270 2351 9.686683 AGGCTTATCTTGATGTTTGTTAGTAAT 57.313 29.630 0.00 0.00 0.00 1.89
2360 2441 5.142061 TGGTATTGTTTCTTGCGAGTAGA 57.858 39.130 0.00 0.00 0.00 2.59
2480 2566 5.045872 GCCTTGCCAAGCTATGAAAAATAG 58.954 41.667 0.00 0.00 0.00 1.73
2488 2574 6.092122 CCAAGCTATGAAAAATAGTCACGTGA 59.908 38.462 15.76 15.76 0.00 4.35
2519 2605 1.696063 ATTGCTTTGCCTGCCGATAT 58.304 45.000 0.00 0.00 0.00 1.63
2570 2656 6.086871 GCTCTACCAAAGTTCTTGCATAAAC 58.913 40.000 4.05 4.05 0.00 2.01
3126 3370 4.583871 GATGGACAGACATCAAGGAAGTT 58.416 43.478 0.00 0.00 45.11 2.66
3208 3452 5.049267 TGTTTGAAATGCCGAGGTTACTTAC 60.049 40.000 0.00 0.00 0.00 2.34
3384 3628 6.586082 GTGTTCATCAACAATGGTATGGAAAC 59.414 38.462 0.00 0.00 44.32 2.78
3392 3636 4.515944 ACAATGGTATGGAAACGAAACGAA 59.484 37.500 0.00 0.00 0.00 3.85
3594 3840 7.608376 TCCAAAACATCTATATTTGTCAACGGA 59.392 33.333 0.00 0.00 33.31 4.69
3599 3845 5.943349 TCTATATTTGTCAACGGAGGGAA 57.057 39.130 0.00 0.00 0.00 3.97
3619 3865 9.462606 GAGGGAATAGTGAAAATAGGAAAAAGA 57.537 33.333 0.00 0.00 0.00 2.52
3630 3876 9.503427 GAAAATAGGAAAAAGATAATGTGGACG 57.497 33.333 0.00 0.00 0.00 4.79
3645 3891 2.482721 GTGGACGGTGGTCTTACATTTG 59.517 50.000 0.00 0.00 42.97 2.32
3733 3979 8.488651 AAATAGACATACTTTGGTCCTTTACG 57.511 34.615 0.00 0.00 34.58 3.18
3742 3988 3.665745 TGGTCCTTTACGTACTCAACC 57.334 47.619 0.00 2.12 0.00 3.77
3807 4053 7.891498 ACACTACTTTTGGGAACTAAATGTT 57.109 32.000 2.91 0.00 42.38 2.71
4375 4741 8.632679 CCAACAGGTACAATATCTTTTGCATAT 58.367 33.333 0.00 0.00 27.83 1.78
4422 4788 2.417097 GTTTGCCTGGTTTGCGCT 59.583 55.556 9.73 0.00 0.00 5.92
4466 4840 7.060383 CACATCTCCTTATATGTGGAAGACT 57.940 40.000 7.41 0.00 45.94 3.24
4467 4841 7.504403 CACATCTCCTTATATGTGGAAGACTT 58.496 38.462 7.41 0.00 45.94 3.01
4468 4842 8.642432 CACATCTCCTTATATGTGGAAGACTTA 58.358 37.037 7.41 0.00 45.94 2.24
4469 4843 8.643324 ACATCTCCTTATATGTGGAAGACTTAC 58.357 37.037 0.00 0.00 35.06 2.34
4510 4884 1.066858 TCTCCAGTTCGAAGGATGCAC 60.067 52.381 6.60 0.00 32.53 4.57
4531 4905 5.380043 CACTCTTAACCAATCCCATATGCT 58.620 41.667 0.00 0.00 0.00 3.79
4687 5061 1.045407 TGGTGAAACTCGTGGCTACT 58.955 50.000 0.00 0.00 36.74 2.57
4745 5119 2.111878 GTGGCAGCCTGTGTCAGT 59.888 61.111 14.15 0.00 43.08 3.41
4993 5370 5.023533 CTAAAGAAGCAGGCACTACCATA 57.976 43.478 0.00 0.00 43.14 2.74
5220 5606 5.078411 TCTCTGATGCTTCCTTTGTCTAC 57.922 43.478 0.00 0.00 0.00 2.59
5339 5729 4.285517 AGCATGGACATTCTAGGATAGTGG 59.714 45.833 0.00 0.00 40.38 4.00
5340 5730 4.284490 GCATGGACATTCTAGGATAGTGGA 59.716 45.833 0.00 0.00 40.38 4.02
5341 5731 5.788450 CATGGACATTCTAGGATAGTGGAC 58.212 45.833 0.00 0.00 40.38 4.02
5342 5732 5.144159 TGGACATTCTAGGATAGTGGACT 57.856 43.478 0.00 0.00 40.38 3.85
5343 5733 5.529289 TGGACATTCTAGGATAGTGGACTT 58.471 41.667 0.00 0.00 40.38 3.01
5344 5734 5.598830 TGGACATTCTAGGATAGTGGACTTC 59.401 44.000 0.00 0.00 40.38 3.01
5345 5735 5.598830 GGACATTCTAGGATAGTGGACTTCA 59.401 44.000 0.00 0.00 40.38 3.02
5417 5815 4.473559 CCCTAGGTTGGATGGTAAGAGAAA 59.526 45.833 8.29 0.00 0.00 2.52
5481 5879 3.706594 CTGAGAATACTGTAAGCCTCCCA 59.293 47.826 0.00 0.00 37.60 4.37
5606 6004 6.707440 TTTCCTGCTCATTTCAACAGTTAA 57.293 33.333 0.00 0.00 0.00 2.01
5618 6016 0.404426 ACAGTTAACTGAAGGGGGCC 59.596 55.000 36.14 0.00 46.59 5.80
5653 6051 7.849804 TTCTGAAGGTGAGCAGTAAATTATC 57.150 36.000 0.00 0.00 33.90 1.75
5657 6055 5.041191 AGGTGAGCAGTAAATTATCCCTG 57.959 43.478 0.00 0.00 0.00 4.45
5786 6186 2.152016 GTGTGGTACTTTGGGCTCTTC 58.848 52.381 0.00 0.00 0.00 2.87
5847 6248 6.480651 ACGTATTGTTCTGTTGTGTTGTATCA 59.519 34.615 0.00 0.00 0.00 2.15
5915 6321 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
5916 6322 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
5917 6323 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
5921 6327 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5926 6332 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
5927 6333 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
5928 6334 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
5929 6335 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
5930 6336 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
5931 6337 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5933 6339 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
5934 6340 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
5935 6341 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
5936 6342 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
5938 6344 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
5939 6345 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
5943 6349 8.535690 AATAAGTGACTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
5947 6490 7.723324 AGTGACTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
5949 6492 7.652507 GTGACTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
5973 6516 9.310716 AGTACAAAGTTAGTACAAACTTGAGTC 57.689 33.333 2.97 0.00 46.40 3.36
5975 6518 7.971455 ACAAAGTTAGTACAAACTTGAGTCAC 58.029 34.615 2.97 0.00 46.40 3.67
5978 6521 9.880157 AAAGTTAGTACAAACTTGAGTCACTTA 57.120 29.630 2.97 0.00 46.40 2.24
5984 6527 9.391006 AGTACAAACTTGAGTCACTTATTTTGA 57.609 29.630 11.12 0.00 29.00 2.69
5988 6579 6.771188 ACTTGAGTCACTTATTTTGAGACG 57.229 37.500 0.00 0.00 34.56 4.18
6055 6646 0.107508 TTCACTAGAGCATGCCAGGC 60.108 55.000 15.66 3.66 0.00 4.85
6409 7030 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
6673 7294 3.840666 TCTCAAAGACCTGGCAGTTCTAT 59.159 43.478 15.37 3.24 0.00 1.98
6726 7347 2.736236 CTGCGAGTGCTGCGAACT 60.736 61.111 0.00 0.00 43.34 3.01
6727 7348 2.724708 CTGCGAGTGCTGCGAACTC 61.725 63.158 9.42 9.42 43.34 3.01
6728 7349 2.734723 GCGAGTGCTGCGAACTCA 60.735 61.111 17.10 0.00 43.53 3.41
6729 7350 2.724708 GCGAGTGCTGCGAACTCAG 61.725 63.158 17.10 11.79 43.53 3.35
6735 7356 2.431430 CTGCGAACTCAGCTGCGA 60.431 61.111 11.40 0.00 35.28 5.10
6736 7357 2.431430 TGCGAACTCAGCTGCGAG 60.431 61.111 11.40 16.18 39.05 5.03
6738 7359 2.724708 GCGAACTCAGCTGCGAGTG 61.725 63.158 21.45 13.98 45.56 3.51
6739 7360 2.724708 CGAACTCAGCTGCGAGTGC 61.725 63.158 21.45 19.31 45.56 4.40
6740 7361 1.373999 GAACTCAGCTGCGAGTGCT 60.374 57.895 21.45 11.33 45.56 4.40
7455 8106 5.745294 CCATTTTTATCCATTTCTGCGACAG 59.255 40.000 0.00 0.00 0.00 3.51
7694 8347 5.220931 GGCACCAAAGCTTATCAGTAGATTG 60.221 44.000 0.00 0.00 33.58 2.67
7724 8377 5.535753 AAGCTTTTCTTAATTGCTGTGGT 57.464 34.783 0.00 0.00 33.96 4.16
7732 8385 1.238439 AATTGCTGTGGTCCTTCACG 58.762 50.000 0.00 0.00 40.31 4.35
7839 8539 5.565439 GCTTTCAGTTGAACCAATATGCAGT 60.565 40.000 0.00 0.00 33.13 4.40
7840 8540 6.349280 GCTTTCAGTTGAACCAATATGCAGTA 60.349 38.462 0.00 0.00 33.13 2.74
7841 8541 7.629222 GCTTTCAGTTGAACCAATATGCAGTAT 60.629 37.037 0.00 0.00 33.13 2.12
7842 8542 8.800370 TTTCAGTTGAACCAATATGCAGTATA 57.200 30.769 0.00 0.00 33.13 1.47
8536 10721 5.702670 CCCTGTCTATTATTATGCACCTGTG 59.297 44.000 0.00 0.00 0.00 3.66
8538 10723 6.648310 CCTGTCTATTATTATGCACCTGTGAG 59.352 42.308 0.51 0.00 0.00 3.51
8539 10724 5.991606 TGTCTATTATTATGCACCTGTGAGC 59.008 40.000 0.51 0.00 0.00 4.26
8540 10725 5.409826 GTCTATTATTATGCACCTGTGAGCC 59.590 44.000 0.51 0.00 0.00 4.70
8541 10726 3.643199 TTATTATGCACCTGTGAGCCA 57.357 42.857 0.51 0.00 0.00 4.75
8542 10727 2.512692 ATTATGCACCTGTGAGCCAA 57.487 45.000 0.51 0.00 0.00 4.52
8543 10728 1.533625 TTATGCACCTGTGAGCCAAC 58.466 50.000 0.51 0.00 0.00 3.77
8544 10729 0.399833 TATGCACCTGTGAGCCAACA 59.600 50.000 0.51 0.00 0.00 3.33
8545 10730 0.251474 ATGCACCTGTGAGCCAACAT 60.251 50.000 0.51 0.00 0.00 2.71
8546 10731 0.399833 TGCACCTGTGAGCCAACATA 59.600 50.000 0.51 0.00 0.00 2.29
8547 10732 0.804989 GCACCTGTGAGCCAACATAC 59.195 55.000 0.51 0.00 0.00 2.39
8548 10733 1.881925 GCACCTGTGAGCCAACATACA 60.882 52.381 0.51 0.00 0.00 2.29
8549 10734 2.715046 CACCTGTGAGCCAACATACAT 58.285 47.619 0.00 0.00 0.00 2.29
8570 10767 6.527423 ACATGCCTCTTTTGAAATGAAATGT 58.473 32.000 0.00 9.00 0.00 2.71
8626 10832 2.995466 TCGTCCGTTCTAATCGTGTT 57.005 45.000 0.00 0.00 0.00 3.32
8929 11312 6.019398 CACCATAGACGCGATGTTGTAAATTA 60.019 38.462 15.93 0.00 0.00 1.40
8930 11313 6.535865 ACCATAGACGCGATGTTGTAAATTAA 59.464 34.615 15.93 0.00 0.00 1.40
8984 11367 4.110072 CCCCTGGGATCATGATATTCTCT 58.890 47.826 16.20 0.00 37.50 3.10
9114 11536 8.654997 AGATACTGTGGTGCTATTGAATTCTAT 58.345 33.333 7.05 7.32 0.00 1.98
9146 11568 0.893270 TGCGTGAATTGGGGTTCCAG 60.893 55.000 0.00 0.00 45.04 3.86
9152 11574 2.171003 GAATTGGGGTTCCAGGAAGTG 58.829 52.381 0.54 0.00 45.04 3.16
9153 11575 1.158007 ATTGGGGTTCCAGGAAGTGT 58.842 50.000 0.54 0.00 45.04 3.55
9154 11576 0.184933 TTGGGGTTCCAGGAAGTGTG 59.815 55.000 0.54 0.00 45.04 3.82
9202 11627 3.178267 ACTGTGTGAAAATGTTGTTGCG 58.822 40.909 0.00 0.00 0.00 4.85
9210 11635 1.837538 AATGTTGTTGCGTCCGGTCG 61.838 55.000 17.02 17.02 0.00 4.79
9212 11637 2.659244 TTGTTGCGTCCGGTCGAC 60.659 61.111 25.18 14.82 38.21 4.20
9213 11638 3.427598 TTGTTGCGTCCGGTCGACA 62.428 57.895 25.18 17.23 42.07 4.35
9214 11639 3.103911 GTTGCGTCCGGTCGACAG 61.104 66.667 25.18 13.87 42.07 3.51
9215 11640 4.351938 TTGCGTCCGGTCGACAGG 62.352 66.667 26.63 26.63 42.07 4.00
9217 11642 4.353437 GCGTCCGGTCGACAGGTT 62.353 66.667 29.97 0.00 42.07 3.50
9220 11645 2.522436 TCCGGTCGACAGGTTGGT 60.522 61.111 29.97 0.00 32.79 3.67
9221 11646 2.357034 CCGGTCGACAGGTTGGTG 60.357 66.667 24.65 0.00 0.00 4.17
9224 11649 1.444250 GGTCGACAGGTTGGTGTCA 59.556 57.895 18.91 0.00 46.19 3.58
9226 11651 1.148310 GTCGACAGGTTGGTGTCATG 58.852 55.000 11.55 0.00 46.19 3.07
9227 11652 0.034756 TCGACAGGTTGGTGTCATGG 59.965 55.000 4.97 0.00 46.19 3.66
9228 11653 1.577328 CGACAGGTTGGTGTCATGGC 61.577 60.000 4.97 0.00 46.19 4.40
9229 11654 0.250901 GACAGGTTGGTGTCATGGCT 60.251 55.000 0.00 0.00 45.34 4.75
9230 11655 0.185901 ACAGGTTGGTGTCATGGCTT 59.814 50.000 0.00 0.00 0.00 4.35
9231 11656 1.423541 ACAGGTTGGTGTCATGGCTTA 59.576 47.619 0.00 0.00 0.00 3.09
9232 11657 2.041620 ACAGGTTGGTGTCATGGCTTAT 59.958 45.455 0.00 0.00 0.00 1.73
9234 11659 2.308570 AGGTTGGTGTCATGGCTTATCA 59.691 45.455 0.00 0.00 0.00 2.15
9239 11664 3.134458 GGTGTCATGGCTTATCACTAGC 58.866 50.000 0.00 0.00 37.91 3.42
9240 11665 3.432186 GGTGTCATGGCTTATCACTAGCA 60.432 47.826 0.00 0.00 40.42 3.49
9241 11666 3.557595 GTGTCATGGCTTATCACTAGCAC 59.442 47.826 0.00 0.00 40.42 4.40
9244 11669 3.321968 TCATGGCTTATCACTAGCACGAT 59.678 43.478 0.00 0.00 40.42 3.73
9245 11670 3.371102 TGGCTTATCACTAGCACGATC 57.629 47.619 0.00 0.00 40.42 3.69
9246 11671 2.035961 TGGCTTATCACTAGCACGATCC 59.964 50.000 0.00 0.00 40.42 3.36
9248 11673 2.922758 GCTTATCACTAGCACGATCCGG 60.923 54.545 0.00 0.00 38.51 5.14
9249 11674 0.596577 TATCACTAGCACGATCCGGC 59.403 55.000 0.00 0.00 0.00 6.13
9250 11675 1.391933 ATCACTAGCACGATCCGGCA 61.392 55.000 0.00 0.00 0.00 5.69
9251 11676 1.878522 CACTAGCACGATCCGGCAC 60.879 63.158 0.00 0.00 0.00 5.01
9252 11677 2.279517 CTAGCACGATCCGGCACC 60.280 66.667 0.00 0.00 0.00 5.01
9253 11678 3.792053 CTAGCACGATCCGGCACCC 62.792 68.421 0.00 0.00 0.00 4.61
9257 11682 4.175337 ACGATCCGGCACCCCATG 62.175 66.667 0.00 0.00 0.00 3.66
9268 11693 0.963962 CACCCCATGCATTATCCAGC 59.036 55.000 0.00 0.00 0.00 4.85
9269 11694 0.538057 ACCCCATGCATTATCCAGCG 60.538 55.000 0.00 0.00 0.00 5.18
9270 11695 1.582968 CCCATGCATTATCCAGCGC 59.417 57.895 0.00 0.00 0.00 5.92
9271 11696 1.208358 CCATGCATTATCCAGCGCG 59.792 57.895 0.00 0.00 0.00 6.86
9272 11697 1.208358 CATGCATTATCCAGCGCGG 59.792 57.895 8.83 11.37 0.00 6.46
9307 14072 6.442513 AAATGCATACTCTCACTTTTAGCC 57.557 37.500 0.00 0.00 0.00 3.93
9308 14073 4.826274 TGCATACTCTCACTTTTAGCCT 57.174 40.909 0.00 0.00 0.00 4.58
9309 14074 4.507710 TGCATACTCTCACTTTTAGCCTG 58.492 43.478 0.00 0.00 0.00 4.85
9310 14075 3.873952 GCATACTCTCACTTTTAGCCTGG 59.126 47.826 0.00 0.00 0.00 4.45
9311 14076 4.624125 GCATACTCTCACTTTTAGCCTGGT 60.624 45.833 0.00 0.00 0.00 4.00
9312 14077 3.686916 ACTCTCACTTTTAGCCTGGTC 57.313 47.619 0.00 0.00 0.00 4.02
9313 14078 2.303311 ACTCTCACTTTTAGCCTGGTCC 59.697 50.000 0.00 0.00 0.00 4.46
9314 14079 2.569404 CTCTCACTTTTAGCCTGGTCCT 59.431 50.000 0.00 0.00 0.00 3.85
9315 14080 2.979678 TCTCACTTTTAGCCTGGTCCTT 59.020 45.455 0.00 0.00 0.00 3.36
9316 14081 3.394606 TCTCACTTTTAGCCTGGTCCTTT 59.605 43.478 0.00 0.00 0.00 3.11
9317 14082 3.486383 TCACTTTTAGCCTGGTCCTTTG 58.514 45.455 0.00 0.00 0.00 2.77
9318 14083 3.137544 TCACTTTTAGCCTGGTCCTTTGA 59.862 43.478 0.00 0.00 0.00 2.69
9319 14084 4.082125 CACTTTTAGCCTGGTCCTTTGAT 58.918 43.478 0.00 0.00 0.00 2.57
9320 14085 5.013704 TCACTTTTAGCCTGGTCCTTTGATA 59.986 40.000 0.00 0.00 0.00 2.15
9321 14086 5.123979 CACTTTTAGCCTGGTCCTTTGATAC 59.876 44.000 0.00 0.00 0.00 2.24
9322 14087 3.536956 TTAGCCTGGTCCTTTGATACG 57.463 47.619 0.00 0.00 0.00 3.06
9323 14088 1.276622 AGCCTGGTCCTTTGATACGT 58.723 50.000 0.00 0.00 0.00 3.57
9324 14089 1.066143 AGCCTGGTCCTTTGATACGTG 60.066 52.381 0.00 0.00 0.00 4.49
9325 14090 2.012051 GCCTGGTCCTTTGATACGTGG 61.012 57.143 0.00 0.00 0.00 4.94
9326 14091 1.406887 CCTGGTCCTTTGATACGTGGG 60.407 57.143 0.00 0.00 0.00 4.61
9327 14092 1.553248 CTGGTCCTTTGATACGTGGGA 59.447 52.381 0.00 0.00 0.00 4.37
9328 14093 1.979308 TGGTCCTTTGATACGTGGGAA 59.021 47.619 0.00 0.00 0.00 3.97
9329 14094 2.574369 TGGTCCTTTGATACGTGGGAAT 59.426 45.455 0.00 0.00 0.00 3.01
9330 14095 3.009695 TGGTCCTTTGATACGTGGGAATT 59.990 43.478 0.00 0.00 0.00 2.17
9331 14096 4.225492 TGGTCCTTTGATACGTGGGAATTA 59.775 41.667 0.00 0.00 0.00 1.40
9332 14097 5.187687 GGTCCTTTGATACGTGGGAATTAA 58.812 41.667 0.00 0.00 0.00 1.40
9333 14098 5.648960 GGTCCTTTGATACGTGGGAATTAAA 59.351 40.000 0.00 0.00 0.00 1.52
9334 14099 6.151480 GGTCCTTTGATACGTGGGAATTAAAA 59.849 38.462 0.00 0.00 0.00 1.52
9335 14100 7.309316 GGTCCTTTGATACGTGGGAATTAAAAA 60.309 37.037 0.00 0.00 0.00 1.94
9357 14122 5.506730 AAAAACCCTGGAAAAACCTTCAA 57.493 34.783 0.00 0.00 39.86 2.69
9358 14123 4.753516 AAACCCTGGAAAAACCTTCAAG 57.246 40.909 0.00 0.00 39.86 3.02
9359 14124 3.680777 ACCCTGGAAAAACCTTCAAGA 57.319 42.857 0.00 0.00 39.86 3.02
9360 14125 3.989056 ACCCTGGAAAAACCTTCAAGAA 58.011 40.909 0.00 0.00 39.86 2.52
9361 14126 4.556697 ACCCTGGAAAAACCTTCAAGAAT 58.443 39.130 0.00 0.00 39.86 2.40
9362 14127 4.344968 ACCCTGGAAAAACCTTCAAGAATG 59.655 41.667 0.00 0.00 39.86 2.67
9363 14128 4.344968 CCCTGGAAAAACCTTCAAGAATGT 59.655 41.667 0.00 0.00 39.86 2.71
9364 14129 5.538433 CCCTGGAAAAACCTTCAAGAATGTA 59.462 40.000 0.00 0.00 39.86 2.29
9365 14130 6.211384 CCCTGGAAAAACCTTCAAGAATGTAT 59.789 38.462 0.00 0.00 39.86 2.29
9366 14131 7.315890 CCTGGAAAAACCTTCAAGAATGTATC 58.684 38.462 0.00 0.00 39.86 2.24
9367 14132 7.039784 CCTGGAAAAACCTTCAAGAATGTATCA 60.040 37.037 0.00 0.00 39.86 2.15
9368 14133 8.421249 TGGAAAAACCTTCAAGAATGTATCAT 57.579 30.769 0.00 0.00 39.86 2.45
9369 14134 8.869109 TGGAAAAACCTTCAAGAATGTATCATT 58.131 29.630 0.00 0.00 39.86 2.57
9370 14135 9.710900 GGAAAAACCTTCAAGAATGTATCATTT 57.289 29.630 0.00 0.00 35.41 2.32
9375 14140 9.696917 AACCTTCAAGAATGTATCATTTTCAAC 57.303 29.630 0.00 0.00 0.00 3.18
9376 14141 8.859090 ACCTTCAAGAATGTATCATTTTCAACA 58.141 29.630 0.00 0.00 0.00 3.33
9377 14142 9.865321 CCTTCAAGAATGTATCATTTTCAACAT 57.135 29.630 0.00 0.00 34.11 2.71
9395 14255 7.018487 TCAACATCAAATTCCCATCCAAAAT 57.982 32.000 0.00 0.00 0.00 1.82
9396 14256 7.104939 TCAACATCAAATTCCCATCCAAAATC 58.895 34.615 0.00 0.00 0.00 2.17
9408 14268 2.358957 TCCAAAATCTGTCTCCATGCG 58.641 47.619 0.00 0.00 0.00 4.73
9414 14274 5.741388 AAATCTGTCTCCATGCGAAATAC 57.259 39.130 0.00 0.00 0.00 1.89
9443 14303 2.535984 GTGCACACGCTAGCTAACTATG 59.464 50.000 13.17 3.76 39.64 2.23
9492 14352 4.158764 TGGAAACTACACAAAAGTGTTGGG 59.841 41.667 6.57 0.00 38.64 4.12
9501 14361 7.272037 ACACAAAAGTGTTGGGAGTTAATAG 57.728 36.000 1.16 0.00 35.07 1.73
9608 14468 4.997395 ACAGTTCAGTTAATCTTCGCATGT 59.003 37.500 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.074850 GAGAGGGGAGGGAGGAAGG 60.075 68.421 0.00 0.00 0.00 3.46
6 7 0.398381 CAGAGAGGGGAGGGAGGAAG 60.398 65.000 0.00 0.00 0.00 3.46
7 8 1.706575 CAGAGAGGGGAGGGAGGAA 59.293 63.158 0.00 0.00 0.00 3.36
8 9 3.015332 GCAGAGAGGGGAGGGAGGA 62.015 68.421 0.00 0.00 0.00 3.71
9 10 2.445654 GCAGAGAGGGGAGGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
10 11 1.761667 CAGCAGAGAGGGGAGGGAG 60.762 68.421 0.00 0.00 0.00 4.30
11 12 2.366167 CAGCAGAGAGGGGAGGGA 59.634 66.667 0.00 0.00 0.00 4.20
12 13 2.040278 ACAGCAGAGAGGGGAGGG 59.960 66.667 0.00 0.00 0.00 4.30
13 14 3.028921 GCACAGCAGAGAGGGGAGG 62.029 68.421 0.00 0.00 0.00 4.30
14 15 2.583520 GCACAGCAGAGAGGGGAG 59.416 66.667 0.00 0.00 0.00 4.30
15 16 3.005539 GGCACAGCAGAGAGGGGA 61.006 66.667 0.00 0.00 0.00 4.81
16 17 4.106925 GGGCACAGCAGAGAGGGG 62.107 72.222 0.00 0.00 0.00 4.79
17 18 4.463879 CGGGCACAGCAGAGAGGG 62.464 72.222 0.00 0.00 0.00 4.30
39 40 4.873129 CCGATCCGGCCACACGAG 62.873 72.222 2.24 0.00 41.17 4.18
42 43 4.832608 GTCCCGATCCGGCCACAC 62.833 72.222 2.24 0.00 46.86 3.82
70 71 4.415332 CCAGCCAGCAAGCAAGCG 62.415 66.667 0.55 0.00 40.15 4.68
71 72 4.736896 GCCAGCCAGCAAGCAAGC 62.737 66.667 0.55 0.00 34.23 4.01
72 73 4.415332 CGCCAGCCAGCAAGCAAG 62.415 66.667 0.55 0.00 34.23 4.01
122 123 4.671569 GCAGATCTAGGCCCGCGG 62.672 72.222 21.04 21.04 0.00 6.46
124 125 4.671569 CCGCAGATCTAGGCCCGC 62.672 72.222 0.00 0.00 0.00 6.13
125 126 3.996124 CCCGCAGATCTAGGCCCG 61.996 72.222 0.00 0.00 0.00 6.13
126 127 1.893919 GATCCCGCAGATCTAGGCCC 61.894 65.000 0.00 0.00 46.85 5.80
127 128 1.594310 GATCCCGCAGATCTAGGCC 59.406 63.158 10.15 0.00 46.85 5.19
246 247 4.427394 GCACAGAGCATCCCGTAG 57.573 61.111 0.00 0.00 44.79 3.51
256 257 1.079543 CGTGGGGAAGAGCACAGAG 60.080 63.158 0.00 0.00 0.00 3.35
258 259 0.108615 CTACGTGGGGAAGAGCACAG 60.109 60.000 0.00 0.00 0.00 3.66
263 264 0.386113 GCTAGCTACGTGGGGAAGAG 59.614 60.000 7.70 0.00 0.00 2.85
272 273 4.913126 GCACAAGGCTAGCTACGT 57.087 55.556 15.72 6.16 40.25 3.57
306 315 1.033746 TAGACGAACGGGGCAGTAGG 61.034 60.000 0.00 0.00 0.00 3.18
307 316 0.100146 GTAGACGAACGGGGCAGTAG 59.900 60.000 0.00 0.00 0.00 2.57
308 317 0.322816 AGTAGACGAACGGGGCAGTA 60.323 55.000 0.00 0.00 0.00 2.74
310 319 0.736325 CAAGTAGACGAACGGGGCAG 60.736 60.000 0.00 0.00 0.00 4.85
311 320 1.290955 CAAGTAGACGAACGGGGCA 59.709 57.895 0.00 0.00 0.00 5.36
315 377 1.978542 CAGACCAAGTAGACGAACGG 58.021 55.000 0.00 0.00 0.00 4.44
350 416 3.558321 CCCCAGATTGTTCCTTGTAACGA 60.558 47.826 0.00 0.00 31.76 3.85
357 423 2.041755 GGAGAACCCCAGATTGTTCCTT 59.958 50.000 0.00 0.00 41.36 3.36
393 459 6.243216 GGGAACCGGCCATTCTTATATATA 57.757 41.667 14.69 0.00 40.86 0.86
395 461 4.563140 GGGAACCGGCCATTCTTATATA 57.437 45.455 14.69 0.00 40.86 0.86
398 464 3.821306 GGGAACCGGCCATTCTTAT 57.179 52.632 14.69 0.00 40.86 1.73
411 477 3.421844 ACAAGCAAATCAGGTAGGGAAC 58.578 45.455 0.00 0.00 0.00 3.62
412 478 3.806949 ACAAGCAAATCAGGTAGGGAA 57.193 42.857 0.00 0.00 0.00 3.97
413 479 3.806949 AACAAGCAAATCAGGTAGGGA 57.193 42.857 0.00 0.00 0.00 4.20
415 481 3.256631 AGCAAACAAGCAAATCAGGTAGG 59.743 43.478 0.00 0.00 36.85 3.18
416 482 4.479619 GAGCAAACAAGCAAATCAGGTAG 58.520 43.478 0.00 0.00 36.85 3.18
417 483 3.058293 CGAGCAAACAAGCAAATCAGGTA 60.058 43.478 0.00 0.00 36.85 3.08
418 484 2.287788 CGAGCAAACAAGCAAATCAGGT 60.288 45.455 0.00 0.00 36.85 4.00
419 485 2.287788 ACGAGCAAACAAGCAAATCAGG 60.288 45.455 0.00 0.00 36.85 3.86
430 496 0.101579 TCAGACACGACGAGCAAACA 59.898 50.000 0.00 0.00 0.00 2.83
434 500 1.282875 CACTCAGACACGACGAGCA 59.717 57.895 0.00 0.00 0.00 4.26
438 504 1.979469 GATGAACACTCAGACACGACG 59.021 52.381 0.00 0.00 34.23 5.12
439 505 1.979469 CGATGAACACTCAGACACGAC 59.021 52.381 0.00 0.00 34.23 4.34
440 506 1.607148 ACGATGAACACTCAGACACGA 59.393 47.619 0.00 0.00 34.23 4.35
443 509 2.135139 GCAACGATGAACACTCAGACA 58.865 47.619 0.00 0.00 34.23 3.41
447 513 1.225855 GTGGCAACGATGAACACTCA 58.774 50.000 11.74 0.00 42.51 3.41
448 514 1.225855 TGTGGCAACGATGAACACTC 58.774 50.000 17.22 0.00 37.08 3.51
449 515 1.896220 ATGTGGCAACGATGAACACT 58.104 45.000 17.22 5.39 37.08 3.55
450 516 4.355543 AATATGTGGCAACGATGAACAC 57.644 40.909 12.00 12.00 42.51 3.32
451 517 5.384063 AAAATATGTGGCAACGATGAACA 57.616 34.783 0.00 0.26 42.51 3.18
454 520 5.159925 CACAAAAATATGTGGCAACGATGA 58.840 37.500 0.00 0.00 45.47 2.92
455 521 5.438821 CACAAAAATATGTGGCAACGATG 57.561 39.130 0.00 0.00 45.47 3.84
465 531 5.789643 ACTGCTGTTCCACAAAAATATGT 57.210 34.783 0.00 0.00 0.00 2.29
470 536 4.202010 GCTTCTACTGCTGTTCCACAAAAA 60.202 41.667 0.09 0.00 0.00 1.94
480 546 5.878406 ATAGTATTGGCTTCTACTGCTGT 57.122 39.130 0.66 0.66 30.98 4.40
497 563 7.942894 TCGTCTCCAATCCTAGATGAAATAGTA 59.057 37.037 0.00 0.00 35.38 1.82
498 564 6.778069 TCGTCTCCAATCCTAGATGAAATAGT 59.222 38.462 0.00 0.00 35.38 2.12
502 568 4.956700 ACTCGTCTCCAATCCTAGATGAAA 59.043 41.667 0.00 0.00 37.32 2.69
533 599 1.604604 ACACGGCTGCAAACAGTAAT 58.395 45.000 0.50 0.00 46.30 1.89
547 613 0.998226 CAGAACAATGCGCAACACGG 60.998 55.000 17.11 4.77 43.93 4.94
556 622 2.923605 GCACCATGTGACAGAACAATGC 60.924 50.000 0.00 0.00 35.23 3.56
615 683 1.053424 AAGGCAAGACCGACCTTACA 58.947 50.000 0.00 0.00 46.52 2.41
622 690 0.539438 ATTTGGCAAGGCAAGACCGA 60.539 50.000 9.05 0.00 46.52 4.69
624 692 0.037046 CCATTTGGCAAGGCAAGACC 60.037 55.000 9.05 0.00 39.61 3.85
643 711 0.108019 AAGGGAAACTGTGGTCGACC 59.892 55.000 28.17 28.17 0.00 4.79
666 734 2.962421 AGCAGATAGAGAGGGCACTAAC 59.038 50.000 0.00 0.00 0.00 2.34
671 739 5.636903 AATAAAAGCAGATAGAGAGGGCA 57.363 39.130 0.00 0.00 0.00 5.36
692 760 8.298854 CACATTTCAACAACCAGATTGAGATAA 58.701 33.333 0.00 0.00 41.23 1.75
702 770 4.339247 AGAGGTTCACATTTCAACAACCAG 59.661 41.667 0.00 0.00 39.26 4.00
703 771 4.097741 CAGAGGTTCACATTTCAACAACCA 59.902 41.667 0.00 0.00 39.26 3.67
716 784 2.079925 GCATCCAAGACAGAGGTTCAC 58.920 52.381 0.00 0.00 0.00 3.18
717 785 1.980765 AGCATCCAAGACAGAGGTTCA 59.019 47.619 0.00 0.00 0.00 3.18
757 825 7.177568 ACGTCTGGAGATCATTATGCTTACTAT 59.822 37.037 0.00 0.00 0.00 2.12
769 837 4.406648 TGCAATTACGTCTGGAGATCAT 57.593 40.909 0.00 0.00 0.00 2.45
876 947 6.663093 TGCATAGATCCCAAACACAAATAGTT 59.337 34.615 0.00 0.00 0.00 2.24
902 973 6.349280 GCAGAGGCAAATATAAAACACACAGA 60.349 38.462 0.00 0.00 40.72 3.41
925 996 8.458573 TGATAAGAAACTTGGAACTAAAAGCA 57.541 30.769 0.00 0.00 0.00 3.91
1025 1096 1.006281 TGGCGGAAGTCCTAAGAGGTA 59.994 52.381 0.00 0.00 36.53 3.08
1194 1266 9.712305 TTCTAAACTCAGAAAGAACCTTATCAG 57.288 33.333 0.00 0.00 31.63 2.90
1212 1284 6.462909 CCAAGTTTGCCTCCATTTTCTAAACT 60.463 38.462 0.00 0.00 38.20 2.66
1671 1743 6.973229 GCAGATTGCAAGGAAAATACAATT 57.027 33.333 4.94 0.00 44.26 2.32
1828 1900 3.430790 GGCAAAAACTTGAACAAGCTCCT 60.431 43.478 13.50 0.00 41.99 3.69
1897 1969 9.618890 ATGAAGTCAGCTAAGAATTATAAGCAA 57.381 29.630 7.80 0.00 37.44 3.91
1929 2001 8.103305 AGTAACATCTATGGTGCCCATATAAAG 58.897 37.037 12.60 5.32 44.33 1.85
1946 2018 6.238759 GCAAGTCAAAGTCCAAAGTAACATCT 60.239 38.462 0.00 0.00 0.00 2.90
1962 2034 5.392272 CGATTCATGGAAGATGCAAGTCAAA 60.392 40.000 0.00 0.00 0.00 2.69
2002 2074 7.436376 TCAAGAGATAGACATTACGCAAGAATG 59.564 37.037 1.71 1.71 43.62 2.67
2003 2075 7.492524 TCAAGAGATAGACATTACGCAAGAAT 58.507 34.615 0.00 0.00 43.62 2.40
2291 2372 6.496565 ACCACTTCCATAACCATTTGAATGAA 59.503 34.615 5.32 0.00 38.70 2.57
2292 2373 6.015918 ACCACTTCCATAACCATTTGAATGA 58.984 36.000 5.32 0.00 38.70 2.57
2293 2374 6.284891 ACCACTTCCATAACCATTTGAATG 57.715 37.500 0.00 0.00 36.17 2.67
2294 2375 8.608185 ATTACCACTTCCATAACCATTTGAAT 57.392 30.769 0.00 0.00 0.00 2.57
2480 2566 6.863645 AGCAATATACTGACATATCACGTGAC 59.136 38.462 22.71 8.37 0.00 3.67
2488 2574 6.072286 GCAGGCAAAGCAATATACTGACATAT 60.072 38.462 0.00 0.00 0.00 1.78
2593 2679 3.118905 TGATGTGATCACGGTTGACAA 57.881 42.857 20.54 0.96 33.38 3.18
3196 3440 2.642139 TTCCTGCGTAAGTAACCTCG 57.358 50.000 0.00 0.00 41.68 4.63
3208 3452 4.332819 CCAAGTATAAACCTCTTTCCTGCG 59.667 45.833 0.00 0.00 0.00 5.18
3384 3628 5.450376 ACAGCATATGTAACTTCGTTTCG 57.550 39.130 4.29 0.00 41.60 3.46
3445 3689 1.342174 GTGAACGGAGGGAGTAACACA 59.658 52.381 0.00 0.00 33.05 3.72
3446 3690 1.342174 TGTGAACGGAGGGAGTAACAC 59.658 52.381 0.00 0.00 33.25 3.32
3506 3751 9.730420 GTGAACAAACAACTAAAATGTGTCTAT 57.270 29.630 0.00 0.00 0.00 1.98
3507 3752 8.952278 AGTGAACAAACAACTAAAATGTGTCTA 58.048 29.630 0.00 0.00 0.00 2.59
3523 3768 4.035208 ACGGACTGAAATGAGTGAACAAAC 59.965 41.667 0.00 0.00 0.00 2.93
3524 3769 4.196193 ACGGACTGAAATGAGTGAACAAA 58.804 39.130 0.00 0.00 0.00 2.83
3572 3818 6.542370 CCCTCCGTTGACAAATATAGATGTTT 59.458 38.462 0.00 0.00 0.00 2.83
3580 3826 6.055588 CACTATTCCCTCCGTTGACAAATAT 58.944 40.000 0.00 0.00 0.00 1.28
3581 3827 5.188163 TCACTATTCCCTCCGTTGACAAATA 59.812 40.000 0.00 0.00 0.00 1.40
3582 3828 4.019681 TCACTATTCCCTCCGTTGACAAAT 60.020 41.667 0.00 0.00 0.00 2.32
3583 3829 3.325425 TCACTATTCCCTCCGTTGACAAA 59.675 43.478 0.00 0.00 0.00 2.83
3586 3832 3.604875 TTCACTATTCCCTCCGTTGAC 57.395 47.619 0.00 0.00 0.00 3.18
3587 3833 4.627284 TTTTCACTATTCCCTCCGTTGA 57.373 40.909 0.00 0.00 0.00 3.18
3588 3834 5.527582 CCTATTTTCACTATTCCCTCCGTTG 59.472 44.000 0.00 0.00 0.00 4.10
3589 3835 5.427481 TCCTATTTTCACTATTCCCTCCGTT 59.573 40.000 0.00 0.00 0.00 4.44
3591 3837 5.546621 TCCTATTTTCACTATTCCCTCCG 57.453 43.478 0.00 0.00 0.00 4.63
3592 3838 8.589701 TTTTTCCTATTTTCACTATTCCCTCC 57.410 34.615 0.00 0.00 0.00 4.30
3594 3840 9.997172 ATCTTTTTCCTATTTTCACTATTCCCT 57.003 29.630 0.00 0.00 0.00 4.20
3619 3865 3.516300 TGTAAGACCACCGTCCACATTAT 59.484 43.478 0.00 0.00 40.12 1.28
3630 3876 3.758554 ACTCATGCAAATGTAAGACCACC 59.241 43.478 0.00 0.00 0.00 4.61
3696 3942 7.603180 AGTATGTCTATTTAGAGATGGCACA 57.397 36.000 7.34 0.00 37.00 4.57
3697 3943 8.768955 CAAAGTATGTCTATTTAGAGATGGCAC 58.231 37.037 7.34 0.00 37.00 5.01
3733 3979 6.757010 CCATCATAAGTAGTGTGGTTGAGTAC 59.243 42.308 0.00 0.00 0.00 2.73
3742 3988 7.447374 TTTTGTTCCCATCATAAGTAGTGTG 57.553 36.000 0.00 0.00 0.00 3.82
3765 4011 5.537300 AGTGTAGTTGAGTGAGTGACATT 57.463 39.130 0.00 0.00 0.00 2.71
3807 4053 4.934797 AATCCTTGGACCTGAGAATTGA 57.065 40.909 0.00 0.00 0.00 2.57
4347 4713 5.331902 CAAAAGATATTGTACCTGTTGGCG 58.668 41.667 0.00 0.00 36.63 5.69
4375 4741 2.224744 TGAGGATTGCTAACTTGCCACA 60.225 45.455 0.00 0.00 0.00 4.17
4422 4788 4.831710 TGTGACCATGATGAATCAACCAAA 59.168 37.500 0.00 0.00 40.69 3.28
4466 4840 9.710818 AGACAGTATTACTTAGGGATCAAGTAA 57.289 33.333 15.38 15.38 46.78 2.24
4467 4841 9.352191 GAGACAGTATTACTTAGGGATCAAGTA 57.648 37.037 0.00 0.00 37.42 2.24
4468 4842 7.288158 GGAGACAGTATTACTTAGGGATCAAGT 59.712 40.741 0.00 0.00 39.50 3.16
4469 4843 7.287927 TGGAGACAGTATTACTTAGGGATCAAG 59.712 40.741 0.00 0.00 35.01 3.02
4510 4884 5.624159 TGAGCATATGGGATTGGTTAAGAG 58.376 41.667 4.56 0.00 0.00 2.85
4531 4905 1.618837 GAGTGTGAGGCCAGTAGTTGA 59.381 52.381 5.01 0.00 0.00 3.18
4641 5015 9.499479 AGTTTGGCTAGATTTCAGTATATGATG 57.501 33.333 0.00 0.00 37.89 3.07
4687 5061 1.902938 TTCGATGTGCCACCAAATCA 58.097 45.000 0.00 0.00 35.76 2.57
4908 5282 5.745227 TCCTAAACCAGCTTATTCCAAGAG 58.255 41.667 0.00 0.00 0.00 2.85
5220 5606 8.812329 TGTCAAAAACAATAAAAATGGAACTCG 58.188 29.630 0.00 0.00 34.03 4.18
5387 5785 4.116113 ACCATCCAACCTAGGGTTCATAA 58.884 43.478 14.81 0.00 43.05 1.90
5417 5815 8.812972 TGTCTTTGTCACCACTACTATCTTTAT 58.187 33.333 0.00 0.00 0.00 1.40
5430 5828 3.136443 AGATCCTGTTGTCTTTGTCACCA 59.864 43.478 0.00 0.00 0.00 4.17
5618 6016 1.709147 CCTTCAGAAATCAGCGGCCG 61.709 60.000 24.05 24.05 0.00 6.13
5653 6051 8.802267 TGAATTTATTAAACTTCCAAGTCAGGG 58.198 33.333 0.00 0.00 38.57 4.45
5786 6186 3.209410 GGCCCATTCAACTACATCTCAG 58.791 50.000 0.00 0.00 0.00 3.35
5830 6230 4.036262 GCTGGTTGATACAACACAACAGAA 59.964 41.667 14.89 0.00 45.27 3.02
5847 6248 3.319405 CAGGACACTATCTATCGCTGGTT 59.681 47.826 0.00 0.00 0.00 3.67
5917 6323 8.989980 GCTAGTACAAAGTTGAGTCACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
5921 6327 6.163135 AGCTAGTACAAAGTTGAGTCACTT 57.837 37.500 0.00 0.00 38.74 3.16
5941 6347 9.828039 AGTTTGTACTAACTTTGTACTAAAGCT 57.172 29.630 15.68 7.77 40.44 3.74
5947 6490 9.310716 GACTCAAGTTTGTACTAACTTTGTACT 57.689 33.333 26.14 11.72 43.85 2.73
5949 6492 9.090692 GTGACTCAAGTTTGTACTAACTTTGTA 57.909 33.333 26.14 16.32 43.85 2.41
5958 6501 9.391006 TCAAAATAAGTGACTCAAGTTTGTACT 57.609 29.630 15.56 0.00 35.68 2.73
5961 6504 8.398665 GTCTCAAAATAAGTGACTCAAGTTTGT 58.601 33.333 15.56 0.00 0.00 2.83
5962 6505 7.584123 CGTCTCAAAATAAGTGACTCAAGTTTG 59.416 37.037 11.98 11.98 0.00 2.93
5965 6508 5.696724 CCGTCTCAAAATAAGTGACTCAAGT 59.303 40.000 0.00 0.00 0.00 3.16
5966 6509 5.926542 TCCGTCTCAAAATAAGTGACTCAAG 59.073 40.000 0.00 0.00 0.00 3.02
5972 6515 3.835978 TCCCTCCGTCTCAAAATAAGTGA 59.164 43.478 0.00 0.00 0.00 3.41
5973 6516 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
5975 6518 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
5978 6521 3.775316 ACATACTCCCTCCGTCTCAAAAT 59.225 43.478 0.00 0.00 0.00 1.82
5979 6522 3.170717 ACATACTCCCTCCGTCTCAAAA 58.829 45.455 0.00 0.00 0.00 2.44
5981 6524 2.526888 ACATACTCCCTCCGTCTCAA 57.473 50.000 0.00 0.00 0.00 3.02
5982 6525 3.285484 GTTACATACTCCCTCCGTCTCA 58.715 50.000 0.00 0.00 0.00 3.27
5983 6526 3.285484 TGTTACATACTCCCTCCGTCTC 58.715 50.000 0.00 0.00 0.00 3.36
5984 6527 3.377253 TGTTACATACTCCCTCCGTCT 57.623 47.619 0.00 0.00 0.00 4.18
5988 6579 5.758784 GCATTACTTGTTACATACTCCCTCC 59.241 44.000 0.00 0.00 0.00 4.30
6055 6646 3.062763 CAGCTGCCAGAAGTATAATCCG 58.937 50.000 0.00 0.00 0.00 4.18
6204 6818 7.023197 AGGGTTGTAATTTGTATTATGTCGC 57.977 36.000 0.00 0.00 0.00 5.19
6216 6830 7.038587 GGTAAAGGGAATCAAGGGTTGTAATTT 60.039 37.037 0.00 0.00 0.00 1.82
6330 6951 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
6365 6986 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
6673 7294 2.166870 ACACGCTCGGATGTTAATGGTA 59.833 45.455 0.00 0.00 0.00 3.25
6720 7341 2.431601 ACTCGCAGCTGAGTTCGC 60.432 61.111 20.43 0.00 46.85 4.70
6721 7342 2.724708 GCACTCGCAGCTGAGTTCG 61.725 63.158 20.43 11.76 46.85 3.95
6722 7343 1.373999 AGCACTCGCAGCTGAGTTC 60.374 57.895 20.43 7.53 46.85 3.01
6723 7344 2.739784 AGCACTCGCAGCTGAGTT 59.260 55.556 20.43 2.92 46.85 3.01
7184 7834 7.363617 GTGATATAGACCATCAGATCAGCATGA 60.364 40.741 0.00 0.00 40.55 3.07
7367 8018 4.202377 TGGGACAAGTAATTTCAGACGGAA 60.202 41.667 0.00 0.00 31.92 4.30
7455 8106 0.819582 TCACTCCGTCCCGAATTACC 59.180 55.000 0.00 0.00 0.00 2.85
7724 8377 4.714632 AGACCTTGAAAAATCGTGAAGGA 58.285 39.130 0.00 0.00 37.27 3.36
7732 8385 8.593492 ACTGCATTTTAAGACCTTGAAAAATC 57.407 30.769 4.25 0.00 32.95 2.17
7983 9980 5.711976 ACAGGCATAGTTAGCACAAGAAATT 59.288 36.000 0.00 0.00 0.00 1.82
7984 9981 5.256474 ACAGGCATAGTTAGCACAAGAAAT 58.744 37.500 0.00 0.00 0.00 2.17
8371 10554 1.098050 AATTCAGCGTCCAGGCATTC 58.902 50.000 0.00 0.00 34.64 2.67
8538 10723 3.193267 TCAAAAGAGGCATGTATGTTGGC 59.807 43.478 0.00 0.00 39.77 4.52
8539 10724 5.389859 TTCAAAAGAGGCATGTATGTTGG 57.610 39.130 0.00 0.00 0.00 3.77
8540 10725 7.092079 TCATTTCAAAAGAGGCATGTATGTTG 58.908 34.615 0.00 0.00 0.00 3.33
8541 10726 7.230849 TCATTTCAAAAGAGGCATGTATGTT 57.769 32.000 0.00 0.00 0.00 2.71
8542 10727 6.839124 TCATTTCAAAAGAGGCATGTATGT 57.161 33.333 0.00 0.00 0.00 2.29
8543 10728 8.600625 CATTTCATTTCAAAAGAGGCATGTATG 58.399 33.333 0.00 0.00 0.00 2.39
8544 10729 8.316214 ACATTTCATTTCAAAAGAGGCATGTAT 58.684 29.630 0.00 0.00 0.00 2.29
8545 10730 7.669427 ACATTTCATTTCAAAAGAGGCATGTA 58.331 30.769 0.00 0.00 0.00 2.29
8546 10731 6.527423 ACATTTCATTTCAAAAGAGGCATGT 58.473 32.000 0.00 0.00 0.00 3.21
8547 10732 7.429636 AACATTTCATTTCAAAAGAGGCATG 57.570 32.000 0.00 0.00 0.00 4.06
8548 10733 7.499895 ACAAACATTTCATTTCAAAAGAGGCAT 59.500 29.630 0.00 0.00 0.00 4.40
8549 10734 6.822676 ACAAACATTTCATTTCAAAAGAGGCA 59.177 30.769 0.00 0.00 0.00 4.75
8570 10767 1.136828 ACAGAGCTGGGGTGTACAAA 58.863 50.000 0.00 0.00 34.19 2.83
8939 11322 2.016318 CACGAAATAGATGGCCTTGCA 58.984 47.619 3.32 0.00 0.00 4.08
8984 11367 0.400815 AAGGACCCACCCACACACTA 60.401 55.000 0.00 0.00 40.05 2.74
9041 11426 7.273381 CCCAAACAAGTCTTAAATAAATCAGCG 59.727 37.037 0.00 0.00 0.00 5.18
9114 11536 5.632764 CCAATTCACGCAACATTTCACATAA 59.367 36.000 0.00 0.00 0.00 1.90
9146 11568 5.297776 CCAAATATGACTGATCCACACTTCC 59.702 44.000 0.00 0.00 0.00 3.46
9152 11574 4.260784 GCGTTCCAAATATGACTGATCCAC 60.261 45.833 0.00 0.00 0.00 4.02
9153 11575 3.876914 GCGTTCCAAATATGACTGATCCA 59.123 43.478 0.00 0.00 0.00 3.41
9154 11576 3.251004 GGCGTTCCAAATATGACTGATCC 59.749 47.826 0.00 0.00 0.00 3.36
9202 11627 2.048503 CCAACCTGTCGACCGGAC 60.049 66.667 29.93 0.00 46.27 4.79
9210 11635 0.250901 AGCCATGACACCAACCTGTC 60.251 55.000 0.00 0.00 40.98 3.51
9212 11637 2.198827 TAAGCCATGACACCAACCTG 57.801 50.000 0.00 0.00 0.00 4.00
9213 11638 2.308570 TGATAAGCCATGACACCAACCT 59.691 45.455 0.00 0.00 0.00 3.50
9214 11639 2.423538 GTGATAAGCCATGACACCAACC 59.576 50.000 0.00 0.00 0.00 3.77
9215 11640 3.347216 AGTGATAAGCCATGACACCAAC 58.653 45.455 0.00 0.00 32.76 3.77
9216 11641 3.719268 AGTGATAAGCCATGACACCAA 57.281 42.857 0.00 0.00 32.76 3.67
9217 11642 3.432186 GCTAGTGATAAGCCATGACACCA 60.432 47.826 0.00 0.00 33.73 4.17
9220 11645 3.737972 CGTGCTAGTGATAAGCCATGACA 60.738 47.826 0.00 0.00 39.30 3.58
9221 11646 2.797156 CGTGCTAGTGATAAGCCATGAC 59.203 50.000 0.00 0.00 39.30 3.06
9224 11649 3.306364 GGATCGTGCTAGTGATAAGCCAT 60.306 47.826 0.00 0.00 39.30 4.40
9226 11651 2.678324 GGATCGTGCTAGTGATAAGCC 58.322 52.381 0.00 0.00 39.30 4.35
9227 11652 2.320367 CGGATCGTGCTAGTGATAAGC 58.680 52.381 0.00 0.00 40.50 3.09
9228 11653 2.922758 GCCGGATCGTGCTAGTGATAAG 60.923 54.545 5.05 0.00 0.00 1.73
9229 11654 1.000607 GCCGGATCGTGCTAGTGATAA 60.001 52.381 5.05 0.00 0.00 1.75
9230 11655 0.596577 GCCGGATCGTGCTAGTGATA 59.403 55.000 5.05 0.00 0.00 2.15
9231 11656 1.364171 GCCGGATCGTGCTAGTGAT 59.636 57.895 5.05 0.00 0.00 3.06
9232 11657 2.049767 TGCCGGATCGTGCTAGTGA 61.050 57.895 5.05 0.00 0.00 3.41
9234 11659 2.494918 GTGCCGGATCGTGCTAGT 59.505 61.111 5.05 0.00 0.00 2.57
9239 11664 4.175337 ATGGGGTGCCGGATCGTG 62.175 66.667 5.05 0.00 0.00 4.35
9240 11665 4.175337 CATGGGGTGCCGGATCGT 62.175 66.667 5.05 0.00 0.00 3.73
9249 11674 0.963962 GCTGGATAATGCATGGGGTG 59.036 55.000 0.00 0.00 0.00 4.61
9250 11675 0.538057 CGCTGGATAATGCATGGGGT 60.538 55.000 0.00 0.00 0.00 4.95
9251 11676 1.870055 GCGCTGGATAATGCATGGGG 61.870 60.000 0.00 0.00 0.00 4.96
9252 11677 1.582968 GCGCTGGATAATGCATGGG 59.417 57.895 0.00 0.00 0.00 4.00
9253 11678 1.208358 CGCGCTGGATAATGCATGG 59.792 57.895 5.56 0.00 0.00 3.66
9254 11679 1.208358 CCGCGCTGGATAATGCATG 59.792 57.895 12.11 0.00 42.00 4.06
9255 11680 2.620112 GCCGCGCTGGATAATGCAT 61.620 57.895 20.06 0.00 42.00 3.96
9257 11682 3.279116 TGCCGCGCTGGATAATGC 61.279 61.111 20.06 0.00 42.00 3.56
9258 11683 2.179547 TGTGCCGCGCTGGATAATG 61.180 57.895 20.06 0.00 42.00 1.90
9262 11687 4.783621 ATGTGTGCCGCGCTGGAT 62.784 61.111 20.06 3.58 42.00 3.41
9300 14065 4.258543 CGTATCAAAGGACCAGGCTAAAA 58.741 43.478 0.00 0.00 0.00 1.52
9301 14066 3.262405 ACGTATCAAAGGACCAGGCTAAA 59.738 43.478 0.00 0.00 0.00 1.85
9302 14067 2.835764 ACGTATCAAAGGACCAGGCTAA 59.164 45.455 0.00 0.00 0.00 3.09
9303 14068 2.167693 CACGTATCAAAGGACCAGGCTA 59.832 50.000 0.00 0.00 0.00 3.93
9304 14069 1.066143 CACGTATCAAAGGACCAGGCT 60.066 52.381 0.00 0.00 0.00 4.58
9305 14070 1.369625 CACGTATCAAAGGACCAGGC 58.630 55.000 0.00 0.00 0.00 4.85
9306 14071 1.406887 CCCACGTATCAAAGGACCAGG 60.407 57.143 0.00 0.00 0.00 4.45
9307 14072 1.553248 TCCCACGTATCAAAGGACCAG 59.447 52.381 0.00 0.00 0.00 4.00
9308 14073 1.646912 TCCCACGTATCAAAGGACCA 58.353 50.000 0.00 0.00 0.00 4.02
9309 14074 2.773993 TTCCCACGTATCAAAGGACC 57.226 50.000 0.00 0.00 0.00 4.46
9310 14075 6.746745 TTTAATTCCCACGTATCAAAGGAC 57.253 37.500 0.00 0.00 0.00 3.85
9311 14076 7.762588 TTTTTAATTCCCACGTATCAAAGGA 57.237 32.000 0.00 0.00 0.00 3.36
9335 14100 5.249622 TCTTGAAGGTTTTTCCAGGGTTTTT 59.750 36.000 0.00 0.00 39.02 1.94
9336 14101 4.780554 TCTTGAAGGTTTTTCCAGGGTTTT 59.219 37.500 0.00 0.00 39.02 2.43
9337 14102 4.358214 TCTTGAAGGTTTTTCCAGGGTTT 58.642 39.130 0.00 0.00 39.02 3.27
9338 14103 3.989056 TCTTGAAGGTTTTTCCAGGGTT 58.011 40.909 0.00 0.00 39.02 4.11
9339 14104 3.680777 TCTTGAAGGTTTTTCCAGGGT 57.319 42.857 0.00 0.00 39.02 4.34
9340 14105 4.344968 ACATTCTTGAAGGTTTTTCCAGGG 59.655 41.667 0.00 0.00 39.02 4.45
9341 14106 5.535753 ACATTCTTGAAGGTTTTTCCAGG 57.464 39.130 0.00 0.00 39.02 4.45
9342 14107 7.885297 TGATACATTCTTGAAGGTTTTTCCAG 58.115 34.615 5.99 0.00 39.02 3.86
9343 14108 7.831691 TGATACATTCTTGAAGGTTTTTCCA 57.168 32.000 5.99 0.00 39.02 3.53
9344 14109 9.710900 AAATGATACATTCTTGAAGGTTTTTCC 57.289 29.630 5.99 0.00 0.00 3.13
9349 14114 9.696917 GTTGAAAATGATACATTCTTGAAGGTT 57.303 29.630 5.99 0.00 0.00 3.50
9350 14115 8.859090 TGTTGAAAATGATACATTCTTGAAGGT 58.141 29.630 5.97 5.97 0.00 3.50
9351 14116 9.865321 ATGTTGAAAATGATACATTCTTGAAGG 57.135 29.630 0.00 0.00 0.00 3.46
9360 14125 9.603921 GGGAATTTGATGTTGAAAATGATACAT 57.396 29.630 0.00 0.00 34.14 2.29
9361 14126 8.591940 TGGGAATTTGATGTTGAAAATGATACA 58.408 29.630 0.00 0.00 0.00 2.29
9362 14127 9.603921 ATGGGAATTTGATGTTGAAAATGATAC 57.396 29.630 0.00 0.00 0.00 2.24
9363 14128 9.820725 GATGGGAATTTGATGTTGAAAATGATA 57.179 29.630 0.00 0.00 0.00 2.15
9364 14129 7.771826 GGATGGGAATTTGATGTTGAAAATGAT 59.228 33.333 0.00 0.00 0.00 2.45
9365 14130 7.104939 GGATGGGAATTTGATGTTGAAAATGA 58.895 34.615 0.00 0.00 0.00 2.57
9366 14131 6.879993 TGGATGGGAATTTGATGTTGAAAATG 59.120 34.615 0.00 0.00 0.00 2.32
9367 14132 7.018487 TGGATGGGAATTTGATGTTGAAAAT 57.982 32.000 0.00 0.00 0.00 1.82
9368 14133 6.430962 TGGATGGGAATTTGATGTTGAAAA 57.569 33.333 0.00 0.00 0.00 2.29
9369 14134 6.430962 TTGGATGGGAATTTGATGTTGAAA 57.569 33.333 0.00 0.00 0.00 2.69
9370 14135 6.430962 TTTGGATGGGAATTTGATGTTGAA 57.569 33.333 0.00 0.00 0.00 2.69
9371 14136 6.430962 TTTTGGATGGGAATTTGATGTTGA 57.569 33.333 0.00 0.00 0.00 3.18
9372 14137 7.065324 CAGATTTTGGATGGGAATTTGATGTTG 59.935 37.037 0.00 0.00 0.00 3.33
9373 14138 7.107542 CAGATTTTGGATGGGAATTTGATGTT 58.892 34.615 0.00 0.00 0.00 2.71
9374 14139 6.214005 ACAGATTTTGGATGGGAATTTGATGT 59.786 34.615 0.00 0.00 0.00 3.06
9375 14140 6.646267 ACAGATTTTGGATGGGAATTTGATG 58.354 36.000 0.00 0.00 0.00 3.07
9376 14141 6.670902 AGACAGATTTTGGATGGGAATTTGAT 59.329 34.615 0.00 0.00 0.00 2.57
9377 14142 6.018469 AGACAGATTTTGGATGGGAATTTGA 58.982 36.000 0.00 0.00 0.00 2.69
9378 14143 6.290294 AGACAGATTTTGGATGGGAATTTG 57.710 37.500 0.00 0.00 0.00 2.32
9379 14144 5.423290 GGAGACAGATTTTGGATGGGAATTT 59.577 40.000 0.00 0.00 0.00 1.82
9380 14145 4.958581 GGAGACAGATTTTGGATGGGAATT 59.041 41.667 0.00 0.00 0.00 2.17
9381 14146 4.017222 TGGAGACAGATTTTGGATGGGAAT 60.017 41.667 0.00 0.00 35.01 3.01
9382 14147 3.333381 TGGAGACAGATTTTGGATGGGAA 59.667 43.478 0.00 0.00 35.01 3.97
9383 14148 2.918934 TGGAGACAGATTTTGGATGGGA 59.081 45.455 0.00 0.00 35.01 4.37
9384 14149 3.370840 TGGAGACAGATTTTGGATGGG 57.629 47.619 0.00 0.00 35.01 4.00
9408 14268 3.612860 CGTGTGCACTGGAGTAGTATTTC 59.387 47.826 19.41 0.00 37.60 2.17
9414 14274 0.526211 TAGCGTGTGCACTGGAGTAG 59.474 55.000 19.41 2.72 46.23 2.57
9543 14403 6.293244 GCAGACCTCGTAACACAATTAAGTTT 60.293 38.462 0.69 0.00 0.00 2.66
9586 14446 5.319139 CACATGCGAAGATTAACTGAACTG 58.681 41.667 0.00 0.00 0.00 3.16
9608 14468 2.239402 TGCCTACTCCTTTCATCATGCA 59.761 45.455 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.