Multiple sequence alignment - TraesCS6A01G021800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G021800 chr6A 100.000 2969 0 0 1 2969 10925481 10922513 0.000000e+00 5483
1 TraesCS6A01G021800 chr6A 75.157 954 219 17 1025 1969 7987004 7987948 1.630000e-117 433
2 TraesCS6A01G021800 chr6A 75.078 959 213 23 1031 1977 15894452 15893508 9.840000e-115 424
3 TraesCS6A01G021800 chr6D 91.766 1178 69 16 1817 2969 9798245 9797071 0.000000e+00 1613
4 TraesCS6A01G021800 chr6D 77.743 966 206 8 1019 1979 8987441 8988402 4.260000e-163 584
5 TraesCS6A01G021800 chr6D 76.295 1004 195 34 1031 2017 8858407 8859384 2.060000e-136 496
6 TraesCS6A01G021800 chr6D 92.262 336 25 1 1025 1359 9798586 9798251 2.680000e-130 475
7 TraesCS6A01G021800 chr6D 75.337 965 208 27 1019 1969 8396948 8396000 1.260000e-118 436
8 TraesCS6A01G021800 chr6D 75.451 998 189 43 1037 2017 8480225 8479267 4.540000e-118 435
9 TraesCS6A01G021800 chr6B 89.400 717 35 7 1665 2361 17685694 17684999 0.000000e+00 865
10 TraesCS6A01G021800 chr6B 91.457 398 25 4 2526 2914 17674852 17674455 3.370000e-149 538
11 TraesCS6A01G021800 chr6B 83.423 555 91 1 1025 1578 17945296 17944742 5.670000e-142 514
12 TraesCS6A01G021800 chr6B 80.547 622 81 19 5 605 17723455 17722853 2.720000e-120 442
13 TraesCS6A01G021800 chr6B 74.667 975 227 19 1025 1987 13818699 13817733 5.920000e-112 414
14 TraesCS6A01G021800 chr6B 82.250 400 42 10 65 447 18023775 18024162 4.780000e-83 318
15 TraesCS6A01G021800 chr6B 95.783 166 4 3 2349 2511 17684356 17684191 6.310000e-67 265
16 TraesCS6A01G021800 chrUn 97.472 356 9 0 679 1034 30909969 30909614 2.530000e-170 608
17 TraesCS6A01G021800 chr7A 97.183 355 9 1 678 1032 710491401 710491048 1.520000e-167 599
18 TraesCS6A01G021800 chr7A 96.089 358 13 1 675 1032 707812341 707812697 1.530000e-162 582
19 TraesCS6A01G021800 chr7A 73.128 975 232 28 1019 1978 138351671 138350712 3.690000e-84 322
20 TraesCS6A01G021800 chr7A 80.829 193 18 9 232 411 700101566 700101380 1.860000e-27 134
21 TraesCS6A01G021800 chr4A 97.143 350 10 0 682 1031 690223177 690223526 2.550000e-165 592
22 TraesCS6A01G021800 chr1A 96.884 353 11 0 681 1033 276652235 276652587 2.550000e-165 592
23 TraesCS6A01G021800 chr1A 97.118 347 10 0 684 1030 476973288 476972942 1.190000e-163 586
24 TraesCS6A01G021800 chr1A 96.591 352 12 0 682 1033 431976212 431976563 4.260000e-163 584
25 TraesCS6A01G021800 chr1A 77.332 922 190 15 1037 1948 589248275 589247363 7.290000e-146 527
26 TraesCS6A01G021800 chr1A 74.557 959 217 17 1025 1969 573206336 573207281 7.710000e-106 394
27 TraesCS6A01G021800 chr1A 74.681 470 71 30 141 601 525018066 525017636 6.580000e-37 165
28 TraesCS6A01G021800 chr1A 73.824 489 71 34 106 582 523112281 523112724 1.110000e-29 141
29 TraesCS6A01G021800 chr5A 96.866 351 11 0 681 1031 45711865 45711515 3.300000e-164 588
30 TraesCS6A01G021800 chr5A 75.385 975 213 25 1019 1979 650824763 650825724 2.100000e-121 446
31 TraesCS6A01G021800 chr2B 96.857 350 10 1 684 1032 800099112 800099461 4.260000e-163 584
32 TraesCS6A01G021800 chr5D 75.481 987 210 30 1019 1989 524577737 524578707 1.250000e-123 453
33 TraesCS6A01G021800 chr5D 83.721 215 32 3 2717 2931 375968696 375968907 1.800000e-47 200
34 TraesCS6A01G021800 chr1D 76.705 777 165 9 1037 1810 491589537 491588774 4.580000e-113 418
35 TraesCS6A01G021800 chr1D 74.793 968 214 20 1025 1977 477165897 477166849 2.750000e-110 409
36 TraesCS6A01G021800 chr1D 75.573 524 78 33 1 515 99688390 99688872 2.320000e-51 213
37 TraesCS6A01G021800 chr7B 73.750 960 221 29 1019 1962 103619182 103618238 6.090000e-92 348
38 TraesCS6A01G021800 chr7D 73.438 960 224 29 1019 1962 138312010 138311066 6.130000e-87 331
39 TraesCS6A01G021800 chr3B 81.496 254 29 12 160 402 581332641 581332395 3.020000e-45 193
40 TraesCS6A01G021800 chr1B 80.392 204 20 12 233 421 86748030 86747832 1.440000e-28 137
41 TraesCS6A01G021800 chr4B 80.311 193 20 8 233 411 540316046 540316234 2.400000e-26 130
42 TraesCS6A01G021800 chr5B 79.793 193 20 8 233 410 356690262 356690074 4.020000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G021800 chr6A 10922513 10925481 2968 True 5483 5483 100.0000 1 2969 1 chr6A.!!$R1 2968
1 TraesCS6A01G021800 chr6A 7987004 7987948 944 False 433 433 75.1570 1025 1969 1 chr6A.!!$F1 944
2 TraesCS6A01G021800 chr6A 15893508 15894452 944 True 424 424 75.0780 1031 1977 1 chr6A.!!$R2 946
3 TraesCS6A01G021800 chr6D 9797071 9798586 1515 True 1044 1613 92.0140 1025 2969 2 chr6D.!!$R3 1944
4 TraesCS6A01G021800 chr6D 8987441 8988402 961 False 584 584 77.7430 1019 1979 1 chr6D.!!$F2 960
5 TraesCS6A01G021800 chr6D 8858407 8859384 977 False 496 496 76.2950 1031 2017 1 chr6D.!!$F1 986
6 TraesCS6A01G021800 chr6D 8396000 8396948 948 True 436 436 75.3370 1019 1969 1 chr6D.!!$R1 950
7 TraesCS6A01G021800 chr6D 8479267 8480225 958 True 435 435 75.4510 1037 2017 1 chr6D.!!$R2 980
8 TraesCS6A01G021800 chr6B 17684191 17685694 1503 True 565 865 92.5915 1665 2511 2 chr6B.!!$R5 846
9 TraesCS6A01G021800 chr6B 17944742 17945296 554 True 514 514 83.4230 1025 1578 1 chr6B.!!$R4 553
10 TraesCS6A01G021800 chr6B 17722853 17723455 602 True 442 442 80.5470 5 605 1 chr6B.!!$R3 600
11 TraesCS6A01G021800 chr6B 13817733 13818699 966 True 414 414 74.6670 1025 1987 1 chr6B.!!$R1 962
12 TraesCS6A01G021800 chr7A 138350712 138351671 959 True 322 322 73.1280 1019 1978 1 chr7A.!!$R1 959
13 TraesCS6A01G021800 chr1A 589247363 589248275 912 True 527 527 77.3320 1037 1948 1 chr1A.!!$R3 911
14 TraesCS6A01G021800 chr1A 573206336 573207281 945 False 394 394 74.5570 1025 1969 1 chr1A.!!$F4 944
15 TraesCS6A01G021800 chr5A 650824763 650825724 961 False 446 446 75.3850 1019 1979 1 chr5A.!!$F1 960
16 TraesCS6A01G021800 chr5D 524577737 524578707 970 False 453 453 75.4810 1019 1989 1 chr5D.!!$F2 970
17 TraesCS6A01G021800 chr1D 491588774 491589537 763 True 418 418 76.7050 1037 1810 1 chr1D.!!$R1 773
18 TraesCS6A01G021800 chr1D 477165897 477166849 952 False 409 409 74.7930 1025 1977 1 chr1D.!!$F2 952
19 TraesCS6A01G021800 chr7B 103618238 103619182 944 True 348 348 73.7500 1019 1962 1 chr7B.!!$R1 943
20 TraesCS6A01G021800 chr7D 138311066 138312010 944 True 331 331 73.4380 1019 1962 1 chr7D.!!$R1 943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 480 0.030638 GTTGTGTGTTGGCAAGCGAT 59.969 50.0 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 2267 1.063266 TCCATTGTGGCCCTAAATCCC 60.063 52.381 0.0 0.0 37.47 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 71 8.870160 ATTGAACTTTGTTTCAAAATCGATGA 57.130 26.923 0.00 0.00 46.06 2.92
55 72 8.694975 TTGAACTTTGTTTCAAAATCGATGAA 57.305 26.923 0.00 0.00 41.48 2.57
56 73 8.114359 TGAACTTTGTTTCAAAATCGATGAAC 57.886 30.769 0.00 0.66 36.57 3.18
57 74 7.221838 TGAACTTTGTTTCAAAATCGATGAACC 59.778 33.333 0.00 0.00 36.57 3.62
58 75 6.805713 ACTTTGTTTCAAAATCGATGAACCT 58.194 32.000 0.00 0.00 36.57 3.50
59 76 7.264947 ACTTTGTTTCAAAATCGATGAACCTT 58.735 30.769 0.00 0.00 36.57 3.50
60 77 7.435192 ACTTTGTTTCAAAATCGATGAACCTTC 59.565 33.333 0.00 0.00 36.57 3.46
61 78 6.633500 TGTTTCAAAATCGATGAACCTTCT 57.367 33.333 0.00 0.00 36.57 2.85
62 79 7.038154 TGTTTCAAAATCGATGAACCTTCTT 57.962 32.000 0.00 0.00 36.57 2.52
63 80 6.917477 TGTTTCAAAATCGATGAACCTTCTTG 59.083 34.615 0.00 0.00 36.57 3.02
64 81 6.875948 TTCAAAATCGATGAACCTTCTTGA 57.124 33.333 0.00 0.00 32.10 3.02
65 82 6.875948 TCAAAATCGATGAACCTTCTTGAA 57.124 33.333 0.00 0.00 0.00 2.69
66 83 7.270757 TCAAAATCGATGAACCTTCTTGAAA 57.729 32.000 0.00 0.00 0.00 2.69
67 84 7.885297 TCAAAATCGATGAACCTTCTTGAAAT 58.115 30.769 0.00 0.00 0.00 2.17
68 85 9.008965 TCAAAATCGATGAACCTTCTTGAAATA 57.991 29.630 0.00 0.00 0.00 1.40
69 86 9.282247 CAAAATCGATGAACCTTCTTGAAATAG 57.718 33.333 0.00 0.00 0.00 1.73
70 87 8.792830 AAATCGATGAACCTTCTTGAAATAGA 57.207 30.769 0.00 0.00 0.00 1.98
71 88 8.970859 AATCGATGAACCTTCTTGAAATAGAT 57.029 30.769 0.00 0.00 0.00 1.98
72 89 7.776933 TCGATGAACCTTCTTGAAATAGATG 57.223 36.000 0.00 0.00 0.00 2.90
211 228 8.839310 TTTCAAAACATTGAACTTTTTCTCCA 57.161 26.923 3.64 0.00 40.29 3.86
213 230 8.839310 TCAAAACATTGAACTTTTTCTCCAAA 57.161 26.923 0.00 0.00 32.36 3.28
218 235 6.701400 ACATTGAACTTTTTCTCCAAAATCCG 59.299 34.615 0.00 0.00 33.73 4.18
219 236 5.845391 TGAACTTTTTCTCCAAAATCCGT 57.155 34.783 0.00 0.00 33.73 4.69
220 237 6.945938 TGAACTTTTTCTCCAAAATCCGTA 57.054 33.333 0.00 0.00 33.73 4.02
224 241 7.997107 ACTTTTTCTCCAAAATCCGTAAAAC 57.003 32.000 0.00 0.00 33.73 2.43
227 244 8.950208 TTTTTCTCCAAAATCCGTAAAACAAT 57.050 26.923 0.00 0.00 31.39 2.71
230 247 6.683715 TCTCCAAAATCCGTAAAACAATTCC 58.316 36.000 0.00 0.00 0.00 3.01
265 282 9.701355 GGTAGTTTTCAATTTGTGAACATTTTG 57.299 29.630 15.01 0.00 46.09 2.44
278 295 5.512788 GTGAACATTTTGCATATCCGTGAAG 59.487 40.000 0.00 0.00 0.00 3.02
356 387 7.326789 GTCAAACATGTCAATGGTCAACTTATG 59.673 37.037 0.00 0.00 38.19 1.90
357 388 5.902613 ACATGTCAATGGTCAACTTATGG 57.097 39.130 0.00 0.00 38.19 2.74
380 411 4.557496 GCCTGTTCAACCATGAAGAAGTTC 60.557 45.833 0.00 0.00 45.88 3.01
383 414 6.486657 CCTGTTCAACCATGAAGAAGTTCTTA 59.513 38.462 18.03 7.52 45.88 2.10
414 445 0.302890 CCACGAAGATGCGATCAAGC 59.697 55.000 0.00 0.00 37.71 4.01
415 446 0.043566 CACGAAGATGCGATCAAGCG 60.044 55.000 0.00 0.00 40.67 4.68
416 447 0.179137 ACGAAGATGCGATCAAGCGA 60.179 50.000 0.00 0.00 40.67 4.93
417 448 1.135046 CGAAGATGCGATCAAGCGAT 58.865 50.000 0.00 0.00 40.67 4.58
418 449 1.123936 CGAAGATGCGATCAAGCGATC 59.876 52.381 0.00 0.00 44.04 3.69
434 465 2.285220 GCGATCAAGCGTATGATGTTGT 59.715 45.455 9.37 0.00 40.08 3.32
447 478 0.248990 ATGTTGTGTGTTGGCAAGCG 60.249 50.000 0.00 0.00 0.00 4.68
449 480 0.030638 GTTGTGTGTTGGCAAGCGAT 59.969 50.000 0.00 0.00 0.00 4.58
471 502 1.933853 GCTAGTCGCTGGTGTATTTGG 59.066 52.381 0.00 0.00 35.14 3.28
472 503 2.550978 CTAGTCGCTGGTGTATTTGGG 58.449 52.381 0.00 0.00 0.00 4.12
473 504 0.676782 AGTCGCTGGTGTATTTGGGC 60.677 55.000 0.00 0.00 0.00 5.36
474 505 0.676782 GTCGCTGGTGTATTTGGGCT 60.677 55.000 0.00 0.00 0.00 5.19
475 506 0.676466 TCGCTGGTGTATTTGGGCTG 60.676 55.000 0.00 0.00 0.00 4.85
476 507 1.656818 CGCTGGTGTATTTGGGCTGG 61.657 60.000 0.00 0.00 0.00 4.85
477 508 1.948721 GCTGGTGTATTTGGGCTGGC 61.949 60.000 0.00 0.00 0.00 4.85
478 509 1.304879 TGGTGTATTTGGGCTGGCC 60.305 57.895 14.23 14.23 0.00 5.36
488 519 2.037847 GGCTGGCCCATGAAAGGT 59.962 61.111 0.00 0.00 0.00 3.50
489 520 2.353610 GGCTGGCCCATGAAAGGTG 61.354 63.158 0.00 0.00 0.00 4.00
490 521 2.353610 GCTGGCCCATGAAAGGTGG 61.354 63.158 0.00 0.00 36.47 4.61
491 522 1.077265 CTGGCCCATGAAAGGTGGT 59.923 57.895 0.00 0.00 34.87 4.16
492 523 1.228831 TGGCCCATGAAAGGTGGTG 60.229 57.895 0.00 0.00 34.87 4.17
493 524 1.228862 GGCCCATGAAAGGTGGTGT 60.229 57.895 0.00 0.00 34.87 4.16
494 525 1.535204 GGCCCATGAAAGGTGGTGTG 61.535 60.000 0.00 0.00 34.87 3.82
495 526 1.535204 GCCCATGAAAGGTGGTGTGG 61.535 60.000 0.00 0.00 34.87 4.17
496 527 0.899717 CCCATGAAAGGTGGTGTGGG 60.900 60.000 0.00 0.00 40.22 4.61
497 528 0.112218 CCATGAAAGGTGGTGTGGGA 59.888 55.000 0.00 0.00 31.96 4.37
498 529 1.538047 CATGAAAGGTGGTGTGGGAG 58.462 55.000 0.00 0.00 0.00 4.30
499 530 1.149101 ATGAAAGGTGGTGTGGGAGT 58.851 50.000 0.00 0.00 0.00 3.85
500 531 1.809133 TGAAAGGTGGTGTGGGAGTA 58.191 50.000 0.00 0.00 0.00 2.59
501 532 2.344592 TGAAAGGTGGTGTGGGAGTAT 58.655 47.619 0.00 0.00 0.00 2.12
502 533 2.714250 TGAAAGGTGGTGTGGGAGTATT 59.286 45.455 0.00 0.00 0.00 1.89
503 534 2.879103 AAGGTGGTGTGGGAGTATTG 57.121 50.000 0.00 0.00 0.00 1.90
504 535 0.328258 AGGTGGTGTGGGAGTATTGC 59.672 55.000 0.00 0.00 0.00 3.56
505 536 1.024579 GGTGGTGTGGGAGTATTGCG 61.025 60.000 0.00 0.00 0.00 4.85
506 537 1.376683 TGGTGTGGGAGTATTGCGC 60.377 57.895 0.00 0.00 0.00 6.09
507 538 2.112815 GGTGTGGGAGTATTGCGCC 61.113 63.158 4.18 0.00 36.22 6.53
512 543 2.420043 GGAGTATTGCGCCCGCTA 59.580 61.111 14.13 6.75 42.51 4.26
513 544 1.227438 GGAGTATTGCGCCCGCTAA 60.227 57.895 14.13 7.05 42.51 3.09
514 545 1.496403 GGAGTATTGCGCCCGCTAAC 61.496 60.000 14.13 8.92 42.51 2.34
515 546 0.808453 GAGTATTGCGCCCGCTAACA 60.808 55.000 14.13 0.00 42.51 2.41
516 547 0.391927 AGTATTGCGCCCGCTAACAA 60.392 50.000 14.13 0.00 42.51 2.83
517 548 0.448593 GTATTGCGCCCGCTAACAAA 59.551 50.000 14.13 0.00 42.51 2.83
518 549 1.135632 GTATTGCGCCCGCTAACAAAA 60.136 47.619 14.13 0.00 42.51 2.44
519 550 0.315568 ATTGCGCCCGCTAACAAAAA 59.684 45.000 14.13 0.00 42.51 1.94
538 569 4.568152 AAAAACTAGCGCAACAAGTGAT 57.432 36.364 11.47 0.00 0.00 3.06
539 570 3.542712 AAACTAGCGCAACAAGTGATG 57.457 42.857 11.47 0.00 0.00 3.07
540 571 2.455674 ACTAGCGCAACAAGTGATGA 57.544 45.000 11.47 0.00 0.00 2.92
541 572 2.069273 ACTAGCGCAACAAGTGATGAC 58.931 47.619 11.47 0.00 0.00 3.06
542 573 2.289072 ACTAGCGCAACAAGTGATGACT 60.289 45.455 11.47 0.00 0.00 3.41
543 574 2.455674 AGCGCAACAAGTGATGACTA 57.544 45.000 11.47 0.00 0.00 2.59
544 575 2.341257 AGCGCAACAAGTGATGACTAG 58.659 47.619 11.47 0.00 0.00 2.57
545 576 2.029020 AGCGCAACAAGTGATGACTAGA 60.029 45.455 11.47 0.00 0.00 2.43
546 577 2.736721 GCGCAACAAGTGATGACTAGAA 59.263 45.455 0.30 0.00 0.00 2.10
547 578 3.181526 GCGCAACAAGTGATGACTAGAAG 60.182 47.826 0.30 0.00 0.00 2.85
548 579 3.369147 CGCAACAAGTGATGACTAGAAGG 59.631 47.826 0.00 0.00 0.00 3.46
549 580 4.319177 GCAACAAGTGATGACTAGAAGGT 58.681 43.478 0.00 0.00 0.00 3.50
550 581 4.390297 GCAACAAGTGATGACTAGAAGGTC 59.610 45.833 0.00 0.00 36.81 3.85
551 582 4.810191 ACAAGTGATGACTAGAAGGTCC 57.190 45.455 0.00 0.00 35.54 4.46
552 583 3.515901 ACAAGTGATGACTAGAAGGTCCC 59.484 47.826 0.00 0.00 35.54 4.46
553 584 2.379972 AGTGATGACTAGAAGGTCCCG 58.620 52.381 0.00 0.00 35.54 5.14
554 585 2.025226 AGTGATGACTAGAAGGTCCCGA 60.025 50.000 0.00 0.00 35.54 5.14
555 586 2.959707 GTGATGACTAGAAGGTCCCGAT 59.040 50.000 0.00 0.00 35.54 4.18
556 587 2.959030 TGATGACTAGAAGGTCCCGATG 59.041 50.000 0.00 0.00 35.54 3.84
557 588 2.526888 TGACTAGAAGGTCCCGATGT 57.473 50.000 0.00 0.00 35.54 3.06
558 589 3.657398 TGACTAGAAGGTCCCGATGTA 57.343 47.619 0.00 0.00 35.54 2.29
559 590 3.285484 TGACTAGAAGGTCCCGATGTAC 58.715 50.000 0.00 0.00 35.54 2.90
560 591 3.285484 GACTAGAAGGTCCCGATGTACA 58.715 50.000 0.00 0.00 0.00 2.90
561 592 3.698040 GACTAGAAGGTCCCGATGTACAA 59.302 47.826 0.00 0.00 0.00 2.41
562 593 3.700038 ACTAGAAGGTCCCGATGTACAAG 59.300 47.826 0.00 0.00 0.00 3.16
563 594 1.831736 AGAAGGTCCCGATGTACAAGG 59.168 52.381 12.36 12.36 0.00 3.61
564 595 1.829222 GAAGGTCCCGATGTACAAGGA 59.171 52.381 18.91 13.70 0.00 3.36
565 596 1.486211 AGGTCCCGATGTACAAGGAG 58.514 55.000 18.91 10.90 0.00 3.69
566 597 1.192428 GGTCCCGATGTACAAGGAGT 58.808 55.000 18.91 0.00 0.00 3.85
567 598 2.024655 AGGTCCCGATGTACAAGGAGTA 60.025 50.000 18.91 4.87 0.00 2.59
568 599 2.361438 GGTCCCGATGTACAAGGAGTAG 59.639 54.545 18.91 5.64 32.19 2.57
569 600 2.029623 TCCCGATGTACAAGGAGTAGC 58.970 52.381 18.91 0.00 32.19 3.58
570 601 1.754803 CCCGATGTACAAGGAGTAGCA 59.245 52.381 18.91 0.00 32.19 3.49
571 602 2.365617 CCCGATGTACAAGGAGTAGCAT 59.634 50.000 18.91 0.00 32.19 3.79
572 603 3.553096 CCCGATGTACAAGGAGTAGCATC 60.553 52.174 18.91 0.00 37.59 3.91
573 604 3.068165 CCGATGTACAAGGAGTAGCATCA 59.932 47.826 13.69 0.00 39.06 3.07
574 605 4.045104 CGATGTACAAGGAGTAGCATCAC 58.955 47.826 0.00 0.00 39.06 3.06
575 606 4.440112 CGATGTACAAGGAGTAGCATCACA 60.440 45.833 0.00 0.00 39.06 3.58
576 607 4.188247 TGTACAAGGAGTAGCATCACAC 57.812 45.455 0.00 0.00 32.19 3.82
577 608 3.576550 TGTACAAGGAGTAGCATCACACA 59.423 43.478 0.00 0.00 32.19 3.72
578 609 3.769739 ACAAGGAGTAGCATCACACAA 57.230 42.857 0.00 0.00 0.00 3.33
579 610 4.085357 ACAAGGAGTAGCATCACACAAA 57.915 40.909 0.00 0.00 0.00 2.83
580 611 3.815401 ACAAGGAGTAGCATCACACAAAC 59.185 43.478 0.00 0.00 0.00 2.93
581 612 3.059352 AGGAGTAGCATCACACAAACC 57.941 47.619 0.00 0.00 0.00 3.27
582 613 2.371841 AGGAGTAGCATCACACAAACCA 59.628 45.455 0.00 0.00 0.00 3.67
583 614 3.146066 GGAGTAGCATCACACAAACCAA 58.854 45.455 0.00 0.00 0.00 3.67
584 615 3.568007 GGAGTAGCATCACACAAACCAAA 59.432 43.478 0.00 0.00 0.00 3.28
585 616 4.320494 GGAGTAGCATCACACAAACCAAAG 60.320 45.833 0.00 0.00 0.00 2.77
586 617 2.514205 AGCATCACACAAACCAAAGC 57.486 45.000 0.00 0.00 0.00 3.51
587 618 1.069049 AGCATCACACAAACCAAAGCC 59.931 47.619 0.00 0.00 0.00 4.35
588 619 1.769733 CATCACACAAACCAAAGCCG 58.230 50.000 0.00 0.00 0.00 5.52
589 620 1.336440 CATCACACAAACCAAAGCCGA 59.664 47.619 0.00 0.00 0.00 5.54
590 621 0.736053 TCACACAAACCAAAGCCGAC 59.264 50.000 0.00 0.00 0.00 4.79
591 622 0.453793 CACACAAACCAAAGCCGACA 59.546 50.000 0.00 0.00 0.00 4.35
592 623 0.454196 ACACAAACCAAAGCCGACAC 59.546 50.000 0.00 0.00 0.00 3.67
593 624 0.248866 CACAAACCAAAGCCGACACC 60.249 55.000 0.00 0.00 0.00 4.16
594 625 1.362355 CAAACCAAAGCCGACACCC 59.638 57.895 0.00 0.00 0.00 4.61
595 626 1.830847 AAACCAAAGCCGACACCCC 60.831 57.895 0.00 0.00 0.00 4.95
596 627 2.292785 AAACCAAAGCCGACACCCCT 62.293 55.000 0.00 0.00 0.00 4.79
597 628 1.420532 AACCAAAGCCGACACCCCTA 61.421 55.000 0.00 0.00 0.00 3.53
598 629 1.376812 CCAAAGCCGACACCCCTAC 60.377 63.158 0.00 0.00 0.00 3.18
599 630 1.740296 CAAAGCCGACACCCCTACG 60.740 63.158 0.00 0.00 0.00 3.51
600 631 2.212110 AAAGCCGACACCCCTACGT 61.212 57.895 0.00 0.00 0.00 3.57
601 632 2.444700 AAAGCCGACACCCCTACGTG 62.445 60.000 0.00 0.00 39.75 4.49
603 634 2.260434 CCGACACCCCTACGTGTG 59.740 66.667 0.00 0.00 46.85 3.82
604 635 2.260434 CGACACCCCTACGTGTGG 59.740 66.667 0.00 0.00 46.85 4.17
605 636 2.270257 CGACACCCCTACGTGTGGA 61.270 63.158 10.46 0.00 46.85 4.02
606 637 1.808531 CGACACCCCTACGTGTGGAA 61.809 60.000 10.46 0.00 46.85 3.53
607 638 0.037605 GACACCCCTACGTGTGGAAG 60.038 60.000 10.46 4.91 46.85 3.46
608 639 0.761702 ACACCCCTACGTGTGGAAGT 60.762 55.000 10.46 5.44 45.19 3.01
609 640 0.320421 CACCCCTACGTGTGGAAGTG 60.320 60.000 10.46 12.30 0.00 3.16
610 641 0.761702 ACCCCTACGTGTGGAAGTGT 60.762 55.000 10.46 0.00 0.00 3.55
611 642 0.395312 CCCCTACGTGTGGAAGTGTT 59.605 55.000 10.46 0.00 0.00 3.32
612 643 1.508632 CCCTACGTGTGGAAGTGTTG 58.491 55.000 10.46 0.00 0.00 3.33
613 644 0.865769 CCTACGTGTGGAAGTGTTGC 59.134 55.000 0.00 0.00 0.00 4.17
614 645 0.506932 CTACGTGTGGAAGTGTTGCG 59.493 55.000 0.00 0.00 0.00 4.85
615 646 1.492319 TACGTGTGGAAGTGTTGCGC 61.492 55.000 0.00 0.00 0.00 6.09
616 647 2.331451 GTGTGGAAGTGTTGCGCC 59.669 61.111 4.18 0.00 0.00 6.53
617 648 2.904866 TGTGGAAGTGTTGCGCCC 60.905 61.111 4.18 0.00 0.00 6.13
618 649 4.025401 GTGGAAGTGTTGCGCCCG 62.025 66.667 4.18 0.00 0.00 6.13
621 652 2.740826 GAAGTGTTGCGCCCGCTA 60.741 61.111 14.13 3.25 42.51 4.26
622 653 2.281208 AAGTGTTGCGCCCGCTAA 60.281 55.556 14.13 4.11 42.51 3.09
623 654 2.508755 GAAGTGTTGCGCCCGCTAAC 62.509 60.000 14.13 15.11 42.51 2.34
624 655 3.350612 GTGTTGCGCCCGCTAACA 61.351 61.111 19.06 19.06 42.51 2.41
625 656 2.592001 TGTTGCGCCCGCTAACAA 60.592 55.556 20.00 4.27 42.51 2.83
626 657 2.187493 TGTTGCGCCCGCTAACAAA 61.187 52.632 20.00 3.97 42.51 2.83
627 658 1.008309 GTTGCGCCCGCTAACAAAA 60.008 52.632 14.13 0.00 42.51 2.44
628 659 0.595310 GTTGCGCCCGCTAACAAAAA 60.595 50.000 14.13 0.00 42.51 1.94
646 677 2.774439 AAAAACTAGCGCAACCAGTG 57.226 45.000 11.47 0.00 0.00 3.66
656 687 3.305709 CAACCAGTGCCTCGAGAAA 57.694 52.632 15.71 0.00 0.00 2.52
657 688 1.151668 CAACCAGTGCCTCGAGAAAG 58.848 55.000 15.71 0.00 0.00 2.62
658 689 0.603975 AACCAGTGCCTCGAGAAAGC 60.604 55.000 15.71 9.75 0.00 3.51
659 690 1.294780 CCAGTGCCTCGAGAAAGCT 59.705 57.895 15.71 3.48 0.00 3.74
660 691 0.739112 CCAGTGCCTCGAGAAAGCTC 60.739 60.000 15.71 9.92 37.81 4.09
661 692 0.246086 CAGTGCCTCGAGAAAGCTCT 59.754 55.000 15.71 12.12 39.06 4.09
662 693 0.530288 AGTGCCTCGAGAAAGCTCTC 59.470 55.000 15.71 4.55 44.17 3.20
663 694 0.459411 GTGCCTCGAGAAAGCTCTCC 60.459 60.000 15.71 0.00 44.70 3.71
664 695 1.142965 GCCTCGAGAAAGCTCTCCC 59.857 63.158 15.71 0.00 44.70 4.30
665 696 1.608717 GCCTCGAGAAAGCTCTCCCA 61.609 60.000 15.71 0.00 44.70 4.37
666 697 1.118838 CCTCGAGAAAGCTCTCCCAT 58.881 55.000 15.71 0.00 44.70 4.00
667 698 1.068434 CCTCGAGAAAGCTCTCCCATC 59.932 57.143 15.71 0.00 44.70 3.51
668 699 2.031120 CTCGAGAAAGCTCTCCCATCT 58.969 52.381 6.58 0.00 44.70 2.90
669 700 1.753649 TCGAGAAAGCTCTCCCATCTG 59.246 52.381 0.00 0.00 44.70 2.90
670 701 1.753649 CGAGAAAGCTCTCCCATCTGA 59.246 52.381 0.00 0.00 44.70 3.27
671 702 2.167281 CGAGAAAGCTCTCCCATCTGAA 59.833 50.000 0.00 0.00 44.70 3.02
672 703 3.368843 CGAGAAAGCTCTCCCATCTGAAA 60.369 47.826 0.00 0.00 44.70 2.69
673 704 4.682859 CGAGAAAGCTCTCCCATCTGAAAT 60.683 45.833 0.00 0.00 44.70 2.17
674 705 4.779696 AGAAAGCTCTCCCATCTGAAATC 58.220 43.478 0.00 0.00 0.00 2.17
675 706 3.574354 AAGCTCTCCCATCTGAAATCC 57.426 47.619 0.00 0.00 0.00 3.01
676 707 1.773653 AGCTCTCCCATCTGAAATCCC 59.226 52.381 0.00 0.00 0.00 3.85
677 708 1.202867 GCTCTCCCATCTGAAATCCCC 60.203 57.143 0.00 0.00 0.00 4.81
678 709 2.130193 CTCTCCCATCTGAAATCCCCA 58.870 52.381 0.00 0.00 0.00 4.96
679 710 2.715336 CTCTCCCATCTGAAATCCCCAT 59.285 50.000 0.00 0.00 0.00 4.00
680 711 2.713167 TCTCCCATCTGAAATCCCCATC 59.287 50.000 0.00 0.00 0.00 3.51
681 712 2.715336 CTCCCATCTGAAATCCCCATCT 59.285 50.000 0.00 0.00 0.00 2.90
682 713 3.912528 CTCCCATCTGAAATCCCCATCTA 59.087 47.826 0.00 0.00 0.00 1.98
683 714 4.315115 TCCCATCTGAAATCCCCATCTAA 58.685 43.478 0.00 0.00 0.00 2.10
684 715 4.352001 TCCCATCTGAAATCCCCATCTAAG 59.648 45.833 0.00 0.00 0.00 2.18
685 716 4.352001 CCCATCTGAAATCCCCATCTAAGA 59.648 45.833 0.00 0.00 0.00 2.10
686 717 5.514484 CCCATCTGAAATCCCCATCTAAGAG 60.514 48.000 0.00 0.00 0.00 2.85
687 718 5.514484 CCATCTGAAATCCCCATCTAAGAGG 60.514 48.000 0.00 0.00 0.00 3.69
688 719 3.976654 TCTGAAATCCCCATCTAAGAGGG 59.023 47.826 0.00 0.00 45.04 4.30
689 720 3.718956 CTGAAATCCCCATCTAAGAGGGT 59.281 47.826 1.12 0.00 43.89 4.34
690 721 3.459598 TGAAATCCCCATCTAAGAGGGTG 59.540 47.826 1.12 0.00 43.89 4.61
691 722 1.439543 ATCCCCATCTAAGAGGGTGC 58.560 55.000 1.12 0.00 43.89 5.01
692 723 0.343372 TCCCCATCTAAGAGGGTGCT 59.657 55.000 1.12 0.00 43.89 4.40
693 724 1.216990 CCCCATCTAAGAGGGTGCTT 58.783 55.000 1.12 0.00 43.89 3.91
694 725 1.133976 CCCCATCTAAGAGGGTGCTTG 60.134 57.143 1.12 0.00 43.89 4.01
695 726 1.133976 CCCATCTAAGAGGGTGCTTGG 60.134 57.143 0.00 0.00 40.34 3.61
696 727 1.839994 CCATCTAAGAGGGTGCTTGGA 59.160 52.381 0.00 0.00 39.27 3.53
697 728 2.441001 CCATCTAAGAGGGTGCTTGGAT 59.559 50.000 0.00 0.00 43.95 3.41
698 729 3.117738 CCATCTAAGAGGGTGCTTGGATT 60.118 47.826 0.00 0.00 41.49 3.01
699 730 3.914426 TCTAAGAGGGTGCTTGGATTC 57.086 47.619 0.00 0.00 31.53 2.52
700 731 3.181329 TCTAAGAGGGTGCTTGGATTCA 58.819 45.455 0.00 0.00 31.53 2.57
701 732 2.978156 AAGAGGGTGCTTGGATTCAA 57.022 45.000 0.00 0.00 0.00 2.69
716 747 8.581253 CTTGGATTCAAGGGACTATTTTTAGT 57.419 34.615 5.76 0.00 44.89 2.24
717 748 8.575649 TTGGATTCAAGGGACTATTTTTAGTC 57.424 34.615 4.87 4.87 44.23 2.59
718 749 7.928873 TGGATTCAAGGGACTATTTTTAGTCT 58.071 34.615 11.69 0.00 44.35 3.24
719 750 7.829211 TGGATTCAAGGGACTATTTTTAGTCTG 59.171 37.037 11.69 4.52 44.35 3.51
720 751 8.047310 GGATTCAAGGGACTATTTTTAGTCTGA 58.953 37.037 11.69 6.38 44.35 3.27
721 752 8.794335 ATTCAAGGGACTATTTTTAGTCTGAC 57.206 34.615 11.69 0.00 44.35 3.51
722 753 7.554959 TCAAGGGACTATTTTTAGTCTGACT 57.445 36.000 15.57 15.57 44.35 3.41
723 754 8.660295 TCAAGGGACTATTTTTAGTCTGACTA 57.340 34.615 13.34 13.34 44.35 2.59
724 755 9.096823 TCAAGGGACTATTTTTAGTCTGACTAA 57.903 33.333 22.80 22.80 44.35 2.24
725 756 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
744 775 9.654663 TGACTAAAAATAGTCTCTTTTAGAGGC 57.345 33.333 22.30 14.20 46.94 4.70
753 784 6.971527 GTCTCTTTTAGAGGCTAAAGTTCC 57.028 41.667 7.84 0.00 43.38 3.62
754 785 6.465084 GTCTCTTTTAGAGGCTAAAGTTCCA 58.535 40.000 7.84 0.00 43.38 3.53
755 786 6.935208 GTCTCTTTTAGAGGCTAAAGTTCCAA 59.065 38.462 7.84 0.00 43.38 3.53
756 787 7.118535 GTCTCTTTTAGAGGCTAAAGTTCCAAG 59.881 40.741 7.84 0.00 43.38 3.61
757 788 5.705905 TCTTTTAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 33.97 4.01
758 789 4.634012 TTAGAGGCTAAAGTTCCAAGCA 57.366 40.909 0.00 0.00 38.01 3.91
759 790 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
760 791 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
761 792 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
762 793 1.547901 GGCTAAAGTTCCAAGCACCCT 60.548 52.381 7.02 0.00 38.01 4.34
763 794 2.239400 GCTAAAGTTCCAAGCACCCTT 58.761 47.619 0.00 0.00 36.26 3.95
764 795 2.029918 GCTAAAGTTCCAAGCACCCTTG 60.030 50.000 0.00 0.00 46.38 3.61
775 806 3.971245 AGCACCCTTGACTAAAGAGAG 57.029 47.619 0.00 0.00 38.24 3.20
776 807 2.569404 AGCACCCTTGACTAAAGAGAGG 59.431 50.000 0.00 0.00 38.24 3.69
777 808 2.937433 GCACCCTTGACTAAAGAGAGGC 60.937 54.545 0.00 0.00 38.24 4.70
778 809 2.569404 CACCCTTGACTAAAGAGAGGCT 59.431 50.000 0.00 0.00 38.24 4.58
779 810 3.769844 CACCCTTGACTAAAGAGAGGCTA 59.230 47.826 0.00 0.00 38.24 3.93
780 811 4.027437 ACCCTTGACTAAAGAGAGGCTAG 58.973 47.826 0.00 0.00 38.24 3.42
781 812 3.386402 CCCTTGACTAAAGAGAGGCTAGG 59.614 52.174 0.28 0.28 44.55 3.02
783 814 5.257082 CTTGACTAAAGAGAGGCTAGGAC 57.743 47.826 0.00 0.00 38.24 3.85
784 815 4.594675 TGACTAAAGAGAGGCTAGGACT 57.405 45.455 0.00 0.00 0.00 3.85
785 816 5.712084 TGACTAAAGAGAGGCTAGGACTA 57.288 43.478 0.00 0.00 0.00 2.59
786 817 5.686753 TGACTAAAGAGAGGCTAGGACTAG 58.313 45.833 1.98 1.98 36.29 2.57
787 818 5.192121 TGACTAAAGAGAGGCTAGGACTAGT 59.808 44.000 0.00 0.00 35.65 2.57
788 819 5.687780 ACTAAAGAGAGGCTAGGACTAGTC 58.312 45.833 14.87 14.87 38.03 2.59
794 825 3.306472 AGGCTAGGACTAGTCTTGAGG 57.694 52.381 21.88 10.56 45.03 3.86
795 826 1.684450 GGCTAGGACTAGTCTTGAGGC 59.316 57.143 21.88 21.38 35.06 4.70
796 827 2.661718 GCTAGGACTAGTCTTGAGGCT 58.338 52.381 21.88 11.79 35.65 4.58
797 828 3.435313 GGCTAGGACTAGTCTTGAGGCTA 60.435 52.174 24.87 16.06 35.06 3.93
798 829 4.208746 GCTAGGACTAGTCTTGAGGCTAA 58.791 47.826 21.88 0.00 35.65 3.09
799 830 4.645588 GCTAGGACTAGTCTTGAGGCTAAA 59.354 45.833 21.88 0.00 35.65 1.85
800 831 5.127356 GCTAGGACTAGTCTTGAGGCTAAAA 59.873 44.000 21.88 0.00 35.65 1.52
801 832 6.351117 GCTAGGACTAGTCTTGAGGCTAAAAA 60.351 42.308 21.88 0.00 35.65 1.94
802 833 5.795972 AGGACTAGTCTTGAGGCTAAAAAC 58.204 41.667 21.88 0.73 0.00 2.43
803 834 5.544562 AGGACTAGTCTTGAGGCTAAAAACT 59.455 40.000 21.88 0.00 0.00 2.66
804 835 6.043358 AGGACTAGTCTTGAGGCTAAAAACTT 59.957 38.462 21.88 0.00 0.00 2.66
805 836 6.711194 GGACTAGTCTTGAGGCTAAAAACTTT 59.289 38.462 21.88 0.00 0.00 2.66
806 837 7.228906 GGACTAGTCTTGAGGCTAAAAACTTTT 59.771 37.037 21.88 0.00 0.00 2.27
807 838 9.269453 GACTAGTCTTGAGGCTAAAAACTTTTA 57.731 33.333 15.91 0.00 0.00 1.52
844 875 9.617053 ACCTACTAAAATATGTATTAGCCCTCT 57.383 33.333 0.00 0.00 33.39 3.69
848 879 9.608718 ACTAAAATATGTATTAGCCCTCTCTCT 57.391 33.333 0.00 0.00 33.39 3.10
850 881 7.489239 AAATATGTATTAGCCCTCTCTCTCC 57.511 40.000 0.00 0.00 0.00 3.71
851 882 4.757997 ATGTATTAGCCCTCTCTCTCCT 57.242 45.455 0.00 0.00 0.00 3.69
852 883 4.107127 TGTATTAGCCCTCTCTCTCCTC 57.893 50.000 0.00 0.00 0.00 3.71
853 884 3.463704 TGTATTAGCCCTCTCTCTCCTCA 59.536 47.826 0.00 0.00 0.00 3.86
854 885 3.921287 ATTAGCCCTCTCTCTCCTCAT 57.079 47.619 0.00 0.00 0.00 2.90
855 886 3.697190 TTAGCCCTCTCTCTCCTCATT 57.303 47.619 0.00 0.00 0.00 2.57
856 887 2.566708 AGCCCTCTCTCTCCTCATTT 57.433 50.000 0.00 0.00 0.00 2.32
857 888 3.697190 AGCCCTCTCTCTCCTCATTTA 57.303 47.619 0.00 0.00 0.00 1.40
858 889 4.000928 AGCCCTCTCTCTCCTCATTTAA 57.999 45.455 0.00 0.00 0.00 1.52
859 890 4.565817 AGCCCTCTCTCTCCTCATTTAAT 58.434 43.478 0.00 0.00 0.00 1.40
860 891 4.974501 AGCCCTCTCTCTCCTCATTTAATT 59.025 41.667 0.00 0.00 0.00 1.40
861 892 5.071653 AGCCCTCTCTCTCCTCATTTAATTC 59.928 44.000 0.00 0.00 0.00 2.17
862 893 5.744594 GCCCTCTCTCTCCTCATTTAATTCC 60.745 48.000 0.00 0.00 0.00 3.01
863 894 5.606329 CCCTCTCTCTCCTCATTTAATTCCT 59.394 44.000 0.00 0.00 0.00 3.36
864 895 6.239572 CCCTCTCTCTCCTCATTTAATTCCTC 60.240 46.154 0.00 0.00 0.00 3.71
865 896 6.554605 CCTCTCTCTCCTCATTTAATTCCTCT 59.445 42.308 0.00 0.00 0.00 3.69
866 897 7.728083 CCTCTCTCTCCTCATTTAATTCCTCTA 59.272 40.741 0.00 0.00 0.00 2.43
867 898 9.312904 CTCTCTCTCCTCATTTAATTCCTCTAT 57.687 37.037 0.00 0.00 0.00 1.98
868 899 9.667607 TCTCTCTCCTCATTTAATTCCTCTATT 57.332 33.333 0.00 0.00 0.00 1.73
880 911 9.781834 TTTAATTCCTCTATTTTAACACATGCG 57.218 29.630 0.00 0.00 0.00 4.73
881 912 7.624360 AATTCCTCTATTTTAACACATGCGA 57.376 32.000 0.00 0.00 0.00 5.10
882 913 6.662414 TTCCTCTATTTTAACACATGCGAG 57.338 37.500 0.00 0.00 0.00 5.03
883 914 5.730550 TCCTCTATTTTAACACATGCGAGT 58.269 37.500 0.00 0.00 0.00 4.18
884 915 6.170506 TCCTCTATTTTAACACATGCGAGTT 58.829 36.000 0.00 0.00 0.00 3.01
885 916 6.312918 TCCTCTATTTTAACACATGCGAGTTC 59.687 38.462 0.00 0.00 0.00 3.01
886 917 6.313905 CCTCTATTTTAACACATGCGAGTTCT 59.686 38.462 0.00 0.00 0.00 3.01
887 918 7.060600 TCTATTTTAACACATGCGAGTTCTG 57.939 36.000 0.00 0.00 0.00 3.02
888 919 4.481930 TTTTAACACATGCGAGTTCTGG 57.518 40.909 0.00 0.00 0.00 3.86
889 920 3.394674 TTAACACATGCGAGTTCTGGA 57.605 42.857 0.00 0.00 0.00 3.86
890 921 2.479566 AACACATGCGAGTTCTGGAT 57.520 45.000 0.00 0.00 0.00 3.41
891 922 2.479566 ACACATGCGAGTTCTGGATT 57.520 45.000 0.00 0.00 0.00 3.01
892 923 2.079158 ACACATGCGAGTTCTGGATTG 58.921 47.619 0.00 0.00 0.00 2.67
893 924 1.399440 CACATGCGAGTTCTGGATTGG 59.601 52.381 0.00 0.00 0.00 3.16
894 925 1.278985 ACATGCGAGTTCTGGATTGGA 59.721 47.619 0.00 0.00 0.00 3.53
895 926 2.092753 ACATGCGAGTTCTGGATTGGAT 60.093 45.455 0.00 0.00 0.00 3.41
896 927 2.028420 TGCGAGTTCTGGATTGGATG 57.972 50.000 0.00 0.00 0.00 3.51
897 928 1.303309 GCGAGTTCTGGATTGGATGG 58.697 55.000 0.00 0.00 0.00 3.51
898 929 1.407437 GCGAGTTCTGGATTGGATGGT 60.407 52.381 0.00 0.00 0.00 3.55
899 930 2.941415 GCGAGTTCTGGATTGGATGGTT 60.941 50.000 0.00 0.00 0.00 3.67
900 931 3.347216 CGAGTTCTGGATTGGATGGTTT 58.653 45.455 0.00 0.00 0.00 3.27
901 932 3.127548 CGAGTTCTGGATTGGATGGTTTG 59.872 47.826 0.00 0.00 0.00 2.93
902 933 3.434309 AGTTCTGGATTGGATGGTTTGG 58.566 45.455 0.00 0.00 0.00 3.28
903 934 3.075882 AGTTCTGGATTGGATGGTTTGGA 59.924 43.478 0.00 0.00 0.00 3.53
904 935 3.370840 TCTGGATTGGATGGTTTGGAG 57.629 47.619 0.00 0.00 0.00 3.86
905 936 2.025037 TCTGGATTGGATGGTTTGGAGG 60.025 50.000 0.00 0.00 0.00 4.30
906 937 1.999295 TGGATTGGATGGTTTGGAGGA 59.001 47.619 0.00 0.00 0.00 3.71
907 938 2.586838 TGGATTGGATGGTTTGGAGGAT 59.413 45.455 0.00 0.00 0.00 3.24
908 939 3.790976 TGGATTGGATGGTTTGGAGGATA 59.209 43.478 0.00 0.00 0.00 2.59
909 940 4.231658 TGGATTGGATGGTTTGGAGGATAA 59.768 41.667 0.00 0.00 0.00 1.75
910 941 5.103129 TGGATTGGATGGTTTGGAGGATAAT 60.103 40.000 0.00 0.00 0.00 1.28
911 942 6.103946 TGGATTGGATGGTTTGGAGGATAATA 59.896 38.462 0.00 0.00 0.00 0.98
912 943 7.010160 GGATTGGATGGTTTGGAGGATAATAA 58.990 38.462 0.00 0.00 0.00 1.40
913 944 7.508977 GGATTGGATGGTTTGGAGGATAATAAA 59.491 37.037 0.00 0.00 0.00 1.40
914 945 9.093458 GATTGGATGGTTTGGAGGATAATAAAT 57.907 33.333 0.00 0.00 0.00 1.40
915 946 7.838079 TGGATGGTTTGGAGGATAATAAATG 57.162 36.000 0.00 0.00 0.00 2.32
916 947 6.267471 TGGATGGTTTGGAGGATAATAAATGC 59.733 38.462 0.00 0.00 0.00 3.56
917 948 6.494835 GGATGGTTTGGAGGATAATAAATGCT 59.505 38.462 0.00 0.00 0.00 3.79
918 949 6.959639 TGGTTTGGAGGATAATAAATGCTC 57.040 37.500 0.00 0.00 36.02 4.26
919 950 6.430864 TGGTTTGGAGGATAATAAATGCTCA 58.569 36.000 8.48 0.00 38.10 4.26
920 951 6.894654 TGGTTTGGAGGATAATAAATGCTCAA 59.105 34.615 8.48 0.00 38.10 3.02
921 952 7.564660 TGGTTTGGAGGATAATAAATGCTCAAT 59.435 33.333 8.48 0.00 38.10 2.57
922 953 9.077885 GGTTTGGAGGATAATAAATGCTCAATA 57.922 33.333 8.48 0.00 38.10 1.90
958 989 7.051000 AGTCTCTTTAGTATTTGGATCCAAGC 58.949 38.462 25.69 19.18 37.24 4.01
959 990 6.823689 GTCTCTTTAGTATTTGGATCCAAGCA 59.176 38.462 25.69 14.00 37.24 3.91
960 991 7.500559 GTCTCTTTAGTATTTGGATCCAAGCAT 59.499 37.037 25.69 19.69 37.24 3.79
961 992 7.500227 TCTCTTTAGTATTTGGATCCAAGCATG 59.500 37.037 25.69 12.43 37.24 4.06
970 1001 1.578215 ATCCAAGCATGGGTGAGGCT 61.578 55.000 8.36 0.00 45.93 4.58
971 1002 0.913934 TCCAAGCATGGGTGAGGCTA 60.914 55.000 8.36 0.00 42.15 3.93
972 1003 0.465097 CCAAGCATGGGTGAGGCTAG 60.465 60.000 0.00 0.00 42.15 3.42
973 1004 1.099879 CAAGCATGGGTGAGGCTAGC 61.100 60.000 6.04 6.04 42.15 3.42
974 1005 1.565390 AAGCATGGGTGAGGCTAGCA 61.565 55.000 18.24 0.00 42.15 3.49
975 1006 1.077501 GCATGGGTGAGGCTAGCAA 60.078 57.895 18.24 0.00 0.00 3.91
976 1007 1.099879 GCATGGGTGAGGCTAGCAAG 61.100 60.000 18.24 0.00 0.00 4.01
977 1008 0.254178 CATGGGTGAGGCTAGCAAGT 59.746 55.000 18.24 0.00 0.00 3.16
978 1009 0.995024 ATGGGTGAGGCTAGCAAGTT 59.005 50.000 18.24 0.00 0.00 2.66
979 1010 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
980 1011 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
981 1012 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
982 1013 3.010420 GGGTGAGGCTAGCAAGTTTTAG 58.990 50.000 18.24 0.00 0.00 1.85
983 1014 3.559384 GGGTGAGGCTAGCAAGTTTTAGT 60.559 47.826 18.24 0.00 0.00 2.24
984 1015 3.685272 GGTGAGGCTAGCAAGTTTTAGTC 59.315 47.826 18.24 0.00 0.00 2.59
985 1016 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
986 1017 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
987 1018 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
988 1019 2.747989 GGCTAGCAAGTTTTAGTCCCAC 59.252 50.000 18.24 0.00 0.00 4.61
989 1020 3.559384 GGCTAGCAAGTTTTAGTCCCACT 60.559 47.826 18.24 0.00 0.00 4.00
990 1021 4.323257 GGCTAGCAAGTTTTAGTCCCACTA 60.323 45.833 18.24 0.00 0.00 2.74
991 1022 4.630505 GCTAGCAAGTTTTAGTCCCACTAC 59.369 45.833 10.63 0.00 28.93 2.73
992 1023 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
993 1024 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
994 1025 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
995 1026 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
996 1027 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
997 1028 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
998 1029 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
999 1030 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
1000 1031 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
1001 1032 8.657712 AGTTTTAGTCCCACTACTTTTAGTCAT 58.342 33.333 0.00 0.00 36.31 3.06
1002 1033 8.718734 GTTTTAGTCCCACTACTTTTAGTCATG 58.281 37.037 0.00 0.00 36.31 3.07
1003 1034 5.422214 AGTCCCACTACTTTTAGTCATGG 57.578 43.478 0.00 0.00 36.31 3.66
1004 1035 4.225267 AGTCCCACTACTTTTAGTCATGGG 59.775 45.833 16.70 16.70 46.94 4.00
1019 1050 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
1020 1051 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
1021 1052 5.293569 GTCATGGGACTAAAACGTATCCAAG 59.706 44.000 0.00 0.00 40.99 3.61
1022 1053 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
1023 1054 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
1029 1060 1.276622 AACGTATCCAAGCACCCTCT 58.723 50.000 0.00 0.00 0.00 3.69
1087 1118 2.900167 CTGTCCACCGTCGACGTCA 61.900 63.158 33.49 21.66 37.74 4.35
1090 1121 4.712425 CCACCGTCGACGTCACCC 62.712 72.222 33.49 1.06 37.74 4.61
1311 1347 1.738099 CCTCCGGACGCTCAAGTTG 60.738 63.158 0.00 0.00 0.00 3.16
1415 1451 1.430632 CTATTGCCAAGCTGTGCGG 59.569 57.895 3.56 0.00 0.00 5.69
1421 1457 4.170062 CAAGCTGTGCGGCCATCG 62.170 66.667 2.24 0.00 42.76 3.84
1499 1535 1.602323 GAATTGGTGTGCCCCGTGA 60.602 57.895 0.00 0.00 0.00 4.35
1548 1584 1.129437 GCTGTTTCATTCCAGAGCGAC 59.871 52.381 0.00 0.00 0.00 5.19
1786 1823 2.406401 CCCGGTACTGCGTCGTAG 59.594 66.667 8.93 8.93 0.00 3.51
1827 1864 1.300697 GGTCAAGCGTGTTCCGAGT 60.301 57.895 0.00 0.00 39.56 4.18
1987 2040 0.172803 AGCTAAGAACGCGGTACTGG 59.827 55.000 12.47 0.00 0.00 4.00
2001 2054 3.421844 GGTACTGGACCTTGAAAATGCT 58.578 45.455 0.48 0.00 45.89 3.79
2087 2140 2.154462 GACTGAATGGTGGTTGTCTGG 58.846 52.381 0.00 0.00 0.00 3.86
2139 2192 3.795877 CAACATGCCTTTTGTCAAACCT 58.204 40.909 0.00 0.00 0.00 3.50
2186 2239 9.289782 AGACTAGATTATTGTTCTGCAGTTTTT 57.710 29.630 14.67 0.00 0.00 1.94
2295 2367 8.450578 TCAGTTCAGACACTATCAATGTTTTT 57.549 30.769 0.00 0.00 0.00 1.94
2318 2390 7.938140 TTAGAACATTGGGATTGGTCTTAAG 57.062 36.000 0.00 0.00 37.92 1.85
2504 3234 4.316025 AGCTGGGCTTTTGAGGTAATTA 57.684 40.909 0.00 0.00 33.89 1.40
2568 3298 8.274322 TGGTTGATTGATCTAACCATAATGACT 58.726 33.333 16.83 0.00 46.41 3.41
2591 3321 6.127366 ACTCATTGGTGTGTTCAGTTTTCATT 60.127 34.615 0.00 0.00 0.00 2.57
2594 3324 3.131933 TGGTGTGTTCAGTTTTCATTGGG 59.868 43.478 0.00 0.00 0.00 4.12
2625 3355 7.745620 ACCTTTGCCTACAAATAGTATATGC 57.254 36.000 0.00 0.00 44.54 3.14
2632 3362 7.758076 TGCCTACAAATAGTATATGCGTATGAC 59.242 37.037 8.77 3.61 30.93 3.06
2673 3403 5.109210 GCAAACATTAATTTCCCAGTAGCC 58.891 41.667 0.00 0.00 0.00 3.93
2681 3411 1.403814 TTCCCAGTAGCCTCTCATCG 58.596 55.000 0.00 0.00 0.00 3.84
2694 3424 3.265791 CTCTCATCGGTGCTTTAGCTTT 58.734 45.455 0.00 0.00 42.66 3.51
2703 3433 4.555262 GGTGCTTTAGCTTTATTTGTGCA 58.445 39.130 0.00 0.00 42.66 4.57
2739 3469 0.971959 GCAGAAACCATCATGCCCCA 60.972 55.000 0.00 0.00 32.49 4.96
2756 3486 3.510719 CCCCACAAATTGTTTCTATGCG 58.489 45.455 0.00 0.00 0.00 4.73
2774 3504 4.291540 TGCGATGCTAATTTCCATTGTC 57.708 40.909 0.00 2.41 0.00 3.18
2780 3510 3.374988 TGCTAATTTCCATTGTCGCTCAG 59.625 43.478 0.00 0.00 0.00 3.35
2787 3517 1.522668 CATTGTCGCTCAGTTTGGGA 58.477 50.000 0.00 0.00 0.00 4.37
2813 3543 7.256286 GCACTCAGCTGATTGATATTTTTCTT 58.744 34.615 31.62 0.00 41.15 2.52
2921 3652 8.715998 CACTTAATATACATTCTGGCTCACATC 58.284 37.037 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 46 8.870160 TCATCGATTTTGAAACAAAGTTCAAT 57.130 26.923 0.00 0.00 44.71 2.57
30 47 8.591312 GTTCATCGATTTTGAAACAAAGTTCAA 58.409 29.630 0.00 0.00 43.92 2.69
35 52 7.649306 AGAAGGTTCATCGATTTTGAAACAAAG 59.351 33.333 15.62 0.00 42.10 2.77
49 66 7.776933 TCATCTATTTCAAGAAGGTTCATCG 57.223 36.000 0.00 0.00 0.00 3.84
52 69 8.924511 AAGTTCATCTATTTCAAGAAGGTTCA 57.075 30.769 0.00 0.00 0.00 3.18
139 156 7.659652 AAGTCCGTCAATTTTGAAAACAAAA 57.340 28.000 9.87 9.87 39.21 2.44
140 157 7.659652 AAAGTCCGTCAATTTTGAAAACAAA 57.340 28.000 0.00 0.00 39.21 2.83
193 210 6.701400 CGGATTTTGGAGAAAAAGTTCAATGT 59.299 34.615 0.00 0.00 41.00 2.71
194 211 6.701400 ACGGATTTTGGAGAAAAAGTTCAATG 59.299 34.615 0.00 0.00 41.00 2.82
195 212 6.816136 ACGGATTTTGGAGAAAAAGTTCAAT 58.184 32.000 0.00 0.00 41.00 2.57
207 224 5.867174 GGGAATTGTTTTACGGATTTTGGAG 59.133 40.000 0.00 0.00 0.00 3.86
208 225 5.304614 TGGGAATTGTTTTACGGATTTTGGA 59.695 36.000 0.00 0.00 0.00 3.53
211 228 7.934120 TGAATTGGGAATTGTTTTACGGATTTT 59.066 29.630 0.00 0.00 0.00 1.82
213 230 6.998802 TGAATTGGGAATTGTTTTACGGATT 58.001 32.000 0.00 0.00 0.00 3.01
215 232 6.393990 CATGAATTGGGAATTGTTTTACGGA 58.606 36.000 0.00 0.00 0.00 4.69
216 233 5.580297 CCATGAATTGGGAATTGTTTTACGG 59.420 40.000 0.00 0.00 42.33 4.02
240 257 9.209297 GCAAAATGTTCACAAATTGAAAACTAC 57.791 29.630 0.00 0.00 46.09 2.73
243 260 8.617761 ATGCAAAATGTTCACAAATTGAAAAC 57.382 26.923 0.00 4.31 46.09 2.43
288 305 9.354673 TCTTCTCTTTGTAAAAGTTCATGGATT 57.645 29.630 0.00 0.00 0.00 3.01
322 339 6.047870 CCATTGACATGTTTGACCTTTGAAA 58.952 36.000 0.00 0.00 0.00 2.69
325 342 4.947645 ACCATTGACATGTTTGACCTTTG 58.052 39.130 0.00 0.00 0.00 2.77
326 343 4.648762 TGACCATTGACATGTTTGACCTTT 59.351 37.500 0.00 0.00 0.00 3.11
356 387 1.909700 TCTTCATGGTTGAACAGGCC 58.090 50.000 0.00 0.00 36.94 5.19
357 388 2.887152 ACTTCTTCATGGTTGAACAGGC 59.113 45.455 0.00 0.00 36.94 4.85
360 391 8.463930 AATAAGAACTTCTTCATGGTTGAACA 57.536 30.769 7.33 0.00 37.89 3.18
362 393 9.748708 CAAAATAAGAACTTCTTCATGGTTGAA 57.251 29.630 7.33 0.00 37.89 2.69
414 445 3.306973 ACACAACATCATACGCTTGATCG 59.693 43.478 0.00 0.00 34.09 3.69
415 446 4.093408 ACACACAACATCATACGCTTGATC 59.907 41.667 0.00 0.00 34.09 2.92
416 447 4.002982 ACACACAACATCATACGCTTGAT 58.997 39.130 0.00 0.00 36.79 2.57
417 448 3.398406 ACACACAACATCATACGCTTGA 58.602 40.909 0.00 0.00 0.00 3.02
418 449 3.811722 ACACACAACATCATACGCTTG 57.188 42.857 0.00 0.00 0.00 4.01
419 450 3.058293 CCAACACACAACATCATACGCTT 60.058 43.478 0.00 0.00 0.00 4.68
420 451 2.483877 CCAACACACAACATCATACGCT 59.516 45.455 0.00 0.00 0.00 5.07
421 452 2.850321 CCAACACACAACATCATACGC 58.150 47.619 0.00 0.00 0.00 4.42
422 453 2.225255 TGCCAACACACAACATCATACG 59.775 45.455 0.00 0.00 0.00 3.06
434 465 0.321564 AGCTATCGCTTGCCAACACA 60.322 50.000 0.00 0.00 46.47 3.72
454 485 0.676782 GCCCAAATACACCAGCGACT 60.677 55.000 0.00 0.00 0.00 4.18
455 486 0.676782 AGCCCAAATACACCAGCGAC 60.677 55.000 0.00 0.00 0.00 5.19
456 487 0.676466 CAGCCCAAATACACCAGCGA 60.676 55.000 0.00 0.00 0.00 4.93
457 488 1.656818 CCAGCCCAAATACACCAGCG 61.657 60.000 0.00 0.00 0.00 5.18
458 489 1.948721 GCCAGCCCAAATACACCAGC 61.949 60.000 0.00 0.00 0.00 4.85
459 490 1.322538 GGCCAGCCCAAATACACCAG 61.323 60.000 0.00 0.00 0.00 4.00
460 491 1.304879 GGCCAGCCCAAATACACCA 60.305 57.895 0.00 0.00 0.00 4.17
461 492 3.616086 GGCCAGCCCAAATACACC 58.384 61.111 0.00 0.00 0.00 4.16
471 502 2.037847 ACCTTTCATGGGCCAGCC 59.962 61.111 13.78 0.00 0.00 4.85
472 503 2.353610 CCACCTTTCATGGGCCAGC 61.354 63.158 13.78 0.00 33.18 4.85
473 504 1.077265 ACCACCTTTCATGGGCCAG 59.923 57.895 13.78 4.37 41.97 4.85
474 505 1.228831 CACCACCTTTCATGGGCCA 60.229 57.895 9.61 9.61 41.97 5.36
475 506 1.228862 ACACCACCTTTCATGGGCC 60.229 57.895 0.00 0.00 41.97 5.80
476 507 1.535204 CCACACCACCTTTCATGGGC 61.535 60.000 0.00 0.00 41.97 5.36
477 508 0.899717 CCCACACCACCTTTCATGGG 60.900 60.000 0.00 0.00 41.97 4.00
478 509 0.112218 TCCCACACCACCTTTCATGG 59.888 55.000 0.00 0.00 43.43 3.66
479 510 1.202927 ACTCCCACACCACCTTTCATG 60.203 52.381 0.00 0.00 0.00 3.07
480 511 1.149101 ACTCCCACACCACCTTTCAT 58.851 50.000 0.00 0.00 0.00 2.57
481 512 1.809133 TACTCCCACACCACCTTTCA 58.191 50.000 0.00 0.00 0.00 2.69
482 513 3.081804 CAATACTCCCACACCACCTTTC 58.918 50.000 0.00 0.00 0.00 2.62
483 514 2.817839 GCAATACTCCCACACCACCTTT 60.818 50.000 0.00 0.00 0.00 3.11
484 515 1.271926 GCAATACTCCCACACCACCTT 60.272 52.381 0.00 0.00 0.00 3.50
485 516 0.328258 GCAATACTCCCACACCACCT 59.672 55.000 0.00 0.00 0.00 4.00
486 517 1.024579 CGCAATACTCCCACACCACC 61.025 60.000 0.00 0.00 0.00 4.61
487 518 1.644786 GCGCAATACTCCCACACCAC 61.645 60.000 0.30 0.00 0.00 4.16
488 519 1.376683 GCGCAATACTCCCACACCA 60.377 57.895 0.30 0.00 0.00 4.17
489 520 2.112815 GGCGCAATACTCCCACACC 61.113 63.158 10.83 0.00 0.00 4.16
490 521 2.112815 GGGCGCAATACTCCCACAC 61.113 63.158 10.83 0.00 43.52 3.82
491 522 2.270850 GGGCGCAATACTCCCACA 59.729 61.111 10.83 0.00 43.52 4.17
492 523 2.895372 CGGGCGCAATACTCCCAC 60.895 66.667 10.83 0.00 44.37 4.61
493 524 4.849310 GCGGGCGCAATACTCCCA 62.849 66.667 10.83 0.00 44.37 4.37
494 525 2.653953 TTAGCGGGCGCAATACTCCC 62.654 60.000 10.83 0.00 44.88 4.30
495 526 1.227438 TTAGCGGGCGCAATACTCC 60.227 57.895 10.83 0.00 44.88 3.85
496 527 0.808453 TGTTAGCGGGCGCAATACTC 60.808 55.000 10.83 0.00 44.88 2.59
497 528 0.391927 TTGTTAGCGGGCGCAATACT 60.392 50.000 10.83 2.89 44.88 2.12
498 529 0.448593 TTTGTTAGCGGGCGCAATAC 59.551 50.000 10.83 0.00 44.88 1.89
499 530 1.166129 TTTTGTTAGCGGGCGCAATA 58.834 45.000 10.83 0.00 44.88 1.90
500 531 0.315568 TTTTTGTTAGCGGGCGCAAT 59.684 45.000 10.83 0.00 44.88 3.56
501 532 1.734137 TTTTTGTTAGCGGGCGCAA 59.266 47.368 10.83 0.00 44.88 4.85
502 533 3.433319 TTTTTGTTAGCGGGCGCA 58.567 50.000 10.83 0.00 44.88 6.09
517 548 4.036262 TCATCACTTGTTGCGCTAGTTTTT 59.964 37.500 9.73 0.00 31.00 1.94
518 549 3.563808 TCATCACTTGTTGCGCTAGTTTT 59.436 39.130 9.73 0.00 31.00 2.43
519 550 3.058914 GTCATCACTTGTTGCGCTAGTTT 60.059 43.478 9.73 0.00 31.00 2.66
520 551 2.480419 GTCATCACTTGTTGCGCTAGTT 59.520 45.455 9.73 0.00 31.00 2.24
521 552 2.069273 GTCATCACTTGTTGCGCTAGT 58.931 47.619 9.73 4.01 33.58 2.57
522 553 2.341257 AGTCATCACTTGTTGCGCTAG 58.659 47.619 9.73 3.32 0.00 3.42
523 554 2.455674 AGTCATCACTTGTTGCGCTA 57.544 45.000 9.73 0.00 0.00 4.26
524 555 2.029020 TCTAGTCATCACTTGTTGCGCT 60.029 45.455 9.73 0.00 33.62 5.92
525 556 2.337583 TCTAGTCATCACTTGTTGCGC 58.662 47.619 0.00 0.00 33.62 6.09
526 557 3.369147 CCTTCTAGTCATCACTTGTTGCG 59.631 47.826 0.00 0.00 33.62 4.85
527 558 4.319177 ACCTTCTAGTCATCACTTGTTGC 58.681 43.478 0.00 0.00 33.62 4.17
528 559 4.932200 GGACCTTCTAGTCATCACTTGTTG 59.068 45.833 0.00 0.00 38.59 3.33
529 560 4.020128 GGGACCTTCTAGTCATCACTTGTT 60.020 45.833 0.00 0.00 38.59 2.83
530 561 3.515901 GGGACCTTCTAGTCATCACTTGT 59.484 47.826 0.00 0.00 38.59 3.16
531 562 3.429547 CGGGACCTTCTAGTCATCACTTG 60.430 52.174 0.00 0.00 38.59 3.16
532 563 2.761208 CGGGACCTTCTAGTCATCACTT 59.239 50.000 0.00 0.00 38.59 3.16
533 564 2.025226 TCGGGACCTTCTAGTCATCACT 60.025 50.000 0.00 0.00 38.59 3.41
534 565 2.376109 TCGGGACCTTCTAGTCATCAC 58.624 52.381 0.00 0.00 38.59 3.06
535 566 2.820728 TCGGGACCTTCTAGTCATCA 57.179 50.000 0.00 0.00 38.59 3.07
536 567 2.959707 ACATCGGGACCTTCTAGTCATC 59.040 50.000 0.00 0.00 38.59 2.92
537 568 3.033659 ACATCGGGACCTTCTAGTCAT 57.966 47.619 0.00 0.00 38.59 3.06
538 569 2.526888 ACATCGGGACCTTCTAGTCA 57.473 50.000 0.00 0.00 38.59 3.41
539 570 3.285484 TGTACATCGGGACCTTCTAGTC 58.715 50.000 0.00 0.00 35.95 2.59
540 571 3.377253 TGTACATCGGGACCTTCTAGT 57.623 47.619 0.00 0.00 0.00 2.57
541 572 3.068307 CCTTGTACATCGGGACCTTCTAG 59.932 52.174 0.00 0.00 0.00 2.43
542 573 3.028850 CCTTGTACATCGGGACCTTCTA 58.971 50.000 0.00 0.00 0.00 2.10
543 574 1.831736 CCTTGTACATCGGGACCTTCT 59.168 52.381 0.00 0.00 0.00 2.85
544 575 1.829222 TCCTTGTACATCGGGACCTTC 59.171 52.381 10.75 0.00 0.00 3.46
545 576 1.831736 CTCCTTGTACATCGGGACCTT 59.168 52.381 10.75 0.00 0.00 3.50
546 577 1.273098 ACTCCTTGTACATCGGGACCT 60.273 52.381 10.75 0.00 0.00 3.85
547 578 1.192428 ACTCCTTGTACATCGGGACC 58.808 55.000 10.75 0.00 0.00 4.46
548 579 2.223758 GCTACTCCTTGTACATCGGGAC 60.224 54.545 10.75 0.00 0.00 4.46
549 580 2.029623 GCTACTCCTTGTACATCGGGA 58.970 52.381 10.75 10.78 0.00 5.14
550 581 1.754803 TGCTACTCCTTGTACATCGGG 59.245 52.381 10.75 7.54 0.00 5.14
551 582 3.068165 TGATGCTACTCCTTGTACATCGG 59.932 47.826 0.00 0.38 39.58 4.18
552 583 4.045104 GTGATGCTACTCCTTGTACATCG 58.955 47.826 0.00 0.00 39.58 3.84
553 584 4.806247 GTGTGATGCTACTCCTTGTACATC 59.194 45.833 0.00 0.00 38.56 3.06
554 585 4.222810 TGTGTGATGCTACTCCTTGTACAT 59.777 41.667 0.00 0.00 0.00 2.29
555 586 3.576550 TGTGTGATGCTACTCCTTGTACA 59.423 43.478 0.00 0.00 0.00 2.90
556 587 4.188247 TGTGTGATGCTACTCCTTGTAC 57.812 45.455 0.00 0.00 0.00 2.90
557 588 4.882842 TTGTGTGATGCTACTCCTTGTA 57.117 40.909 0.00 0.00 0.00 2.41
558 589 3.769739 TTGTGTGATGCTACTCCTTGT 57.230 42.857 0.00 0.00 0.00 3.16
559 590 3.189287 GGTTTGTGTGATGCTACTCCTTG 59.811 47.826 0.00 0.00 0.00 3.61
560 591 3.181445 TGGTTTGTGTGATGCTACTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
561 592 2.371841 TGGTTTGTGTGATGCTACTCCT 59.628 45.455 0.00 0.00 0.00 3.69
562 593 2.778299 TGGTTTGTGTGATGCTACTCC 58.222 47.619 0.00 0.00 0.00 3.85
563 594 4.787598 CTTTGGTTTGTGTGATGCTACTC 58.212 43.478 0.00 0.00 0.00 2.59
564 595 3.004734 GCTTTGGTTTGTGTGATGCTACT 59.995 43.478 0.00 0.00 0.00 2.57
565 596 3.308530 GCTTTGGTTTGTGTGATGCTAC 58.691 45.455 0.00 0.00 0.00 3.58
566 597 2.295909 GGCTTTGGTTTGTGTGATGCTA 59.704 45.455 0.00 0.00 0.00 3.49
567 598 1.069049 GGCTTTGGTTTGTGTGATGCT 59.931 47.619 0.00 0.00 0.00 3.79
568 599 1.501169 GGCTTTGGTTTGTGTGATGC 58.499 50.000 0.00 0.00 0.00 3.91
569 600 1.336440 TCGGCTTTGGTTTGTGTGATG 59.664 47.619 0.00 0.00 0.00 3.07
570 601 1.336755 GTCGGCTTTGGTTTGTGTGAT 59.663 47.619 0.00 0.00 0.00 3.06
571 602 0.736053 GTCGGCTTTGGTTTGTGTGA 59.264 50.000 0.00 0.00 0.00 3.58
572 603 0.453793 TGTCGGCTTTGGTTTGTGTG 59.546 50.000 0.00 0.00 0.00 3.82
573 604 0.454196 GTGTCGGCTTTGGTTTGTGT 59.546 50.000 0.00 0.00 0.00 3.72
574 605 0.248866 GGTGTCGGCTTTGGTTTGTG 60.249 55.000 0.00 0.00 0.00 3.33
575 606 1.388837 GGGTGTCGGCTTTGGTTTGT 61.389 55.000 0.00 0.00 0.00 2.83
576 607 1.362355 GGGTGTCGGCTTTGGTTTG 59.638 57.895 0.00 0.00 0.00 2.93
577 608 1.830847 GGGGTGTCGGCTTTGGTTT 60.831 57.895 0.00 0.00 0.00 3.27
578 609 1.420532 TAGGGGTGTCGGCTTTGGTT 61.421 55.000 0.00 0.00 0.00 3.67
579 610 1.844289 TAGGGGTGTCGGCTTTGGT 60.844 57.895 0.00 0.00 0.00 3.67
580 611 1.376812 GTAGGGGTGTCGGCTTTGG 60.377 63.158 0.00 0.00 0.00 3.28
581 612 1.740296 CGTAGGGGTGTCGGCTTTG 60.740 63.158 0.00 0.00 0.00 2.77
582 613 2.212110 ACGTAGGGGTGTCGGCTTT 61.212 57.895 0.00 0.00 0.00 3.51
583 614 2.602568 ACGTAGGGGTGTCGGCTT 60.603 61.111 0.00 0.00 0.00 4.35
584 615 3.379445 CACGTAGGGGTGTCGGCT 61.379 66.667 0.00 0.00 33.24 5.52
590 621 0.320421 CACTTCCACACGTAGGGGTG 60.320 60.000 10.90 10.90 43.54 4.61
591 622 0.761702 ACACTTCCACACGTAGGGGT 60.762 55.000 6.40 3.88 0.00 4.95
592 623 0.395312 AACACTTCCACACGTAGGGG 59.605 55.000 6.40 3.41 0.00 4.79
593 624 1.508632 CAACACTTCCACACGTAGGG 58.491 55.000 6.40 2.53 0.00 3.53
594 625 0.865769 GCAACACTTCCACACGTAGG 59.134 55.000 0.00 0.00 0.00 3.18
595 626 0.506932 CGCAACACTTCCACACGTAG 59.493 55.000 0.00 0.00 0.00 3.51
596 627 1.492319 GCGCAACACTTCCACACGTA 61.492 55.000 0.30 0.00 0.00 3.57
597 628 2.819552 GCGCAACACTTCCACACGT 61.820 57.895 0.30 0.00 0.00 4.49
598 629 2.052237 GCGCAACACTTCCACACG 60.052 61.111 0.30 0.00 0.00 4.49
599 630 2.331451 GGCGCAACACTTCCACAC 59.669 61.111 10.83 0.00 0.00 3.82
600 631 2.904866 GGGCGCAACACTTCCACA 60.905 61.111 10.83 0.00 0.00 4.17
601 632 4.025401 CGGGCGCAACACTTCCAC 62.025 66.667 10.83 0.00 0.00 4.02
604 635 2.322081 TTAGCGGGCGCAACACTTC 61.322 57.895 10.83 0.00 44.88 3.01
605 636 2.281208 TTAGCGGGCGCAACACTT 60.281 55.556 10.83 0.00 44.88 3.16
606 637 3.047877 GTTAGCGGGCGCAACACT 61.048 61.111 10.83 3.12 44.88 3.55
607 638 2.395367 TTTGTTAGCGGGCGCAACAC 62.395 55.000 10.83 0.00 44.88 3.32
608 639 1.725557 TTTTGTTAGCGGGCGCAACA 61.726 50.000 10.83 8.08 44.88 3.33
609 640 0.595310 TTTTTGTTAGCGGGCGCAAC 60.595 50.000 10.83 5.00 44.88 4.17
610 641 1.734137 TTTTTGTTAGCGGGCGCAA 59.266 47.368 10.83 0.00 44.88 4.85
611 642 3.433319 TTTTTGTTAGCGGGCGCA 58.567 50.000 10.83 0.00 44.88 6.09
627 658 1.269051 GCACTGGTTGCGCTAGTTTTT 60.269 47.619 9.73 0.00 42.79 1.94
628 659 0.310854 GCACTGGTTGCGCTAGTTTT 59.689 50.000 9.73 0.00 42.79 2.43
629 660 1.949257 GCACTGGTTGCGCTAGTTT 59.051 52.632 9.73 0.00 42.79 2.66
630 661 3.655481 GCACTGGTTGCGCTAGTT 58.345 55.556 9.73 0.00 42.79 2.24
638 669 1.151668 CTTTCTCGAGGCACTGGTTG 58.848 55.000 13.56 0.00 41.55 3.77
639 670 0.603975 GCTTTCTCGAGGCACTGGTT 60.604 55.000 13.56 0.00 41.55 3.67
640 671 1.004440 GCTTTCTCGAGGCACTGGT 60.004 57.895 13.56 0.00 41.55 4.00
641 672 0.739112 GAGCTTTCTCGAGGCACTGG 60.739 60.000 13.56 0.00 41.55 4.00
642 673 0.246086 AGAGCTTTCTCGAGGCACTG 59.754 55.000 13.56 0.29 44.02 3.66
643 674 0.530288 GAGAGCTTTCTCGAGGCACT 59.470 55.000 13.56 11.94 44.02 4.40
644 675 0.459411 GGAGAGCTTTCTCGAGGCAC 60.459 60.000 13.56 7.03 44.02 5.01
645 676 1.608717 GGGAGAGCTTTCTCGAGGCA 61.609 60.000 13.56 0.00 44.02 4.75
646 677 1.142965 GGGAGAGCTTTCTCGAGGC 59.857 63.158 13.56 8.39 44.02 4.70
647 678 1.068434 GATGGGAGAGCTTTCTCGAGG 59.932 57.143 13.56 0.00 44.02 4.63
648 679 2.031120 AGATGGGAGAGCTTTCTCGAG 58.969 52.381 5.93 5.93 44.02 4.04
649 680 1.753649 CAGATGGGAGAGCTTTCTCGA 59.246 52.381 4.01 0.00 44.02 4.04
650 681 1.753649 TCAGATGGGAGAGCTTTCTCG 59.246 52.381 4.01 0.00 44.02 4.04
651 682 3.902881 TTCAGATGGGAGAGCTTTCTC 57.097 47.619 4.01 0.00 39.65 2.87
652 683 4.385088 GGATTTCAGATGGGAGAGCTTTCT 60.385 45.833 4.01 0.00 0.00 2.52
653 684 3.882288 GGATTTCAGATGGGAGAGCTTTC 59.118 47.826 0.00 0.00 0.00 2.62
654 685 3.372458 GGGATTTCAGATGGGAGAGCTTT 60.372 47.826 0.00 0.00 0.00 3.51
655 686 2.174424 GGGATTTCAGATGGGAGAGCTT 59.826 50.000 0.00 0.00 0.00 3.74
656 687 1.773653 GGGATTTCAGATGGGAGAGCT 59.226 52.381 0.00 0.00 0.00 4.09
657 688 1.202867 GGGGATTTCAGATGGGAGAGC 60.203 57.143 0.00 0.00 0.00 4.09
658 689 2.130193 TGGGGATTTCAGATGGGAGAG 58.870 52.381 0.00 0.00 0.00 3.20
659 690 2.285275 TGGGGATTTCAGATGGGAGA 57.715 50.000 0.00 0.00 0.00 3.71
660 691 2.715336 AGATGGGGATTTCAGATGGGAG 59.285 50.000 0.00 0.00 0.00 4.30
661 692 2.793017 AGATGGGGATTTCAGATGGGA 58.207 47.619 0.00 0.00 0.00 4.37
662 693 4.352001 TCTTAGATGGGGATTTCAGATGGG 59.648 45.833 0.00 0.00 0.00 4.00
663 694 5.514484 CCTCTTAGATGGGGATTTCAGATGG 60.514 48.000 0.00 0.00 0.00 3.51
664 695 5.514484 CCCTCTTAGATGGGGATTTCAGATG 60.514 48.000 0.58 0.00 42.58 2.90
665 696 4.600983 CCCTCTTAGATGGGGATTTCAGAT 59.399 45.833 0.58 0.00 42.58 2.90
666 697 3.976654 CCCTCTTAGATGGGGATTTCAGA 59.023 47.826 0.58 0.00 42.58 3.27
667 698 4.363991 CCCTCTTAGATGGGGATTTCAG 57.636 50.000 0.58 0.00 42.58 3.02
676 707 1.839994 TCCAAGCACCCTCTTAGATGG 59.160 52.381 1.94 1.94 0.00 3.51
677 708 3.853355 ATCCAAGCACCCTCTTAGATG 57.147 47.619 0.00 0.00 0.00 2.90
678 709 3.782523 TGAATCCAAGCACCCTCTTAGAT 59.217 43.478 0.00 0.00 0.00 1.98
679 710 3.181329 TGAATCCAAGCACCCTCTTAGA 58.819 45.455 0.00 0.00 0.00 2.10
680 711 3.634397 TGAATCCAAGCACCCTCTTAG 57.366 47.619 0.00 0.00 0.00 2.18
681 712 3.308402 CCTTGAATCCAAGCACCCTCTTA 60.308 47.826 0.00 0.00 46.42 2.10
682 713 2.556114 CCTTGAATCCAAGCACCCTCTT 60.556 50.000 0.00 0.00 46.42 2.85
683 714 1.005215 CCTTGAATCCAAGCACCCTCT 59.995 52.381 0.00 0.00 46.42 3.69
684 715 1.467920 CCTTGAATCCAAGCACCCTC 58.532 55.000 0.00 0.00 46.42 4.30
685 716 0.040204 CCCTTGAATCCAAGCACCCT 59.960 55.000 0.00 0.00 46.42 4.34
686 717 0.039618 TCCCTTGAATCCAAGCACCC 59.960 55.000 0.00 0.00 46.42 4.61
687 718 1.177401 GTCCCTTGAATCCAAGCACC 58.823 55.000 0.00 0.00 46.42 5.01
688 719 2.206576 AGTCCCTTGAATCCAAGCAC 57.793 50.000 0.00 0.00 46.42 4.40
689 720 4.591321 AATAGTCCCTTGAATCCAAGCA 57.409 40.909 0.00 0.00 46.42 3.91
690 721 5.921962 AAAATAGTCCCTTGAATCCAAGC 57.078 39.130 0.00 0.00 46.42 4.01
691 722 8.678199 GACTAAAAATAGTCCCTTGAATCCAAG 58.322 37.037 4.96 0.00 41.43 3.61
692 723 8.390921 AGACTAAAAATAGTCCCTTGAATCCAA 58.609 33.333 11.35 0.00 45.66 3.53
693 724 7.829211 CAGACTAAAAATAGTCCCTTGAATCCA 59.171 37.037 11.35 0.00 45.66 3.41
694 725 8.047310 TCAGACTAAAAATAGTCCCTTGAATCC 58.953 37.037 11.35 0.00 45.66 3.01
695 726 8.884726 GTCAGACTAAAAATAGTCCCTTGAATC 58.115 37.037 11.35 0.00 45.66 2.52
696 727 8.606830 AGTCAGACTAAAAATAGTCCCTTGAAT 58.393 33.333 0.00 6.62 45.66 2.57
697 728 7.974504 AGTCAGACTAAAAATAGTCCCTTGAA 58.025 34.615 0.00 0.00 45.66 2.69
698 729 7.554959 AGTCAGACTAAAAATAGTCCCTTGA 57.445 36.000 0.00 7.17 45.66 3.02
699 730 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
718 749 9.654663 GCCTCTAAAAGAGACTATTTTTAGTCA 57.345 33.333 12.70 4.01 45.07 3.41
719 750 9.878667 AGCCTCTAAAAGAGACTATTTTTAGTC 57.121 33.333 12.70 5.24 45.07 2.59
726 757 9.878667 GAACTTTAGCCTCTAAAAGAGACTATT 57.121 33.333 5.50 0.00 45.07 1.73
727 758 8.479689 GGAACTTTAGCCTCTAAAAGAGACTAT 58.520 37.037 5.50 0.00 45.07 2.12
728 759 7.453752 TGGAACTTTAGCCTCTAAAAGAGACTA 59.546 37.037 5.50 0.91 45.07 2.59
729 760 6.270231 TGGAACTTTAGCCTCTAAAAGAGACT 59.730 38.462 5.50 1.89 45.07 3.24
730 761 6.465084 TGGAACTTTAGCCTCTAAAAGAGAC 58.535 40.000 5.50 0.00 45.07 3.36
731 762 6.681729 TGGAACTTTAGCCTCTAAAAGAGA 57.318 37.500 5.50 0.00 45.07 3.10
732 763 6.128145 GCTTGGAACTTTAGCCTCTAAAAGAG 60.128 42.308 2.08 0.00 41.96 2.85
733 764 5.705905 GCTTGGAACTTTAGCCTCTAAAAGA 59.294 40.000 2.08 0.00 36.43 2.52
734 765 5.473504 TGCTTGGAACTTTAGCCTCTAAAAG 59.526 40.000 0.00 0.00 38.41 2.27
735 766 5.240844 GTGCTTGGAACTTTAGCCTCTAAAA 59.759 40.000 0.00 0.00 34.03 1.52
736 767 4.760204 GTGCTTGGAACTTTAGCCTCTAAA 59.240 41.667 0.00 0.00 34.03 1.85
737 768 4.324267 GTGCTTGGAACTTTAGCCTCTAA 58.676 43.478 0.00 0.00 34.03 2.10
738 769 3.307480 GGTGCTTGGAACTTTAGCCTCTA 60.307 47.826 0.00 0.00 34.03 2.43
739 770 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
740 771 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
741 772 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
742 773 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
743 774 1.911057 AGGGTGCTTGGAACTTTAGC 58.089 50.000 0.00 0.00 35.50 3.09
744 775 3.253432 GTCAAGGGTGCTTGGAACTTTAG 59.747 47.826 0.00 0.00 35.23 1.85
745 776 3.117663 AGTCAAGGGTGCTTGGAACTTTA 60.118 43.478 0.00 0.00 35.23 1.85
746 777 2.031870 GTCAAGGGTGCTTGGAACTTT 58.968 47.619 0.00 0.00 35.23 2.66
747 778 1.215423 AGTCAAGGGTGCTTGGAACTT 59.785 47.619 0.00 0.00 35.23 2.66
748 779 0.846693 AGTCAAGGGTGCTTGGAACT 59.153 50.000 0.00 0.00 35.23 3.01
749 780 2.561478 TAGTCAAGGGTGCTTGGAAC 57.439 50.000 0.00 0.00 35.23 3.62
750 781 3.137544 TCTTTAGTCAAGGGTGCTTGGAA 59.862 43.478 0.00 0.00 35.23 3.53
751 782 2.708861 TCTTTAGTCAAGGGTGCTTGGA 59.291 45.455 0.00 0.00 35.23 3.53
752 783 3.077359 CTCTTTAGTCAAGGGTGCTTGG 58.923 50.000 0.00 0.00 35.23 3.61
753 784 3.999663 CTCTCTTTAGTCAAGGGTGCTTG 59.000 47.826 0.00 0.00 34.09 4.01
754 785 3.008485 CCTCTCTTTAGTCAAGGGTGCTT 59.992 47.826 0.00 0.00 34.09 3.91
755 786 2.569404 CCTCTCTTTAGTCAAGGGTGCT 59.431 50.000 0.00 0.00 34.09 4.40
756 787 2.937433 GCCTCTCTTTAGTCAAGGGTGC 60.937 54.545 0.00 0.00 34.09 5.01
757 788 2.569404 AGCCTCTCTTTAGTCAAGGGTG 59.431 50.000 0.00 0.00 36.53 4.61
758 789 2.909217 AGCCTCTCTTTAGTCAAGGGT 58.091 47.619 0.00 0.00 34.09 4.34
759 790 3.386402 CCTAGCCTCTCTTTAGTCAAGGG 59.614 52.174 0.00 0.00 33.61 3.95
760 791 4.098807 GTCCTAGCCTCTCTTTAGTCAAGG 59.901 50.000 0.00 0.00 32.64 3.61
761 792 4.953579 AGTCCTAGCCTCTCTTTAGTCAAG 59.046 45.833 0.00 0.00 0.00 3.02
762 793 4.936802 AGTCCTAGCCTCTCTTTAGTCAA 58.063 43.478 0.00 0.00 0.00 3.18
763 794 4.594675 AGTCCTAGCCTCTCTTTAGTCA 57.405 45.455 0.00 0.00 0.00 3.41
764 795 5.687780 ACTAGTCCTAGCCTCTCTTTAGTC 58.312 45.833 1.22 0.00 36.66 2.59
765 796 5.430745 AGACTAGTCCTAGCCTCTCTTTAGT 59.569 44.000 19.38 0.00 36.66 2.24
766 797 5.937111 AGACTAGTCCTAGCCTCTCTTTAG 58.063 45.833 19.38 0.00 36.66 1.85
767 798 5.979656 AGACTAGTCCTAGCCTCTCTTTA 57.020 43.478 19.38 0.00 36.66 1.85
768 799 4.873724 AGACTAGTCCTAGCCTCTCTTT 57.126 45.455 19.38 0.00 36.66 2.52
769 800 4.228666 TCAAGACTAGTCCTAGCCTCTCTT 59.771 45.833 19.38 0.17 36.66 2.85
770 801 3.783642 TCAAGACTAGTCCTAGCCTCTCT 59.216 47.826 19.38 0.00 36.66 3.10
771 802 4.134563 CTCAAGACTAGTCCTAGCCTCTC 58.865 52.174 19.38 0.00 36.66 3.20
772 803 3.117663 CCTCAAGACTAGTCCTAGCCTCT 60.118 52.174 19.38 0.00 36.66 3.69
773 804 3.219281 CCTCAAGACTAGTCCTAGCCTC 58.781 54.545 19.38 0.00 36.66 4.70
774 805 2.688515 GCCTCAAGACTAGTCCTAGCCT 60.689 54.545 19.38 0.00 36.66 4.58
775 806 1.684450 GCCTCAAGACTAGTCCTAGCC 59.316 57.143 19.38 0.89 36.66 3.93
776 807 2.661718 AGCCTCAAGACTAGTCCTAGC 58.338 52.381 19.38 14.54 36.66 3.42
777 808 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
778 809 6.724905 AGTTTTTAGCCTCAAGACTAGTCCTA 59.275 38.462 19.38 9.39 0.00 2.94
779 810 5.544562 AGTTTTTAGCCTCAAGACTAGTCCT 59.455 40.000 19.38 10.36 0.00 3.85
780 811 5.795972 AGTTTTTAGCCTCAAGACTAGTCC 58.204 41.667 19.38 2.89 0.00 3.85
781 812 7.731882 AAAGTTTTTAGCCTCAAGACTAGTC 57.268 36.000 15.41 15.41 0.00 2.59
782 813 9.274206 CTAAAAGTTTTTAGCCTCAAGACTAGT 57.726 33.333 6.10 0.00 41.97 2.57
818 849 9.617053 AGAGGGCTAATACATATTTTAGTAGGT 57.383 33.333 0.00 0.00 0.00 3.08
822 853 9.608718 AGAGAGAGGGCTAATACATATTTTAGT 57.391 33.333 0.00 0.00 0.00 2.24
824 855 9.036980 GGAGAGAGAGGGCTAATACATATTTTA 57.963 37.037 0.00 0.00 0.00 1.52
825 856 7.737149 AGGAGAGAGAGGGCTAATACATATTTT 59.263 37.037 0.00 0.00 0.00 1.82
826 857 7.252678 AGGAGAGAGAGGGCTAATACATATTT 58.747 38.462 0.00 0.00 0.00 1.40
827 858 6.810500 AGGAGAGAGAGGGCTAATACATATT 58.189 40.000 0.00 0.00 0.00 1.28
828 859 6.011185 TGAGGAGAGAGAGGGCTAATACATAT 60.011 42.308 0.00 0.00 0.00 1.78
829 860 5.313506 TGAGGAGAGAGAGGGCTAATACATA 59.686 44.000 0.00 0.00 0.00 2.29
830 861 4.107149 TGAGGAGAGAGAGGGCTAATACAT 59.893 45.833 0.00 0.00 0.00 2.29
831 862 3.463704 TGAGGAGAGAGAGGGCTAATACA 59.536 47.826 0.00 0.00 0.00 2.29
832 863 4.107127 TGAGGAGAGAGAGGGCTAATAC 57.893 50.000 0.00 0.00 0.00 1.89
833 864 5.346782 AATGAGGAGAGAGAGGGCTAATA 57.653 43.478 0.00 0.00 0.00 0.98
834 865 3.921287 ATGAGGAGAGAGAGGGCTAAT 57.079 47.619 0.00 0.00 0.00 1.73
835 866 3.697190 AATGAGGAGAGAGAGGGCTAA 57.303 47.619 0.00 0.00 0.00 3.09
836 867 3.697190 AAATGAGGAGAGAGAGGGCTA 57.303 47.619 0.00 0.00 0.00 3.93
837 868 2.566708 AAATGAGGAGAGAGAGGGCT 57.433 50.000 0.00 0.00 0.00 5.19
838 869 4.972751 ATTAAATGAGGAGAGAGAGGGC 57.027 45.455 0.00 0.00 0.00 5.19
839 870 5.606329 AGGAATTAAATGAGGAGAGAGAGGG 59.394 44.000 0.00 0.00 0.00 4.30
840 871 6.554605 AGAGGAATTAAATGAGGAGAGAGAGG 59.445 42.308 0.00 0.00 0.00 3.69
841 872 7.601705 AGAGGAATTAAATGAGGAGAGAGAG 57.398 40.000 0.00 0.00 0.00 3.20
842 873 9.667607 AATAGAGGAATTAAATGAGGAGAGAGA 57.332 33.333 0.00 0.00 0.00 3.10
854 885 9.781834 CGCATGTGTTAAAATAGAGGAATTAAA 57.218 29.630 0.00 0.00 0.00 1.52
855 886 9.168451 TCGCATGTGTTAAAATAGAGGAATTAA 57.832 29.630 6.09 0.00 0.00 1.40
856 887 8.725405 TCGCATGTGTTAAAATAGAGGAATTA 57.275 30.769 6.09 0.00 0.00 1.40
857 888 7.336931 ACTCGCATGTGTTAAAATAGAGGAATT 59.663 33.333 6.09 0.00 0.00 2.17
858 889 6.823689 ACTCGCATGTGTTAAAATAGAGGAAT 59.176 34.615 6.09 0.00 0.00 3.01
859 890 6.170506 ACTCGCATGTGTTAAAATAGAGGAA 58.829 36.000 6.09 0.00 0.00 3.36
860 891 5.730550 ACTCGCATGTGTTAAAATAGAGGA 58.269 37.500 6.09 0.00 0.00 3.71
861 892 6.313905 AGAACTCGCATGTGTTAAAATAGAGG 59.686 38.462 6.09 0.00 32.29 3.69
862 893 7.176075 CAGAACTCGCATGTGTTAAAATAGAG 58.824 38.462 6.09 0.00 32.29 2.43
863 894 6.092122 CCAGAACTCGCATGTGTTAAAATAGA 59.908 38.462 6.09 0.00 32.29 1.98
864 895 6.092122 TCCAGAACTCGCATGTGTTAAAATAG 59.908 38.462 6.09 0.00 32.29 1.73
865 896 5.935206 TCCAGAACTCGCATGTGTTAAAATA 59.065 36.000 6.09 0.00 32.29 1.40
866 897 4.759693 TCCAGAACTCGCATGTGTTAAAAT 59.240 37.500 6.09 0.00 32.29 1.82
867 898 4.130857 TCCAGAACTCGCATGTGTTAAAA 58.869 39.130 6.09 0.00 32.29 1.52
868 899 3.734463 TCCAGAACTCGCATGTGTTAAA 58.266 40.909 6.09 0.00 32.29 1.52
869 900 3.394674 TCCAGAACTCGCATGTGTTAA 57.605 42.857 6.09 0.00 32.29 2.01
870 901 3.610040 ATCCAGAACTCGCATGTGTTA 57.390 42.857 6.09 0.00 32.29 2.41
871 902 2.479566 ATCCAGAACTCGCATGTGTT 57.520 45.000 6.09 3.50 34.68 3.32
872 903 2.079158 CAATCCAGAACTCGCATGTGT 58.921 47.619 6.09 0.00 0.00 3.72
873 904 1.399440 CCAATCCAGAACTCGCATGTG 59.601 52.381 0.00 0.00 0.00 3.21
874 905 1.278985 TCCAATCCAGAACTCGCATGT 59.721 47.619 0.00 0.00 0.00 3.21
875 906 2.028420 TCCAATCCAGAACTCGCATG 57.972 50.000 0.00 0.00 0.00 4.06
876 907 2.569059 CATCCAATCCAGAACTCGCAT 58.431 47.619 0.00 0.00 0.00 4.73
877 908 1.407299 CCATCCAATCCAGAACTCGCA 60.407 52.381 0.00 0.00 0.00 5.10
878 909 1.303309 CCATCCAATCCAGAACTCGC 58.697 55.000 0.00 0.00 0.00 5.03
879 910 2.698855 ACCATCCAATCCAGAACTCG 57.301 50.000 0.00 0.00 0.00 4.18
880 911 3.445096 CCAAACCATCCAATCCAGAACTC 59.555 47.826 0.00 0.00 0.00 3.01
881 912 3.075882 TCCAAACCATCCAATCCAGAACT 59.924 43.478 0.00 0.00 0.00 3.01
882 913 3.430453 TCCAAACCATCCAATCCAGAAC 58.570 45.455 0.00 0.00 0.00 3.01
883 914 3.564133 CCTCCAAACCATCCAATCCAGAA 60.564 47.826 0.00 0.00 0.00 3.02
884 915 2.025037 CCTCCAAACCATCCAATCCAGA 60.025 50.000 0.00 0.00 0.00 3.86
885 916 2.025037 TCCTCCAAACCATCCAATCCAG 60.025 50.000 0.00 0.00 0.00 3.86
886 917 1.999295 TCCTCCAAACCATCCAATCCA 59.001 47.619 0.00 0.00 0.00 3.41
887 918 2.826674 TCCTCCAAACCATCCAATCC 57.173 50.000 0.00 0.00 0.00 3.01
888 919 8.477419 TTTATTATCCTCCAAACCATCCAATC 57.523 34.615 0.00 0.00 0.00 2.67
889 920 8.873144 CATTTATTATCCTCCAAACCATCCAAT 58.127 33.333 0.00 0.00 0.00 3.16
890 921 7.201992 GCATTTATTATCCTCCAAACCATCCAA 60.202 37.037 0.00 0.00 0.00 3.53
891 922 6.267471 GCATTTATTATCCTCCAAACCATCCA 59.733 38.462 0.00 0.00 0.00 3.41
892 923 6.494835 AGCATTTATTATCCTCCAAACCATCC 59.505 38.462 0.00 0.00 0.00 3.51
893 924 7.231317 TGAGCATTTATTATCCTCCAAACCATC 59.769 37.037 0.00 0.00 0.00 3.51
894 925 7.068702 TGAGCATTTATTATCCTCCAAACCAT 58.931 34.615 0.00 0.00 0.00 3.55
895 926 6.430864 TGAGCATTTATTATCCTCCAAACCA 58.569 36.000 0.00 0.00 0.00 3.67
896 927 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
932 963 8.204836 GCTTGGATCCAAATACTAAAGAGACTA 58.795 37.037 26.87 0.00 35.33 2.59
933 964 7.051000 GCTTGGATCCAAATACTAAAGAGACT 58.949 38.462 26.87 0.00 35.33 3.24
934 965 6.823689 TGCTTGGATCCAAATACTAAAGAGAC 59.176 38.462 26.87 8.83 35.33 3.36
935 966 6.957631 TGCTTGGATCCAAATACTAAAGAGA 58.042 36.000 26.87 1.15 35.33 3.10
936 967 7.255381 CCATGCTTGGATCCAAATACTAAAGAG 60.255 40.741 26.87 12.80 46.92 2.85
937 968 6.547141 CCATGCTTGGATCCAAATACTAAAGA 59.453 38.462 26.87 1.90 46.92 2.52
938 969 6.239120 CCCATGCTTGGATCCAAATACTAAAG 60.239 42.308 26.87 14.21 46.92 1.85
939 970 5.598005 CCCATGCTTGGATCCAAATACTAAA 59.402 40.000 26.87 8.81 46.92 1.85
940 971 5.139727 CCCATGCTTGGATCCAAATACTAA 58.860 41.667 26.87 10.11 46.92 2.24
941 972 4.167892 ACCCATGCTTGGATCCAAATACTA 59.832 41.667 26.87 12.31 46.92 1.82
942 973 3.052642 ACCCATGCTTGGATCCAAATACT 60.053 43.478 26.87 10.16 46.92 2.12
943 974 3.068590 CACCCATGCTTGGATCCAAATAC 59.931 47.826 26.87 19.00 46.92 1.89
944 975 3.053019 TCACCCATGCTTGGATCCAAATA 60.053 43.478 26.87 18.63 46.92 1.40
945 976 2.112998 CACCCATGCTTGGATCCAAAT 58.887 47.619 26.87 16.27 46.92 2.32
946 977 1.076841 TCACCCATGCTTGGATCCAAA 59.923 47.619 26.87 14.63 46.92 3.28
947 978 0.703488 TCACCCATGCTTGGATCCAA 59.297 50.000 25.53 25.53 46.92 3.53
948 979 0.256752 CTCACCCATGCTTGGATCCA 59.743 55.000 19.85 11.44 46.92 3.41
949 980 0.466922 CCTCACCCATGCTTGGATCC 60.467 60.000 19.85 4.20 46.92 3.36
950 981 1.105759 GCCTCACCCATGCTTGGATC 61.106 60.000 19.85 0.00 46.92 3.36
951 982 1.076485 GCCTCACCCATGCTTGGAT 60.076 57.895 19.85 0.00 46.92 3.41
952 983 0.913934 TAGCCTCACCCATGCTTGGA 60.914 55.000 19.85 0.00 46.92 3.53
953 984 0.465097 CTAGCCTCACCCATGCTTGG 60.465 60.000 11.68 11.68 43.23 3.61
954 985 1.099879 GCTAGCCTCACCCATGCTTG 61.100 60.000 2.29 0.00 36.57 4.01
955 986 1.225704 GCTAGCCTCACCCATGCTT 59.774 57.895 2.29 0.00 36.57 3.91
956 987 1.565390 TTGCTAGCCTCACCCATGCT 61.565 55.000 13.29 0.00 39.10 3.79
957 988 1.077501 TTGCTAGCCTCACCCATGC 60.078 57.895 13.29 0.00 0.00 4.06
958 989 0.254178 ACTTGCTAGCCTCACCCATG 59.746 55.000 13.29 0.00 0.00 3.66
959 990 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
960 991 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
961 992 1.911057 AAAACTTGCTAGCCTCACCC 58.089 50.000 13.29 0.00 0.00 4.61
962 993 3.676093 ACTAAAACTTGCTAGCCTCACC 58.324 45.455 13.29 0.00 0.00 4.02
963 994 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
964 995 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
965 996 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
966 997 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
967 998 2.747989 GTGGGACTAAAACTTGCTAGCC 59.252 50.000 13.29 0.00 0.00 3.93
968 999 3.676093 AGTGGGACTAAAACTTGCTAGC 58.324 45.455 8.10 8.10 0.00 3.42
969 1000 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
970 1001 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
971 1002 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
972 1003 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
973 1004 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
974 1005 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
975 1006 8.026396 TGACTAAAAGTAGTGGGACTAAAACT 57.974 34.615 0.00 0.00 40.82 2.66
976 1007 8.718734 CATGACTAAAAGTAGTGGGACTAAAAC 58.281 37.037 0.00 0.00 40.82 2.43
977 1008 7.881232 CCATGACTAAAAGTAGTGGGACTAAAA 59.119 37.037 0.00 0.00 40.82 1.52
978 1009 7.391620 CCATGACTAAAAGTAGTGGGACTAAA 58.608 38.462 0.00 0.00 40.82 1.85
979 1010 6.942976 CCATGACTAAAAGTAGTGGGACTAA 58.057 40.000 0.00 0.00 40.82 2.24
980 1011 6.540438 CCATGACTAAAAGTAGTGGGACTA 57.460 41.667 0.00 0.00 40.82 2.59
981 1012 5.422214 CCATGACTAAAAGTAGTGGGACT 57.578 43.478 0.00 0.00 40.82 3.85
984 1015 4.514401 GTCCCATGACTAAAAGTAGTGGG 58.486 47.826 17.22 17.22 46.41 4.61
995 1026 5.657745 TGGATACGTTTTAGTCCCATGACTA 59.342 40.000 0.00 0.00 45.97 2.59
997 1028 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
998 1029 5.423704 TTGGATACGTTTTAGTCCCATGA 57.576 39.130 0.00 0.00 42.51 3.07
999 1030 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
1000 1031 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
1001 1032 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
1002 1033 3.373130 GTGCTTGGATACGTTTTAGTCCC 59.627 47.826 0.00 0.00 42.51 4.46
1003 1034 3.373130 GGTGCTTGGATACGTTTTAGTCC 59.627 47.826 0.00 0.00 42.51 3.85
1004 1035 3.373130 GGGTGCTTGGATACGTTTTAGTC 59.627 47.826 0.00 0.00 42.51 2.59
1005 1036 3.008704 AGGGTGCTTGGATACGTTTTAGT 59.991 43.478 0.00 0.00 42.51 2.24
1006 1037 3.606687 AGGGTGCTTGGATACGTTTTAG 58.393 45.455 0.00 0.00 42.51 1.85
1007 1038 3.262405 AGAGGGTGCTTGGATACGTTTTA 59.738 43.478 0.00 0.00 42.51 1.52
1008 1039 2.039879 AGAGGGTGCTTGGATACGTTTT 59.960 45.455 0.00 0.00 42.51 2.43
1009 1040 1.628846 AGAGGGTGCTTGGATACGTTT 59.371 47.619 0.00 0.00 42.51 3.60
1010 1041 1.276622 AGAGGGTGCTTGGATACGTT 58.723 50.000 0.00 0.00 42.51 3.99
1011 1042 2.154567 TAGAGGGTGCTTGGATACGT 57.845 50.000 0.00 0.00 42.51 3.57
1012 1043 2.803492 GCTTAGAGGGTGCTTGGATACG 60.803 54.545 0.00 0.00 42.51 3.06
1013 1044 2.485657 GGCTTAGAGGGTGCTTGGATAC 60.486 54.545 0.00 0.00 0.00 2.24
1014 1045 1.768870 GGCTTAGAGGGTGCTTGGATA 59.231 52.381 0.00 0.00 0.00 2.59
1015 1046 0.548510 GGCTTAGAGGGTGCTTGGAT 59.451 55.000 0.00 0.00 0.00 3.41
1016 1047 0.547712 AGGCTTAGAGGGTGCTTGGA 60.548 55.000 0.00 0.00 0.00 3.53
1017 1048 0.393537 CAGGCTTAGAGGGTGCTTGG 60.394 60.000 0.00 0.00 31.52 3.61
1018 1049 0.615331 TCAGGCTTAGAGGGTGCTTG 59.385 55.000 0.00 0.00 35.54 4.01
1019 1050 0.615850 GTCAGGCTTAGAGGGTGCTT 59.384 55.000 0.00 0.00 0.00 3.91
1020 1051 1.608717 CGTCAGGCTTAGAGGGTGCT 61.609 60.000 0.00 0.00 0.00 4.40
1021 1052 1.153549 CGTCAGGCTTAGAGGGTGC 60.154 63.158 0.00 0.00 0.00 5.01
1022 1053 1.153549 GCGTCAGGCTTAGAGGGTG 60.154 63.158 0.00 0.00 39.11 4.61
1023 1054 2.359967 GGCGTCAGGCTTAGAGGGT 61.360 63.158 0.00 0.00 42.94 4.34
1029 1060 2.678934 AGGACGGCGTCAGGCTTA 60.679 61.111 37.13 0.00 42.94 3.09
1071 1102 2.428071 GTGACGTCGACGGTGGAC 60.428 66.667 37.89 24.28 44.95 4.02
1311 1347 1.092345 GCTGGAGGAGATTGGCGTTC 61.092 60.000 0.00 0.00 0.00 3.95
1479 1515 1.303317 ACGGGGCACACCAATTCTC 60.303 57.895 0.00 0.00 42.91 2.87
1499 1535 1.740380 CGTGCCTGAACATCCGAGATT 60.740 52.381 0.00 0.00 0.00 2.40
1548 1584 2.738846 CACTTTGGTGGTGATCTTCTCG 59.261 50.000 0.00 0.00 39.59 4.04
1584 1620 1.432514 CATCTGACCACCTGAACGTG 58.567 55.000 0.00 0.00 0.00 4.49
1786 1823 5.048434 CCAGTCCATTTTCCTTGAGAAACTC 60.048 44.000 0.00 0.00 44.20 3.01
1827 1864 7.042950 CAATCAGATTGAAAATGGTATGCCAA 58.957 34.615 17.16 0.00 44.68 4.52
1987 2040 3.721035 ACAGCAAAGCATTTTCAAGGTC 58.279 40.909 0.00 0.00 35.03 3.85
2071 2124 5.099042 AGTATACCAGACAACCACCATTC 57.901 43.478 0.00 0.00 0.00 2.67
2214 2267 1.063266 TCCATTGTGGCCCTAAATCCC 60.063 52.381 0.00 0.00 37.47 3.85
2295 2367 7.027874 ACTTAAGACCAATCCCAATGTTCTA 57.972 36.000 10.09 0.00 0.00 2.10
2420 3147 7.058525 TCTCTGTTTGCCATATCTTGATCATT 58.941 34.615 0.00 0.00 0.00 2.57
2568 3298 5.850557 ATGAAAACTGAACACACCAATGA 57.149 34.783 0.00 0.00 0.00 2.57
2621 3351 4.923281 CGATGAAGGAATGTCATACGCATA 59.077 41.667 0.00 0.00 35.84 3.14
2623 3353 3.123050 CGATGAAGGAATGTCATACGCA 58.877 45.455 0.00 0.00 35.84 5.24
2625 3355 3.717707 ACCGATGAAGGAATGTCATACG 58.282 45.455 0.00 0.00 35.84 3.06
2632 3362 1.737236 TGCGAAACCGATGAAGGAATG 59.263 47.619 0.00 0.00 34.73 2.67
2673 3403 2.593346 AGCTAAAGCACCGATGAGAG 57.407 50.000 4.54 0.00 45.16 3.20
2681 3411 4.555262 TGCACAAATAAAGCTAAAGCACC 58.445 39.130 4.54 0.00 45.16 5.01
2718 3448 0.896923 GGGCATGATGGTTTCTGCAA 59.103 50.000 0.00 0.00 36.34 4.08
2739 3469 5.314923 AGCATCGCATAGAAACAATTTGT 57.685 34.783 0.00 0.00 0.00 2.83
2756 3486 4.035558 TGAGCGACAATGGAAATTAGCATC 59.964 41.667 0.00 0.00 0.00 3.91
2789 3519 8.456471 TGAAGAAAAATATCAATCAGCTGAGTG 58.544 33.333 32.76 32.76 41.06 3.51
2845 3575 7.831193 AGCTACAATATCAACAATGGAAACTCT 59.169 33.333 0.00 0.00 0.00 3.24
2934 3665 3.558829 GCAGGTACATCATCAGTCATGTG 59.441 47.826 0.00 0.00 34.92 3.21
2938 3669 4.507710 GAAAGCAGGTACATCATCAGTCA 58.492 43.478 0.00 0.00 0.00 3.41
2941 3672 3.875727 CTGGAAAGCAGGTACATCATCAG 59.124 47.826 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.