Multiple sequence alignment - TraesCS6A01G022000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G022000 chr6A 100.000 2549 0 0 1 2549 11040273 11037725 0.000000e+00 4708.0
1 TraesCS6A01G022000 chr6A 97.315 149 4 0 1 149 2590671 2590523 1.170000e-63 254.0
2 TraesCS6A01G022000 chr6A 96.689 151 4 1 2 152 560823236 560823087 1.510000e-62 250.0
3 TraesCS6A01G022000 chr3A 97.466 1776 41 4 778 2549 479470605 479468830 0.000000e+00 3027.0
4 TraesCS6A01G022000 chr3A 74.934 758 176 11 968 1716 264766730 264767482 4.060000e-88 335.0
5 TraesCS6A01G022000 chr3A 96.875 160 3 2 1 160 31240353 31240510 1.500000e-67 267.0
6 TraesCS6A01G022000 chr3A 96.078 153 6 0 2 154 31239477 31239325 1.510000e-62 250.0
7 TraesCS6A01G022000 chr4B 97.185 1776 38 5 778 2549 57970625 57968858 0.000000e+00 2992.0
8 TraesCS6A01G022000 chr4B 78.712 559 110 6 1276 1826 429713222 429713779 5.180000e-97 364.0
9 TraesCS6A01G022000 chrUn 96.284 1776 62 4 778 2549 40720550 40718775 0.000000e+00 2911.0
10 TraesCS6A01G022000 chrUn 96.284 1776 62 4 778 2549 220128020 220126245 0.000000e+00 2911.0
11 TraesCS6A01G022000 chr7A 95.457 1783 76 5 772 2549 88804025 88805807 0.000000e+00 2839.0
12 TraesCS6A01G022000 chr7A 79.440 822 157 9 1022 1833 621550921 621551740 2.850000e-159 571.0
13 TraesCS6A01G022000 chr7A 96.178 157 5 1 1 157 729318211 729318366 3.250000e-64 255.0
14 TraesCS6A01G022000 chr7A 96.078 153 5 1 1 153 645313823 645313974 5.450000e-62 248.0
15 TraesCS6A01G022000 chr7A 94.872 39 2 0 792 830 237747437 237747475 7.610000e-06 62.1
16 TraesCS6A01G022000 chr5D 96.529 605 9 4 149 750 437689847 437690442 0.000000e+00 990.0
17 TraesCS6A01G022000 chr5D 84.932 219 33 0 2328 2546 380169916 380170134 3.300000e-54 222.0
18 TraesCS6A01G022000 chr1B 92.227 476 19 8 151 621 262922772 262923234 0.000000e+00 658.0
19 TraesCS6A01G022000 chr1B 88.689 389 14 18 358 743 16396683 16396322 5.000000e-122 448.0
20 TraesCS6A01G022000 chr1B 94.656 131 4 3 618 747 262923551 262923679 1.550000e-47 200.0
21 TraesCS6A01G022000 chr1B 97.222 108 3 0 151 258 16396795 16396688 1.560000e-42 183.0
22 TraesCS6A01G022000 chr7B 78.990 871 173 6 963 1826 617791581 617792448 1.020000e-163 586.0
23 TraesCS6A01G022000 chr7B 90.816 294 21 6 150 437 453168535 453168828 3.080000e-104 388.0
24 TraesCS6A01G022000 chr7B 84.932 219 33 0 2328 2546 107600243 107600025 3.300000e-54 222.0
25 TraesCS6A01G022000 chr7B 84.018 219 35 0 2328 2546 450623831 450624049 7.140000e-51 211.0
26 TraesCS6A01G022000 chr7B 85.185 81 10 2 586 665 734033915 734033994 5.840000e-12 82.4
27 TraesCS6A01G022000 chr6B 82.488 611 78 21 149 749 43495154 43494563 2.260000e-140 508.0
28 TraesCS6A01G022000 chr3D 90.236 297 22 6 150 439 613078388 613078684 5.150000e-102 381.0
29 TraesCS6A01G022000 chr3D 86.522 230 22 6 524 750 613078796 613079019 7.040000e-61 244.0
30 TraesCS6A01G022000 chr2A 95.732 164 5 2 1 164 55474969 55474808 1.940000e-66 263.0
31 TraesCS6A01G022000 chr2A 85.388 219 32 0 2328 2546 516131409 516131627 7.090000e-56 228.0
32 TraesCS6A01G022000 chr2B 97.987 149 3 0 1 149 771008794 771008942 2.520000e-65 259.0
33 TraesCS6A01G022000 chr4A 96.078 153 6 0 4 156 37829385 37829233 1.510000e-62 250.0
34 TraesCS6A01G022000 chr1A 84.475 219 34 0 2328 2546 53663291 53663509 1.540000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G022000 chr6A 11037725 11040273 2548 True 4708.0 4708 100.0000 1 2549 1 chr6A.!!$R2 2548
1 TraesCS6A01G022000 chr3A 479468830 479470605 1775 True 3027.0 3027 97.4660 778 2549 1 chr3A.!!$R2 1771
2 TraesCS6A01G022000 chr3A 264766730 264767482 752 False 335.0 335 74.9340 968 1716 1 chr3A.!!$F2 748
3 TraesCS6A01G022000 chr4B 57968858 57970625 1767 True 2992.0 2992 97.1850 778 2549 1 chr4B.!!$R1 1771
4 TraesCS6A01G022000 chr4B 429713222 429713779 557 False 364.0 364 78.7120 1276 1826 1 chr4B.!!$F1 550
5 TraesCS6A01G022000 chrUn 40718775 40720550 1775 True 2911.0 2911 96.2840 778 2549 1 chrUn.!!$R1 1771
6 TraesCS6A01G022000 chrUn 220126245 220128020 1775 True 2911.0 2911 96.2840 778 2549 1 chrUn.!!$R2 1771
7 TraesCS6A01G022000 chr7A 88804025 88805807 1782 False 2839.0 2839 95.4570 772 2549 1 chr7A.!!$F1 1777
8 TraesCS6A01G022000 chr7A 621550921 621551740 819 False 571.0 571 79.4400 1022 1833 1 chr7A.!!$F3 811
9 TraesCS6A01G022000 chr5D 437689847 437690442 595 False 990.0 990 96.5290 149 750 1 chr5D.!!$F2 601
10 TraesCS6A01G022000 chr1B 262922772 262923679 907 False 429.0 658 93.4415 151 747 2 chr1B.!!$F1 596
11 TraesCS6A01G022000 chr7B 617791581 617792448 867 False 586.0 586 78.9900 963 1826 1 chr7B.!!$F3 863
12 TraesCS6A01G022000 chr6B 43494563 43495154 591 True 508.0 508 82.4880 149 749 1 chr6B.!!$R1 600
13 TraesCS6A01G022000 chr3D 613078388 613079019 631 False 312.5 381 88.3790 150 750 2 chr3D.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.038526 GCGAAGAGTTGAGGGACGAA 60.039 55.0 0.00 0.0 0.0 3.85 F
949 1348 0.107165 GAGCGCTGGGGTTTTATCCT 60.107 55.0 18.48 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1436 1838 0.034756 CACCTCACCAATCCGTGACA 59.965 55.0 0.0 0.0 37.85 3.58 R
2059 2468 0.608856 AGCAATGATGTTGTCCGCCA 60.609 50.0 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.607457 TACGCGTGGTCAAAACTGG 58.393 52.632 24.59 0.00 0.00 4.00
19 20 0.881159 TACGCGTGGTCAAAACTGGG 60.881 55.000 24.59 0.00 0.00 4.45
20 21 2.184167 CGCGTGGTCAAAACTGGGT 61.184 57.895 0.00 0.00 0.00 4.51
21 22 1.720694 CGCGTGGTCAAAACTGGGTT 61.721 55.000 0.00 0.00 0.00 4.11
22 23 0.248866 GCGTGGTCAAAACTGGGTTG 60.249 55.000 0.00 0.00 0.00 3.77
23 24 1.384525 CGTGGTCAAAACTGGGTTGA 58.615 50.000 0.00 0.00 32.62 3.18
29 30 2.297701 TCAAAACTGGGTTGACTCAGC 58.702 47.619 10.84 0.00 34.57 4.26
30 31 2.023673 CAAAACTGGGTTGACTCAGCA 58.976 47.619 10.84 0.00 34.57 4.41
31 32 1.972872 AAACTGGGTTGACTCAGCAG 58.027 50.000 10.84 0.00 34.57 4.24
32 33 0.536006 AACTGGGTTGACTCAGCAGC 60.536 55.000 10.84 0.00 34.57 5.25
33 34 1.071987 CTGGGTTGACTCAGCAGCA 59.928 57.895 0.00 0.00 0.00 4.41
34 35 0.954449 CTGGGTTGACTCAGCAGCAG 60.954 60.000 0.00 0.00 0.00 4.24
35 36 1.673665 GGGTTGACTCAGCAGCAGG 60.674 63.158 0.00 0.00 0.00 4.85
36 37 1.673665 GGTTGACTCAGCAGCAGGG 60.674 63.158 0.00 0.00 0.00 4.45
37 38 1.372683 GTTGACTCAGCAGCAGGGA 59.627 57.895 0.00 0.00 0.00 4.20
38 39 0.952984 GTTGACTCAGCAGCAGGGAC 60.953 60.000 0.00 0.00 0.00 4.46
39 40 2.125753 GACTCAGCAGCAGGGACG 60.126 66.667 0.00 0.00 0.00 4.79
40 41 2.601666 ACTCAGCAGCAGGGACGA 60.602 61.111 0.00 0.00 0.00 4.20
41 42 2.159819 GACTCAGCAGCAGGGACGAA 62.160 60.000 0.00 0.00 0.00 3.85
42 43 1.004560 CTCAGCAGCAGGGACGAAA 60.005 57.895 0.00 0.00 0.00 3.46
43 44 0.603707 CTCAGCAGCAGGGACGAAAA 60.604 55.000 0.00 0.00 0.00 2.29
44 45 0.603707 TCAGCAGCAGGGACGAAAAG 60.604 55.000 0.00 0.00 0.00 2.27
45 46 0.886490 CAGCAGCAGGGACGAAAAGT 60.886 55.000 0.00 0.00 0.00 2.66
46 47 0.886490 AGCAGCAGGGACGAAAAGTG 60.886 55.000 0.00 0.00 0.00 3.16
47 48 0.884704 GCAGCAGGGACGAAAAGTGA 60.885 55.000 0.00 0.00 0.00 3.41
48 49 0.868406 CAGCAGGGACGAAAAGTGAC 59.132 55.000 0.00 0.00 0.00 3.67
49 50 0.250338 AGCAGGGACGAAAAGTGACC 60.250 55.000 0.00 0.00 0.00 4.02
50 51 1.566018 GCAGGGACGAAAAGTGACCG 61.566 60.000 0.00 0.00 33.19 4.79
51 52 0.949105 CAGGGACGAAAAGTGACCGG 60.949 60.000 0.00 0.00 33.19 5.28
52 53 1.070275 GGGACGAAAAGTGACCGGT 59.930 57.895 6.92 6.92 0.00 5.28
53 54 0.533531 GGGACGAAAAGTGACCGGTT 60.534 55.000 9.42 0.00 0.00 4.44
54 55 1.302366 GGACGAAAAGTGACCGGTTT 58.698 50.000 9.42 0.00 0.00 3.27
55 56 1.672363 GGACGAAAAGTGACCGGTTTT 59.328 47.619 9.42 4.83 0.00 2.43
56 57 2.540157 GGACGAAAAGTGACCGGTTTTG 60.540 50.000 9.42 4.95 0.00 2.44
57 58 2.352342 GACGAAAAGTGACCGGTTTTGA 59.648 45.455 9.42 0.00 0.00 2.69
58 59 2.353579 ACGAAAAGTGACCGGTTTTGAG 59.646 45.455 9.42 6.14 0.00 3.02
59 60 2.610374 CGAAAAGTGACCGGTTTTGAGA 59.390 45.455 9.42 0.00 0.00 3.27
60 61 3.303132 CGAAAAGTGACCGGTTTTGAGAG 60.303 47.826 9.42 0.00 0.00 3.20
61 62 3.277142 AAAGTGACCGGTTTTGAGAGT 57.723 42.857 9.42 0.00 0.00 3.24
62 63 3.277142 AAGTGACCGGTTTTGAGAGTT 57.723 42.857 9.42 0.00 0.00 3.01
63 64 2.835027 AGTGACCGGTTTTGAGAGTTC 58.165 47.619 9.42 0.00 0.00 3.01
64 65 1.525619 GTGACCGGTTTTGAGAGTTCG 59.474 52.381 9.42 0.00 0.00 3.95
65 66 1.145803 GACCGGTTTTGAGAGTTCGG 58.854 55.000 9.42 0.00 42.69 4.30
66 67 0.250166 ACCGGTTTTGAGAGTTCGGG 60.250 55.000 0.00 0.00 41.49 5.14
67 68 0.953960 CCGGTTTTGAGAGTTCGGGG 60.954 60.000 0.00 0.00 34.54 5.73
68 69 0.250166 CGGTTTTGAGAGTTCGGGGT 60.250 55.000 0.00 0.00 0.00 4.95
69 70 1.235724 GGTTTTGAGAGTTCGGGGTG 58.764 55.000 0.00 0.00 0.00 4.61
70 71 0.591659 GTTTTGAGAGTTCGGGGTGC 59.408 55.000 0.00 0.00 0.00 5.01
71 72 0.181587 TTTTGAGAGTTCGGGGTGCA 59.818 50.000 0.00 0.00 0.00 4.57
72 73 0.534203 TTTGAGAGTTCGGGGTGCAC 60.534 55.000 8.80 8.80 0.00 4.57
73 74 1.407656 TTGAGAGTTCGGGGTGCACT 61.408 55.000 17.98 0.00 0.00 4.40
74 75 1.371558 GAGAGTTCGGGGTGCACTT 59.628 57.895 17.98 0.00 0.00 3.16
75 76 0.250338 GAGAGTTCGGGGTGCACTTT 60.250 55.000 17.98 0.00 0.00 2.66
76 77 0.535102 AGAGTTCGGGGTGCACTTTG 60.535 55.000 17.98 6.61 0.00 2.77
77 78 0.818040 GAGTTCGGGGTGCACTTTGT 60.818 55.000 17.98 0.00 0.00 2.83
78 79 0.818040 AGTTCGGGGTGCACTTTGTC 60.818 55.000 17.98 0.00 0.00 3.18
79 80 1.527380 TTCGGGGTGCACTTTGTCC 60.527 57.895 17.98 8.74 0.00 4.02
80 81 3.353836 CGGGGTGCACTTTGTCCG 61.354 66.667 17.98 17.00 0.00 4.79
81 82 2.983592 GGGGTGCACTTTGTCCGG 60.984 66.667 17.98 0.00 0.00 5.14
82 83 2.203294 GGGTGCACTTTGTCCGGT 60.203 61.111 17.98 0.00 0.00 5.28
83 84 1.826487 GGGTGCACTTTGTCCGGTT 60.826 57.895 17.98 0.00 0.00 4.44
84 85 1.388837 GGGTGCACTTTGTCCGGTTT 61.389 55.000 17.98 0.00 0.00 3.27
85 86 0.458260 GGTGCACTTTGTCCGGTTTT 59.542 50.000 17.98 0.00 0.00 2.43
86 87 1.677052 GGTGCACTTTGTCCGGTTTTA 59.323 47.619 17.98 0.00 0.00 1.52
87 88 2.287368 GGTGCACTTTGTCCGGTTTTAG 60.287 50.000 17.98 0.00 0.00 1.85
88 89 2.614983 GTGCACTTTGTCCGGTTTTAGA 59.385 45.455 10.32 0.00 0.00 2.10
89 90 2.875933 TGCACTTTGTCCGGTTTTAGAG 59.124 45.455 0.00 0.00 0.00 2.43
90 91 2.876550 GCACTTTGTCCGGTTTTAGAGT 59.123 45.455 0.00 0.00 0.00 3.24
91 92 3.314357 GCACTTTGTCCGGTTTTAGAGTT 59.686 43.478 0.00 0.00 0.00 3.01
92 93 4.788521 GCACTTTGTCCGGTTTTAGAGTTG 60.789 45.833 0.00 0.00 0.00 3.16
93 94 4.573201 CACTTTGTCCGGTTTTAGAGTTGA 59.427 41.667 0.00 0.00 0.00 3.18
94 95 4.814771 ACTTTGTCCGGTTTTAGAGTTGAG 59.185 41.667 0.00 0.00 0.00 3.02
95 96 3.396260 TGTCCGGTTTTAGAGTTGAGG 57.604 47.619 0.00 0.00 0.00 3.86
96 97 2.038033 TGTCCGGTTTTAGAGTTGAGGG 59.962 50.000 0.00 0.00 0.00 4.30
97 98 2.301009 GTCCGGTTTTAGAGTTGAGGGA 59.699 50.000 0.00 0.00 0.00 4.20
98 99 2.301009 TCCGGTTTTAGAGTTGAGGGAC 59.699 50.000 0.00 0.00 0.00 4.46
99 100 2.334838 CGGTTTTAGAGTTGAGGGACG 58.665 52.381 0.00 0.00 0.00 4.79
100 101 2.029649 CGGTTTTAGAGTTGAGGGACGA 60.030 50.000 0.00 0.00 0.00 4.20
101 102 3.553508 CGGTTTTAGAGTTGAGGGACGAA 60.554 47.826 0.00 0.00 0.00 3.85
102 103 4.383173 GGTTTTAGAGTTGAGGGACGAAA 58.617 43.478 0.00 0.00 0.00 3.46
103 104 4.818005 GGTTTTAGAGTTGAGGGACGAAAA 59.182 41.667 0.00 0.00 0.00 2.29
104 105 5.277683 GGTTTTAGAGTTGAGGGACGAAAAC 60.278 44.000 0.00 0.00 34.45 2.43
105 106 4.950205 TTAGAGTTGAGGGACGAAAACT 57.050 40.909 0.00 0.00 35.62 2.66
106 107 6.409524 TTTAGAGTTGAGGGACGAAAACTA 57.590 37.500 0.00 0.00 33.14 2.24
107 108 4.950205 AGAGTTGAGGGACGAAAACTAA 57.050 40.909 0.00 0.00 33.14 2.24
108 109 5.286267 AGAGTTGAGGGACGAAAACTAAA 57.714 39.130 0.00 0.00 33.14 1.85
109 110 5.055144 AGAGTTGAGGGACGAAAACTAAAC 58.945 41.667 0.00 0.00 33.14 2.01
110 111 5.032327 AGTTGAGGGACGAAAACTAAACT 57.968 39.130 0.00 0.00 32.35 2.66
111 112 5.434408 AGTTGAGGGACGAAAACTAAACTT 58.566 37.500 0.00 0.00 33.17 2.66
112 113 5.884232 AGTTGAGGGACGAAAACTAAACTTT 59.116 36.000 0.00 0.00 33.17 2.66
113 114 5.744666 TGAGGGACGAAAACTAAACTTTG 57.255 39.130 0.00 0.00 0.00 2.77
114 115 4.035909 TGAGGGACGAAAACTAAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
115 116 3.002965 AGGGACGAAAACTAAACTTTGCG 59.997 43.478 0.00 0.00 0.00 4.85
116 117 3.002553 GGGACGAAAACTAAACTTTGCGA 59.997 43.478 0.00 0.00 0.00 5.10
117 118 4.496175 GGGACGAAAACTAAACTTTGCGAA 60.496 41.667 0.00 0.00 0.00 4.70
118 119 4.669283 GGACGAAAACTAAACTTTGCGAAG 59.331 41.667 12.41 12.41 38.87 3.79
119 120 5.473796 ACGAAAACTAAACTTTGCGAAGA 57.526 34.783 20.86 0.00 36.69 2.87
120 121 5.499047 ACGAAAACTAAACTTTGCGAAGAG 58.501 37.500 20.86 9.77 36.69 2.85
121 122 5.064325 ACGAAAACTAAACTTTGCGAAGAGT 59.936 36.000 20.86 10.42 36.69 3.24
122 123 5.963586 CGAAAACTAAACTTTGCGAAGAGTT 59.036 36.000 20.86 15.53 37.69 3.01
123 124 6.076092 CGAAAACTAAACTTTGCGAAGAGTTG 60.076 38.462 20.86 10.22 36.31 3.16
124 125 6.431198 AAACTAAACTTTGCGAAGAGTTGA 57.569 33.333 20.86 0.00 36.31 3.18
125 126 5.659048 ACTAAACTTTGCGAAGAGTTGAG 57.341 39.130 20.86 9.29 39.34 3.02
126 127 3.971032 AAACTTTGCGAAGAGTTGAGG 57.029 42.857 20.86 0.00 36.31 3.86
127 128 1.884235 ACTTTGCGAAGAGTTGAGGG 58.116 50.000 20.86 0.00 36.69 4.30
128 129 1.416401 ACTTTGCGAAGAGTTGAGGGA 59.584 47.619 20.86 0.00 36.69 4.20
129 130 1.801178 CTTTGCGAAGAGTTGAGGGAC 59.199 52.381 8.08 0.00 34.71 4.46
130 131 0.319555 TTGCGAAGAGTTGAGGGACG 60.320 55.000 0.00 0.00 0.00 4.79
131 132 1.176619 TGCGAAGAGTTGAGGGACGA 61.177 55.000 0.00 0.00 0.00 4.20
132 133 0.038526 GCGAAGAGTTGAGGGACGAA 60.039 55.000 0.00 0.00 0.00 3.85
133 134 1.604693 GCGAAGAGTTGAGGGACGAAA 60.605 52.381 0.00 0.00 0.00 3.46
134 135 2.750948 CGAAGAGTTGAGGGACGAAAA 58.249 47.619 0.00 0.00 0.00 2.29
135 136 2.731976 CGAAGAGTTGAGGGACGAAAAG 59.268 50.000 0.00 0.00 0.00 2.27
136 137 3.729966 GAAGAGTTGAGGGACGAAAAGT 58.270 45.455 0.00 0.00 0.00 2.66
137 138 4.558095 CGAAGAGTTGAGGGACGAAAAGTA 60.558 45.833 0.00 0.00 0.00 2.24
138 139 5.480205 GAAGAGTTGAGGGACGAAAAGTAT 58.520 41.667 0.00 0.00 0.00 2.12
139 140 6.600882 AAGAGTTGAGGGACGAAAAGTATA 57.399 37.500 0.00 0.00 0.00 1.47
140 141 5.963594 AGAGTTGAGGGACGAAAAGTATAC 58.036 41.667 0.00 0.00 0.00 1.47
141 142 5.715753 AGAGTTGAGGGACGAAAAGTATACT 59.284 40.000 0.00 0.00 0.00 2.12
142 143 6.210984 AGAGTTGAGGGACGAAAAGTATACTT 59.789 38.462 12.50 12.50 37.91 2.24
490 529 0.241481 GCGATTGCCGGGTGTTTTTA 59.759 50.000 2.18 0.00 39.04 1.52
499 541 3.124560 CCGGGTGTTTTTATTTTTGCGT 58.875 40.909 0.00 0.00 0.00 5.24
571 648 6.213600 ACCATCACTAAGAATTGACTGTACCT 59.786 38.462 0.00 0.00 0.00 3.08
572 649 6.758886 CCATCACTAAGAATTGACTGTACCTC 59.241 42.308 0.00 0.00 0.00 3.85
573 650 6.911250 TCACTAAGAATTGACTGTACCTCA 57.089 37.500 0.00 0.00 0.00 3.86
574 651 6.688578 TCACTAAGAATTGACTGTACCTCAC 58.311 40.000 0.00 0.00 0.00 3.51
575 652 5.573282 CACTAAGAATTGACTGTACCTCACG 59.427 44.000 0.00 0.00 0.00 4.35
576 653 4.602340 AAGAATTGACTGTACCTCACGT 57.398 40.909 0.00 0.00 0.00 4.49
577 654 4.175787 AGAATTGACTGTACCTCACGTC 57.824 45.455 0.00 0.00 33.82 4.34
578 655 3.056749 AGAATTGACTGTACCTCACGTCC 60.057 47.826 0.00 0.00 32.90 4.79
758 1156 3.784701 GAAGCATTCGTAGACAGAGGA 57.215 47.619 0.00 0.00 34.17 3.71
759 1157 3.440228 GAAGCATTCGTAGACAGAGGAC 58.560 50.000 0.00 0.00 34.17 3.85
760 1158 1.751924 AGCATTCGTAGACAGAGGACC 59.248 52.381 0.00 0.00 34.32 4.46
761 1159 1.751924 GCATTCGTAGACAGAGGACCT 59.248 52.381 0.00 0.00 34.32 3.85
762 1160 2.223618 GCATTCGTAGACAGAGGACCTC 60.224 54.545 14.15 14.15 34.32 3.85
763 1161 3.283751 CATTCGTAGACAGAGGACCTCT 58.716 50.000 18.94 18.94 42.11 3.69
764 1162 2.695127 TCGTAGACAGAGGACCTCTC 57.305 55.000 21.79 11.67 38.99 3.20
765 1163 1.209990 TCGTAGACAGAGGACCTCTCC 59.790 57.143 21.79 15.51 43.44 3.71
766 1164 1.747898 CGTAGACAGAGGACCTCTCCC 60.748 61.905 21.79 15.16 43.44 4.30
767 1165 1.567175 GTAGACAGAGGACCTCTCCCT 59.433 57.143 21.79 20.84 43.44 4.20
772 1170 3.182284 AGGACCTCTCCCTCACGT 58.818 61.111 0.00 0.00 37.25 4.49
773 1171 2.395613 AGGACCTCTCCCTCACGTA 58.604 57.895 0.00 0.00 37.25 3.57
774 1172 0.927767 AGGACCTCTCCCTCACGTAT 59.072 55.000 0.00 0.00 37.25 3.06
775 1173 1.033574 GGACCTCTCCCTCACGTATG 58.966 60.000 0.00 0.00 0.00 2.39
776 1174 1.409802 GGACCTCTCCCTCACGTATGA 60.410 57.143 0.00 0.00 0.00 2.15
784 1182 1.411216 CCCTCACGTATGACCTAGGGT 60.411 57.143 14.81 1.00 39.44 4.34
876 1274 4.722535 TTGCTCCCTCCCGCCTCT 62.723 66.667 0.00 0.00 0.00 3.69
945 1344 2.353573 GGGAGCGCTGGGGTTTTA 59.646 61.111 18.48 0.00 0.00 1.52
949 1348 0.107165 GAGCGCTGGGGTTTTATCCT 60.107 55.000 18.48 0.00 0.00 3.24
961 1360 5.012768 GGGGTTTTATCCTTAGATCGGATCA 59.987 44.000 19.47 3.72 41.39 2.92
1081 1483 3.307059 CGACTTTGTCTGGGAGGAAGAAT 60.307 47.826 0.00 0.00 0.00 2.40
1151 1553 1.111277 ACGCCAAAAACTTTCAGCCT 58.889 45.000 0.00 0.00 0.00 4.58
1248 1650 2.952978 TCTGTTTACGGCACAATTTGGT 59.047 40.909 0.78 0.00 0.00 3.67
1397 1799 3.002583 TCAGATCCACCGCCTGCA 61.003 61.111 0.00 0.00 0.00 4.41
1398 1800 2.821366 CAGATCCACCGCCTGCAC 60.821 66.667 0.00 0.00 0.00 4.57
1436 1838 2.971598 CGGCTGTGAAGGGGATGGT 61.972 63.158 0.00 0.00 0.00 3.55
1481 1883 0.316204 GTGCAGCTGAAATTGCCTGT 59.684 50.000 20.43 0.00 39.54 4.00
1538 1940 7.410800 TCAAGATTGATGTGAATGCAAAAAC 57.589 32.000 0.00 0.00 31.01 2.43
1833 2242 2.500509 CCAAAGCTGGCGTTTTAACA 57.499 45.000 0.00 0.00 35.39 2.41
1836 2245 2.774439 AAGCTGGCGTTTTAACACTG 57.226 45.000 0.00 0.00 0.00 3.66
1867 2276 4.711949 CCCTGCAGCCGCTTCTGT 62.712 66.667 8.66 0.00 39.64 3.41
1940 2349 2.086610 ACCAAAGTGAGCAAACCCAT 57.913 45.000 0.00 0.00 0.00 4.00
2068 2477 1.096416 AAACGTTTCTTGGCGGACAA 58.904 45.000 7.96 0.00 37.55 3.18
2089 2498 2.766263 ACATCATTGCTCCTAGTTCGGA 59.234 45.455 0.00 0.00 0.00 4.55
2124 2533 2.278332 AGAAGGAGGGAAAACTGCAC 57.722 50.000 0.00 0.00 0.00 4.57
2196 2605 2.093447 CCTCCACCTCCAGTGTATGTTC 60.093 54.545 0.00 0.00 45.74 3.18
2213 2622 1.612442 TCCCCCGAGGAAGGAAGTG 60.612 63.158 0.00 0.00 43.78 3.16
2304 2713 7.397221 AGTGATAAGTGATGACAGGATGAAAA 58.603 34.615 0.00 0.00 39.69 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.881159 CCCAGTTTTGACCACGCGTA 60.881 55.000 13.44 0.00 0.00 4.42
2 3 1.720694 AACCCAGTTTTGACCACGCG 61.721 55.000 3.53 3.53 0.00 6.01
3 4 0.248866 CAACCCAGTTTTGACCACGC 60.249 55.000 0.00 0.00 0.00 5.34
5 6 2.863401 GTCAACCCAGTTTTGACCAC 57.137 50.000 4.22 0.00 44.79 4.16
9 10 2.297701 GCTGAGTCAACCCAGTTTTGA 58.702 47.619 0.00 0.00 33.19 2.69
10 11 2.023673 TGCTGAGTCAACCCAGTTTTG 58.976 47.619 0.00 0.00 33.19 2.44
11 12 2.301346 CTGCTGAGTCAACCCAGTTTT 58.699 47.619 0.00 0.00 33.19 2.43
12 13 1.972872 CTGCTGAGTCAACCCAGTTT 58.027 50.000 0.00 0.00 33.19 2.66
13 14 0.536006 GCTGCTGAGTCAACCCAGTT 60.536 55.000 13.48 0.00 33.19 3.16
14 15 1.072159 GCTGCTGAGTCAACCCAGT 59.928 57.895 13.48 0.00 33.19 4.00
15 16 0.954449 CTGCTGCTGAGTCAACCCAG 60.954 60.000 0.00 9.57 0.00 4.45
16 17 1.071987 CTGCTGCTGAGTCAACCCA 59.928 57.895 0.00 0.00 0.00 4.51
17 18 1.673665 CCTGCTGCTGAGTCAACCC 60.674 63.158 8.20 0.00 0.00 4.11
18 19 1.673665 CCCTGCTGCTGAGTCAACC 60.674 63.158 8.20 0.00 0.00 3.77
19 20 0.952984 GTCCCTGCTGCTGAGTCAAC 60.953 60.000 8.20 0.00 0.00 3.18
20 21 1.372683 GTCCCTGCTGCTGAGTCAA 59.627 57.895 8.20 0.00 0.00 3.18
21 22 2.935740 CGTCCCTGCTGCTGAGTCA 61.936 63.158 8.20 0.00 0.00 3.41
22 23 2.125753 CGTCCCTGCTGCTGAGTC 60.126 66.667 8.20 0.00 0.00 3.36
23 24 1.758440 TTTCGTCCCTGCTGCTGAGT 61.758 55.000 8.20 0.00 0.00 3.41
24 25 0.603707 TTTTCGTCCCTGCTGCTGAG 60.604 55.000 8.20 0.00 0.00 3.35
25 26 0.603707 CTTTTCGTCCCTGCTGCTGA 60.604 55.000 8.20 0.00 0.00 4.26
26 27 0.886490 ACTTTTCGTCCCTGCTGCTG 60.886 55.000 0.00 0.00 0.00 4.41
27 28 0.886490 CACTTTTCGTCCCTGCTGCT 60.886 55.000 0.00 0.00 0.00 4.24
28 29 0.884704 TCACTTTTCGTCCCTGCTGC 60.885 55.000 0.00 0.00 0.00 5.25
29 30 0.868406 GTCACTTTTCGTCCCTGCTG 59.132 55.000 0.00 0.00 0.00 4.41
30 31 0.250338 GGTCACTTTTCGTCCCTGCT 60.250 55.000 0.00 0.00 0.00 4.24
31 32 1.566018 CGGTCACTTTTCGTCCCTGC 61.566 60.000 0.00 0.00 0.00 4.85
32 33 0.949105 CCGGTCACTTTTCGTCCCTG 60.949 60.000 0.00 0.00 0.00 4.45
33 34 1.370064 CCGGTCACTTTTCGTCCCT 59.630 57.895 0.00 0.00 0.00 4.20
34 35 0.533531 AACCGGTCACTTTTCGTCCC 60.534 55.000 8.04 0.00 0.00 4.46
35 36 1.302366 AAACCGGTCACTTTTCGTCC 58.698 50.000 8.04 0.00 0.00 4.79
36 37 2.352342 TCAAAACCGGTCACTTTTCGTC 59.648 45.455 8.04 0.00 0.00 4.20
37 38 2.353579 CTCAAAACCGGTCACTTTTCGT 59.646 45.455 8.04 0.00 0.00 3.85
38 39 2.610374 TCTCAAAACCGGTCACTTTTCG 59.390 45.455 8.04 0.36 0.00 3.46
39 40 3.626217 ACTCTCAAAACCGGTCACTTTTC 59.374 43.478 8.04 0.00 0.00 2.29
40 41 3.617284 ACTCTCAAAACCGGTCACTTTT 58.383 40.909 8.04 0.80 0.00 2.27
41 42 3.277142 ACTCTCAAAACCGGTCACTTT 57.723 42.857 8.04 1.26 0.00 2.66
42 43 3.203716 GAACTCTCAAAACCGGTCACTT 58.796 45.455 8.04 0.00 0.00 3.16
43 44 2.802057 CGAACTCTCAAAACCGGTCACT 60.802 50.000 8.04 0.00 0.00 3.41
44 45 1.525619 CGAACTCTCAAAACCGGTCAC 59.474 52.381 8.04 0.00 0.00 3.67
45 46 1.539496 CCGAACTCTCAAAACCGGTCA 60.539 52.381 8.04 0.00 33.02 4.02
46 47 1.145803 CCGAACTCTCAAAACCGGTC 58.854 55.000 8.04 0.00 33.02 4.79
47 48 0.250166 CCCGAACTCTCAAAACCGGT 60.250 55.000 0.00 0.00 35.61 5.28
48 49 0.953960 CCCCGAACTCTCAAAACCGG 60.954 60.000 0.00 0.00 36.98 5.28
49 50 0.250166 ACCCCGAACTCTCAAAACCG 60.250 55.000 0.00 0.00 0.00 4.44
50 51 1.235724 CACCCCGAACTCTCAAAACC 58.764 55.000 0.00 0.00 0.00 3.27
51 52 0.591659 GCACCCCGAACTCTCAAAAC 59.408 55.000 0.00 0.00 0.00 2.43
52 53 0.181587 TGCACCCCGAACTCTCAAAA 59.818 50.000 0.00 0.00 0.00 2.44
53 54 0.534203 GTGCACCCCGAACTCTCAAA 60.534 55.000 5.22 0.00 0.00 2.69
54 55 1.070786 GTGCACCCCGAACTCTCAA 59.929 57.895 5.22 0.00 0.00 3.02
55 56 1.407656 AAGTGCACCCCGAACTCTCA 61.408 55.000 14.63 0.00 0.00 3.27
56 57 0.250338 AAAGTGCACCCCGAACTCTC 60.250 55.000 14.63 0.00 0.00 3.20
57 58 0.535102 CAAAGTGCACCCCGAACTCT 60.535 55.000 14.63 0.00 0.00 3.24
58 59 0.818040 ACAAAGTGCACCCCGAACTC 60.818 55.000 14.63 0.00 0.00 3.01
59 60 0.818040 GACAAAGTGCACCCCGAACT 60.818 55.000 14.63 0.00 0.00 3.01
60 61 1.652563 GACAAAGTGCACCCCGAAC 59.347 57.895 14.63 0.00 0.00 3.95
61 62 1.527380 GGACAAAGTGCACCCCGAA 60.527 57.895 14.63 0.00 0.00 4.30
62 63 2.112297 GGACAAAGTGCACCCCGA 59.888 61.111 14.63 0.00 0.00 5.14
63 64 3.353836 CGGACAAAGTGCACCCCG 61.354 66.667 14.63 14.58 0.00 5.73
64 65 2.983592 CCGGACAAAGTGCACCCC 60.984 66.667 14.63 6.50 0.00 4.95
65 66 1.388837 AAACCGGACAAAGTGCACCC 61.389 55.000 14.63 6.08 0.00 4.61
66 67 0.458260 AAAACCGGACAAAGTGCACC 59.542 50.000 14.63 0.00 0.00 5.01
67 68 2.614983 TCTAAAACCGGACAAAGTGCAC 59.385 45.455 9.46 9.40 0.00 4.57
68 69 2.875933 CTCTAAAACCGGACAAAGTGCA 59.124 45.455 9.46 0.00 0.00 4.57
69 70 2.876550 ACTCTAAAACCGGACAAAGTGC 59.123 45.455 9.46 0.00 0.00 4.40
70 71 4.573201 TCAACTCTAAAACCGGACAAAGTG 59.427 41.667 9.46 3.86 0.00 3.16
71 72 4.773013 TCAACTCTAAAACCGGACAAAGT 58.227 39.130 9.46 0.31 0.00 2.66
72 73 4.213482 CCTCAACTCTAAAACCGGACAAAG 59.787 45.833 9.46 0.00 0.00 2.77
73 74 4.131596 CCTCAACTCTAAAACCGGACAAA 58.868 43.478 9.46 0.00 0.00 2.83
74 75 3.495453 CCCTCAACTCTAAAACCGGACAA 60.495 47.826 9.46 0.00 0.00 3.18
75 76 2.038033 CCCTCAACTCTAAAACCGGACA 59.962 50.000 9.46 0.00 0.00 4.02
76 77 2.301009 TCCCTCAACTCTAAAACCGGAC 59.699 50.000 9.46 0.00 0.00 4.79
77 78 2.301009 GTCCCTCAACTCTAAAACCGGA 59.699 50.000 9.46 0.00 0.00 5.14
78 79 2.696506 GTCCCTCAACTCTAAAACCGG 58.303 52.381 0.00 0.00 0.00 5.28
79 80 2.029649 TCGTCCCTCAACTCTAAAACCG 60.030 50.000 0.00 0.00 0.00 4.44
80 81 3.672767 TCGTCCCTCAACTCTAAAACC 57.327 47.619 0.00 0.00 0.00 3.27
81 82 5.526479 AGTTTTCGTCCCTCAACTCTAAAAC 59.474 40.000 0.00 0.00 36.38 2.43
82 83 5.677567 AGTTTTCGTCCCTCAACTCTAAAA 58.322 37.500 0.00 0.00 0.00 1.52
83 84 5.286267 AGTTTTCGTCCCTCAACTCTAAA 57.714 39.130 0.00 0.00 0.00 1.85
84 85 4.950205 AGTTTTCGTCCCTCAACTCTAA 57.050 40.909 0.00 0.00 0.00 2.10
85 86 6.041296 AGTTTAGTTTTCGTCCCTCAACTCTA 59.959 38.462 0.00 0.00 31.83 2.43
86 87 4.950205 TTAGTTTTCGTCCCTCAACTCT 57.050 40.909 0.00 0.00 31.83 3.24
87 88 5.055144 AGTTTAGTTTTCGTCCCTCAACTC 58.945 41.667 0.00 0.00 31.83 3.01
88 89 5.032327 AGTTTAGTTTTCGTCCCTCAACT 57.968 39.130 0.00 0.00 33.95 3.16
89 90 5.746307 AAGTTTAGTTTTCGTCCCTCAAC 57.254 39.130 0.00 0.00 0.00 3.18
90 91 5.449451 GCAAAGTTTAGTTTTCGTCCCTCAA 60.449 40.000 0.00 0.00 0.00 3.02
91 92 4.035909 GCAAAGTTTAGTTTTCGTCCCTCA 59.964 41.667 0.00 0.00 0.00 3.86
92 93 4.534168 GCAAAGTTTAGTTTTCGTCCCTC 58.466 43.478 0.00 0.00 0.00 4.30
93 94 3.002965 CGCAAAGTTTAGTTTTCGTCCCT 59.997 43.478 0.00 0.00 0.00 4.20
94 95 3.002553 TCGCAAAGTTTAGTTTTCGTCCC 59.997 43.478 2.91 0.00 0.00 4.46
95 96 4.199840 TCGCAAAGTTTAGTTTTCGTCC 57.800 40.909 2.91 0.00 0.00 4.79
96 97 5.495502 TCTTCGCAAAGTTTAGTTTTCGTC 58.504 37.500 2.91 0.00 33.95 4.20
97 98 5.064325 ACTCTTCGCAAAGTTTAGTTTTCGT 59.936 36.000 2.91 0.00 33.95 3.85
98 99 5.499047 ACTCTTCGCAAAGTTTAGTTTTCG 58.501 37.500 0.00 0.00 33.95 3.46
99 100 6.964934 TCAACTCTTCGCAAAGTTTAGTTTTC 59.035 34.615 0.00 0.00 33.53 2.29
100 101 6.848451 TCAACTCTTCGCAAAGTTTAGTTTT 58.152 32.000 0.00 0.00 33.53 2.43
101 102 6.431198 TCAACTCTTCGCAAAGTTTAGTTT 57.569 33.333 0.00 0.00 33.53 2.66
102 103 5.007724 CCTCAACTCTTCGCAAAGTTTAGTT 59.992 40.000 0.00 0.00 33.53 2.24
103 104 4.511826 CCTCAACTCTTCGCAAAGTTTAGT 59.488 41.667 0.00 0.00 33.53 2.24
104 105 4.083802 CCCTCAACTCTTCGCAAAGTTTAG 60.084 45.833 0.00 0.00 33.53 1.85
105 106 3.813166 CCCTCAACTCTTCGCAAAGTTTA 59.187 43.478 0.00 0.00 33.53 2.01
106 107 2.618709 CCCTCAACTCTTCGCAAAGTTT 59.381 45.455 0.00 0.00 33.53 2.66
107 108 2.158813 TCCCTCAACTCTTCGCAAAGTT 60.159 45.455 0.00 0.00 36.16 2.66
108 109 1.416401 TCCCTCAACTCTTCGCAAAGT 59.584 47.619 0.00 0.00 33.95 2.66
109 110 1.801178 GTCCCTCAACTCTTCGCAAAG 59.199 52.381 0.00 0.00 0.00 2.77
110 111 1.872237 CGTCCCTCAACTCTTCGCAAA 60.872 52.381 0.00 0.00 0.00 3.68
111 112 0.319555 CGTCCCTCAACTCTTCGCAA 60.320 55.000 0.00 0.00 0.00 4.85
112 113 1.176619 TCGTCCCTCAACTCTTCGCA 61.177 55.000 0.00 0.00 0.00 5.10
113 114 0.038526 TTCGTCCCTCAACTCTTCGC 60.039 55.000 0.00 0.00 0.00 4.70
114 115 2.433868 TTTCGTCCCTCAACTCTTCG 57.566 50.000 0.00 0.00 0.00 3.79
115 116 3.729966 ACTTTTCGTCCCTCAACTCTTC 58.270 45.455 0.00 0.00 0.00 2.87
116 117 3.840124 ACTTTTCGTCCCTCAACTCTT 57.160 42.857 0.00 0.00 0.00 2.85
117 118 5.715753 AGTATACTTTTCGTCCCTCAACTCT 59.284 40.000 0.00 0.00 0.00 3.24
118 119 5.963594 AGTATACTTTTCGTCCCTCAACTC 58.036 41.667 0.00 0.00 0.00 3.01
119 120 5.997384 AGTATACTTTTCGTCCCTCAACT 57.003 39.130 0.00 0.00 0.00 3.16
307 310 9.567848 CCACTTATTCAAATACGTTAGCAAATT 57.432 29.630 0.00 0.00 0.00 1.82
490 529 1.877443 AGTCCGTTAGCACGCAAAAAT 59.123 42.857 0.00 0.00 45.72 1.82
499 541 1.592400 CCTCCGTCAGTCCGTTAGCA 61.592 60.000 0.00 0.00 0.00 3.49
571 648 3.351450 CGTGAGGTGAGGACGTGA 58.649 61.111 0.00 0.00 0.00 4.35
750 1148 3.200918 GAGGGAGAGGTCCTCTGTC 57.799 63.158 26.69 16.66 45.46 3.51
755 1153 0.927767 ATACGTGAGGGAGAGGTCCT 59.072 55.000 0.00 0.00 43.36 3.85
756 1154 1.033574 CATACGTGAGGGAGAGGTCC 58.966 60.000 0.00 0.00 43.05 4.46
757 1155 1.677052 GTCATACGTGAGGGAGAGGTC 59.323 57.143 0.00 0.00 34.36 3.85
758 1156 1.685491 GGTCATACGTGAGGGAGAGGT 60.685 57.143 0.00 0.00 34.36 3.85
759 1157 1.033574 GGTCATACGTGAGGGAGAGG 58.966 60.000 0.00 0.00 34.36 3.69
760 1158 2.060050 AGGTCATACGTGAGGGAGAG 57.940 55.000 0.00 0.00 34.36 3.20
761 1159 2.158652 CCTAGGTCATACGTGAGGGAGA 60.159 54.545 0.00 0.00 34.36 3.71
762 1160 2.231529 CCTAGGTCATACGTGAGGGAG 58.768 57.143 0.00 0.00 34.36 4.30
763 1161 1.133575 CCCTAGGTCATACGTGAGGGA 60.134 57.143 8.29 0.00 38.01 4.20
764 1162 1.329256 CCCTAGGTCATACGTGAGGG 58.671 60.000 8.29 0.00 34.36 4.30
765 1163 2.068834 ACCCTAGGTCATACGTGAGG 57.931 55.000 8.29 0.00 34.36 3.86
766 1164 3.446161 TCAAACCCTAGGTCATACGTGAG 59.554 47.826 8.29 0.00 33.12 3.51
767 1165 3.433343 TCAAACCCTAGGTCATACGTGA 58.567 45.455 8.29 0.00 33.12 4.35
768 1166 3.880047 TCAAACCCTAGGTCATACGTG 57.120 47.619 8.29 0.00 33.12 4.49
769 1167 3.055602 GGTTCAAACCCTAGGTCATACGT 60.056 47.826 8.29 0.00 43.43 3.57
770 1168 3.528532 GGTTCAAACCCTAGGTCATACG 58.471 50.000 8.29 0.00 43.43 3.06
784 1182 2.102925 ACGTCGAAACCCTAGGTTCAAA 59.897 45.455 8.29 0.00 46.20 2.69
949 1348 3.130516 GCCATATCCGTGATCCGATCTAA 59.869 47.826 9.78 0.00 39.56 2.10
961 1360 1.691976 TCTTTCATCCGCCATATCCGT 59.308 47.619 0.00 0.00 0.00 4.69
1081 1483 1.688735 CGGCTCCATCTGATCTGGTAA 59.311 52.381 0.00 0.00 35.19 2.85
1151 1553 3.388345 TGTCACCGTACAGTGCATTAA 57.612 42.857 4.24 0.00 37.68 1.40
1397 1799 3.865745 CGGCTCAATCAGAAAGTTATCGT 59.134 43.478 0.00 0.00 0.00 3.73
1398 1800 3.246226 CCGGCTCAATCAGAAAGTTATCG 59.754 47.826 0.00 0.00 0.00 2.92
1436 1838 0.034756 CACCTCACCAATCCGTGACA 59.965 55.000 0.00 0.00 37.85 3.58
1481 1883 3.207778 ACGAATTCACCGAAGAAACCAA 58.792 40.909 6.22 0.00 0.00 3.67
1538 1940 3.731652 TTCCTTGCTGTCACAATTTGG 57.268 42.857 0.78 0.00 0.00 3.28
1757 2166 1.544982 CCCATTGCATAGCCTCCTCTG 60.545 57.143 0.00 0.00 0.00 3.35
1940 2349 3.504906 CCTTCTGCTTCTGAATTTGAGCA 59.495 43.478 1.48 1.48 0.00 4.26
2059 2468 0.608856 AGCAATGATGTTGTCCGCCA 60.609 50.000 0.00 0.00 0.00 5.69
2068 2477 2.766263 TCCGAACTAGGAGCAATGATGT 59.234 45.455 0.00 0.00 34.92 3.06
2089 2498 3.969976 TCCTTCTACATTATCAGCTGGCT 59.030 43.478 15.13 4.32 0.00 4.75
2124 2533 1.303317 GTGCTGTTACCACCCCCTG 60.303 63.158 0.00 0.00 0.00 4.45
2196 2605 1.198759 TTCACTTCCTTCCTCGGGGG 61.199 60.000 0.00 0.00 0.00 5.40
2213 2622 1.308783 CGCCCTTCTTTGGCCTCTTC 61.309 60.000 3.32 0.00 46.48 2.87
2304 2713 6.239217 TCTATGATTGTCTGCCATGTTACT 57.761 37.500 0.00 0.00 0.00 2.24
2427 2836 1.533965 GGGCAAATTTCTTCGCGATCC 60.534 52.381 10.88 0.19 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.