Multiple sequence alignment - TraesCS6A01G020000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G020000 chr6A 100.000 2507 0 0 1 2507 9364253 9366759 0.000000e+00 4630.0
1 TraesCS6A01G020000 chr6A 80.050 1198 204 26 396 1571 9350263 9351447 0.000000e+00 856.0
2 TraesCS6A01G020000 chr6A 100.000 181 0 0 1671 1851 7980471 7980291 4.000000e-88 335.0
3 TraesCS6A01G020000 chr6A 83.562 292 31 13 2219 2507 35567338 35567061 8.900000e-65 257.0
4 TraesCS6A01G020000 chr6A 83.221 298 22 15 2219 2507 8993465 8993187 5.350000e-62 248.0
5 TraesCS6A01G020000 chr6D 90.607 1022 84 9 338 1350 8987217 8988235 0.000000e+00 1345.0
6 TraesCS6A01G020000 chr6D 80.161 1240 218 19 304 1532 8894017 8895239 0.000000e+00 902.0
7 TraesCS6A01G020000 chr6D 79.571 1258 226 26 283 1526 8659885 8658645 0.000000e+00 870.0
8 TraesCS6A01G020000 chr6D 80.085 1170 209 21 350 1508 8397155 8395999 0.000000e+00 848.0
9 TraesCS6A01G020000 chr6D 78.147 1112 230 12 429 1532 8095669 8094563 0.000000e+00 695.0
10 TraesCS6A01G020000 chr6D 92.958 355 20 5 1851 2204 8577608 8577258 1.720000e-141 512.0
11 TraesCS6A01G020000 chr6D 88.621 290 24 5 2219 2507 8577207 8576926 6.640000e-91 344.0
12 TraesCS6A01G020000 chr6D 83.500 200 20 6 307 504 8402454 8402266 9.220000e-40 174.0
13 TraesCS6A01G020000 chr1A 85.679 1201 162 10 322 1518 589248526 589247332 0.000000e+00 1256.0
14 TraesCS6A01G020000 chr1A 99.465 187 0 1 1671 1856 583789312 583789126 3.090000e-89 339.0
15 TraesCS6A01G020000 chr6B 84.584 1213 161 18 314 1514 670533496 670532298 0.000000e+00 1181.0
16 TraesCS6A01G020000 chr6B 82.960 1338 194 20 350 1663 670602186 670600859 0.000000e+00 1177.0
17 TraesCS6A01G020000 chr6B 80.825 1163 202 18 375 1526 15750979 15749827 0.000000e+00 893.0
18 TraesCS6A01G020000 chr6B 80.614 1140 208 13 376 1508 16429029 16430162 0.000000e+00 869.0
19 TraesCS6A01G020000 chr6B 92.992 371 22 4 1851 2220 15248192 15247825 2.840000e-149 538.0
20 TraesCS6A01G020000 chr6B 91.375 371 28 4 1851 2220 670600869 670600502 2.880000e-139 505.0
21 TraesCS6A01G020000 chr6B 90.054 372 28 5 1851 2220 53075327 53074963 8.120000e-130 473.0
22 TraesCS6A01G020000 chr6B 81.955 532 77 10 1140 1663 53075837 53075317 1.380000e-117 433.0
23 TraesCS6A01G020000 chr6B 92.517 294 14 5 2219 2507 15247776 15247486 4.990000e-112 414.0
24 TraesCS6A01G020000 chr6B 100.000 181 0 0 1671 1851 475722864 475722684 4.000000e-88 335.0
25 TraesCS6A01G020000 chr6B 87.075 294 30 5 2219 2507 53074898 53074608 2.400000e-85 326.0
26 TraesCS6A01G020000 chr6B 85.223 291 27 12 2219 2507 65157267 65156991 4.080000e-73 285.0
27 TraesCS6A01G020000 chr6B 83.721 301 34 13 2216 2507 52601430 52601136 1.140000e-68 270.0
28 TraesCS6A01G020000 chr6B 83.986 281 27 13 2219 2488 670576928 670576655 1.150000e-63 254.0
29 TraesCS6A01G020000 chr6B 84.444 90 8 4 275 364 670587010 670586927 1.600000e-12 84.2
30 TraesCS6A01G020000 chr2B 81.579 1292 204 22 399 1661 800420879 800419593 0.000000e+00 1037.0
31 TraesCS6A01G020000 chr2B 92.453 371 24 4 1851 2220 89495943 89496310 6.140000e-146 527.0
32 TraesCS6A01G020000 chr2B 90.704 355 25 5 1851 2204 709486456 709486109 1.360000e-127 466.0
33 TraesCS6A01G020000 chr2B 94.138 290 14 2 2219 2507 89496359 89496646 2.960000e-119 438.0
34 TraesCS6A01G020000 chr2B 98.942 189 1 1 1671 1859 657198155 657197968 1.110000e-88 337.0
35 TraesCS6A01G020000 chr2B 93.407 91 4 2 2038 2126 800554965 800554875 1.560000e-27 134.0
36 TraesCS6A01G020000 chr2B 100.000 29 0 0 2256 2284 800554710 800554682 1.000000e-03 54.7
37 TraesCS6A01G020000 chr5D 94.159 428 22 3 1891 2317 42074933 42075358 0.000000e+00 649.0
38 TraesCS6A01G020000 chr5D 94.444 144 5 3 1851 1993 499861282 499861141 4.200000e-53 219.0
39 TraesCS6A01G020000 chrUn 77.758 1115 195 34 587 1663 65790530 65789431 9.780000e-179 636.0
40 TraesCS6A01G020000 chrUn 91.197 284 21 4 1856 2137 65789436 65789155 1.410000e-102 383.0
41 TraesCS6A01G020000 chrUn 93.293 164 9 1 2153 2316 65789028 65788867 8.960000e-60 241.0
42 TraesCS6A01G020000 chrUn 94.872 39 2 0 2134 2172 65789078 65789040 7.490000e-06 62.1
43 TraesCS6A01G020000 chr7B 85.246 488 57 8 1164 1636 32346795 32346308 2.900000e-134 488.0
44 TraesCS6A01G020000 chr2A 98.947 190 1 1 1671 1860 661716302 661716490 3.090000e-89 339.0
45 TraesCS6A01G020000 chr4D 100.000 181 0 0 1671 1851 478512364 478512184 4.000000e-88 335.0
46 TraesCS6A01G020000 chr4B 100.000 181 0 0 1671 1851 455621627 455621447 4.000000e-88 335.0
47 TraesCS6A01G020000 chr3A 99.459 185 0 1 1666 1849 136568627 136568443 4.000000e-88 335.0
48 TraesCS6A01G020000 chr1B 97.917 192 4 0 1671 1862 681774411 681774602 1.440000e-87 333.0
49 TraesCS6A01G020000 chr5B 94.444 144 5 3 1851 1993 621234677 621234536 4.200000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G020000 chr6A 9364253 9366759 2506 False 4630.000000 4630 100.000000 1 2507 1 chr6A.!!$F2 2506
1 TraesCS6A01G020000 chr6A 9350263 9351447 1184 False 856.000000 856 80.050000 396 1571 1 chr6A.!!$F1 1175
2 TraesCS6A01G020000 chr6D 8987217 8988235 1018 False 1345.000000 1345 90.607000 338 1350 1 chr6D.!!$F2 1012
3 TraesCS6A01G020000 chr6D 8894017 8895239 1222 False 902.000000 902 80.161000 304 1532 1 chr6D.!!$F1 1228
4 TraesCS6A01G020000 chr6D 8658645 8659885 1240 True 870.000000 870 79.571000 283 1526 1 chr6D.!!$R4 1243
5 TraesCS6A01G020000 chr6D 8395999 8397155 1156 True 848.000000 848 80.085000 350 1508 1 chr6D.!!$R2 1158
6 TraesCS6A01G020000 chr6D 8094563 8095669 1106 True 695.000000 695 78.147000 429 1532 1 chr6D.!!$R1 1103
7 TraesCS6A01G020000 chr6D 8576926 8577608 682 True 428.000000 512 90.789500 1851 2507 2 chr6D.!!$R5 656
8 TraesCS6A01G020000 chr1A 589247332 589248526 1194 True 1256.000000 1256 85.679000 322 1518 1 chr1A.!!$R2 1196
9 TraesCS6A01G020000 chr6B 670532298 670533496 1198 True 1181.000000 1181 84.584000 314 1514 1 chr6B.!!$R5 1200
10 TraesCS6A01G020000 chr6B 15749827 15750979 1152 True 893.000000 893 80.825000 375 1526 1 chr6B.!!$R1 1151
11 TraesCS6A01G020000 chr6B 16429029 16430162 1133 False 869.000000 869 80.614000 376 1508 1 chr6B.!!$F1 1132
12 TraesCS6A01G020000 chr6B 670600502 670602186 1684 True 841.000000 1177 87.167500 350 2220 2 chr6B.!!$R10 1870
13 TraesCS6A01G020000 chr6B 15247486 15248192 706 True 476.000000 538 92.754500 1851 2507 2 chr6B.!!$R8 656
14 TraesCS6A01G020000 chr6B 53074608 53075837 1229 True 410.666667 473 86.361333 1140 2507 3 chr6B.!!$R9 1367
15 TraesCS6A01G020000 chr2B 800419593 800420879 1286 True 1037.000000 1037 81.579000 399 1661 1 chr2B.!!$R3 1262
16 TraesCS6A01G020000 chr2B 89495943 89496646 703 False 482.500000 527 93.295500 1851 2507 2 chr2B.!!$F1 656
17 TraesCS6A01G020000 chrUn 65788867 65790530 1663 True 330.525000 636 89.280000 587 2316 4 chrUn.!!$R1 1729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.04109 GGGTGGGGTCATTTGGTCAT 59.959 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 1775 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.0 0.0 44.78 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.872635 GAATACAACACATGTGATCAGTGG 58.127 41.667 31.94 9.48 43.77 4.00
24 25 3.213206 ACAACACATGTGATCAGTGGT 57.787 42.857 31.94 10.17 41.93 4.16
25 26 3.547649 CAACACATGTGATCAGTGGTG 57.452 47.619 31.94 14.90 43.54 4.17
26 27 1.527034 ACACATGTGATCAGTGGTGC 58.473 50.000 31.94 0.00 37.58 5.01
27 28 1.072806 ACACATGTGATCAGTGGTGCT 59.927 47.619 31.94 1.87 37.58 4.40
28 29 2.156917 CACATGTGATCAGTGGTGCTT 58.843 47.619 21.64 0.00 0.00 3.91
29 30 2.555325 CACATGTGATCAGTGGTGCTTT 59.445 45.455 21.64 0.00 0.00 3.51
30 31 3.005050 CACATGTGATCAGTGGTGCTTTT 59.995 43.478 21.64 0.00 0.00 2.27
31 32 3.638160 ACATGTGATCAGTGGTGCTTTTT 59.362 39.130 0.00 0.00 0.00 1.94
62 63 7.659652 AAAAGTCGTGATAAGAAAAGAGAGG 57.340 36.000 0.00 0.00 0.00 3.69
63 64 6.591750 AAGTCGTGATAAGAAAAGAGAGGA 57.408 37.500 0.00 0.00 0.00 3.71
64 65 6.591750 AGTCGTGATAAGAAAAGAGAGGAA 57.408 37.500 0.00 0.00 0.00 3.36
65 66 6.994221 AGTCGTGATAAGAAAAGAGAGGAAA 58.006 36.000 0.00 0.00 0.00 3.13
66 67 7.442656 AGTCGTGATAAGAAAAGAGAGGAAAA 58.557 34.615 0.00 0.00 0.00 2.29
67 68 7.931948 AGTCGTGATAAGAAAAGAGAGGAAAAA 59.068 33.333 0.00 0.00 0.00 1.94
147 148 9.953565 GCTGGGTTTATATATAGGAATACAACA 57.046 33.333 0.00 0.00 0.00 3.33
193 194 2.203480 TGGAAACACTGCCTGGCC 60.203 61.111 17.53 0.00 33.40 5.36
194 195 2.116125 GGAAACACTGCCTGGCCT 59.884 61.111 17.53 0.00 0.00 5.19
195 196 2.270986 GGAAACACTGCCTGGCCTG 61.271 63.158 17.53 13.72 0.00 4.85
196 197 1.228245 GAAACACTGCCTGGCCTGA 60.228 57.895 17.53 0.00 0.00 3.86
197 198 1.518903 GAAACACTGCCTGGCCTGAC 61.519 60.000 17.53 0.00 0.00 3.51
198 199 3.832237 AACACTGCCTGGCCTGACG 62.832 63.158 17.53 8.47 0.00 4.35
209 210 3.009115 CCTGACGGGTGGGGTCAT 61.009 66.667 0.00 0.00 42.97 3.06
210 211 2.602676 CCTGACGGGTGGGGTCATT 61.603 63.158 0.00 0.00 42.97 2.57
211 212 1.378762 CTGACGGGTGGGGTCATTT 59.621 57.895 0.00 0.00 42.97 2.32
212 213 0.960364 CTGACGGGTGGGGTCATTTG 60.960 60.000 0.00 0.00 42.97 2.32
213 214 1.677633 GACGGGTGGGGTCATTTGG 60.678 63.158 0.00 0.00 34.56 3.28
214 215 2.420466 GACGGGTGGGGTCATTTGGT 62.420 60.000 0.00 0.00 34.56 3.67
215 216 1.677633 CGGGTGGGGTCATTTGGTC 60.678 63.158 0.00 0.00 0.00 4.02
216 217 1.462928 GGGTGGGGTCATTTGGTCA 59.537 57.895 0.00 0.00 0.00 4.02
217 218 0.041090 GGGTGGGGTCATTTGGTCAT 59.959 55.000 0.00 0.00 0.00 3.06
218 219 1.474330 GGTGGGGTCATTTGGTCATC 58.526 55.000 0.00 0.00 0.00 2.92
219 220 1.272425 GGTGGGGTCATTTGGTCATCA 60.272 52.381 0.00 0.00 0.00 3.07
220 221 2.624029 GGTGGGGTCATTTGGTCATCAT 60.624 50.000 0.00 0.00 0.00 2.45
221 222 2.689983 GTGGGGTCATTTGGTCATCATC 59.310 50.000 0.00 0.00 0.00 2.92
222 223 2.311243 TGGGGTCATTTGGTCATCATCA 59.689 45.455 0.00 0.00 0.00 3.07
223 224 3.245550 TGGGGTCATTTGGTCATCATCAA 60.246 43.478 0.00 0.00 0.00 2.57
224 225 3.382546 GGGGTCATTTGGTCATCATCAAG 59.617 47.826 0.00 0.00 0.00 3.02
225 226 3.382546 GGGTCATTTGGTCATCATCAAGG 59.617 47.826 0.00 0.00 0.00 3.61
226 227 4.019174 GGTCATTTGGTCATCATCAAGGT 58.981 43.478 0.00 0.00 0.00 3.50
227 228 4.096984 GGTCATTTGGTCATCATCAAGGTC 59.903 45.833 0.00 0.00 0.00 3.85
228 229 4.096984 GTCATTTGGTCATCATCAAGGTCC 59.903 45.833 0.00 0.00 0.00 4.46
229 230 3.805066 TTTGGTCATCATCAAGGTCCA 57.195 42.857 0.00 0.00 0.00 4.02
230 231 3.805066 TTGGTCATCATCAAGGTCCAA 57.195 42.857 0.00 0.00 0.00 3.53
231 232 3.071874 TGGTCATCATCAAGGTCCAAC 57.928 47.619 0.00 0.00 0.00 3.77
232 233 2.290896 TGGTCATCATCAAGGTCCAACC 60.291 50.000 0.00 0.00 38.99 3.77
233 234 2.290896 GGTCATCATCAAGGTCCAACCA 60.291 50.000 0.00 0.00 41.95 3.67
234 235 3.012518 GTCATCATCAAGGTCCAACCAG 58.987 50.000 0.00 0.00 41.95 4.00
235 236 2.912295 TCATCATCAAGGTCCAACCAGA 59.088 45.455 0.00 0.00 41.95 3.86
236 237 2.859165 TCATCAAGGTCCAACCAGAC 57.141 50.000 0.00 0.00 41.95 3.51
242 243 4.475527 GTCCAACCAGACCACACC 57.524 61.111 0.00 0.00 0.00 4.16
243 244 1.529796 GTCCAACCAGACCACACCA 59.470 57.895 0.00 0.00 0.00 4.17
244 245 0.818040 GTCCAACCAGACCACACCAC 60.818 60.000 0.00 0.00 0.00 4.16
245 246 1.891919 CCAACCAGACCACACCACG 60.892 63.158 0.00 0.00 0.00 4.94
246 247 2.203153 AACCAGACCACACCACGC 60.203 61.111 0.00 0.00 0.00 5.34
247 248 3.037686 AACCAGACCACACCACGCA 62.038 57.895 0.00 0.00 0.00 5.24
248 249 2.203139 CCAGACCACACCACGCAA 60.203 61.111 0.00 0.00 0.00 4.85
249 250 1.821759 CCAGACCACACCACGCAAA 60.822 57.895 0.00 0.00 0.00 3.68
250 251 1.355210 CAGACCACACCACGCAAAC 59.645 57.895 0.00 0.00 0.00 2.93
251 252 1.822186 AGACCACACCACGCAAACC 60.822 57.895 0.00 0.00 0.00 3.27
252 253 2.044848 ACCACACCACGCAAACCA 60.045 55.556 0.00 0.00 0.00 3.67
253 254 1.452145 GACCACACCACGCAAACCAT 61.452 55.000 0.00 0.00 0.00 3.55
254 255 1.285641 CCACACCACGCAAACCATC 59.714 57.895 0.00 0.00 0.00 3.51
255 256 1.451337 CCACACCACGCAAACCATCA 61.451 55.000 0.00 0.00 0.00 3.07
256 257 0.317770 CACACCACGCAAACCATCAC 60.318 55.000 0.00 0.00 0.00 3.06
257 258 1.285641 CACCACGCAAACCATCACC 59.714 57.895 0.00 0.00 0.00 4.02
258 259 1.152860 ACCACGCAAACCATCACCA 60.153 52.632 0.00 0.00 0.00 4.17
259 260 1.285641 CCACGCAAACCATCACCAC 59.714 57.895 0.00 0.00 0.00 4.16
260 261 1.172180 CCACGCAAACCATCACCACT 61.172 55.000 0.00 0.00 0.00 4.00
261 262 0.238289 CACGCAAACCATCACCACTC 59.762 55.000 0.00 0.00 0.00 3.51
262 263 0.108585 ACGCAAACCATCACCACTCT 59.891 50.000 0.00 0.00 0.00 3.24
263 264 0.798776 CGCAAACCATCACCACTCTC 59.201 55.000 0.00 0.00 0.00 3.20
264 265 1.609061 CGCAAACCATCACCACTCTCT 60.609 52.381 0.00 0.00 0.00 3.10
265 266 2.079925 GCAAACCATCACCACTCTCTC 58.920 52.381 0.00 0.00 0.00 3.20
266 267 2.289945 GCAAACCATCACCACTCTCTCT 60.290 50.000 0.00 0.00 0.00 3.10
267 268 3.594134 CAAACCATCACCACTCTCTCTC 58.406 50.000 0.00 0.00 0.00 3.20
268 269 2.917713 ACCATCACCACTCTCTCTCT 57.082 50.000 0.00 0.00 0.00 3.10
269 270 2.733956 ACCATCACCACTCTCTCTCTC 58.266 52.381 0.00 0.00 0.00 3.20
270 271 2.311542 ACCATCACCACTCTCTCTCTCT 59.688 50.000 0.00 0.00 0.00 3.10
271 272 2.951642 CCATCACCACTCTCTCTCTCTC 59.048 54.545 0.00 0.00 0.00 3.20
272 273 3.371917 CCATCACCACTCTCTCTCTCTCT 60.372 52.174 0.00 0.00 0.00 3.10
273 274 3.627395 TCACCACTCTCTCTCTCTCTC 57.373 52.381 0.00 0.00 0.00 3.20
274 275 3.181329 TCACCACTCTCTCTCTCTCTCT 58.819 50.000 0.00 0.00 0.00 3.10
275 276 3.197766 TCACCACTCTCTCTCTCTCTCTC 59.802 52.174 0.00 0.00 0.00 3.20
276 277 3.198635 CACCACTCTCTCTCTCTCTCTCT 59.801 52.174 0.00 0.00 0.00 3.10
277 278 3.452627 ACCACTCTCTCTCTCTCTCTCTC 59.547 52.174 0.00 0.00 0.00 3.20
278 279 3.708631 CCACTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
279 280 4.202202 CCACTCTCTCTCTCTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
280 281 4.648762 CACTCTCTCTCTCTCTCTCTCTCT 59.351 50.000 0.00 0.00 0.00 3.10
281 282 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
282 283 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
283 284 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
284 285 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
285 286 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
286 287 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
287 288 2.959030 TCTCTCTCTCTCTCTCTCTCCG 59.041 54.545 0.00 0.00 0.00 4.63
294 295 1.153066 TCTCTCTCTCCGCTCGCAT 60.153 57.895 0.00 0.00 0.00 4.73
297 298 1.032114 TCTCTCTCCGCTCGCATCAA 61.032 55.000 0.00 0.00 0.00 2.57
410 425 2.496817 CTTCTTCCTCCGCCTCCG 59.503 66.667 0.00 0.00 0.00 4.63
816 847 0.114560 ACTTCCTGTCCCTCTTCGGA 59.885 55.000 0.00 0.00 33.16 4.55
973 1010 2.202851 CTTCGCGATGGCTGCTCT 60.203 61.111 10.88 0.00 36.88 4.09
984 1025 1.376553 GCTGCTCTCCACCAACCTC 60.377 63.158 0.00 0.00 0.00 3.85
1055 1096 0.107459 GGCTCTGGGATGTTCAGACC 60.107 60.000 0.00 0.00 36.46 3.85
1114 1155 1.139256 TCACCGCCAAAGTGAACTACA 59.861 47.619 0.00 0.00 41.17 2.74
1208 1249 1.586422 GATAAGGAATCGCTGCAGCA 58.414 50.000 36.03 23.76 42.21 4.41
1232 1273 0.034380 TCCGAGTTCCTCATCTCCGT 60.034 55.000 0.00 0.00 0.00 4.69
1365 1406 0.467474 TGCTAGATCACGACCGGGAT 60.467 55.000 6.32 6.89 41.59 3.85
1438 1479 0.879765 CCCTCACAAGAAAGCTGCAG 59.120 55.000 10.11 10.11 0.00 4.41
1470 1511 0.324943 AAGACTATGCCACCGCTTGT 59.675 50.000 0.00 0.00 35.36 3.16
1496 1544 1.648467 GAAGTGCCCGCCAGATTCAC 61.648 60.000 0.00 0.00 0.00 3.18
1526 1576 6.016276 ACATGAACCAAGACCAGTATGAAAAC 60.016 38.462 0.00 0.00 39.69 2.43
1540 1608 8.498054 CAGTATGAAAACTGGTATGTCATTCT 57.502 34.615 0.00 0.00 42.63 2.40
1651 1729 5.978934 GCATCCTGCCAATTTATTTGAAG 57.021 39.130 0.00 0.00 37.42 3.02
1652 1730 5.422145 GCATCCTGCCAATTTATTTGAAGT 58.578 37.500 0.00 0.00 37.42 3.01
1653 1731 6.572519 GCATCCTGCCAATTTATTTGAAGTA 58.427 36.000 0.00 0.00 37.42 2.24
1654 1732 7.212274 GCATCCTGCCAATTTATTTGAAGTAT 58.788 34.615 0.00 0.00 37.42 2.12
1655 1733 7.383300 GCATCCTGCCAATTTATTTGAAGTATC 59.617 37.037 0.00 0.00 37.42 2.24
1656 1734 7.953005 TCCTGCCAATTTATTTGAAGTATCA 57.047 32.000 0.00 0.00 37.53 2.15
1657 1735 8.359875 TCCTGCCAATTTATTTGAAGTATCAA 57.640 30.769 0.00 0.00 43.70 2.57
1658 1736 8.980596 TCCTGCCAATTTATTTGAAGTATCAAT 58.019 29.630 0.00 0.00 44.70 2.57
1659 1737 9.037737 CCTGCCAATTTATTTGAAGTATCAATG 57.962 33.333 0.00 0.00 44.70 2.82
1660 1738 9.806203 CTGCCAATTTATTTGAAGTATCAATGA 57.194 29.630 0.00 0.00 44.70 2.57
1661 1739 9.806203 TGCCAATTTATTTGAAGTATCAATGAG 57.194 29.630 0.00 0.00 44.70 2.90
1662 1740 9.807649 GCCAATTTATTTGAAGTATCAATGAGT 57.192 29.630 0.00 0.00 44.70 3.41
1670 1748 8.713737 TTTGAAGTATCAATGAGTGAGATCAG 57.286 34.615 0.00 0.00 44.70 2.90
1671 1749 6.814043 TGAAGTATCAATGAGTGAGATCAGG 58.186 40.000 0.00 0.00 40.43 3.86
1672 1750 5.804944 AGTATCAATGAGTGAGATCAGGG 57.195 43.478 0.00 0.00 40.43 4.45
1673 1751 5.462240 AGTATCAATGAGTGAGATCAGGGA 58.538 41.667 0.00 0.00 40.43 4.20
1674 1752 4.959560 ATCAATGAGTGAGATCAGGGAG 57.040 45.455 0.00 0.00 40.43 4.30
1675 1753 2.433604 TCAATGAGTGAGATCAGGGAGC 59.566 50.000 0.00 0.00 31.44 4.70
1676 1754 1.422531 ATGAGTGAGATCAGGGAGCC 58.577 55.000 0.00 0.00 31.44 4.70
1677 1755 0.337773 TGAGTGAGATCAGGGAGCCT 59.662 55.000 0.00 0.00 0.00 4.58
1678 1756 1.273495 TGAGTGAGATCAGGGAGCCTT 60.273 52.381 0.00 0.00 0.00 4.35
1679 1757 1.138661 GAGTGAGATCAGGGAGCCTTG 59.861 57.143 0.00 0.00 0.00 3.61
1680 1758 0.179936 GTGAGATCAGGGAGCCTTGG 59.820 60.000 0.00 0.00 0.00 3.61
1681 1759 1.148048 GAGATCAGGGAGCCTTGGC 59.852 63.158 2.97 2.97 0.00 4.52
1682 1760 2.203126 GATCAGGGAGCCTTGGCG 60.203 66.667 5.95 0.00 0.00 5.69
1683 1761 4.496336 ATCAGGGAGCCTTGGCGC 62.496 66.667 6.84 6.84 0.00 6.53
1690 1768 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
1691 1769 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
1692 1770 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
1693 1771 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
1694 1772 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
1695 1773 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
1696 1774 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
1701 1779 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
1702 1780 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
1703 1781 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
1704 1782 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
1705 1783 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
1706 1784 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1707 1785 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1708 1786 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
1709 1787 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
1710 1788 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1711 1789 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1712 1790 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1713 1791 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1714 1792 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1715 1793 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1725 1803 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
1726 1804 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
1727 1805 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
1728 1806 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
1729 1807 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
1730 1808 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
1731 1809 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
1732 1810 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
1733 1811 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
1734 1812 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
1735 1813 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
1736 1814 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
1737 1815 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
1738 1816 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
1739 1817 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
1750 1828 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
1751 1829 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
1752 1830 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
1753 1831 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
1754 1832 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
1755 1833 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
1756 1834 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
1757 1835 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
1758 1836 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
1759 1837 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
1760 1838 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
1761 1839 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
1762 1840 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
1763 1841 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
1764 1842 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
1765 1843 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
1766 1844 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
1767 1845 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
1768 1846 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
1769 1847 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1770 1848 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1771 1849 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1772 1850 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1773 1851 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1774 1852 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
1775 1853 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
1776 1854 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
1777 1855 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
1778 1856 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
1779 1857 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
1780 1858 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
1781 1859 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
1782 1860 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
1783 1861 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
1784 1862 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
1785 1863 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
1786 1864 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
1787 1865 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
1788 1866 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
1789 1867 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
1790 1868 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
1795 1873 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1796 1874 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1797 1875 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1798 1876 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1799 1877 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1800 1878 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1801 1879 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1802 1880 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1803 1881 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
1804 1882 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
1805 1883 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
1806 1884 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
1807 1885 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
1808 1886 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
1809 1887 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1810 1888 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1811 1889 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1812 1890 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1813 1891 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1814 1892 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1835 1913 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
1836 1914 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
1837 1915 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
1838 1916 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
1839 1917 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
1840 1918 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
1841 1919 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
1842 1920 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
1843 1921 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
1848 1926 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
1849 1927 1.838396 CACTGGGGCTGCCCTTTTT 60.838 57.895 34.99 15.74 44.66 1.94
1911 1989 2.004583 CTGAAATGGCCATTGCAGTG 57.995 50.000 41.72 27.68 45.34 3.66
1913 1991 1.693062 TGAAATGGCCATTGCAGTGTT 59.307 42.857 32.02 15.26 40.13 3.32
1914 1992 2.288948 TGAAATGGCCATTGCAGTGTTC 60.289 45.455 32.02 22.52 40.13 3.18
2112 2193 3.828875 AGGGAATCTGATCTCGAAACC 57.171 47.619 0.00 0.00 0.00 3.27
2137 2298 7.607223 CCGAATAGTTGAGTAGTAGGCTAGTAT 59.393 40.741 12.05 2.40 31.38 2.12
2199 2391 4.706962 ACAGAAAATTCTAATGCCCTGGTC 59.293 41.667 0.00 0.00 35.34 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.181811 CACCACTGATCACATGTGTTGTATT 59.818 40.000 24.63 4.48 36.57 1.89
2 3 4.696877 CACCACTGATCACATGTGTTGTAT 59.303 41.667 24.63 11.39 36.57 2.29
3 4 4.064388 CACCACTGATCACATGTGTTGTA 58.936 43.478 24.63 6.58 36.57 2.41
4 5 2.880268 CACCACTGATCACATGTGTTGT 59.120 45.455 24.63 15.52 39.91 3.32
6 7 1.881973 GCACCACTGATCACATGTGTT 59.118 47.619 24.63 17.20 0.00 3.32
7 8 1.072806 AGCACCACTGATCACATGTGT 59.927 47.619 24.63 12.64 0.00 3.72
8 9 1.817357 AGCACCACTGATCACATGTG 58.183 50.000 20.18 20.18 0.00 3.21
9 10 2.574006 AAGCACCACTGATCACATGT 57.426 45.000 0.00 0.00 0.00 3.21
10 11 3.928727 AAAAGCACCACTGATCACATG 57.071 42.857 0.00 0.00 0.00 3.21
36 37 9.204570 CCTCTCTTTTCTTATCACGACTTTTTA 57.795 33.333 0.00 0.00 0.00 1.52
37 38 7.931948 TCCTCTCTTTTCTTATCACGACTTTTT 59.068 33.333 0.00 0.00 0.00 1.94
38 39 7.442656 TCCTCTCTTTTCTTATCACGACTTTT 58.557 34.615 0.00 0.00 0.00 2.27
39 40 6.994221 TCCTCTCTTTTCTTATCACGACTTT 58.006 36.000 0.00 0.00 0.00 2.66
40 41 6.591750 TCCTCTCTTTTCTTATCACGACTT 57.408 37.500 0.00 0.00 0.00 3.01
41 42 6.591750 TTCCTCTCTTTTCTTATCACGACT 57.408 37.500 0.00 0.00 0.00 4.18
42 43 7.653767 TTTTCCTCTCTTTTCTTATCACGAC 57.346 36.000 0.00 0.00 0.00 4.34
121 122 9.953565 TGTTGTATTCCTATATATAAACCCAGC 57.046 33.333 0.00 0.00 0.00 4.85
162 163 8.682710 GGCAGTGTTTCCACATCTAATAAATAA 58.317 33.333 0.00 0.00 44.39 1.40
163 164 8.052748 AGGCAGTGTTTCCACATCTAATAAATA 58.947 33.333 0.00 0.00 44.39 1.40
164 165 6.891908 AGGCAGTGTTTCCACATCTAATAAAT 59.108 34.615 0.00 0.00 44.39 1.40
165 166 6.150976 CAGGCAGTGTTTCCACATCTAATAAA 59.849 38.462 0.00 0.00 44.39 1.40
166 167 5.647658 CAGGCAGTGTTTCCACATCTAATAA 59.352 40.000 0.00 0.00 44.39 1.40
167 168 5.185454 CAGGCAGTGTTTCCACATCTAATA 58.815 41.667 0.00 0.00 44.39 0.98
168 169 4.012374 CAGGCAGTGTTTCCACATCTAAT 58.988 43.478 0.00 0.00 44.39 1.73
169 170 3.411446 CAGGCAGTGTTTCCACATCTAA 58.589 45.455 0.00 0.00 44.39 2.10
170 171 2.290260 CCAGGCAGTGTTTCCACATCTA 60.290 50.000 0.00 0.00 44.39 1.98
171 172 1.546323 CCAGGCAGTGTTTCCACATCT 60.546 52.381 0.00 0.00 44.39 2.90
172 173 0.883833 CCAGGCAGTGTTTCCACATC 59.116 55.000 0.00 0.00 44.39 3.06
173 174 1.181098 GCCAGGCAGTGTTTCCACAT 61.181 55.000 6.55 0.00 44.39 3.21
174 175 1.827789 GCCAGGCAGTGTTTCCACA 60.828 57.895 6.55 0.00 44.39 4.17
175 176 2.564721 GGCCAGGCAGTGTTTCCAC 61.565 63.158 15.19 0.00 42.17 4.02
176 177 2.203480 GGCCAGGCAGTGTTTCCA 60.203 61.111 15.19 0.00 0.00 3.53
177 178 2.116125 AGGCCAGGCAGTGTTTCC 59.884 61.111 15.19 0.00 0.00 3.13
178 179 1.228245 TCAGGCCAGGCAGTGTTTC 60.228 57.895 15.19 0.00 0.00 2.78
179 180 1.529244 GTCAGGCCAGGCAGTGTTT 60.529 57.895 15.19 0.00 0.00 2.83
180 181 2.113986 GTCAGGCCAGGCAGTGTT 59.886 61.111 15.19 0.00 0.00 3.32
181 182 4.320456 CGTCAGGCCAGGCAGTGT 62.320 66.667 15.19 0.00 0.00 3.55
192 193 2.137177 AAATGACCCCACCCGTCAGG 62.137 60.000 0.00 0.00 43.17 3.86
193 194 0.960364 CAAATGACCCCACCCGTCAG 60.960 60.000 0.00 0.00 43.17 3.51
194 195 1.074072 CAAATGACCCCACCCGTCA 59.926 57.895 0.00 0.00 44.00 4.35
195 196 1.677633 CCAAATGACCCCACCCGTC 60.678 63.158 0.00 0.00 0.00 4.79
196 197 2.420466 GACCAAATGACCCCACCCGT 62.420 60.000 0.00 0.00 0.00 5.28
197 198 1.677633 GACCAAATGACCCCACCCG 60.678 63.158 0.00 0.00 0.00 5.28
198 199 0.041090 ATGACCAAATGACCCCACCC 59.959 55.000 0.00 0.00 0.00 4.61
199 200 1.272425 TGATGACCAAATGACCCCACC 60.272 52.381 0.00 0.00 0.00 4.61
200 201 2.214376 TGATGACCAAATGACCCCAC 57.786 50.000 0.00 0.00 0.00 4.61
201 202 2.311243 TGATGATGACCAAATGACCCCA 59.689 45.455 0.00 0.00 0.00 4.96
202 203 3.017048 TGATGATGACCAAATGACCCC 57.983 47.619 0.00 0.00 0.00 4.95
203 204 3.382546 CCTTGATGATGACCAAATGACCC 59.617 47.826 0.00 0.00 0.00 4.46
204 205 4.019174 ACCTTGATGATGACCAAATGACC 58.981 43.478 0.00 0.00 0.00 4.02
205 206 4.096984 GGACCTTGATGATGACCAAATGAC 59.903 45.833 0.00 0.00 0.00 3.06
206 207 4.263860 TGGACCTTGATGATGACCAAATGA 60.264 41.667 0.00 0.00 0.00 2.57
207 208 4.018490 TGGACCTTGATGATGACCAAATG 58.982 43.478 0.00 0.00 0.00 2.32
208 209 4.320546 TGGACCTTGATGATGACCAAAT 57.679 40.909 0.00 0.00 0.00 2.32
209 210 3.805066 TGGACCTTGATGATGACCAAA 57.195 42.857 0.00 0.00 0.00 3.28
210 211 3.420893 GTTGGACCTTGATGATGACCAA 58.579 45.455 0.00 0.00 34.29 3.67
211 212 2.290896 GGTTGGACCTTGATGATGACCA 60.291 50.000 0.00 0.00 34.73 4.02
212 213 2.290896 TGGTTGGACCTTGATGATGACC 60.291 50.000 0.00 0.00 39.58 4.02
213 214 3.012518 CTGGTTGGACCTTGATGATGAC 58.987 50.000 0.00 0.00 39.58 3.06
214 215 2.912295 TCTGGTTGGACCTTGATGATGA 59.088 45.455 0.00 0.00 39.58 2.92
215 216 3.012518 GTCTGGTTGGACCTTGATGATG 58.987 50.000 0.00 0.00 39.58 3.07
216 217 3.356529 GTCTGGTTGGACCTTGATGAT 57.643 47.619 0.00 0.00 39.58 2.45
217 218 2.859165 GTCTGGTTGGACCTTGATGA 57.141 50.000 0.00 0.00 39.58 2.92
225 226 0.818040 GTGGTGTGGTCTGGTTGGAC 60.818 60.000 0.00 0.00 35.66 4.02
226 227 1.529796 GTGGTGTGGTCTGGTTGGA 59.470 57.895 0.00 0.00 0.00 3.53
227 228 1.891919 CGTGGTGTGGTCTGGTTGG 60.892 63.158 0.00 0.00 0.00 3.77
228 229 2.542907 GCGTGGTGTGGTCTGGTTG 61.543 63.158 0.00 0.00 0.00 3.77
229 230 2.203153 GCGTGGTGTGGTCTGGTT 60.203 61.111 0.00 0.00 0.00 3.67
230 231 2.544590 TTTGCGTGGTGTGGTCTGGT 62.545 55.000 0.00 0.00 0.00 4.00
231 232 1.821759 TTTGCGTGGTGTGGTCTGG 60.822 57.895 0.00 0.00 0.00 3.86
232 233 1.355210 GTTTGCGTGGTGTGGTCTG 59.645 57.895 0.00 0.00 0.00 3.51
233 234 1.822186 GGTTTGCGTGGTGTGGTCT 60.822 57.895 0.00 0.00 0.00 3.85
234 235 1.452145 ATGGTTTGCGTGGTGTGGTC 61.452 55.000 0.00 0.00 0.00 4.02
235 236 1.452145 GATGGTTTGCGTGGTGTGGT 61.452 55.000 0.00 0.00 0.00 4.16
236 237 1.285641 GATGGTTTGCGTGGTGTGG 59.714 57.895 0.00 0.00 0.00 4.17
237 238 0.317770 GTGATGGTTTGCGTGGTGTG 60.318 55.000 0.00 0.00 0.00 3.82
238 239 1.452145 GGTGATGGTTTGCGTGGTGT 61.452 55.000 0.00 0.00 0.00 4.16
239 240 1.285641 GGTGATGGTTTGCGTGGTG 59.714 57.895 0.00 0.00 0.00 4.17
240 241 1.152860 TGGTGATGGTTTGCGTGGT 60.153 52.632 0.00 0.00 0.00 4.16
241 242 1.172180 AGTGGTGATGGTTTGCGTGG 61.172 55.000 0.00 0.00 0.00 4.94
242 243 0.238289 GAGTGGTGATGGTTTGCGTG 59.762 55.000 0.00 0.00 0.00 5.34
243 244 0.108585 AGAGTGGTGATGGTTTGCGT 59.891 50.000 0.00 0.00 0.00 5.24
244 245 0.798776 GAGAGTGGTGATGGTTTGCG 59.201 55.000 0.00 0.00 0.00 4.85
245 246 2.079925 GAGAGAGTGGTGATGGTTTGC 58.920 52.381 0.00 0.00 0.00 3.68
246 247 3.260380 AGAGAGAGAGTGGTGATGGTTTG 59.740 47.826 0.00 0.00 0.00 2.93
247 248 3.513515 GAGAGAGAGAGTGGTGATGGTTT 59.486 47.826 0.00 0.00 0.00 3.27
248 249 3.096092 GAGAGAGAGAGTGGTGATGGTT 58.904 50.000 0.00 0.00 0.00 3.67
249 250 2.311542 AGAGAGAGAGAGTGGTGATGGT 59.688 50.000 0.00 0.00 0.00 3.55
250 251 2.951642 GAGAGAGAGAGAGTGGTGATGG 59.048 54.545 0.00 0.00 0.00 3.51
251 252 3.879295 GAGAGAGAGAGAGAGTGGTGATG 59.121 52.174 0.00 0.00 0.00 3.07
252 253 3.782523 AGAGAGAGAGAGAGAGTGGTGAT 59.217 47.826 0.00 0.00 0.00 3.06
253 254 3.181329 AGAGAGAGAGAGAGAGTGGTGA 58.819 50.000 0.00 0.00 0.00 4.02
254 255 3.198635 AGAGAGAGAGAGAGAGAGTGGTG 59.801 52.174 0.00 0.00 0.00 4.17
255 256 3.452627 GAGAGAGAGAGAGAGAGAGTGGT 59.547 52.174 0.00 0.00 0.00 4.16
256 257 3.708631 AGAGAGAGAGAGAGAGAGAGTGG 59.291 52.174 0.00 0.00 0.00 4.00
257 258 4.648762 AGAGAGAGAGAGAGAGAGAGAGTG 59.351 50.000 0.00 0.00 0.00 3.51
258 259 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
259 260 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
260 261 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
261 262 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
262 263 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
263 264 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
264 265 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
265 266 3.005261 CGGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
266 267 2.959030 CGGAGAGAGAGAGAGAGAGAGA 59.041 54.545 0.00 0.00 0.00 3.10
267 268 2.546795 GCGGAGAGAGAGAGAGAGAGAG 60.547 59.091 0.00 0.00 0.00 3.20
268 269 1.412710 GCGGAGAGAGAGAGAGAGAGA 59.587 57.143 0.00 0.00 0.00 3.10
269 270 1.414181 AGCGGAGAGAGAGAGAGAGAG 59.586 57.143 0.00 0.00 0.00 3.20
270 271 1.412710 GAGCGGAGAGAGAGAGAGAGA 59.587 57.143 0.00 0.00 0.00 3.10
271 272 1.869754 CGAGCGGAGAGAGAGAGAGAG 60.870 61.905 0.00 0.00 0.00 3.20
272 273 0.104120 CGAGCGGAGAGAGAGAGAGA 59.896 60.000 0.00 0.00 0.00 3.10
273 274 1.498865 GCGAGCGGAGAGAGAGAGAG 61.499 65.000 0.00 0.00 0.00 3.20
274 275 1.522806 GCGAGCGGAGAGAGAGAGA 60.523 63.158 0.00 0.00 0.00 3.10
275 276 1.165907 ATGCGAGCGGAGAGAGAGAG 61.166 60.000 0.00 0.00 0.00 3.20
276 277 1.153066 ATGCGAGCGGAGAGAGAGA 60.153 57.895 0.00 0.00 0.00 3.10
277 278 1.282570 GATGCGAGCGGAGAGAGAG 59.717 63.158 0.00 0.00 0.00 3.20
278 279 1.032114 TTGATGCGAGCGGAGAGAGA 61.032 55.000 0.00 0.00 0.00 3.10
279 280 0.869454 GTTGATGCGAGCGGAGAGAG 60.869 60.000 0.00 0.00 0.00 3.20
280 281 1.139734 GTTGATGCGAGCGGAGAGA 59.860 57.895 0.00 0.00 0.00 3.10
281 282 2.226896 CGTTGATGCGAGCGGAGAG 61.227 63.158 0.00 0.00 0.00 3.20
282 283 2.202610 CGTTGATGCGAGCGGAGA 60.203 61.111 0.00 0.00 0.00 3.71
283 284 3.918220 GCGTTGATGCGAGCGGAG 61.918 66.667 0.00 0.00 0.00 4.63
339 346 0.460987 GAGCATGGCGTACTTCTGCT 60.461 55.000 8.29 8.29 45.32 4.24
340 347 1.432270 GGAGCATGGCGTACTTCTGC 61.432 60.000 0.00 0.00 0.00 4.26
410 425 2.817056 GGCTGAGAGGGGAGATGGC 61.817 68.421 0.00 0.00 0.00 4.40
816 847 1.777941 GGAGGAGGTTGTCGTAGGAT 58.222 55.000 0.00 0.00 0.00 3.24
973 1010 2.029964 GCGTTCGAGGTTGGTGGA 59.970 61.111 0.00 0.00 0.00 4.02
1055 1096 2.094539 CGACAGCACGCAACATCG 59.905 61.111 0.00 0.00 0.00 3.84
1108 1149 5.597806 TCTGAACGTGTTCTTCATGTAGTT 58.402 37.500 13.40 0.00 44.44 2.24
1114 1155 3.997021 GACCATCTGAACGTGTTCTTCAT 59.003 43.478 13.40 1.19 40.14 2.57
1365 1406 8.977412 TCACTGACCATGACTGTATTATAGAAA 58.023 33.333 0.00 0.00 0.00 2.52
1438 1479 2.568696 TAGTCTTCAGCGAGATGTGC 57.431 50.000 0.00 0.00 0.00 4.57
1496 1544 7.390440 TCATACTGGTCTTGGTTCATGTAAAAG 59.610 37.037 0.00 0.00 0.00 2.27
1526 1576 7.340122 TCTTCTCTACAGAATGACATACCAG 57.660 40.000 0.00 0.00 39.69 4.00
1540 1608 4.686091 CAGTGCGATGTTTTCTTCTCTACA 59.314 41.667 0.00 0.00 0.00 2.74
1602 1678 7.106439 TGATCTCACTCTCTTAGTTCCAATC 57.894 40.000 0.00 0.00 35.76 2.67
1644 1722 9.327628 CTGATCTCACTCATTGATACTTCAAAT 57.672 33.333 0.00 0.00 44.70 2.32
1647 1725 6.183360 CCCTGATCTCACTCATTGATACTTCA 60.183 42.308 0.00 0.00 32.17 3.02
1648 1726 6.041409 TCCCTGATCTCACTCATTGATACTTC 59.959 42.308 0.00 0.00 32.17 3.01
1650 1728 5.462240 TCCCTGATCTCACTCATTGATACT 58.538 41.667 0.00 0.00 32.17 2.12
1651 1729 5.782047 CTCCCTGATCTCACTCATTGATAC 58.218 45.833 0.00 0.00 32.17 2.24
1652 1730 4.282957 GCTCCCTGATCTCACTCATTGATA 59.717 45.833 0.00 0.00 32.17 2.15
1653 1731 3.071312 GCTCCCTGATCTCACTCATTGAT 59.929 47.826 0.00 0.00 32.17 2.57
1654 1732 2.433604 GCTCCCTGATCTCACTCATTGA 59.566 50.000 0.00 0.00 0.00 2.57
1655 1733 2.485124 GGCTCCCTGATCTCACTCATTG 60.485 54.545 0.00 0.00 0.00 2.82
1656 1734 1.767681 GGCTCCCTGATCTCACTCATT 59.232 52.381 0.00 0.00 0.00 2.57
1657 1735 1.062275 AGGCTCCCTGATCTCACTCAT 60.062 52.381 0.00 0.00 29.57 2.90
1658 1736 0.337773 AGGCTCCCTGATCTCACTCA 59.662 55.000 0.00 0.00 29.57 3.41
1659 1737 1.138661 CAAGGCTCCCTGATCTCACTC 59.861 57.143 0.00 0.00 32.13 3.51
1660 1738 1.202330 CAAGGCTCCCTGATCTCACT 58.798 55.000 0.00 0.00 32.13 3.41
1661 1739 0.179936 CCAAGGCTCCCTGATCTCAC 59.820 60.000 0.00 0.00 32.13 3.51
1662 1740 1.630126 GCCAAGGCTCCCTGATCTCA 61.630 60.000 3.29 0.00 38.26 3.27
1663 1741 1.148048 GCCAAGGCTCCCTGATCTC 59.852 63.158 3.29 0.00 38.26 2.75
1664 1742 2.739996 CGCCAAGGCTCCCTGATCT 61.740 63.158 9.73 0.00 39.32 2.75
1665 1743 2.203126 CGCCAAGGCTCCCTGATC 60.203 66.667 9.73 0.00 39.32 2.92
1666 1744 4.496336 GCGCCAAGGCTCCCTGAT 62.496 66.667 9.73 0.00 39.32 2.90
1672 1750 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
1673 1751 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
1674 1752 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
1675 1753 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
1676 1754 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
1677 1755 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
1678 1756 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
1679 1757 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
1683 1761 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
1684 1762 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
1685 1763 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
1686 1764 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
1687 1765 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
1688 1766 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
1689 1767 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
1690 1768 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
1691 1769 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
1692 1770 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1693 1771 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1694 1772 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1695 1773 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1696 1774 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1697 1775 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1698 1776 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1709 1787 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
1710 1788 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
1711 1789 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
1712 1790 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
1713 1791 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
1714 1792 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
1715 1793 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
1716 1794 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
1717 1795 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
1718 1796 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
1719 1797 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
1720 1798 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
1721 1799 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
1722 1800 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
1723 1801 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
1724 1802 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
1725 1803 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
1726 1804 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
1727 1805 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
1728 1806 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
1729 1807 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
1730 1808 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
1731 1809 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
1732 1810 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
1733 1811 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
1743 1821 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
1744 1822 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
1745 1823 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
1746 1824 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
1747 1825 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
1748 1826 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1749 1827 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1750 1828 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1751 1829 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1752 1830 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1753 1831 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1754 1832 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1755 1833 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
1756 1834 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
1757 1835 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
1758 1836 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
1759 1837 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
1760 1838 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
1761 1839 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
1762 1840 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
1763 1841 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
1764 1842 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
1765 1843 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
1766 1844 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
1767 1845 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
1768 1846 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
1769 1847 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
1779 1857 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1780 1858 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1781 1859 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1782 1860 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1783 1861 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1784 1862 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1785 1863 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1786 1864 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
1787 1865 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
1788 1866 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1789 1867 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1790 1868 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1791 1869 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1792 1870 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1793 1871 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1794 1872 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1795 1873 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
1796 1874 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
1797 1875 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
1809 1887 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1812 1890 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1813 1891 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1814 1892 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1815 1893 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1817 1895 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
1818 1896 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
1819 1897 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
1820 1898 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
1821 1899 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
1822 1900 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
1823 1901 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
1824 1902 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
1825 1903 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
1848 1926 9.665719 TGTGCAGAAATACTACTCATTGATAAA 57.334 29.630 0.00 0.00 0.00 1.40
1849 1927 9.098355 GTGTGCAGAAATACTACTCATTGATAA 57.902 33.333 0.00 0.00 0.00 1.75
1911 1989 4.036498 CAGATGGAGGATTGCATTGAGAAC 59.964 45.833 0.00 0.00 35.28 3.01
1913 1991 3.816994 CAGATGGAGGATTGCATTGAGA 58.183 45.455 0.00 0.00 35.28 3.27
1914 1992 2.293677 GCAGATGGAGGATTGCATTGAG 59.706 50.000 0.00 0.00 35.28 3.02
2032 2111 8.455682 ACAAGAGACAAATAAACGAAAACTGAA 58.544 29.630 0.00 0.00 0.00 3.02
2112 2193 6.864360 ACTAGCCTACTACTCAACTATTCG 57.136 41.667 0.00 0.00 0.00 3.34
2137 2298 9.995003 ATACAAATAGGCTTTCAACAAAAATGA 57.005 25.926 0.00 0.00 0.00 2.57
2183 2375 4.255510 ACAATGACCAGGGCATTAGAAT 57.744 40.909 21.09 3.89 34.41 2.40
2199 2391 4.460382 ACCATTTGCTTCTCCAGTACAATG 59.540 41.667 0.00 0.00 0.00 2.82
2284 2542 9.973450 ATATAGATAGTGCGATTATGGAATGAC 57.027 33.333 0.00 0.00 0.00 3.06
2439 2706 3.519107 TGCAAGATTCCAGACTACATGGA 59.481 43.478 0.00 0.00 45.15 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.