Multiple sequence alignment - TraesCS6A01G021100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G021100 chr6A 100.000 2492 0 0 1 2492 10139123 10136632 0.000000e+00 4602.0
1 TraesCS6A01G021100 chr6A 89.104 670 54 11 1609 2266 10066650 10067312 0.000000e+00 815.0
2 TraesCS6A01G021100 chr6A 91.652 563 43 2 984 1542 10065958 10066520 0.000000e+00 776.0
3 TraesCS6A01G021100 chr6A 90.323 155 6 6 554 707 10064432 10064578 7.030000e-46 195.0
4 TraesCS6A01G021100 chr6A 97.917 48 1 0 1 48 592358760 592358713 1.590000e-12 84.2
5 TraesCS6A01G021100 chr6B 87.455 1387 88 48 208 1534 17092484 17091124 0.000000e+00 1519.0
6 TraesCS6A01G021100 chr6B 85.936 1031 75 32 902 1882 16970484 16971494 0.000000e+00 1037.0
7 TraesCS6A01G021100 chr6B 82.788 581 63 19 1901 2465 17003131 17003690 3.730000e-133 484.0
8 TraesCS6A01G021100 chr6B 89.041 292 24 8 1767 2055 17086076 17085790 3.050000e-94 355.0
9 TraesCS6A01G021100 chr6B 84.520 323 30 8 1599 1906 17091029 17090712 4.030000e-78 302.0
10 TraesCS6A01G021100 chr6B 87.739 261 22 3 1599 1859 17002873 17003123 1.870000e-76 296.0
11 TraesCS6A01G021100 chr6B 83.056 301 38 10 1368 1657 17089701 17089403 6.840000e-66 261.0
12 TraesCS6A01G021100 chr6B 86.667 240 20 5 2054 2289 17085552 17085321 3.180000e-64 255.0
13 TraesCS6A01G021100 chr6B 81.620 321 30 12 408 707 16970041 16970353 3.200000e-59 239.0
14 TraesCS6A01G021100 chr6B 92.308 117 9 0 744 860 16970358 16970474 1.530000e-37 167.0
15 TraesCS6A01G021100 chr6D 87.312 1332 87 37 744 2020 9146885 9148189 0.000000e+00 1448.0
16 TraesCS6A01G021100 chr6D 90.741 1080 48 23 561 1599 9196017 9194949 0.000000e+00 1393.0
17 TraesCS6A01G021100 chr6D 88.558 437 35 9 1613 2045 9188552 9188127 1.320000e-142 516.0
18 TraesCS6A01G021100 chr6D 88.649 370 33 4 201 563 9197824 9197457 2.270000e-120 442.0
19 TraesCS6A01G021100 chr6D 85.366 451 25 22 875 1319 9161311 9161726 1.770000e-116 429.0
20 TraesCS6A01G021100 chr6D 82.128 470 35 22 1821 2280 9162975 9163405 8.480000e-95 357.0
21 TraesCS6A01G021100 chr6D 87.662 154 12 4 554 707 9146734 9146880 3.300000e-39 172.0
22 TraesCS6A01G021100 chr6D 93.617 94 3 3 615 707 9161092 9161183 1.200000e-28 137.0
23 TraesCS6A01G021100 chr5D 81.311 915 96 46 875 1757 104143092 104142221 0.000000e+00 673.0
24 TraesCS6A01G021100 chr5D 89.655 493 45 2 1007 1499 104113146 104112660 7.570000e-175 623.0
25 TraesCS6A01G021100 chr5D 97.059 34 1 0 790 823 408538385 408538418 9.630000e-05 58.4
26 TraesCS6A01G021100 chr5B 90.741 486 39 3 1007 1492 113456854 113456375 0.000000e+00 643.0
27 TraesCS6A01G021100 chr5A 80.985 873 96 40 875 1722 94092255 94093082 1.630000e-176 628.0
28 TraesCS6A01G021100 chr3A 93.878 49 3 0 1 49 730807504 730807456 9.560000e-10 75.0
29 TraesCS6A01G021100 chr1A 93.750 48 3 0 1 48 63089883 63089930 3.440000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G021100 chr6A 10136632 10139123 2491 True 4602.000000 4602 100.000000 1 2492 1 chr6A.!!$R1 2491
1 TraesCS6A01G021100 chr6A 10064432 10067312 2880 False 595.333333 815 90.359667 554 2266 3 chr6A.!!$F1 1712
2 TraesCS6A01G021100 chr6B 17085321 17092484 7163 True 538.400000 1519 86.147800 208 2289 5 chr6B.!!$R1 2081
3 TraesCS6A01G021100 chr6B 16970041 16971494 1453 False 481.000000 1037 86.621333 408 1882 3 chr6B.!!$F1 1474
4 TraesCS6A01G021100 chr6B 17002873 17003690 817 False 390.000000 484 85.263500 1599 2465 2 chr6B.!!$F2 866
5 TraesCS6A01G021100 chr6D 9194949 9197824 2875 True 917.500000 1393 89.695000 201 1599 2 chr6D.!!$R2 1398
6 TraesCS6A01G021100 chr6D 9146734 9148189 1455 False 810.000000 1448 87.487000 554 2020 2 chr6D.!!$F1 1466
7 TraesCS6A01G021100 chr6D 9161092 9163405 2313 False 307.666667 429 87.037000 615 2280 3 chr6D.!!$F2 1665
8 TraesCS6A01G021100 chr5D 104142221 104143092 871 True 673.000000 673 81.311000 875 1757 1 chr5D.!!$R2 882
9 TraesCS6A01G021100 chr5A 94092255 94093082 827 False 628.000000 628 80.985000 875 1722 1 chr5A.!!$F1 847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 2208 0.101219 GGTCGGCTTTACGTACGGAT 59.899 55.0 21.06 1.34 34.94 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 10863 0.811616 GAAGCCACTAGGATGCACCG 60.812 60.0 0.0 0.0 44.74 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.076092 CTGGGAGAGCAGGCAAGT 58.924 61.111 0.00 0.00 0.00 3.16
41 42 1.078567 CTGGGAGAGCAGGCAAGTC 60.079 63.158 0.00 0.00 0.00 3.01
42 43 1.537397 TGGGAGAGCAGGCAAGTCT 60.537 57.895 0.00 0.00 0.00 3.24
43 44 1.220477 GGGAGAGCAGGCAAGTCTC 59.780 63.158 0.00 0.00 36.73 3.36
44 45 1.153667 GGAGAGCAGGCAAGTCTCG 60.154 63.158 0.00 0.00 38.09 4.04
45 46 1.589113 GAGAGCAGGCAAGTCTCGT 59.411 57.895 0.00 0.00 32.42 4.18
46 47 0.457681 GAGAGCAGGCAAGTCTCGTC 60.458 60.000 0.00 0.00 32.42 4.20
47 48 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
48 49 2.811317 GCAGGCAAGTCTCGTCCG 60.811 66.667 0.00 0.00 0.00 4.79
49 50 2.125912 CAGGCAAGTCTCGTCCGG 60.126 66.667 0.00 0.00 0.00 5.14
50 51 3.382832 AGGCAAGTCTCGTCCGGG 61.383 66.667 0.00 0.00 0.00 5.73
51 52 4.452733 GGCAAGTCTCGTCCGGGG 62.453 72.222 0.00 0.00 0.00 5.73
52 53 4.452733 GCAAGTCTCGTCCGGGGG 62.453 72.222 0.00 0.00 0.00 5.40
53 54 4.452733 CAAGTCTCGTCCGGGGGC 62.453 72.222 0.00 0.00 0.00 5.80
64 65 4.939368 CGGGGGCGTTGGTTGTCA 62.939 66.667 0.00 0.00 0.00 3.58
65 66 2.983592 GGGGGCGTTGGTTGTCAG 60.984 66.667 0.00 0.00 0.00 3.51
66 67 2.983592 GGGGCGTTGGTTGTCAGG 60.984 66.667 0.00 0.00 0.00 3.86
67 68 2.112297 GGGCGTTGGTTGTCAGGA 59.888 61.111 0.00 0.00 0.00 3.86
68 69 2.258726 GGGCGTTGGTTGTCAGGAC 61.259 63.158 0.00 0.00 0.00 3.85
69 70 2.604174 GGCGTTGGTTGTCAGGACG 61.604 63.158 0.00 0.00 36.85 4.79
70 71 2.935955 CGTTGGTTGTCAGGACGC 59.064 61.111 0.00 0.00 0.00 5.19
71 72 2.935955 GTTGGTTGTCAGGACGCG 59.064 61.111 3.53 3.53 0.00 6.01
72 73 2.280524 TTGGTTGTCAGGACGCGG 60.281 61.111 12.47 0.00 0.00 6.46
73 74 4.980805 TGGTTGTCAGGACGCGGC 62.981 66.667 12.47 7.53 0.00 6.53
74 75 4.980805 GGTTGTCAGGACGCGGCA 62.981 66.667 17.00 0.00 0.00 5.69
75 76 2.970324 GTTGTCAGGACGCGGCAA 60.970 61.111 17.00 0.00 0.00 4.52
76 77 2.970324 TTGTCAGGACGCGGCAAC 60.970 61.111 17.00 9.63 0.00 4.17
88 89 2.359975 GGCAACGACAGGGGGAAG 60.360 66.667 0.00 0.00 0.00 3.46
89 90 2.359975 GCAACGACAGGGGGAAGG 60.360 66.667 0.00 0.00 0.00 3.46
90 91 2.351276 CAACGACAGGGGGAAGGG 59.649 66.667 0.00 0.00 0.00 3.95
91 92 2.206036 AACGACAGGGGGAAGGGA 59.794 61.111 0.00 0.00 0.00 4.20
92 93 1.462627 AACGACAGGGGGAAGGGAA 60.463 57.895 0.00 0.00 0.00 3.97
93 94 1.775934 AACGACAGGGGGAAGGGAAC 61.776 60.000 0.00 0.00 0.00 3.62
118 119 3.584586 TTTTTGAAGCACATGGGCG 57.415 47.368 15.67 0.00 39.27 6.13
119 120 1.035923 TTTTTGAAGCACATGGGCGA 58.964 45.000 15.67 0.00 39.27 5.54
120 121 0.597568 TTTTGAAGCACATGGGCGAG 59.402 50.000 15.67 0.00 39.27 5.03
121 122 1.243342 TTTGAAGCACATGGGCGAGG 61.243 55.000 15.67 0.00 39.27 4.63
122 123 2.123248 TTGAAGCACATGGGCGAGGA 62.123 55.000 15.67 0.00 39.27 3.71
123 124 2.045926 AAGCACATGGGCGAGGAC 60.046 61.111 15.67 0.00 39.27 3.85
124 125 2.527951 GAAGCACATGGGCGAGGACT 62.528 60.000 15.67 0.00 39.27 3.85
125 126 2.809861 AAGCACATGGGCGAGGACTG 62.810 60.000 15.67 0.00 39.27 3.51
126 127 2.981302 CACATGGGCGAGGACTGA 59.019 61.111 0.00 0.00 0.00 3.41
127 128 1.153489 CACATGGGCGAGGACTGAG 60.153 63.158 0.00 0.00 0.00 3.35
128 129 1.305297 ACATGGGCGAGGACTGAGA 60.305 57.895 0.00 0.00 0.00 3.27
129 130 1.326213 ACATGGGCGAGGACTGAGAG 61.326 60.000 0.00 0.00 0.00 3.20
130 131 1.760086 ATGGGCGAGGACTGAGAGG 60.760 63.158 0.00 0.00 0.00 3.69
131 132 2.043852 GGGCGAGGACTGAGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
132 133 2.124693 GGGCGAGGACTGAGAGGAG 61.125 68.421 0.00 0.00 0.00 3.69
133 134 2.124693 GGCGAGGACTGAGAGGAGG 61.125 68.421 0.00 0.00 0.00 4.30
134 135 1.077357 GCGAGGACTGAGAGGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
135 136 1.381165 GCGAGGACTGAGAGGAGGAC 61.381 65.000 0.00 0.00 0.00 3.85
136 137 0.254747 CGAGGACTGAGAGGAGGACT 59.745 60.000 0.00 0.00 0.00 3.85
137 138 1.340600 CGAGGACTGAGAGGAGGACTT 60.341 57.143 0.00 0.00 0.00 3.01
138 139 2.815158 GAGGACTGAGAGGAGGACTTT 58.185 52.381 0.00 0.00 0.00 2.66
139 140 2.758423 GAGGACTGAGAGGAGGACTTTC 59.242 54.545 0.00 0.00 0.00 2.62
140 141 1.828595 GGACTGAGAGGAGGACTTTCC 59.171 57.143 0.00 0.00 37.52 3.13
151 152 3.790089 AGGACTTTCCTTAACTGGTGG 57.210 47.619 0.00 0.00 46.91 4.61
152 153 2.160205 GGACTTTCCTTAACTGGTGGC 58.840 52.381 0.00 0.00 32.53 5.01
153 154 2.160205 GACTTTCCTTAACTGGTGGCC 58.840 52.381 0.00 0.00 0.00 5.36
154 155 1.497286 ACTTTCCTTAACTGGTGGCCA 59.503 47.619 0.00 0.00 0.00 5.36
155 156 1.886542 CTTTCCTTAACTGGTGGCCAC 59.113 52.381 28.57 28.57 0.00 5.01
156 157 0.250553 TTCCTTAACTGGTGGCCACG 60.251 55.000 29.08 18.82 0.00 4.94
157 158 1.122632 TCCTTAACTGGTGGCCACGA 61.123 55.000 29.08 24.75 0.00 4.35
158 159 0.673644 CCTTAACTGGTGGCCACGAG 60.674 60.000 37.55 37.55 41.98 4.18
159 160 0.320374 CTTAACTGGTGGCCACGAGA 59.680 55.000 43.26 25.94 39.15 4.04
160 161 0.981183 TTAACTGGTGGCCACGAGAT 59.019 50.000 43.26 35.97 39.15 2.75
161 162 0.249120 TAACTGGTGGCCACGAGATG 59.751 55.000 43.26 25.29 39.15 2.90
162 163 2.821366 CTGGTGGCCACGAGATGC 60.821 66.667 36.84 19.75 39.15 3.91
200 201 4.919653 CTGTGTAGCAGCGTCCAT 57.080 55.556 0.00 0.00 38.52 3.41
202 203 2.515926 CTGTGTAGCAGCGTCCATAT 57.484 50.000 0.00 0.00 38.52 1.78
203 204 2.826428 CTGTGTAGCAGCGTCCATATT 58.174 47.619 0.00 0.00 38.52 1.28
204 205 3.198068 CTGTGTAGCAGCGTCCATATTT 58.802 45.455 0.00 0.00 38.52 1.40
205 206 3.605634 TGTGTAGCAGCGTCCATATTTT 58.394 40.909 0.00 0.00 0.00 1.82
206 207 4.006989 TGTGTAGCAGCGTCCATATTTTT 58.993 39.130 0.00 0.00 0.00 1.94
275 277 1.775385 AGGAACCAAACACACCCAAG 58.225 50.000 0.00 0.00 0.00 3.61
278 280 3.139397 AGGAACCAAACACACCCAAGATA 59.861 43.478 0.00 0.00 0.00 1.98
289 299 5.661312 ACACACCCAAGATAGCTAGATGTTA 59.339 40.000 0.00 0.00 0.00 2.41
294 304 8.367911 CACCCAAGATAGCTAGATGTTATTACA 58.632 37.037 0.00 0.00 38.95 2.41
323 333 9.321562 TCTAATTTTGTAATCTCGTGGGATAAC 57.678 33.333 0.00 0.00 0.00 1.89
346 358 5.657302 ACGATCCTCCACAGTTTATTCTAGT 59.343 40.000 0.00 0.00 0.00 2.57
359 371 9.370126 CAGTTTATTCTAGTTGAACTTGTTTCG 57.630 33.333 1.97 0.00 37.52 3.46
455 475 6.096423 ACACTATTCGTTGCTCCATCTACTAA 59.904 38.462 0.00 0.00 0.00 2.24
494 515 2.514824 GCCAGGAATCACCGGAGC 60.515 66.667 9.46 0.00 44.74 4.70
531 552 1.796796 GTCGCATCAGGCAAAGGAC 59.203 57.895 0.00 0.00 45.17 3.85
607 2075 3.621715 GGATCGATCGGTAAACAAAAGCT 59.378 43.478 18.81 0.00 0.00 3.74
608 2076 4.807304 GGATCGATCGGTAAACAAAAGCTA 59.193 41.667 18.81 0.00 0.00 3.32
609 2077 5.276726 GGATCGATCGGTAAACAAAAGCTAC 60.277 44.000 18.81 0.00 0.00 3.58
610 2078 3.609373 TCGATCGGTAAACAAAAGCTACG 59.391 43.478 16.41 0.00 0.00 3.51
713 2208 0.101219 GGTCGGCTTTACGTACGGAT 59.899 55.000 21.06 1.34 34.94 4.18
853 2352 1.705337 ATCGATCGGCGCCAAACTTG 61.705 55.000 28.98 9.08 40.61 3.16
871 2384 2.721274 TGTGGCGTCCAAAATGAATG 57.279 45.000 0.00 0.00 34.18 2.67
941 3597 3.511146 CCACAACAGCCATAAACCTCAAT 59.489 43.478 0.00 0.00 0.00 2.57
962 3621 4.569180 AACCAGTGCGTGCCAGCT 62.569 61.111 2.25 0.00 38.13 4.24
963 3622 4.996434 ACCAGTGCGTGCCAGCTC 62.996 66.667 2.25 0.00 38.13 4.09
1188 3884 2.436824 GAGCTCTTCCCCAACGGC 60.437 66.667 6.43 0.00 0.00 5.68
1338 4806 2.581354 GACCAGGCGAGCATGTCT 59.419 61.111 8.91 0.00 0.00 3.41
1549 5066 4.317980 GCACTTACTAGCTACTACTCGTCG 60.318 50.000 0.00 0.00 0.00 5.12
1597 5122 5.675323 GCCGGTTAATCTTATTGTGTGTTCC 60.675 44.000 1.90 0.00 0.00 3.62
1606 5131 0.108281 TTGTGTGTTCCGTTCCGACA 60.108 50.000 0.00 0.00 0.00 4.35
1627 5224 0.311790 GGTTGTACCGTCGTCAGTCA 59.688 55.000 0.00 0.00 0.00 3.41
1684 5311 9.517609 CTGTATTTTGTGGTACTAGAGTGTATC 57.482 37.037 0.00 0.00 0.00 2.24
1757 5409 8.582657 AAGTATATGTAATGGCGAGTCTAGAT 57.417 34.615 0.00 0.00 0.00 1.98
1835 5495 2.472816 GCAGCAGCTTTGCTTTGTTTA 58.527 42.857 11.74 0.00 43.52 2.01
1862 5522 3.735029 GCCAGTGAGCTGCAGCAC 61.735 66.667 38.24 32.47 45.16 4.40
1870 5530 1.077930 AGCTGCAGCACCAATCGAT 60.078 52.632 38.24 13.55 45.16 3.59
1911 5572 5.851720 ACTATTCATGTGATGAGCCTACAG 58.148 41.667 0.00 0.00 40.94 2.74
1912 5573 3.548745 TTCATGTGATGAGCCTACAGG 57.451 47.619 0.00 0.00 40.94 4.00
1920 10355 1.198759 TGAGCCTACAGGGGGTGTTC 61.199 60.000 0.00 0.00 40.94 3.18
1981 10420 8.295288 CAGTGATTGCTAAAGTTTGAGAGAAAT 58.705 33.333 0.00 0.00 0.00 2.17
2047 10487 5.279910 CCTCATGGGATTCTAGGAGAACATC 60.280 48.000 0.00 0.00 37.00 3.06
2074 10753 0.821711 TGTGGCGCCTTTTGTAAGCT 60.822 50.000 29.70 0.00 0.00 3.74
2075 10754 1.161843 GTGGCGCCTTTTGTAAGCTA 58.838 50.000 29.70 0.00 0.00 3.32
2076 10755 1.538075 GTGGCGCCTTTTGTAAGCTAA 59.462 47.619 29.70 0.00 0.00 3.09
2077 10756 2.163613 GTGGCGCCTTTTGTAAGCTAAT 59.836 45.455 29.70 0.00 0.00 1.73
2110 10796 7.862873 GGGATATTGAAGTAATTGTGCTTTAGC 59.137 37.037 0.00 0.00 42.50 3.09
2120 10807 8.462016 AGTAATTGTGCTTTAGCTATTCCTTTG 58.538 33.333 3.10 0.00 42.66 2.77
2173 10863 0.036388 TGGATCCAAGACAAGCGTCC 60.036 55.000 13.46 0.00 43.73 4.79
2203 10893 2.979676 TGGCTTCGTTGCTGCAGG 60.980 61.111 17.12 0.00 0.00 4.85
2224 10919 1.979855 TCACTTTGGTGGTCATGGTG 58.020 50.000 0.00 0.00 43.17 4.17
2235 10930 3.758554 GTGGTCATGGTGCTGATACTTTT 59.241 43.478 0.00 0.00 0.00 2.27
2255 10950 4.704833 TCGGAACCTGCAGCTGGC 62.705 66.667 17.12 8.54 45.13 4.85
2258 10953 2.282745 GAACCTGCAGCTGGCCTT 60.283 61.111 17.12 6.08 43.89 4.35
2294 10989 2.688507 AGGAAGTCATGTTACACAGCG 58.311 47.619 0.00 0.00 0.00 5.18
2295 10990 1.128692 GGAAGTCATGTTACACAGCGC 59.871 52.381 0.00 0.00 0.00 5.92
2296 10991 2.069273 GAAGTCATGTTACACAGCGCT 58.931 47.619 2.64 2.64 0.00 5.92
2299 10994 1.531149 GTCATGTTACACAGCGCTTGT 59.469 47.619 22.53 22.53 41.94 3.16
2301 10996 3.185594 GTCATGTTACACAGCGCTTGTTA 59.814 43.478 23.58 15.51 38.16 2.41
2316 11011 6.311690 AGCGCTTGTTAAGATAAGAGTTTCTC 59.688 38.462 2.64 0.00 0.00 2.87
2321 11016 9.454859 CTTGTTAAGATAAGAGTTTCTCCCAAT 57.545 33.333 0.00 0.00 0.00 3.16
2324 11019 9.549078 GTTAAGATAAGAGTTTCTCCCAATAGG 57.451 37.037 0.00 0.00 0.00 2.57
2326 11021 8.855804 AAGATAAGAGTTTCTCCCAATAGGTA 57.144 34.615 0.00 0.00 36.75 3.08
2330 11025 6.893020 AGAGTTTCTCCCAATAGGTATGTT 57.107 37.500 0.00 0.00 36.75 2.71
2343 11038 4.473477 AGGTATGTTGGAGTACTGCTTC 57.527 45.455 15.92 8.85 0.00 3.86
2350 11045 4.283467 TGTTGGAGTACTGCTTCACATACT 59.717 41.667 15.92 0.00 31.02 2.12
2352 11047 5.073311 TGGAGTACTGCTTCACATACTTC 57.927 43.478 15.92 0.00 0.00 3.01
2366 11061 6.409704 TCACATACTTCTCTTTAGCAGCAAT 58.590 36.000 0.00 0.00 0.00 3.56
2367 11062 7.555965 TCACATACTTCTCTTTAGCAGCAATA 58.444 34.615 0.00 0.00 0.00 1.90
2372 11067 7.693969 ACTTCTCTTTAGCAGCAATACAATT 57.306 32.000 0.00 0.00 0.00 2.32
2374 11069 6.683974 TCTCTTTAGCAGCAATACAATTCC 57.316 37.500 0.00 0.00 0.00 3.01
2399 11094 6.394809 GGTGTCCGAAAATTAATGTGGAAAT 58.605 36.000 0.00 0.00 0.00 2.17
2417 11123 2.267174 ATGGTATGGCAGCATGTCTC 57.733 50.000 0.00 0.00 44.57 3.36
2422 11128 1.201424 ATGGCAGCATGTCTCTGAGA 58.799 50.000 2.58 2.58 44.57 3.27
2426 11132 1.810794 GCAGCATGTCTCTGAGATGGG 60.811 57.143 11.07 4.56 39.31 4.00
2427 11133 1.761198 CAGCATGTCTCTGAGATGGGA 59.239 52.381 11.07 0.00 34.49 4.37
2428 11134 2.040939 AGCATGTCTCTGAGATGGGAG 58.959 52.381 11.07 1.52 34.49 4.30
2429 11135 1.761784 GCATGTCTCTGAGATGGGAGT 59.238 52.381 11.07 0.00 34.49 3.85
2430 11136 2.961741 GCATGTCTCTGAGATGGGAGTA 59.038 50.000 11.07 0.00 34.49 2.59
2431 11137 3.577848 GCATGTCTCTGAGATGGGAGTAT 59.422 47.826 11.07 0.00 34.49 2.12
2432 11138 4.769488 GCATGTCTCTGAGATGGGAGTATA 59.231 45.833 11.07 0.00 34.49 1.47
2433 11139 5.421693 GCATGTCTCTGAGATGGGAGTATAT 59.578 44.000 11.07 0.00 34.49 0.86
2437 11143 7.301420 TGTCTCTGAGATGGGAGTATATTTCT 58.699 38.462 11.07 0.00 0.00 2.52
2439 11145 7.232534 GTCTCTGAGATGGGAGTATATTTCTGT 59.767 40.741 11.07 0.00 0.00 3.41
2441 11147 7.957002 TCTGAGATGGGAGTATATTTCTGTTC 58.043 38.462 0.00 0.00 0.00 3.18
2465 11171 9.807649 TTCTGTTTATTTAGTAAGGTCGGTATC 57.192 33.333 0.00 0.00 0.00 2.24
2466 11172 8.970020 TCTGTTTATTTAGTAAGGTCGGTATCA 58.030 33.333 0.00 0.00 0.00 2.15
2467 11173 9.590451 CTGTTTATTTAGTAAGGTCGGTATCAA 57.410 33.333 0.00 0.00 0.00 2.57
2468 11174 9.941325 TGTTTATTTAGTAAGGTCGGTATCAAA 57.059 29.630 0.00 0.00 0.00 2.69
2470 11176 9.941325 TTTATTTAGTAAGGTCGGTATCAAACA 57.059 29.630 0.00 0.00 0.00 2.83
2474 11180 9.537192 TTTAGTAAGGTCGGTATCAAACATATG 57.463 33.333 0.00 0.00 0.00 1.78
2475 11181 7.356089 AGTAAGGTCGGTATCAAACATATGA 57.644 36.000 10.38 0.00 0.00 2.15
2476 11182 7.963532 AGTAAGGTCGGTATCAAACATATGAT 58.036 34.615 10.38 0.00 42.52 2.45
2477 11183 8.088981 AGTAAGGTCGGTATCAAACATATGATC 58.911 37.037 10.38 0.00 40.44 2.92
2478 11184 6.672266 AGGTCGGTATCAAACATATGATCT 57.328 37.500 10.38 0.00 40.44 2.75
2479 11185 6.459066 AGGTCGGTATCAAACATATGATCTG 58.541 40.000 10.38 3.58 40.44 2.90
2480 11186 5.639506 GGTCGGTATCAAACATATGATCTGG 59.360 44.000 10.38 0.00 40.44 3.86
2481 11187 6.223852 GTCGGTATCAAACATATGATCTGGT 58.776 40.000 10.38 2.33 40.44 4.00
2482 11188 7.375834 GTCGGTATCAAACATATGATCTGGTA 58.624 38.462 10.38 1.37 40.44 3.25
2483 11189 7.542477 GTCGGTATCAAACATATGATCTGGTAG 59.458 40.741 10.38 0.00 40.44 3.18
2484 11190 6.813649 CGGTATCAAACATATGATCTGGTAGG 59.186 42.308 10.38 0.00 40.44 3.18
2485 11191 6.595716 GGTATCAAACATATGATCTGGTAGGC 59.404 42.308 10.38 0.00 40.44 3.93
2486 11192 5.628797 TCAAACATATGATCTGGTAGGCA 57.371 39.130 10.38 0.00 0.00 4.75
2487 11193 6.191657 TCAAACATATGATCTGGTAGGCAT 57.808 37.500 10.38 0.00 0.00 4.40
2488 11194 5.999600 TCAAACATATGATCTGGTAGGCATG 59.000 40.000 10.38 0.00 0.00 4.06
2489 11195 5.830799 AACATATGATCTGGTAGGCATGA 57.169 39.130 10.38 0.00 0.00 3.07
2490 11196 6.384342 AACATATGATCTGGTAGGCATGAT 57.616 37.500 10.38 0.00 0.00 2.45
2491 11197 5.742063 ACATATGATCTGGTAGGCATGATG 58.258 41.667 10.38 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.078567 GACTTGCCTGCTCTCCCAG 60.079 63.158 0.00 0.00 0.00 4.45
24 25 1.537397 AGACTTGCCTGCTCTCCCA 60.537 57.895 0.00 0.00 0.00 4.37
25 26 1.220477 GAGACTTGCCTGCTCTCCC 59.780 63.158 0.00 0.00 0.00 4.30
26 27 1.153667 CGAGACTTGCCTGCTCTCC 60.154 63.158 0.00 0.00 0.00 3.71
27 28 0.457681 GACGAGACTTGCCTGCTCTC 60.458 60.000 0.00 0.00 0.00 3.20
28 29 1.589113 GACGAGACTTGCCTGCTCT 59.411 57.895 0.00 0.00 0.00 4.09
29 30 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
30 31 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
31 32 2.811317 CGGACGAGACTTGCCTGC 60.811 66.667 0.00 0.00 0.00 4.85
32 33 2.125912 CCGGACGAGACTTGCCTG 60.126 66.667 0.00 0.00 0.00 4.85
33 34 3.382832 CCCGGACGAGACTTGCCT 61.383 66.667 0.73 0.00 0.00 4.75
34 35 4.452733 CCCCGGACGAGACTTGCC 62.453 72.222 0.73 0.00 0.00 4.52
35 36 4.452733 CCCCCGGACGAGACTTGC 62.453 72.222 0.73 0.00 0.00 4.01
36 37 4.452733 GCCCCCGGACGAGACTTG 62.453 72.222 0.73 0.00 0.00 3.16
47 48 4.939368 TGACAACCAACGCCCCCG 62.939 66.667 0.00 0.00 41.14 5.73
48 49 2.983592 CTGACAACCAACGCCCCC 60.984 66.667 0.00 0.00 0.00 5.40
49 50 2.983592 CCTGACAACCAACGCCCC 60.984 66.667 0.00 0.00 0.00 5.80
50 51 2.112297 TCCTGACAACCAACGCCC 59.888 61.111 0.00 0.00 0.00 6.13
51 52 2.604174 CGTCCTGACAACCAACGCC 61.604 63.158 0.00 0.00 0.00 5.68
52 53 2.935955 CGTCCTGACAACCAACGC 59.064 61.111 0.00 0.00 0.00 4.84
53 54 2.935955 GCGTCCTGACAACCAACG 59.064 61.111 0.00 0.00 36.48 4.10
54 55 2.604174 CCGCGTCCTGACAACCAAC 61.604 63.158 4.92 0.00 0.00 3.77
55 56 2.280524 CCGCGTCCTGACAACCAA 60.281 61.111 4.92 0.00 0.00 3.67
56 57 4.980805 GCCGCGTCCTGACAACCA 62.981 66.667 4.92 0.00 0.00 3.67
57 58 4.980805 TGCCGCGTCCTGACAACC 62.981 66.667 4.92 0.00 0.00 3.77
58 59 2.970324 TTGCCGCGTCCTGACAAC 60.970 61.111 4.92 0.00 0.00 3.32
59 60 2.970324 GTTGCCGCGTCCTGACAA 60.970 61.111 4.92 0.00 0.00 3.18
70 71 4.323477 TTCCCCCTGTCGTTGCCG 62.323 66.667 0.00 0.00 0.00 5.69
71 72 2.359975 CTTCCCCCTGTCGTTGCC 60.360 66.667 0.00 0.00 0.00 4.52
72 73 2.359975 CCTTCCCCCTGTCGTTGC 60.360 66.667 0.00 0.00 0.00 4.17
73 74 1.774894 TTCCCTTCCCCCTGTCGTTG 61.775 60.000 0.00 0.00 0.00 4.10
74 75 1.462627 TTCCCTTCCCCCTGTCGTT 60.463 57.895 0.00 0.00 0.00 3.85
75 76 2.206036 TTCCCTTCCCCCTGTCGT 59.794 61.111 0.00 0.00 0.00 4.34
76 77 2.669240 GTTCCCTTCCCCCTGTCG 59.331 66.667 0.00 0.00 0.00 4.35
77 78 0.253020 TAGGTTCCCTTCCCCCTGTC 60.253 60.000 0.00 0.00 34.61 3.51
78 79 0.549413 GTAGGTTCCCTTCCCCCTGT 60.549 60.000 0.00 0.00 34.61 4.00
79 80 1.279749 GGTAGGTTCCCTTCCCCCTG 61.280 65.000 0.00 0.00 35.40 4.45
80 81 1.084273 GGTAGGTTCCCTTCCCCCT 59.916 63.158 0.00 0.00 35.40 4.79
81 82 0.551871 AAGGTAGGTTCCCTTCCCCC 60.552 60.000 2.62 0.00 41.27 5.40
82 83 1.379776 AAAGGTAGGTTCCCTTCCCC 58.620 55.000 2.62 0.00 41.27 4.81
83 84 3.537795 AAAAAGGTAGGTTCCCTTCCC 57.462 47.619 2.62 0.00 41.27 3.97
100 101 1.000385 CTCGCCCATGTGCTTCAAAAA 60.000 47.619 0.00 0.00 0.00 1.94
101 102 0.597568 CTCGCCCATGTGCTTCAAAA 59.402 50.000 0.00 0.00 0.00 2.44
102 103 1.243342 CCTCGCCCATGTGCTTCAAA 61.243 55.000 0.00 0.00 0.00 2.69
103 104 1.675310 CCTCGCCCATGTGCTTCAA 60.675 57.895 0.00 0.00 0.00 2.69
104 105 2.046023 CCTCGCCCATGTGCTTCA 60.046 61.111 0.00 0.00 0.00 3.02
105 106 2.109126 GTCCTCGCCCATGTGCTTC 61.109 63.158 0.00 0.00 0.00 3.86
106 107 2.045926 GTCCTCGCCCATGTGCTT 60.046 61.111 0.00 0.00 0.00 3.91
107 108 3.005539 AGTCCTCGCCCATGTGCT 61.006 61.111 0.00 0.00 0.00 4.40
108 109 2.821366 CAGTCCTCGCCCATGTGC 60.821 66.667 0.00 0.00 0.00 4.57
109 110 1.153489 CTCAGTCCTCGCCCATGTG 60.153 63.158 0.00 0.00 0.00 3.21
110 111 1.305297 TCTCAGTCCTCGCCCATGT 60.305 57.895 0.00 0.00 0.00 3.21
111 112 1.440893 CTCTCAGTCCTCGCCCATG 59.559 63.158 0.00 0.00 0.00 3.66
112 113 1.760086 CCTCTCAGTCCTCGCCCAT 60.760 63.158 0.00 0.00 0.00 4.00
113 114 2.363018 CCTCTCAGTCCTCGCCCA 60.363 66.667 0.00 0.00 0.00 5.36
114 115 2.043852 TCCTCTCAGTCCTCGCCC 60.044 66.667 0.00 0.00 0.00 6.13
115 116 2.124693 CCTCCTCTCAGTCCTCGCC 61.125 68.421 0.00 0.00 0.00 5.54
116 117 1.077357 TCCTCCTCTCAGTCCTCGC 60.077 63.158 0.00 0.00 0.00 5.03
117 118 0.254747 AGTCCTCCTCTCAGTCCTCG 59.745 60.000 0.00 0.00 0.00 4.63
118 119 2.525105 AAGTCCTCCTCTCAGTCCTC 57.475 55.000 0.00 0.00 0.00 3.71
119 120 2.558800 GGAAAGTCCTCCTCTCAGTCCT 60.559 54.545 0.00 0.00 32.53 3.85
120 121 1.828595 GGAAAGTCCTCCTCTCAGTCC 59.171 57.143 0.00 0.00 32.53 3.85
121 122 2.815158 AGGAAAGTCCTCCTCTCAGTC 58.185 52.381 0.00 0.00 45.66 3.51
132 133 2.160205 GCCACCAGTTAAGGAAAGTCC 58.840 52.381 0.00 0.00 36.58 3.85
133 134 2.160205 GGCCACCAGTTAAGGAAAGTC 58.840 52.381 0.00 0.00 0.00 3.01
134 135 1.497286 TGGCCACCAGTTAAGGAAAGT 59.503 47.619 0.00 0.00 0.00 2.66
135 136 1.886542 GTGGCCACCAGTTAAGGAAAG 59.113 52.381 26.31 0.00 32.34 2.62
136 137 1.816183 CGTGGCCACCAGTTAAGGAAA 60.816 52.381 29.95 0.00 32.34 3.13
137 138 0.250553 CGTGGCCACCAGTTAAGGAA 60.251 55.000 29.95 0.00 32.34 3.36
138 139 1.122632 TCGTGGCCACCAGTTAAGGA 61.123 55.000 29.95 15.52 32.34 3.36
139 140 0.673644 CTCGTGGCCACCAGTTAAGG 60.674 60.000 29.95 13.32 32.34 2.69
140 141 0.320374 TCTCGTGGCCACCAGTTAAG 59.680 55.000 29.95 14.08 32.34 1.85
141 142 0.981183 ATCTCGTGGCCACCAGTTAA 59.019 50.000 29.95 11.53 32.34 2.01
142 143 0.249120 CATCTCGTGGCCACCAGTTA 59.751 55.000 29.95 12.30 32.34 2.24
143 144 1.003355 CATCTCGTGGCCACCAGTT 60.003 57.895 29.95 18.75 32.34 3.16
144 145 2.665000 CATCTCGTGGCCACCAGT 59.335 61.111 29.95 14.19 32.34 4.00
145 146 2.821366 GCATCTCGTGGCCACCAG 60.821 66.667 29.95 26.54 32.34 4.00
146 147 4.758251 CGCATCTCGTGGCCACCA 62.758 66.667 29.95 17.50 0.00 4.17
184 185 2.979814 AATATGGACGCTGCTACACA 57.020 45.000 0.00 0.00 0.00 3.72
185 186 4.142687 ACAAAAATATGGACGCTGCTACAC 60.143 41.667 0.00 0.00 0.00 2.90
186 187 4.006989 ACAAAAATATGGACGCTGCTACA 58.993 39.130 0.00 0.00 0.00 2.74
187 188 4.616181 ACAAAAATATGGACGCTGCTAC 57.384 40.909 0.00 0.00 0.00 3.58
188 189 5.065474 GGTAACAAAAATATGGACGCTGCTA 59.935 40.000 0.00 0.00 0.00 3.49
189 190 4.142469 GGTAACAAAAATATGGACGCTGCT 60.142 41.667 0.00 0.00 0.00 4.24
190 191 4.102649 GGTAACAAAAATATGGACGCTGC 58.897 43.478 0.00 0.00 0.00 5.25
255 257 2.510382 TCTTGGGTGTGTTTGGTTCCTA 59.490 45.455 0.00 0.00 0.00 2.94
294 304 7.391620 TCCCACGAGATTACAAAATTAGACTT 58.608 34.615 0.00 0.00 0.00 3.01
323 333 6.150396 ACTAGAATAAACTGTGGAGGATCG 57.850 41.667 0.00 0.00 34.37 3.69
330 342 8.154649 ACAAGTTCAACTAGAATAAACTGTGG 57.845 34.615 0.00 0.00 38.76 4.17
414 432 8.895737 ACGAATAGTGTTTTTCTTTTCACCTTA 58.104 29.630 0.00 0.00 0.00 2.69
415 433 7.768240 ACGAATAGTGTTTTTCTTTTCACCTT 58.232 30.769 0.00 0.00 0.00 3.50
425 444 5.103290 TGGAGCAACGAATAGTGTTTTTC 57.897 39.130 0.00 0.00 0.00 2.29
455 475 7.271511 TGGCTGTTACATCAAAAGTTCAAAAT 58.728 30.769 0.00 0.00 0.00 1.82
476 496 3.036429 GCTCCGGTGATTCCTGGCT 62.036 63.158 7.92 0.00 32.60 4.75
531 552 1.191489 AGGGAATTTGGGCCGTTTGG 61.191 55.000 0.00 0.00 38.77 3.28
853 2352 2.867429 CTCATTCATTTTGGACGCCAC 58.133 47.619 0.00 0.00 30.78 5.01
871 2384 1.452145 TTTGGCACCAAGGTTCGCTC 61.452 55.000 1.79 0.00 37.24 5.03
941 3597 2.904866 GGCACGCACTGGTTTGGA 60.905 61.111 0.00 0.00 0.00 3.53
962 3621 1.354705 TGTCGAGGAAGGAGAAGAGGA 59.645 52.381 0.00 0.00 0.00 3.71
963 3622 1.474879 GTGTCGAGGAAGGAGAAGAGG 59.525 57.143 0.00 0.00 0.00 3.69
1010 3697 2.935481 CCAGGGGCTTGGAGGACA 60.935 66.667 2.93 0.00 40.87 4.02
1172 3868 2.930562 AGCCGTTGGGGAAGAGCT 60.931 61.111 0.00 0.00 38.47 4.09
1499 4975 0.969409 AGCTAGGTTCGTAGGCGGTT 60.969 55.000 0.00 0.00 38.89 4.44
1597 5122 1.142474 GGTACAACCTTGTCGGAACG 58.858 55.000 0.00 0.00 45.27 3.95
1606 5131 1.000938 GACTGACGACGGTACAACCTT 60.001 52.381 0.00 0.00 35.66 3.50
1627 5224 7.769044 AGTTAAACTGCAAATCCGATAGTACAT 59.231 33.333 0.00 0.00 0.00 2.29
1676 5299 7.601886 CCCTCTGATTAATCATGTGATACACTC 59.398 40.741 18.26 0.00 36.02 3.51
1684 5311 6.604795 AGGTTTTCCCTCTGATTAATCATGTG 59.395 38.462 18.26 12.36 40.71 3.21
1731 5372 8.041829 TCTAGACTCGCCATTACATATACTTC 57.958 38.462 0.00 0.00 0.00 3.01
1757 5409 5.351458 CGATGAAGGAATCTCACACACATA 58.649 41.667 0.00 0.00 0.00 2.29
1835 5495 1.414181 AGCTCACTGGCATATAAGCGT 59.586 47.619 0.00 0.00 34.99 5.07
1862 5522 4.033990 TCAAGTCTCTTCGATCGATTGG 57.966 45.455 20.18 12.21 0.00 3.16
1870 5530 6.152831 TGAATAGTTCCATCAAGTCTCTTCGA 59.847 38.462 0.00 0.00 0.00 3.71
1911 5572 2.962421 TGATTTGTGAAAGAACACCCCC 59.038 45.455 0.00 0.00 39.69 5.40
1912 5573 3.636764 AGTGATTTGTGAAAGAACACCCC 59.363 43.478 0.00 0.00 39.69 4.95
1949 10388 7.164122 TCAAACTTTAGCAATCACTGATCTCT 58.836 34.615 0.00 0.00 0.00 3.10
1950 10389 7.332926 TCTCAAACTTTAGCAATCACTGATCTC 59.667 37.037 0.00 0.00 0.00 2.75
1981 10420 4.399618 TCATCGGGAAACAACAAAAGAACA 59.600 37.500 0.00 0.00 0.00 3.18
2024 10464 5.279910 GGATGTTCTCCTAGAATCCCATGAG 60.280 48.000 0.00 0.00 41.29 2.90
2041 10481 2.095567 GCGCCACATATGATGGATGTTC 60.096 50.000 21.45 7.98 39.87 3.18
2047 10487 1.321474 AAAGGCGCCACATATGATGG 58.679 50.000 31.54 13.87 40.50 3.51
2050 10490 1.832883 ACAAAAGGCGCCACATATGA 58.167 45.000 31.54 0.00 0.00 2.15
2076 10755 9.646522 ACAATTACTTCAATATCCCAGCTTAAT 57.353 29.630 0.00 0.00 0.00 1.40
2077 10756 8.902806 CACAATTACTTCAATATCCCAGCTTAA 58.097 33.333 0.00 0.00 0.00 1.85
2146 10833 4.276926 GCTTGTCTTGGATCCATCATAACC 59.723 45.833 17.06 0.00 0.00 2.85
2150 10837 2.092753 ACGCTTGTCTTGGATCCATCAT 60.093 45.455 17.06 0.00 0.00 2.45
2173 10863 0.811616 GAAGCCACTAGGATGCACCG 60.812 60.000 0.00 0.00 44.74 4.94
2224 10919 3.751698 AGGTTCCGAACAAAAGTATCAGC 59.248 43.478 13.23 0.00 0.00 4.26
2235 10930 1.597854 CAGCTGCAGGTTCCGAACA 60.598 57.895 17.45 0.00 0.00 3.18
2255 10950 3.077359 CCTTCCAACTGCTTAGACAAGG 58.923 50.000 0.00 0.00 31.96 3.61
2258 10953 3.391296 ACTTCCTTCCAACTGCTTAGACA 59.609 43.478 0.00 0.00 0.00 3.41
2294 10989 6.879458 TGGGAGAAACTCTTATCTTAACAAGC 59.121 38.462 0.00 0.00 0.00 4.01
2295 10990 8.848474 TTGGGAGAAACTCTTATCTTAACAAG 57.152 34.615 0.00 0.00 0.00 3.16
2299 10994 9.280456 ACCTATTGGGAGAAACTCTTATCTTAA 57.720 33.333 0.00 0.00 38.76 1.85
2301 10996 7.757242 ACCTATTGGGAGAAACTCTTATCTT 57.243 36.000 0.00 0.00 38.76 2.40
2316 11011 5.611374 CAGTACTCCAACATACCTATTGGG 58.389 45.833 0.00 0.00 44.72 4.12
2321 11016 5.020795 TGAAGCAGTACTCCAACATACCTA 58.979 41.667 0.00 0.00 0.00 3.08
2322 11017 3.838317 TGAAGCAGTACTCCAACATACCT 59.162 43.478 0.00 0.00 0.00 3.08
2324 11019 4.566004 TGTGAAGCAGTACTCCAACATAC 58.434 43.478 0.00 0.00 0.00 2.39
2326 11021 3.769739 TGTGAAGCAGTACTCCAACAT 57.230 42.857 0.00 0.00 0.00 2.71
2330 11025 4.772624 AGAAGTATGTGAAGCAGTACTCCA 59.227 41.667 0.00 0.00 0.00 3.86
2340 11035 5.871524 TGCTGCTAAAGAGAAGTATGTGAAG 59.128 40.000 0.00 0.00 29.68 3.02
2343 11038 6.674694 ATTGCTGCTAAAGAGAAGTATGTG 57.325 37.500 0.00 0.00 29.68 3.21
2350 11045 6.183360 CGGAATTGTATTGCTGCTAAAGAGAA 60.183 38.462 0.00 0.00 0.00 2.87
2352 11047 5.504665 CCGGAATTGTATTGCTGCTAAAGAG 60.505 44.000 0.00 0.00 0.00 2.85
2366 11061 3.123157 TTTTCGGACACCGGAATTGTA 57.877 42.857 9.46 0.00 44.56 2.41
2367 11062 1.970092 TTTTCGGACACCGGAATTGT 58.030 45.000 9.46 0.69 44.56 2.71
2383 11078 7.628234 TGCCATACCATTTCCACATTAATTTT 58.372 30.769 0.00 0.00 0.00 1.82
2387 11082 4.099266 GCTGCCATACCATTTCCACATTAA 59.901 41.667 0.00 0.00 0.00 1.40
2399 11094 1.134310 CAGAGACATGCTGCCATACCA 60.134 52.381 0.00 0.00 0.00 3.25
2417 11123 7.871973 CAGAACAGAAATATACTCCCATCTCAG 59.128 40.741 0.00 0.00 0.00 3.35
2437 11143 7.444299 ACCGACCTTACTAAATAAACAGAACA 58.556 34.615 0.00 0.00 0.00 3.18
2439 11145 9.807649 GATACCGACCTTACTAAATAAACAGAA 57.192 33.333 0.00 0.00 0.00 3.02
2441 11147 9.590451 TTGATACCGACCTTACTAAATAAACAG 57.410 33.333 0.00 0.00 0.00 3.16
2451 11157 7.356089 TCATATGTTTGATACCGACCTTACT 57.644 36.000 1.90 0.00 0.00 2.24
2455 11161 6.459066 CAGATCATATGTTTGATACCGACCT 58.541 40.000 1.90 0.00 36.48 3.85
2459 11165 6.813649 CCTACCAGATCATATGTTTGATACCG 59.186 42.308 1.90 0.00 36.48 4.02
2465 11171 5.999600 TCATGCCTACCAGATCATATGTTTG 59.000 40.000 1.90 0.31 0.00 2.93
2466 11172 6.191657 TCATGCCTACCAGATCATATGTTT 57.808 37.500 1.90 0.00 0.00 2.83
2467 11173 5.830799 TCATGCCTACCAGATCATATGTT 57.169 39.130 1.90 0.00 0.00 2.71
2468 11174 5.742063 CATCATGCCTACCAGATCATATGT 58.258 41.667 1.90 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.