Multiple sequence alignment - TraesCS6A01G019400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G019400 chr6A 100.000 8634 0 0 1 8634 9320227 9328860 0.000000e+00 15945.0
1 TraesCS6A01G019400 chr6A 84.152 448 51 11 3028 3474 8210407 8209979 4.820000e-112 416.0
2 TraesCS6A01G019400 chr6A 87.234 188 22 2 3026 3213 8438806 8438621 6.790000e-51 213.0
3 TraesCS6A01G019400 chr6A 89.222 167 15 3 3088 3254 35579326 35579163 1.140000e-48 206.0
4 TraesCS6A01G019400 chr6A 100.000 50 0 0 8585 8634 162445004 162444955 9.230000e-15 93.5
5 TraesCS6A01G019400 chr6B 93.811 7384 311 52 1084 8375 15787696 15780367 0.000000e+00 10970.0
6 TraesCS6A01G019400 chr6B 77.536 828 112 44 3028 3845 14627571 14626808 1.720000e-116 431.0
7 TraesCS6A01G019400 chr6B 86.176 340 36 5 135 474 15790087 15789759 2.960000e-94 357.0
8 TraesCS6A01G019400 chr6B 77.542 659 74 40 3088 3720 15223475 15222865 6.460000e-86 329.0
9 TraesCS6A01G019400 chr6B 84.862 218 28 4 3088 3305 65172867 65172655 1.890000e-51 215.0
10 TraesCS6A01G019400 chr6B 94.845 97 3 2 952 1047 15787882 15787787 5.400000e-32 150.0
11 TraesCS6A01G019400 chr6B 88.421 95 6 2 828 917 15788054 15787960 9.160000e-20 110.0
12 TraesCS6A01G019400 chr6B 90.323 62 6 0 482 543 15789567 15789506 2.000000e-11 82.4
13 TraesCS6A01G019400 chr6D 95.444 6256 201 37 2287 8488 8667076 8660851 0.000000e+00 9897.0
14 TraesCS6A01G019400 chr6D 90.998 1233 84 7 1084 2295 8668468 8667242 0.000000e+00 1637.0
15 TraesCS6A01G019400 chr6D 90.952 630 37 11 4 628 8670695 8670081 0.000000e+00 830.0
16 TraesCS6A01G019400 chr6D 91.156 147 4 1 912 1049 8668724 8668578 3.180000e-44 191.0
17 TraesCS6A01G019400 chr6D 93.966 116 5 2 799 912 8668928 8668813 3.200000e-39 174.0
18 TraesCS6A01G019400 chr4B 94.460 361 17 1 3561 3918 241356356 241356716 3.520000e-153 553.0
19 TraesCS6A01G019400 chr4B 100.000 48 0 0 8587 8634 104440185 104440138 1.190000e-13 89.8
20 TraesCS6A01G019400 chr2A 93.906 361 18 2 3561 3918 160162736 160163095 7.620000e-150 542.0
21 TraesCS6A01G019400 chr2A 93.629 361 20 1 3561 3918 159930332 159930692 3.550000e-148 536.0
22 TraesCS6A01G019400 chr2A 92.063 63 5 0 642 704 608600552 608600614 1.190000e-13 89.8
23 TraesCS6A01G019400 chr1B 80.794 630 77 24 3026 3647 27749896 27749303 3.670000e-123 453.0
24 TraesCS6A01G019400 chr1B 81.046 153 14 6 3862 4003 630647862 630648010 3.300000e-19 108.0
25 TraesCS6A01G019400 chr7A 98.214 56 0 1 639 693 68027915 68027970 7.130000e-16 97.1
26 TraesCS6A01G019400 chr7A 96.610 59 0 2 8576 8634 307374634 307374690 7.130000e-16 97.1
27 TraesCS6A01G019400 chr7A 96.364 55 2 0 642 696 706984903 706984849 3.320000e-14 91.6
28 TraesCS6A01G019400 chr1A 98.182 55 1 0 642 696 534880397 534880343 7.130000e-16 97.1
29 TraesCS6A01G019400 chr1A 98.182 55 1 0 642 696 534899283 534899229 7.130000e-16 97.1
30 TraesCS6A01G019400 chr1A 100.000 50 0 0 8585 8634 44477472 44477521 9.230000e-15 93.5
31 TraesCS6A01G019400 chr1A 100.000 48 0 0 8587 8634 152745115 152745162 1.190000e-13 89.8
32 TraesCS6A01G019400 chr5A 100.000 51 0 0 8584 8634 494285244 494285294 2.570000e-15 95.3
33 TraesCS6A01G019400 chr3B 95.000 60 3 0 642 701 145960229 145960288 2.570000e-15 95.3
34 TraesCS6A01G019400 chr3B 98.039 51 1 0 8584 8634 20099475 20099525 1.190000e-13 89.8
35 TraesCS6A01G019400 chr2D 94.915 59 3 0 642 700 355449121 355449179 9.230000e-15 93.5
36 TraesCS6A01G019400 chr4A 96.364 55 2 0 642 696 595849351 595849405 3.320000e-14 91.6
37 TraesCS6A01G019400 chr3A 92.188 64 5 0 637 700 359073286 359073349 3.320000e-14 91.6
38 TraesCS6A01G019400 chr2B 100.000 49 0 0 8585 8633 790520067 790520019 3.320000e-14 91.6
39 TraesCS6A01G019400 chr7B 98.039 51 1 0 8584 8634 272691897 272691847 1.190000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G019400 chr6A 9320227 9328860 8633 False 15945.00 15945 100.0000 1 8634 1 chr6A.!!$F1 8633
1 TraesCS6A01G019400 chr6B 15780367 15790087 9720 True 2333.88 10970 90.7152 135 8375 5 chr6B.!!$R4 8240
2 TraesCS6A01G019400 chr6B 14626808 14627571 763 True 431.00 431 77.5360 3028 3845 1 chr6B.!!$R1 817
3 TraesCS6A01G019400 chr6B 15222865 15223475 610 True 329.00 329 77.5420 3088 3720 1 chr6B.!!$R2 632
4 TraesCS6A01G019400 chr6D 8660851 8670695 9844 True 2545.80 9897 92.5032 4 8488 5 chr6D.!!$R1 8484
5 TraesCS6A01G019400 chr1B 27749303 27749896 593 True 453.00 453 80.7940 3026 3647 1 chr1B.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 731 0.892358 ACTTGCAGGCTCATGGTGTG 60.892 55.000 0.00 0.0 0.00 3.82 F
778 2278 0.982704 CTATCCATGGGAGGGAGCAG 59.017 60.000 13.02 0.0 37.96 4.24 F
2244 4002 0.544697 CCGGTAACCAGGGCAGTTAT 59.455 55.000 0.00 0.0 32.62 1.89 F
2346 4278 2.040278 CAAGGGATTCACTCCTTCCACA 59.960 50.000 0.00 0.0 44.28 4.17 F
2389 4321 2.308690 GATCTGGTACTTCTACGGGCT 58.691 52.381 0.00 0.0 0.00 5.19 F
3839 5817 2.504367 TCAGCTGGAACCTAGCAAAAC 58.496 47.619 15.13 0.0 43.53 2.43 F
4376 6355 0.466543 TGGTGGTGCAGTTCTACGTT 59.533 50.000 0.00 0.0 0.00 3.99 F
4457 6436 1.093159 GCCTTCTCATTGCTGGTCAG 58.907 55.000 0.00 0.0 0.00 3.51 F
6155 8162 1.575922 CACACCATCCGCAACACTG 59.424 57.895 0.00 0.0 0.00 3.66 F
7166 9173 1.045407 GTCTGTGACACCACCTACCA 58.955 55.000 2.45 0.0 42.53 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 3798 0.590195 GACTGATGGATTCGGCATGC 59.410 55.000 9.90 9.90 33.65 4.06 R
2366 4298 1.962100 CCGTAGAAGTACCAGATCCCC 59.038 57.143 0.00 0.00 0.00 4.81 R
3930 5908 1.142748 CTGCCATCTCTGGACCGTC 59.857 63.158 0.00 0.00 46.37 4.79 R
4059 6037 2.710377 TGGCATGACACAGGATACAAC 58.290 47.619 0.00 0.00 41.41 3.32 R
4186 6164 2.906389 ACAGTTGACCTTCCTGAGCATA 59.094 45.455 0.00 0.00 0.00 3.14 R
5503 7503 1.069432 GGCTACGCAAGATCATGCATG 60.069 52.381 21.07 21.07 46.76 4.06 R
5991 7998 0.031111 AGGGGCATACCTCAGCTACA 60.031 55.000 0.00 0.00 39.93 2.74 R
6260 8267 1.033746 AATGCACTGAAGGGGATGCG 61.034 55.000 0.00 0.00 41.07 4.73 R
7558 9565 0.107897 TGCTGTTGGAACGACTGTGT 60.108 50.000 0.00 0.00 0.00 3.72 R
8046 10057 0.185175 GAGGGGGTGAACTGGTTTGT 59.815 55.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.706802 TGCTCTCTTCTAGAAGCGATG 57.293 47.619 25.04 18.10 38.28 3.84
37 38 3.020274 TGCTCTCTTCTAGAAGCGATGT 58.980 45.455 25.04 0.00 38.28 3.06
38 39 3.181492 TGCTCTCTTCTAGAAGCGATGTG 60.181 47.826 25.04 14.64 38.28 3.21
51 52 1.802880 GCGATGTGGTGGTAGTAGCAG 60.803 57.143 1.37 0.00 0.00 4.24
78 79 1.107538 ATGCTGATGTGGATGCTGGC 61.108 55.000 0.00 0.00 0.00 4.85
152 156 2.546373 CCAGCATGTGTCTTTTGGTTGG 60.546 50.000 0.00 0.00 0.00 3.77
189 193 4.363999 CTGTGGTTGCAATTTAAAACGGA 58.636 39.130 0.59 0.00 0.00 4.69
199 203 5.181433 GCAATTTAAAACGGAGTCCTCTCTT 59.819 40.000 7.77 0.00 45.00 2.85
265 269 5.218139 GCTGTTTTCAATCTCACTTTCTGG 58.782 41.667 0.00 0.00 0.00 3.86
305 309 5.448904 GCTGCTTTCAATTTCTTTTTGGCAA 60.449 36.000 0.00 0.00 0.00 4.52
343 347 4.013728 TCCTAGTTATGCCGCACAATTTT 58.986 39.130 0.00 0.00 0.00 1.82
405 409 2.364323 TAACACCAACCCCCTCCCCT 62.364 60.000 0.00 0.00 0.00 4.79
406 410 2.126372 CACCAACCCCCTCCCCTA 59.874 66.667 0.00 0.00 0.00 3.53
407 411 2.126603 ACCAACCCCCTCCCCTAC 59.873 66.667 0.00 0.00 0.00 3.18
408 412 2.459710 CCAACCCCCTCCCCTACT 59.540 66.667 0.00 0.00 0.00 2.57
409 413 1.164288 ACCAACCCCCTCCCCTACTA 61.164 60.000 0.00 0.00 0.00 1.82
459 465 5.067153 TGCGTAATCTTTTCATACAATGGGG 59.933 40.000 0.00 0.00 0.00 4.96
474 480 4.144297 CAATGGGGGTATGTCAATGTAGG 58.856 47.826 0.00 0.00 0.00 3.18
476 482 2.775384 TGGGGGTATGTCAATGTAGGAC 59.225 50.000 0.00 0.00 35.83 3.85
477 483 3.046374 GGGGGTATGTCAATGTAGGACT 58.954 50.000 0.00 0.00 36.26 3.85
478 484 3.071167 GGGGGTATGTCAATGTAGGACTC 59.929 52.174 0.00 0.00 36.26 3.36
518 711 7.113658 TGTTGTGCCTAATTGTTTTCCTTTA 57.886 32.000 0.00 0.00 0.00 1.85
519 712 7.556844 TGTTGTGCCTAATTGTTTTCCTTTAA 58.443 30.769 0.00 0.00 0.00 1.52
527 720 7.384932 CCTAATTGTTTTCCTTTAACTTGCAGG 59.615 37.037 0.00 0.00 0.00 4.85
538 731 0.892358 ACTTGCAGGCTCATGGTGTG 60.892 55.000 0.00 0.00 0.00 3.82
558 751 6.349611 GGTGTGCATATTTTTGAGACTCATGT 60.350 38.462 5.87 0.00 0.00 3.21
575 768 9.587772 AGACTCATGTTGTACATACATTAGAAC 57.412 33.333 23.90 19.14 36.53 3.01
614 807 8.260818 AGTACTATTAGAAGTGTGTGCAATGAT 58.739 33.333 0.00 0.00 0.00 2.45
642 835 6.984474 TCTCAATGTTTGTAAGACGTCTTCTT 59.016 34.615 32.86 13.78 46.91 2.52
644 837 7.627340 TCAATGTTTGTAAGACGTCTTCTTTC 58.373 34.615 32.86 20.71 42.37 2.62
645 838 5.978934 TGTTTGTAAGACGTCTTCTTTCC 57.021 39.130 32.86 19.13 42.37 3.13
646 839 5.667466 TGTTTGTAAGACGTCTTCTTTCCT 58.333 37.500 32.86 11.46 42.37 3.36
649 842 6.395426 TTGTAAGACGTCTTCTTTCCTACA 57.605 37.500 32.86 24.93 42.37 2.74
650 843 6.395426 TGTAAGACGTCTTCTTTCCTACAA 57.605 37.500 32.86 9.94 42.37 2.41
651 844 6.808829 TGTAAGACGTCTTCTTTCCTACAAA 58.191 36.000 32.86 9.40 42.37 2.83
652 845 7.267128 TGTAAGACGTCTTCTTTCCTACAAAA 58.733 34.615 32.86 9.20 42.37 2.44
654 847 7.803279 AAGACGTCTTCTTTCCTACAAAATT 57.197 32.000 24.93 0.00 42.37 1.82
655 848 7.422878 AGACGTCTTCTTTCCTACAAAATTC 57.577 36.000 13.58 0.00 0.00 2.17
656 849 6.427242 AGACGTCTTCTTTCCTACAAAATTCC 59.573 38.462 13.58 0.00 0.00 3.01
658 851 7.447594 ACGTCTTCTTTCCTACAAAATTCCTA 58.552 34.615 0.00 0.00 0.00 2.94
662 855 9.462606 TCTTCTTTCCTACAAAATTCCTATTCC 57.537 33.333 0.00 0.00 0.00 3.01
665 858 9.901172 TCTTTCCTACAAAATTCCTATTCCTAC 57.099 33.333 0.00 0.00 0.00 3.18
666 859 9.681062 CTTTCCTACAAAATTCCTATTCCTACA 57.319 33.333 0.00 0.00 0.00 2.74
687 880 9.046846 CCTACAATAATCCTATCCTATGAACCA 57.953 37.037 0.00 0.00 0.00 3.67
694 887 8.986929 AATCCTATCCTATGAACCAAAAGAAG 57.013 34.615 0.00 0.00 0.00 2.85
695 888 6.357367 TCCTATCCTATGAACCAAAAGAAGC 58.643 40.000 0.00 0.00 0.00 3.86
697 890 6.774656 CCTATCCTATGAACCAAAAGAAGCAT 59.225 38.462 0.00 0.00 0.00 3.79
702 895 9.693739 TCCTATGAACCAAAAGAAGCATAATAA 57.306 29.630 0.00 0.00 0.00 1.40
749 2245 8.044060 TGAGATGTATAAAAGCCAAAACAGAG 57.956 34.615 0.00 0.00 0.00 3.35
751 2247 5.975693 TGTATAAAAGCCAAAACAGAGGG 57.024 39.130 0.00 0.00 0.00 4.30
755 2251 4.835284 AAAAGCCAAAACAGAGGGAAAA 57.165 36.364 0.00 0.00 0.00 2.29
756 2252 5.372343 AAAAGCCAAAACAGAGGGAAAAT 57.628 34.783 0.00 0.00 0.00 1.82
757 2253 4.607293 AAGCCAAAACAGAGGGAAAATC 57.393 40.909 0.00 0.00 0.00 2.17
758 2254 2.899900 AGCCAAAACAGAGGGAAAATCC 59.100 45.455 0.00 0.00 35.23 3.01
778 2278 0.982704 CTATCCATGGGAGGGAGCAG 59.017 60.000 13.02 0.00 37.96 4.24
779 2279 1.130054 TATCCATGGGAGGGAGCAGC 61.130 60.000 13.02 0.00 37.96 5.25
789 2289 0.990374 AGGGAGCAGCAAGAGTGAAT 59.010 50.000 0.00 0.00 0.00 2.57
793 2293 2.008329 GAGCAGCAAGAGTGAATGAGG 58.992 52.381 0.00 0.00 0.00 3.86
794 2294 1.350351 AGCAGCAAGAGTGAATGAGGT 59.650 47.619 0.00 0.00 0.00 3.85
806 2333 5.660460 AGTGAATGAGGTGGAAAACAAAAC 58.340 37.500 0.00 0.00 0.00 2.43
812 2339 4.693095 TGAGGTGGAAAACAAAACAAAAGC 59.307 37.500 0.00 0.00 0.00 3.51
829 2356 4.479993 CAAGCTCGGGGCAGGGAG 62.480 72.222 1.17 0.00 44.79 4.30
830 2357 4.722535 AAGCTCGGGGCAGGGAGA 62.723 66.667 1.17 0.00 44.79 3.71
915 2544 4.119363 TGAGCCAGCCAGCCCATC 62.119 66.667 0.00 0.00 0.00 3.51
950 2579 3.996124 CTAGATCCGCGCCCCCAG 61.996 72.222 0.00 0.00 0.00 4.45
1213 2947 2.591715 ACACCACGGTCAAGCAGC 60.592 61.111 0.00 0.00 0.00 5.25
1386 3141 2.673523 CAGGACTTGGCCCAGGAG 59.326 66.667 8.98 0.00 0.00 3.69
1545 3300 1.003580 CAGCAGTGGTACCAGGTTGAT 59.996 52.381 16.93 10.34 0.00 2.57
1610 3365 3.316308 CACTTTGGTGCTTCTTACTTGCT 59.684 43.478 0.00 0.00 36.61 3.91
1614 3369 3.754965 TGGTGCTTCTTACTTGCTGAAT 58.245 40.909 0.00 0.00 0.00 2.57
1725 3480 1.382522 CGGCCAACATGCTGTTCTAT 58.617 50.000 2.24 0.00 38.77 1.98
1728 3483 1.202336 GCCAACATGCTGTTCTATGCC 60.202 52.381 0.00 0.00 38.77 4.40
1808 3563 2.441532 GCAGGCCATCATGCAGGT 60.442 61.111 5.01 0.00 42.11 4.00
1810 3565 2.184830 CAGGCCATCATGCAGGTCG 61.185 63.158 5.01 0.00 33.85 4.79
1868 3623 1.453015 TTGTTGCGCCTTCTGGTGT 60.453 52.632 4.18 0.00 45.25 4.16
1913 3668 1.071385 AGAGGTTCCTGCTGTCAACAG 59.929 52.381 5.77 5.77 46.40 3.16
1997 3755 4.460382 CAGTATTCAACCTGAAAGTGCCAT 59.540 41.667 0.00 0.00 40.12 4.40
2028 3786 2.092914 GGCAGGTAGTTTCTATGGTGCT 60.093 50.000 0.00 0.00 0.00 4.40
2058 3816 1.162181 CGCATGCCGAATCCATCAGT 61.162 55.000 13.15 0.00 40.02 3.41
2118 3876 6.068010 TGAAACTTCCACAAGTCATTATGGT 58.932 36.000 0.00 0.00 42.45 3.55
2226 3984 1.078143 GGTGCTCCAGTCATCCACC 60.078 63.158 0.00 0.00 39.14 4.61
2244 4002 0.544697 CCGGTAACCAGGGCAGTTAT 59.455 55.000 0.00 0.00 32.62 1.89
2346 4278 2.040278 CAAGGGATTCACTCCTTCCACA 59.960 50.000 0.00 0.00 44.28 4.17
2389 4321 2.308690 GATCTGGTACTTCTACGGGCT 58.691 52.381 0.00 0.00 0.00 5.19
2542 4474 5.768164 GGATTTGGAACTTCTACAAACCAGA 59.232 40.000 0.00 0.00 36.98 3.86
2570 4502 3.319755 GTGATGCCAATGGTTTTGTCAG 58.680 45.455 0.00 0.00 0.00 3.51
2688 4620 4.020662 ACTGAGAACTCCATGAACTTCTCC 60.021 45.833 16.97 6.39 38.49 3.71
2745 4677 3.568007 TGCAATTTGGTTACTCTCCACAC 59.432 43.478 0.00 0.00 34.45 3.82
2751 4683 2.960384 TGGTTACTCTCCACACGAAGAA 59.040 45.455 0.00 0.00 0.00 2.52
2760 4692 3.996363 CTCCACACGAAGAAATGTCATCA 59.004 43.478 0.00 0.00 0.00 3.07
3010 4942 9.793259 TCTGTTCTTAATTTATCAGAGGTTGTT 57.207 29.630 0.00 0.00 0.00 2.83
3013 4945 7.391148 TCTTAATTTATCAGAGGTTGTTGCC 57.609 36.000 0.00 0.00 0.00 4.52
3022 4954 3.502211 CAGAGGTTGTTGCCGATAAAGTT 59.498 43.478 0.00 0.00 0.00 2.66
3487 5426 4.576053 GTGATAATGCCACATAGTGCAAGA 59.424 41.667 0.00 0.00 34.81 3.02
3497 5436 7.339212 TGCCACATAGTGCAAGAAAACTAATAT 59.661 33.333 0.00 0.00 32.84 1.28
3591 5536 3.954258 GGTATTATTGCCTGGCCATATCC 59.046 47.826 17.53 13.14 0.00 2.59
3624 5569 4.839668 TTTACATTTTCCACTCCGTTGG 57.160 40.909 0.00 0.00 38.10 3.77
3823 5798 8.237949 TCTAACTCGTCTTAGCAATATATCAGC 58.762 37.037 2.70 2.70 0.00 4.26
3839 5817 2.504367 TCAGCTGGAACCTAGCAAAAC 58.496 47.619 15.13 0.00 43.53 2.43
3842 5820 3.319122 CAGCTGGAACCTAGCAAAACTTT 59.681 43.478 5.57 0.00 43.53 2.66
3858 5836 9.248291 AGCAAAACTTTATTGTTGAGTAACATG 57.752 29.630 0.00 0.00 45.56 3.21
4028 6006 4.981674 TCGAATGTTCCTTTCATGCAAAAC 59.018 37.500 0.00 0.00 0.00 2.43
4042 6020 2.892852 TGCAAAACATCCCCTCTGAAAG 59.107 45.455 0.00 0.00 0.00 2.62
4059 6037 4.318332 TGAAAGTCAGATGCAGGTACTTG 58.682 43.478 0.00 0.00 34.60 3.16
4062 6040 3.668447 AGTCAGATGCAGGTACTTGTTG 58.332 45.455 6.86 1.55 34.60 3.33
4263 6241 7.079182 TGGCGATAATGTTAGTTTAACTTGG 57.921 36.000 1.94 0.00 39.38 3.61
4266 6244 8.024865 GGCGATAATGTTAGTTTAACTTGGTTT 58.975 33.333 1.94 0.00 39.38 3.27
4285 6263 6.492254 TGGTTTAGCTTCTTTCTTTCGTTTC 58.508 36.000 0.00 0.00 0.00 2.78
4334 6312 4.291249 TGGTTTCCAGCTCCCTAAATTAGT 59.709 41.667 0.00 0.00 0.00 2.24
4335 6313 5.222254 TGGTTTCCAGCTCCCTAAATTAGTT 60.222 40.000 0.00 0.00 0.00 2.24
4376 6355 0.466543 TGGTGGTGCAGTTCTACGTT 59.533 50.000 0.00 0.00 0.00 3.99
4457 6436 1.093159 GCCTTCTCATTGCTGGTCAG 58.907 55.000 0.00 0.00 0.00 3.51
4637 6616 8.993121 ACTGTCTTTCTCATGTTGTTATGTAAG 58.007 33.333 0.00 0.00 0.00 2.34
4672 6652 5.767168 CCCCCTGTTCAGATATTTTCTCATC 59.233 44.000 1.00 0.00 29.93 2.92
4675 6655 8.159447 CCCCTGTTCAGATATTTTCTCATCATA 58.841 37.037 1.00 0.00 29.93 2.15
4676 6656 9.565090 CCCTGTTCAGATATTTTCTCATCATAA 57.435 33.333 1.00 0.00 29.93 1.90
4751 6740 1.649321 AGCTTGACTCTGATCCCACA 58.351 50.000 0.00 0.00 0.00 4.17
4822 6811 7.740805 TGGTGTATGTATGGCTATTTGTCATA 58.259 34.615 0.00 0.00 41.79 2.15
4870 6859 8.492673 TCTTATTTATTGGTTACTGCACTGAG 57.507 34.615 0.00 0.00 0.00 3.35
4916 6905 7.701539 TTACTAGTGTCACGGGTTCTAAATA 57.298 36.000 5.39 0.00 0.00 1.40
4951 6940 9.822185 AAAAATGATTGCCCTTTTACTATCATC 57.178 29.630 0.00 0.00 37.63 2.92
4966 6955 9.974980 TTTACTATCATCGCATGTATCAGTTAA 57.025 29.630 0.00 0.00 0.00 2.01
4992 6991 7.807977 ACTTCTGAATTTCTGCTTAACTTGA 57.192 32.000 0.00 0.00 0.00 3.02
5018 7017 5.465724 ACTGACTTCATAACTTCGTGTTTCC 59.534 40.000 2.43 0.00 39.89 3.13
5221 7220 4.141711 TGTGATCAAGTACCTTATGGAGCC 60.142 45.833 0.00 0.00 37.04 4.70
5316 7315 1.599542 GCTCGGTTATGTCTCATTGGC 59.400 52.381 0.00 0.00 0.00 4.52
5518 7518 3.364664 GGATACACATGCATGATCTTGCG 60.365 47.826 32.75 15.25 45.77 4.85
5627 7630 5.914898 ATACAAAGGTGCTTGGTAATTCC 57.085 39.130 0.00 0.00 34.12 3.01
5966 7971 9.840427 AATTATAATATTTGCGTATGCTGTTCC 57.160 29.630 8.69 0.00 43.34 3.62
5967 7972 8.615878 TTATAATATTTGCGTATGCTGTTCCT 57.384 30.769 8.69 0.00 43.34 3.36
5968 7973 9.713713 TTATAATATTTGCGTATGCTGTTCCTA 57.286 29.630 8.69 0.00 43.34 2.94
5980 7987 5.178096 TGCTGTTCCTAGATTCCAAATCA 57.822 39.130 0.00 0.00 0.00 2.57
5990 7997 5.988310 AGATTCCAAATCATGTTCTGCAA 57.012 34.783 2.79 0.00 0.00 4.08
5991 7998 6.540438 AGATTCCAAATCATGTTCTGCAAT 57.460 33.333 2.79 0.00 0.00 3.56
6003 8010 3.260632 TGTTCTGCAATGTAGCTGAGGTA 59.739 43.478 0.00 0.00 42.23 3.08
6007 8014 1.876156 GCAATGTAGCTGAGGTATGCC 59.124 52.381 0.00 0.00 0.00 4.40
6035 8042 5.350640 CCTTCGTTAATCACTAACCCACTTC 59.649 44.000 0.00 0.00 37.22 3.01
6155 8162 1.575922 CACACCATCCGCAACACTG 59.424 57.895 0.00 0.00 0.00 3.66
6230 8237 5.553721 GCAGCTGCAAAATTTGTAAATAGC 58.446 37.500 33.36 9.42 41.59 2.97
6374 8381 2.159296 AGACTTCGGCAAAACACCAAAC 60.159 45.455 0.00 0.00 0.00 2.93
6475 8482 3.876274 TGATTCTCCCTTCTCACTTCG 57.124 47.619 0.00 0.00 0.00 3.79
6650 8657 7.080099 CACCATTGTTCAGTTTGTCTTATCTG 58.920 38.462 0.00 0.00 0.00 2.90
6656 8663 7.161404 TGTTCAGTTTGTCTTATCTGCATAGT 58.839 34.615 0.00 0.00 0.00 2.12
6852 8859 7.162082 CCAGACTATAACTTAAATGGCCCTAG 58.838 42.308 0.00 0.00 0.00 3.02
6905 8912 5.765182 ACAGAACGAAGATCTCCAAAACATT 59.235 36.000 0.00 0.00 37.64 2.71
6972 8979 4.650740 CAGTTTTCTGCTCGTGGACGAAT 61.651 47.826 3.12 0.00 42.28 3.34
6997 9004 1.553704 GTCCGGTCCAGGTATTTCAGT 59.446 52.381 0.00 0.00 0.00 3.41
6999 9006 3.028850 TCCGGTCCAGGTATTTCAGTAG 58.971 50.000 0.00 0.00 0.00 2.57
7003 9010 4.099573 CGGTCCAGGTATTTCAGTAGTGAT 59.900 45.833 0.00 0.00 30.85 3.06
7166 9173 1.045407 GTCTGTGACACCACCTACCA 58.955 55.000 2.45 0.00 42.53 3.25
7167 9174 1.623811 GTCTGTGACACCACCTACCAT 59.376 52.381 2.45 0.00 42.53 3.55
7168 9175 2.829720 GTCTGTGACACCACCTACCATA 59.170 50.000 2.45 0.00 42.53 2.74
7471 9478 4.395625 CAGCATCATGGAGTGGAACATAT 58.604 43.478 0.00 0.00 44.52 1.78
7630 9637 2.427453 GGATCTTCACGAGGTTGAGCTA 59.573 50.000 0.00 0.00 0.00 3.32
7703 9710 2.379972 CCACACAACCTTGGTTAACCA 58.620 47.619 23.69 23.69 45.94 3.67
7789 9796 2.573009 TGATGATTGCCAGGACAGAGAA 59.427 45.455 0.00 0.00 0.00 2.87
7846 9853 2.188161 GGAAACCGCACCGAAACCA 61.188 57.895 0.00 0.00 0.00 3.67
7950 9958 1.474478 CTAGAGCGCAGGAGAACAGAA 59.526 52.381 11.47 0.00 0.00 3.02
7953 9961 1.301716 GCGCAGGAGAACAGAACCA 60.302 57.895 0.30 0.00 0.00 3.67
8010 10019 3.054139 ACATCTGGATGCCATTGTACAGT 60.054 43.478 10.13 0.00 42.39 3.55
8023 10032 3.520290 TGTACAGTTAATCCGCCTCTG 57.480 47.619 0.00 0.00 0.00 3.35
8027 10038 1.526225 GTTAATCCGCCTCTGCCCC 60.526 63.158 0.00 0.00 0.00 5.80
8046 10057 1.737236 CCGATTCATTGTTCGAAGGCA 59.263 47.619 0.00 0.00 37.55 4.75
8185 10218 4.207599 GTTGTTGTTGTTGTTGTTGTTGC 58.792 39.130 0.00 0.00 0.00 4.17
8318 10360 2.636830 CCCCTTGTGAGTTGATAGCTG 58.363 52.381 0.00 0.00 0.00 4.24
8320 10362 3.197766 CCCCTTGTGAGTTGATAGCTGTA 59.802 47.826 0.00 0.00 0.00 2.74
8324 10366 6.406961 CCCTTGTGAGTTGATAGCTGTATGTA 60.407 42.308 0.00 0.00 0.00 2.29
8325 10367 7.212976 CCTTGTGAGTTGATAGCTGTATGTAT 58.787 38.462 0.00 0.00 0.00 2.29
8369 10415 4.735369 TCTTGGTTGGTGTGGTTTGATAT 58.265 39.130 0.00 0.00 0.00 1.63
8375 10421 8.651589 TGGTTGGTGTGGTTTGATATAATTTA 57.348 30.769 0.00 0.00 0.00 1.40
8385 10431 8.286800 TGGTTTGATATAATTTAGTGTATGCGC 58.713 33.333 0.00 0.00 0.00 6.09
8399 10445 0.670162 ATGCGCTCTTTGTTGCTTGT 59.330 45.000 9.73 0.00 0.00 3.16
8400 10446 0.248580 TGCGCTCTTTGTTGCTTGTG 60.249 50.000 9.73 0.00 0.00 3.33
8401 10447 0.029300 GCGCTCTTTGTTGCTTGTGA 59.971 50.000 0.00 0.00 0.00 3.58
8403 10449 1.597937 CGCTCTTTGTTGCTTGTGACC 60.598 52.381 0.00 0.00 0.00 4.02
8404 10450 1.269257 GCTCTTTGTTGCTTGTGACCC 60.269 52.381 0.00 0.00 0.00 4.46
8406 10452 2.426738 CTCTTTGTTGCTTGTGACCCAA 59.573 45.455 0.00 0.00 0.00 4.12
8407 10453 2.828520 TCTTTGTTGCTTGTGACCCAAA 59.171 40.909 0.00 0.00 31.20 3.28
8408 10454 3.450457 TCTTTGTTGCTTGTGACCCAAAT 59.550 39.130 0.00 0.00 31.20 2.32
8410 10456 3.902881 TGTTGCTTGTGACCCAAATTT 57.097 38.095 0.00 0.00 31.20 1.82
8411 10457 3.529533 TGTTGCTTGTGACCCAAATTTG 58.470 40.909 11.40 11.40 31.20 2.32
8412 10458 3.196469 TGTTGCTTGTGACCCAAATTTGA 59.804 39.130 19.86 0.00 31.20 2.69
8438 10484 2.279935 TGGTGTGGGGTTTGTGATAC 57.720 50.000 0.00 0.00 0.00 2.24
8452 10498 7.057894 GGTTTGTGATACCCTGAATTATACCA 58.942 38.462 0.00 0.00 0.00 3.25
8454 10500 8.403236 GTTTGTGATACCCTGAATTATACCAAC 58.597 37.037 0.00 0.00 0.00 3.77
8455 10501 6.285224 TGTGATACCCTGAATTATACCAACG 58.715 40.000 0.00 0.00 0.00 4.10
8458 10504 4.847990 ACCCTGAATTATACCAACGGAA 57.152 40.909 0.00 0.00 0.00 4.30
8459 10505 4.777463 ACCCTGAATTATACCAACGGAAG 58.223 43.478 0.00 0.00 0.00 3.46
8460 10506 4.472108 ACCCTGAATTATACCAACGGAAGA 59.528 41.667 0.00 0.00 0.00 2.87
8461 10507 4.814771 CCCTGAATTATACCAACGGAAGAC 59.185 45.833 0.00 0.00 0.00 3.01
8462 10508 4.814771 CCTGAATTATACCAACGGAAGACC 59.185 45.833 0.00 0.00 0.00 3.85
8463 10509 5.396436 CCTGAATTATACCAACGGAAGACCT 60.396 44.000 0.00 0.00 0.00 3.85
8464 10510 6.057321 TGAATTATACCAACGGAAGACCTT 57.943 37.500 0.00 0.00 0.00 3.50
8465 10511 7.185318 TGAATTATACCAACGGAAGACCTTA 57.815 36.000 0.00 0.00 0.00 2.69
8466 10512 7.798071 TGAATTATACCAACGGAAGACCTTAT 58.202 34.615 0.00 0.00 0.00 1.73
8467 10513 7.713507 TGAATTATACCAACGGAAGACCTTATG 59.286 37.037 0.00 0.00 0.00 1.90
8468 10514 6.795144 TTATACCAACGGAAGACCTTATGA 57.205 37.500 0.00 0.00 0.00 2.15
8469 10515 5.888982 ATACCAACGGAAGACCTTATGAT 57.111 39.130 0.00 0.00 0.00 2.45
8470 10516 4.569719 ACCAACGGAAGACCTTATGATT 57.430 40.909 0.00 0.00 0.00 2.57
8471 10517 4.514401 ACCAACGGAAGACCTTATGATTC 58.486 43.478 0.00 0.00 0.00 2.52
8472 10518 4.019681 ACCAACGGAAGACCTTATGATTCA 60.020 41.667 0.00 0.00 0.00 2.57
8473 10519 4.332819 CCAACGGAAGACCTTATGATTCAC 59.667 45.833 0.00 0.00 0.00 3.18
8474 10520 4.138487 ACGGAAGACCTTATGATTCACC 57.862 45.455 0.00 0.00 0.00 4.02
8475 10521 3.123804 CGGAAGACCTTATGATTCACCG 58.876 50.000 0.00 0.00 0.00 4.94
8476 10522 3.181479 CGGAAGACCTTATGATTCACCGA 60.181 47.826 0.00 0.00 39.11 4.69
8477 10523 4.120589 GGAAGACCTTATGATTCACCGAC 58.879 47.826 0.00 0.00 0.00 4.79
8478 10524 4.141914 GGAAGACCTTATGATTCACCGACT 60.142 45.833 0.00 0.00 0.00 4.18
8479 10525 5.420409 GAAGACCTTATGATTCACCGACTT 58.580 41.667 0.00 0.00 0.00 3.01
8480 10526 6.406624 GGAAGACCTTATGATTCACCGACTTA 60.407 42.308 0.00 0.00 0.00 2.24
8481 10527 6.732896 AGACCTTATGATTCACCGACTTAT 57.267 37.500 0.00 0.00 0.00 1.73
8482 10528 6.516718 AGACCTTATGATTCACCGACTTATG 58.483 40.000 0.00 0.00 0.00 1.90
8483 10529 6.098409 AGACCTTATGATTCACCGACTTATGT 59.902 38.462 0.00 0.00 0.00 2.29
8484 10530 6.049149 ACCTTATGATTCACCGACTTATGTG 58.951 40.000 0.00 0.00 0.00 3.21
8485 10531 6.049149 CCTTATGATTCACCGACTTATGTGT 58.951 40.000 0.00 0.00 34.14 3.72
8486 10532 6.201044 CCTTATGATTCACCGACTTATGTGTC 59.799 42.308 0.00 0.00 34.14 3.67
8498 10544 2.832643 TATGTGTCGGGGACTCCTTA 57.167 50.000 0.00 0.00 33.15 2.69
8509 10555 2.698797 GGGACTCCTTATGATTCACCGA 59.301 50.000 0.00 0.00 0.00 4.69
8520 10566 4.443913 TGATTCACCGACTTATGTTCGA 57.556 40.909 0.00 0.00 0.00 3.71
8521 10567 5.006153 TGATTCACCGACTTATGTTCGAT 57.994 39.130 0.00 0.00 0.00 3.59
8522 10568 4.803613 TGATTCACCGACTTATGTTCGATG 59.196 41.667 0.00 0.00 0.00 3.84
8523 10569 2.536365 TCACCGACTTATGTTCGATGC 58.464 47.619 0.00 0.00 0.00 3.91
8524 10570 2.165641 TCACCGACTTATGTTCGATGCT 59.834 45.455 0.00 0.00 0.00 3.79
8525 10571 2.535984 CACCGACTTATGTTCGATGCTC 59.464 50.000 0.00 0.00 0.00 4.26
8526 10572 1.781429 CCGACTTATGTTCGATGCTCG 59.219 52.381 0.00 0.00 42.10 5.03
8527 10573 1.781429 CGACTTATGTTCGATGCTCGG 59.219 52.381 5.87 0.00 40.88 4.63
8528 10574 2.540973 CGACTTATGTTCGATGCTCGGA 60.541 50.000 5.87 0.00 40.88 4.55
8532 10578 3.984241 GTTCGATGCTCGGACTCG 58.016 61.111 9.04 0.00 44.62 4.18
8533 10579 1.136984 GTTCGATGCTCGGACTCGT 59.863 57.895 9.04 0.00 44.62 4.18
8534 10580 0.456312 GTTCGATGCTCGGACTCGTT 60.456 55.000 9.04 0.00 44.62 3.85
8535 10581 0.456142 TTCGATGCTCGGACTCGTTG 60.456 55.000 5.87 0.00 40.88 4.10
8536 10582 2.508891 CGATGCTCGGACTCGTTGC 61.509 63.158 0.00 0.00 36.00 4.17
8537 10583 1.153745 GATGCTCGGACTCGTTGCT 60.154 57.895 0.00 0.00 37.62 3.91
8538 10584 0.100682 GATGCTCGGACTCGTTGCTA 59.899 55.000 0.00 0.00 37.62 3.49
8539 10585 0.530744 ATGCTCGGACTCGTTGCTAA 59.469 50.000 0.00 0.00 37.62 3.09
8540 10586 0.530744 TGCTCGGACTCGTTGCTAAT 59.469 50.000 0.00 0.00 37.62 1.73
8541 10587 0.924090 GCTCGGACTCGTTGCTAATG 59.076 55.000 0.00 0.00 37.69 1.90
8542 10588 1.469251 GCTCGGACTCGTTGCTAATGA 60.469 52.381 0.00 0.00 37.69 2.57
8543 10589 2.876091 CTCGGACTCGTTGCTAATGAA 58.124 47.619 0.00 0.00 37.69 2.57
8544 10590 3.448686 CTCGGACTCGTTGCTAATGAAT 58.551 45.455 0.00 0.00 37.69 2.57
8545 10591 3.857052 TCGGACTCGTTGCTAATGAATT 58.143 40.909 0.00 0.00 37.69 2.17
8546 10592 5.001237 TCGGACTCGTTGCTAATGAATTA 57.999 39.130 0.00 0.00 37.69 1.40
8547 10593 5.597806 TCGGACTCGTTGCTAATGAATTAT 58.402 37.500 0.00 0.00 37.69 1.28
8548 10594 5.462068 TCGGACTCGTTGCTAATGAATTATG 59.538 40.000 0.00 0.00 37.69 1.90
8549 10595 5.444122 GGACTCGTTGCTAATGAATTATGC 58.556 41.667 0.00 0.00 0.00 3.14
8550 10596 5.007626 GGACTCGTTGCTAATGAATTATGCA 59.992 40.000 0.00 0.00 0.00 3.96
8551 10597 6.435430 ACTCGTTGCTAATGAATTATGCAA 57.565 33.333 12.11 12.11 35.78 4.08
8552 10598 6.489675 ACTCGTTGCTAATGAATTATGCAAG 58.510 36.000 14.62 9.46 37.22 4.01
8553 10599 6.094048 ACTCGTTGCTAATGAATTATGCAAGT 59.906 34.615 14.62 9.85 37.22 3.16
8554 10600 6.257423 TCGTTGCTAATGAATTATGCAAGTG 58.743 36.000 14.62 12.00 37.22 3.16
8555 10601 5.456497 CGTTGCTAATGAATTATGCAAGTGG 59.544 40.000 14.62 8.10 37.22 4.00
8556 10602 5.518848 TGCTAATGAATTATGCAAGTGGG 57.481 39.130 0.00 0.00 0.00 4.61
8557 10603 5.199723 TGCTAATGAATTATGCAAGTGGGA 58.800 37.500 0.00 0.00 0.00 4.37
8558 10604 5.834742 TGCTAATGAATTATGCAAGTGGGAT 59.165 36.000 0.00 0.00 0.00 3.85
8559 10605 6.154445 GCTAATGAATTATGCAAGTGGGATG 58.846 40.000 0.00 0.00 0.00 3.51
8560 10606 6.016024 GCTAATGAATTATGCAAGTGGGATGA 60.016 38.462 0.00 0.00 0.00 2.92
8561 10607 6.401047 AATGAATTATGCAAGTGGGATGAG 57.599 37.500 0.00 0.00 0.00 2.90
8562 10608 5.114764 TGAATTATGCAAGTGGGATGAGA 57.885 39.130 0.00 0.00 0.00 3.27
8563 10609 4.883585 TGAATTATGCAAGTGGGATGAGAC 59.116 41.667 0.00 0.00 0.00 3.36
8564 10610 2.602257 TATGCAAGTGGGATGAGACG 57.398 50.000 0.00 0.00 0.00 4.18
8565 10611 0.615331 ATGCAAGTGGGATGAGACGT 59.385 50.000 0.00 0.00 0.00 4.34
8566 10612 0.320683 TGCAAGTGGGATGAGACGTG 60.321 55.000 0.00 0.00 0.00 4.49
8567 10613 0.320771 GCAAGTGGGATGAGACGTGT 60.321 55.000 0.00 0.00 0.00 4.49
8568 10614 1.878102 GCAAGTGGGATGAGACGTGTT 60.878 52.381 0.00 0.00 0.00 3.32
8569 10615 2.069273 CAAGTGGGATGAGACGTGTTC 58.931 52.381 0.00 0.00 0.00 3.18
8570 10616 1.338107 AGTGGGATGAGACGTGTTCA 58.662 50.000 0.00 0.00 0.00 3.18
8571 10617 1.691976 AGTGGGATGAGACGTGTTCAA 59.308 47.619 0.00 0.00 0.00 2.69
8572 10618 2.069273 GTGGGATGAGACGTGTTCAAG 58.931 52.381 0.00 0.00 0.00 3.02
8573 10619 1.001974 TGGGATGAGACGTGTTCAAGG 59.998 52.381 0.00 0.00 0.00 3.61
8574 10620 1.275291 GGGATGAGACGTGTTCAAGGA 59.725 52.381 0.00 0.00 0.00 3.36
8575 10621 2.611518 GGATGAGACGTGTTCAAGGAG 58.388 52.381 0.00 0.00 0.00 3.69
8576 10622 2.611518 GATGAGACGTGTTCAAGGAGG 58.388 52.381 0.00 0.00 0.00 4.30
8577 10623 1.699730 TGAGACGTGTTCAAGGAGGA 58.300 50.000 0.00 0.00 0.00 3.71
8578 10624 1.613925 TGAGACGTGTTCAAGGAGGAG 59.386 52.381 0.00 0.00 0.00 3.69
8579 10625 0.969894 AGACGTGTTCAAGGAGGAGG 59.030 55.000 0.00 0.00 0.00 4.30
8580 10626 0.966920 GACGTGTTCAAGGAGGAGGA 59.033 55.000 0.00 0.00 0.00 3.71
8581 10627 1.550976 GACGTGTTCAAGGAGGAGGAT 59.449 52.381 0.00 0.00 0.00 3.24
8582 10628 1.276421 ACGTGTTCAAGGAGGAGGATG 59.724 52.381 0.00 0.00 0.00 3.51
8583 10629 1.406069 CGTGTTCAAGGAGGAGGATGG 60.406 57.143 0.00 0.00 0.00 3.51
8584 10630 1.065126 GTGTTCAAGGAGGAGGATGGG 60.065 57.143 0.00 0.00 0.00 4.00
8585 10631 0.548510 GTTCAAGGAGGAGGATGGGG 59.451 60.000 0.00 0.00 0.00 4.96
8586 10632 0.421495 TTCAAGGAGGAGGATGGGGA 59.579 55.000 0.00 0.00 0.00 4.81
8587 10633 0.421495 TCAAGGAGGAGGATGGGGAA 59.579 55.000 0.00 0.00 0.00 3.97
8588 10634 0.548510 CAAGGAGGAGGATGGGGAAC 59.451 60.000 0.00 0.00 0.00 3.62
8608 10654 7.125792 GGAACCAGATCCTCTAACATTAAGA 57.874 40.000 0.00 0.00 36.50 2.10
8609 10655 7.565680 GGAACCAGATCCTCTAACATTAAGAA 58.434 38.462 0.00 0.00 36.50 2.52
8610 10656 7.713073 GGAACCAGATCCTCTAACATTAAGAAG 59.287 40.741 0.00 0.00 36.50 2.85
8611 10657 7.130681 ACCAGATCCTCTAACATTAAGAAGG 57.869 40.000 0.00 0.00 0.00 3.46
8612 10658 6.903534 ACCAGATCCTCTAACATTAAGAAGGA 59.096 38.462 0.00 0.00 0.00 3.36
8613 10659 7.403231 ACCAGATCCTCTAACATTAAGAAGGAA 59.597 37.037 0.00 0.00 29.80 3.36
8614 10660 8.267894 CCAGATCCTCTAACATTAAGAAGGAAA 58.732 37.037 0.00 0.00 29.80 3.13
8615 10661 9.323985 CAGATCCTCTAACATTAAGAAGGAAAG 57.676 37.037 0.00 0.00 29.80 2.62
8616 10662 9.052365 AGATCCTCTAACATTAAGAAGGAAAGT 57.948 33.333 0.00 0.00 29.80 2.66
8617 10663 9.674068 GATCCTCTAACATTAAGAAGGAAAGTT 57.326 33.333 0.00 0.00 29.80 2.66
8625 10671 8.554835 ACATTAAGAAGGAAAGTTAGAGAAGC 57.445 34.615 0.00 0.00 0.00 3.86
8626 10672 8.379331 ACATTAAGAAGGAAAGTTAGAGAAGCT 58.621 33.333 0.00 0.00 0.00 3.74
8627 10673 9.877178 CATTAAGAAGGAAAGTTAGAGAAGCTA 57.123 33.333 0.00 0.00 0.00 3.32
8628 10674 9.878667 ATTAAGAAGGAAAGTTAGAGAAGCTAC 57.121 33.333 0.00 0.00 0.00 3.58
8629 10675 6.919775 AGAAGGAAAGTTAGAGAAGCTACA 57.080 37.500 0.00 0.00 0.00 2.74
8630 10676 7.304497 AGAAGGAAAGTTAGAGAAGCTACAA 57.696 36.000 0.00 0.00 0.00 2.41
8631 10677 7.912719 AGAAGGAAAGTTAGAGAAGCTACAAT 58.087 34.615 0.00 0.00 0.00 2.71
8632 10678 8.038351 AGAAGGAAAGTTAGAGAAGCTACAATC 58.962 37.037 0.00 0.00 0.00 2.67
8633 10679 6.645306 AGGAAAGTTAGAGAAGCTACAATCC 58.355 40.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.116238 GAGAGCATGGCTTACTTACAGAC 58.884 47.826 0.00 0.00 39.88 3.51
1 2 4.026744 AGAGAGCATGGCTTACTTACAGA 58.973 43.478 0.00 0.00 39.88 3.41
2 3 4.399004 AGAGAGCATGGCTTACTTACAG 57.601 45.455 0.00 0.00 39.88 2.74
13 14 2.360483 TCGCTTCTAGAAGAGAGCATGG 59.640 50.000 32.16 8.56 41.23 3.66
36 37 3.604875 TTAAGCTGCTACTACCACCAC 57.395 47.619 0.90 0.00 0.00 4.16
37 38 4.837093 AATTAAGCTGCTACTACCACCA 57.163 40.909 0.90 0.00 0.00 4.17
38 39 5.179555 GCATAATTAAGCTGCTACTACCACC 59.820 44.000 0.90 0.00 33.15 4.61
51 52 5.048224 AGCATCCACATCAGCATAATTAAGC 60.048 40.000 4.51 4.51 0.00 3.09
78 79 0.665835 CTAGAGCTGTCTGGCTACCG 59.334 60.000 0.00 0.00 43.20 4.02
227 231 2.341846 ACAGCCCGGTGGTATTATTG 57.658 50.000 0.00 0.00 0.00 1.90
235 239 0.243636 GATTGAAAACAGCCCGGTGG 59.756 55.000 0.00 0.00 0.00 4.61
240 244 4.279420 AGAAAGTGAGATTGAAAACAGCCC 59.721 41.667 0.00 0.00 0.00 5.19
265 269 4.078639 AGCAGCCTGGTCATATCTTTAC 57.921 45.455 0.00 0.00 0.00 2.01
316 320 4.013728 TGTGCGGCATAACTAGGATTTTT 58.986 39.130 5.72 0.00 0.00 1.94
317 321 3.616219 TGTGCGGCATAACTAGGATTTT 58.384 40.909 5.72 0.00 0.00 1.82
318 322 3.275617 TGTGCGGCATAACTAGGATTT 57.724 42.857 5.72 0.00 0.00 2.17
319 323 3.275617 TTGTGCGGCATAACTAGGATT 57.724 42.857 5.72 0.00 0.00 3.01
320 324 3.492102 ATTGTGCGGCATAACTAGGAT 57.508 42.857 14.48 0.00 0.00 3.24
405 409 6.069673 CCCCCAGTATATGAAATGGCATAGTA 60.070 42.308 0.00 0.00 34.50 1.82
406 410 5.281193 CCCCCAGTATATGAAATGGCATAGT 60.281 44.000 0.00 0.00 34.50 2.12
407 411 5.044919 TCCCCCAGTATATGAAATGGCATAG 60.045 44.000 0.00 0.00 34.50 2.23
408 412 4.855018 TCCCCCAGTATATGAAATGGCATA 59.145 41.667 0.00 0.00 35.41 3.14
409 413 3.662148 TCCCCCAGTATATGAAATGGCAT 59.338 43.478 0.00 0.00 0.00 4.40
459 465 5.599999 AGTGAGTCCTACATTGACATACC 57.400 43.478 0.00 0.00 35.15 2.73
474 480 8.177663 CACAACATGTTTGGATATTAGTGAGTC 58.822 37.037 8.77 0.00 0.00 3.36
476 482 6.968904 GCACAACATGTTTGGATATTAGTGAG 59.031 38.462 18.60 3.49 0.00 3.51
477 483 6.127758 GGCACAACATGTTTGGATATTAGTGA 60.128 38.462 18.60 0.00 0.00 3.41
478 484 6.035843 GGCACAACATGTTTGGATATTAGTG 58.964 40.000 8.77 11.39 0.00 2.74
518 711 0.178981 ACACCATGAGCCTGCAAGTT 60.179 50.000 0.00 0.00 0.00 2.66
519 712 0.892358 CACACCATGAGCCTGCAAGT 60.892 55.000 0.00 0.00 0.00 3.16
527 720 4.746729 TCAAAAATATGCACACCATGAGC 58.253 39.130 0.00 0.00 35.34 4.26
538 731 8.236586 TGTACAACATGAGTCTCAAAAATATGC 58.763 33.333 6.64 0.00 0.00 3.14
558 751 7.913674 TGCACATGTTCTAATGTATGTACAA 57.086 32.000 0.00 0.00 38.75 2.41
592 785 7.312657 ACATCATTGCACACACTTCTAATAG 57.687 36.000 0.00 0.00 0.00 1.73
614 807 6.046593 AGACGTCTTACAAACATTGAGAACA 58.953 36.000 13.58 0.00 0.00 3.18
661 854 9.046846 TGGTTCATAGGATAGGATTATTGTAGG 57.953 37.037 0.00 0.00 28.27 3.18
669 862 7.503902 GCTTCTTTTGGTTCATAGGATAGGATT 59.496 37.037 0.00 0.00 28.27 3.01
670 863 7.001073 GCTTCTTTTGGTTCATAGGATAGGAT 58.999 38.462 0.00 0.00 28.27 3.24
671 864 6.069673 TGCTTCTTTTGGTTCATAGGATAGGA 60.070 38.462 0.00 0.00 0.00 2.94
672 865 6.122277 TGCTTCTTTTGGTTCATAGGATAGG 58.878 40.000 0.00 0.00 0.00 2.57
674 867 9.866655 ATTATGCTTCTTTTGGTTCATAGGATA 57.133 29.630 0.00 0.00 0.00 2.59
675 868 8.773033 ATTATGCTTCTTTTGGTTCATAGGAT 57.227 30.769 0.00 0.00 0.00 3.24
676 869 9.693739 TTATTATGCTTCTTTTGGTTCATAGGA 57.306 29.630 0.00 0.00 0.00 2.94
714 907 9.810545 GGCTTTTATACATCTCATATACTCTCC 57.189 37.037 0.00 0.00 0.00 3.71
737 2164 2.899900 GGATTTTCCCTCTGTTTTGGCT 59.100 45.455 0.00 0.00 0.00 4.75
758 2254 0.474466 TGCTCCCTCCCATGGATAGG 60.474 60.000 15.22 18.79 0.00 2.57
759 2255 0.982704 CTGCTCCCTCCCATGGATAG 59.017 60.000 15.22 10.24 0.00 2.08
760 2256 1.130054 GCTGCTCCCTCCCATGGATA 61.130 60.000 15.22 0.00 0.00 2.59
778 2278 2.479566 TCCACCTCATTCACTCTTGC 57.520 50.000 0.00 0.00 0.00 4.01
779 2279 4.580167 TGTTTTCCACCTCATTCACTCTTG 59.420 41.667 0.00 0.00 0.00 3.02
789 2289 4.693095 GCTTTTGTTTTGTTTTCCACCTCA 59.307 37.500 0.00 0.00 0.00 3.86
793 2293 4.851014 GCTTGCTTTTGTTTTGTTTTCCAC 59.149 37.500 0.00 0.00 0.00 4.02
794 2294 4.759183 AGCTTGCTTTTGTTTTGTTTTCCA 59.241 33.333 0.00 0.00 0.00 3.53
806 2333 2.259511 GCCCCGAGCTTGCTTTTG 59.740 61.111 0.00 0.00 38.99 2.44
812 2339 4.479993 CTCCCTGCCCCGAGCTTG 62.480 72.222 0.00 0.00 44.23 4.01
889 2429 3.071206 GCTGGCTCAGGAGGACGA 61.071 66.667 0.00 0.00 31.21 4.20
1309 3064 4.219999 GGAGGAGAGCGCTGAGGC 62.220 72.222 18.48 0.00 0.00 4.70
1343 3098 1.878522 CCGAAGAAGCCGTGATCCG 60.879 63.158 0.00 0.00 0.00 4.18
1373 3128 3.655211 CCTGCTCCTGGGCCAAGT 61.655 66.667 8.04 0.00 0.00 3.16
1380 3135 3.618780 GACACAGCCCTGCTCCTGG 62.619 68.421 0.00 0.00 36.40 4.45
1446 3201 4.624364 TCCACAGCAGCACCGGTG 62.624 66.667 30.66 30.66 40.25 4.94
1465 3220 2.440817 GGTACCTGGGATCCGTGGG 61.441 68.421 21.14 17.05 0.00 4.61
1590 3345 3.565482 TCAGCAAGTAAGAAGCACCAAAG 59.435 43.478 0.00 0.00 0.00 2.77
1610 3365 3.126879 CGGCCTGCGCTGAATTCA 61.127 61.111 16.65 8.12 44.91 2.57
1666 3421 4.380945 TCCCCAGCCCAATGCACC 62.381 66.667 0.00 0.00 44.83 5.01
1725 3480 3.000819 CACCCTGGGTACTCGGCA 61.001 66.667 20.09 0.00 32.11 5.69
1728 3483 4.770540 TACCACCCTGGGTACTCG 57.229 61.111 20.09 5.96 43.37 4.18
1798 3553 4.471908 TGCGCCGACCTGCATGAT 62.472 61.111 4.18 0.00 35.90 2.45
1868 3623 7.890515 TGCTTGGTTGACATTGTAATTTATCA 58.109 30.769 0.00 0.00 0.00 2.15
1913 3668 1.173913 GTTATGTTGGGCCACCTGAC 58.826 55.000 5.23 1.44 37.76 3.51
1997 3755 4.019321 AGAAACTACCTGCCAAGCTATTCA 60.019 41.667 0.00 0.00 0.00 2.57
2040 3798 0.590195 GACTGATGGATTCGGCATGC 59.410 55.000 9.90 9.90 33.65 4.06
2058 3816 2.278245 ACCTGATGATTTGTGGAGGGA 58.722 47.619 0.00 0.00 0.00 4.20
2118 3876 5.924254 CGTGTTGTAGTCATTCTGAAGGTTA 59.076 40.000 1.70 0.00 0.00 2.85
2138 3896 2.151202 CTTGTTGGCTACCAATCGTGT 58.849 47.619 1.79 0.00 45.80 4.49
2226 3984 3.463944 CTTATAACTGCCCTGGTTACCG 58.536 50.000 0.00 0.00 32.92 4.02
2244 4002 2.026636 AGCGGTAGGTTCAAATGCCTTA 60.027 45.455 0.00 0.00 36.38 2.69
2366 4298 1.962100 CCGTAGAAGTACCAGATCCCC 59.038 57.143 0.00 0.00 0.00 4.81
2389 4321 4.161565 AGGCTCAAATGTCTTCGTATGGTA 59.838 41.667 0.00 0.00 0.00 3.25
2688 4620 5.446143 TTGTACCACTAAATTGTTGCTGG 57.554 39.130 0.00 0.00 0.00 4.85
2745 4677 3.063180 GTCCAGCTGATGACATTTCTTCG 59.937 47.826 17.39 0.00 0.00 3.79
2751 4683 2.772739 GCGTCCAGCTGATGACATT 58.227 52.632 17.39 0.00 44.04 2.71
3010 4942 2.351418 CGAAGCATCAACTTTATCGGCA 59.649 45.455 0.00 0.00 0.00 5.69
3013 4945 4.112634 TCCTCGAAGCATCAACTTTATCG 58.887 43.478 0.00 0.00 0.00 2.92
3022 4954 2.102578 TCAGTGATCCTCGAAGCATCA 58.897 47.619 0.00 0.00 0.00 3.07
3415 5354 2.291217 GCATTATGGGGATCCTCCTTCC 60.291 54.545 9.81 2.76 36.57 3.46
3497 5436 9.699410 ATTCAGAAATGTTAATCCTACCAATCA 57.301 29.630 0.00 0.00 0.00 2.57
3591 5536 8.576442 AGTGGAAAATGTAAAATCACAACCTAG 58.424 33.333 0.00 0.00 30.84 3.02
3624 5569 2.619646 GCAGTAGCCAGTAGGTAGAGTC 59.380 54.545 0.00 0.00 37.19 3.36
3823 5798 6.981722 ACAATAAAGTTTTGCTAGGTTCCAG 58.018 36.000 0.00 0.00 0.00 3.86
3930 5908 1.142748 CTGCCATCTCTGGACCGTC 59.857 63.158 0.00 0.00 46.37 4.79
4042 6020 3.403038 ACAACAAGTACCTGCATCTGAC 58.597 45.455 0.00 0.00 0.00 3.51
4059 6037 2.710377 TGGCATGACACAGGATACAAC 58.290 47.619 0.00 0.00 41.41 3.32
4062 6040 7.308589 GGTTAAATATGGCATGACACAGGATAC 60.309 40.741 1.45 0.00 0.00 2.24
4183 6161 3.327757 AGTTGACCTTCCTGAGCATACAA 59.672 43.478 0.00 0.00 0.00 2.41
4186 6164 2.906389 ACAGTTGACCTTCCTGAGCATA 59.094 45.455 0.00 0.00 0.00 3.14
4263 6241 9.156156 GTTAGAAACGAAAGAAAGAAGCTAAAC 57.844 33.333 0.00 0.00 0.00 2.01
4266 6244 7.709613 ACTGTTAGAAACGAAAGAAAGAAGCTA 59.290 33.333 0.00 0.00 0.00 3.32
4268 6246 6.716438 ACTGTTAGAAACGAAAGAAAGAAGC 58.284 36.000 0.00 0.00 0.00 3.86
4285 6263 6.672147 ACAGCTAAATCAAGCAAACTGTTAG 58.328 36.000 0.00 0.00 45.30 2.34
4376 6355 5.559770 TGAGCCATTTTCTTCACAGTATCA 58.440 37.500 0.00 0.00 0.00 2.15
4457 6436 6.094048 TCTCTACATTAAAAACATCTGCAGGC 59.906 38.462 15.13 0.00 0.00 4.85
4546 6525 5.931724 TCTCGCAAGTGAAGAAATCATAACA 59.068 36.000 0.00 0.00 40.97 2.41
4602 6581 7.603180 ACATGAGAAAGACAGTGCCTATATA 57.397 36.000 0.00 0.00 0.00 0.86
4650 6630 9.565090 TTATGATGAGAAAATATCTGAACAGGG 57.435 33.333 1.93 0.00 38.96 4.45
4751 6740 9.593134 CTACTTAGTCTCTTTCACAGCATTAAT 57.407 33.333 0.00 0.00 0.00 1.40
4822 6811 4.773323 GCACCAGCTCTAAGAAAACAAT 57.227 40.909 0.00 0.00 37.91 2.71
4870 6859 9.155975 AGTAATCAATAATATCACGCTTCCATC 57.844 33.333 0.00 0.00 0.00 3.51
4916 6905 6.303903 AGGGCAATCATTTTTCTAAGCAAT 57.696 33.333 0.00 0.00 0.00 3.56
4951 6940 7.060600 TCAGAAGTTTTAACTGATACATGCG 57.939 36.000 0.00 0.00 39.66 4.73
4966 6955 8.686334 TCAAGTTAAGCAGAAATTCAGAAGTTT 58.314 29.630 0.00 0.00 0.00 2.66
4992 6991 5.455056 ACACGAAGTTATGAAGTCAGTCT 57.545 39.130 0.00 0.00 41.61 3.24
5018 7017 1.410004 TAGGATTAGGCTGTCCCACG 58.590 55.000 14.82 0.00 35.00 4.94
5172 7171 7.451731 AAAGGAAGGAACACATATATCTCCA 57.548 36.000 0.00 0.00 0.00 3.86
5221 7220 2.161012 CAGCTGCAACCTGTATCAAGTG 59.839 50.000 0.00 0.00 0.00 3.16
5316 7315 2.489329 AGGACATTTCAAATGGTCTGCG 59.511 45.455 14.70 0.00 0.00 5.18
5503 7503 1.069432 GGCTACGCAAGATCATGCATG 60.069 52.381 21.07 21.07 46.76 4.06
5552 7555 9.851686 TGCATTTCAAATATATTAGTCCAGAGT 57.148 29.630 0.00 0.00 0.00 3.24
5627 7630 3.515901 GGAAGGGTAGCAGGATATACTGG 59.484 52.174 16.91 0.00 38.90 4.00
5954 7959 4.322080 TGGAATCTAGGAACAGCATACG 57.678 45.455 0.00 0.00 0.00 3.06
5966 7971 6.688637 TGCAGAACATGATTTGGAATCTAG 57.311 37.500 0.00 0.00 0.00 2.43
5967 7972 7.123098 ACATTGCAGAACATGATTTGGAATCTA 59.877 33.333 9.62 0.00 30.62 1.98
5968 7973 5.988310 TTGCAGAACATGATTTGGAATCT 57.012 34.783 0.00 0.00 0.00 2.40
5980 7987 3.276857 CCTCAGCTACATTGCAGAACAT 58.723 45.455 0.00 0.00 34.99 2.71
5990 7997 1.059913 GGGGCATACCTCAGCTACAT 58.940 55.000 0.00 0.00 35.91 2.29
5991 7998 0.031111 AGGGGCATACCTCAGCTACA 60.031 55.000 0.00 0.00 39.93 2.74
6003 8010 1.843851 TGATTAACGAAGGAGGGGCAT 59.156 47.619 0.00 0.00 0.00 4.40
6007 8014 4.439968 GGTTAGTGATTAACGAAGGAGGG 58.560 47.826 0.00 0.00 42.14 4.30
6260 8267 1.033746 AATGCACTGAAGGGGATGCG 61.034 55.000 0.00 0.00 41.07 4.73
6475 8482 8.507249 GTGCACCCTGATAGATTTATTCAATAC 58.493 37.037 5.22 0.00 0.00 1.89
6492 8499 0.104120 TTATCCGATCGTGCACCCTG 59.896 55.000 15.09 0.00 0.00 4.45
6656 8663 6.377996 ACAACAGGATTTTAGCATCAGCATTA 59.622 34.615 0.00 0.00 45.49 1.90
6669 8676 2.296190 GCCTTCGGAACAACAGGATTTT 59.704 45.455 0.00 0.00 0.00 1.82
6852 8859 5.934625 CCATTAGGAGTATGCATTCCACTAC 59.065 44.000 17.74 10.62 36.89 2.73
6881 8888 4.703897 TGTTTTGGAGATCTTCGTTCTGT 58.296 39.130 0.00 0.00 0.00 3.41
6905 8912 2.687614 GCATCCCCAAACCATGATCTGA 60.688 50.000 0.00 0.00 0.00 3.27
6972 8979 2.465010 ATACCTGGACCGGACACCCA 62.465 60.000 9.46 8.97 0.00 4.51
6997 9004 6.486320 TGAACTGAAAGCAAATGTCATCACTA 59.514 34.615 0.00 0.00 37.60 2.74
6999 9006 5.522456 TGAACTGAAAGCAAATGTCATCAC 58.478 37.500 0.00 0.00 37.60 3.06
7003 9010 7.267128 AGAAAATGAACTGAAAGCAAATGTCA 58.733 30.769 0.00 0.00 37.60 3.58
7166 9173 3.610911 GCACAAAGAACCTAGCACCTAT 58.389 45.455 0.00 0.00 0.00 2.57
7167 9174 2.290071 GGCACAAAGAACCTAGCACCTA 60.290 50.000 0.00 0.00 0.00 3.08
7168 9175 1.545651 GGCACAAAGAACCTAGCACCT 60.546 52.381 0.00 0.00 0.00 4.00
7246 9253 1.422024 TCATCCCGTTGGAAGGTTTCA 59.578 47.619 0.00 0.00 45.98 2.69
7558 9565 0.107897 TGCTGTTGGAACGACTGTGT 60.108 50.000 0.00 0.00 0.00 3.72
7630 9637 1.975327 CCGTCACCTCACCTGTCAT 59.025 57.895 0.00 0.00 0.00 3.06
7789 9796 0.119155 TTGGAGGGGATGTCTGTCCT 59.881 55.000 0.00 0.00 38.38 3.85
8010 10019 2.915869 GGGGCAGAGGCGGATTAA 59.084 61.111 0.00 0.00 42.47 1.40
8023 10032 1.064060 CTTCGAACAATGAATCGGGGC 59.936 52.381 11.65 0.00 39.45 5.80
8027 10038 2.159430 TGTGCCTTCGAACAATGAATCG 59.841 45.455 0.00 6.82 40.31 3.34
8046 10057 0.185175 GAGGGGGTGAACTGGTTTGT 59.815 55.000 0.00 0.00 0.00 2.83
8246 10279 5.435291 AGGCAAAAGAATCGAATCATCTCT 58.565 37.500 2.82 0.00 0.00 3.10
8318 10360 8.519492 ACAAAAACAACATGCTGAATACATAC 57.481 30.769 2.44 0.00 0.00 2.39
8320 10362 7.710044 TCAACAAAAACAACATGCTGAATACAT 59.290 29.630 2.44 0.00 0.00 2.29
8324 10366 6.987992 AGATCAACAAAAACAACATGCTGAAT 59.012 30.769 2.44 0.00 0.00 2.57
8325 10367 6.339730 AGATCAACAAAAACAACATGCTGAA 58.660 32.000 2.44 0.00 0.00 3.02
8332 10374 5.641209 CCAACCAAGATCAACAAAAACAACA 59.359 36.000 0.00 0.00 0.00 3.33
8369 10415 6.978343 ACAAAGAGCGCATACACTAAATTA 57.022 33.333 11.47 0.00 0.00 1.40
8375 10421 1.197721 GCAACAAAGAGCGCATACACT 59.802 47.619 11.47 0.00 0.00 3.55
8385 10431 2.023673 TGGGTCACAAGCAACAAAGAG 58.976 47.619 0.00 0.00 0.00 2.85
8399 10445 6.098982 ACACCATAGTTTTCAAATTTGGGTCA 59.901 34.615 17.90 0.00 0.00 4.02
8400 10446 6.423604 CACACCATAGTTTTCAAATTTGGGTC 59.576 38.462 17.90 6.85 0.00 4.46
8401 10447 6.287525 CACACCATAGTTTTCAAATTTGGGT 58.712 36.000 17.90 11.27 0.00 4.51
8403 10449 5.700373 CCCACACCATAGTTTTCAAATTTGG 59.300 40.000 17.90 1.95 0.00 3.28
8404 10450 5.700373 CCCCACACCATAGTTTTCAAATTTG 59.300 40.000 12.15 12.15 0.00 2.32
8406 10452 4.904853 ACCCCACACCATAGTTTTCAAATT 59.095 37.500 0.00 0.00 0.00 1.82
8407 10453 4.488770 ACCCCACACCATAGTTTTCAAAT 58.511 39.130 0.00 0.00 0.00 2.32
8408 10454 3.917300 ACCCCACACCATAGTTTTCAAA 58.083 40.909 0.00 0.00 0.00 2.69
8410 10456 3.603965 AACCCCACACCATAGTTTTCA 57.396 42.857 0.00 0.00 0.00 2.69
8411 10457 3.639561 ACAAACCCCACACCATAGTTTTC 59.360 43.478 0.00 0.00 0.00 2.29
8412 10458 3.386402 CACAAACCCCACACCATAGTTTT 59.614 43.478 0.00 0.00 0.00 2.43
8438 10484 4.814771 GTCTTCCGTTGGTATAATTCAGGG 59.185 45.833 0.00 0.00 0.00 4.45
8441 10487 5.687166 AGGTCTTCCGTTGGTATAATTCA 57.313 39.130 0.00 0.00 39.05 2.57
8452 10498 4.514401 GGTGAATCATAAGGTCTTCCGTT 58.486 43.478 0.00 0.00 39.05 4.44
8454 10500 3.123804 CGGTGAATCATAAGGTCTTCCG 58.876 50.000 0.00 0.00 39.05 4.30
8455 10501 4.120589 GTCGGTGAATCATAAGGTCTTCC 58.879 47.826 0.00 0.00 0.00 3.46
8458 10504 6.098409 ACATAAGTCGGTGAATCATAAGGTCT 59.902 38.462 0.00 0.00 0.00 3.85
8459 10505 6.201044 CACATAAGTCGGTGAATCATAAGGTC 59.799 42.308 0.00 0.00 37.18 3.85
8460 10506 6.049149 CACATAAGTCGGTGAATCATAAGGT 58.951 40.000 0.00 0.00 37.18 3.50
8461 10507 6.049149 ACACATAAGTCGGTGAATCATAAGG 58.951 40.000 0.00 0.00 38.38 2.69
8462 10508 7.166628 GACACATAAGTCGGTGAATCATAAG 57.833 40.000 0.00 0.00 38.38 1.73
8475 10521 1.136500 GGAGTCCCCGACACATAAGTC 59.864 57.143 0.00 0.00 34.60 3.01
8476 10522 1.192428 GGAGTCCCCGACACATAAGT 58.808 55.000 0.00 0.00 34.60 2.24
8477 10523 1.486211 AGGAGTCCCCGACACATAAG 58.514 55.000 5.25 0.00 40.87 1.73
8478 10524 1.946984 AAGGAGTCCCCGACACATAA 58.053 50.000 5.25 0.00 40.87 1.90
8479 10525 2.832643 TAAGGAGTCCCCGACACATA 57.167 50.000 5.25 0.00 40.87 2.29
8480 10526 1.762957 CATAAGGAGTCCCCGACACAT 59.237 52.381 5.25 0.00 40.87 3.21
8481 10527 1.191535 CATAAGGAGTCCCCGACACA 58.808 55.000 5.25 0.00 40.87 3.72
8482 10528 1.481871 TCATAAGGAGTCCCCGACAC 58.518 55.000 5.25 0.00 40.87 3.67
8483 10529 2.471815 ATCATAAGGAGTCCCCGACA 57.528 50.000 5.25 0.00 40.87 4.35
8484 10530 2.698797 TGAATCATAAGGAGTCCCCGAC 59.301 50.000 5.25 0.00 39.84 4.79
8485 10531 2.698797 GTGAATCATAAGGAGTCCCCGA 59.301 50.000 5.25 0.00 39.84 5.14
8486 10532 2.224305 GGTGAATCATAAGGAGTCCCCG 60.224 54.545 5.25 0.00 39.84 5.73
8487 10533 2.224305 CGGTGAATCATAAGGAGTCCCC 60.224 54.545 5.25 0.00 39.84 4.81
8488 10534 2.698797 TCGGTGAATCATAAGGAGTCCC 59.301 50.000 5.25 0.00 39.84 4.46
8489 10535 3.385111 AGTCGGTGAATCATAAGGAGTCC 59.615 47.826 0.00 0.00 39.84 3.85
8490 10536 4.657436 AGTCGGTGAATCATAAGGAGTC 57.343 45.455 0.00 0.00 40.94 3.36
8493 10539 6.479972 ACATAAGTCGGTGAATCATAAGGA 57.520 37.500 0.00 0.00 0.00 3.36
8498 10544 5.006153 TCGAACATAAGTCGGTGAATCAT 57.994 39.130 0.00 0.00 0.00 2.45
8520 10566 0.530744 TTAGCAACGAGTCCGAGCAT 59.469 50.000 0.00 0.00 40.62 3.79
8521 10567 0.530744 ATTAGCAACGAGTCCGAGCA 59.469 50.000 0.00 0.00 40.62 4.26
8522 10568 0.924090 CATTAGCAACGAGTCCGAGC 59.076 55.000 0.00 0.00 39.50 5.03
8523 10569 2.561733 TCATTAGCAACGAGTCCGAG 57.438 50.000 0.00 0.00 39.50 4.63
8524 10570 3.520290 ATTCATTAGCAACGAGTCCGA 57.480 42.857 0.00 0.00 39.50 4.55
8525 10571 5.670097 CATAATTCATTAGCAACGAGTCCG 58.330 41.667 0.00 0.00 42.50 4.79
8526 10572 5.007626 TGCATAATTCATTAGCAACGAGTCC 59.992 40.000 0.00 0.00 31.42 3.85
8527 10573 6.048073 TGCATAATTCATTAGCAACGAGTC 57.952 37.500 0.00 0.00 31.42 3.36
8528 10574 6.094048 ACTTGCATAATTCATTAGCAACGAGT 59.906 34.615 0.00 0.00 39.95 4.18
8529 10575 6.412943 CACTTGCATAATTCATTAGCAACGAG 59.587 38.462 0.00 0.00 39.95 4.18
8530 10576 6.257423 CACTTGCATAATTCATTAGCAACGA 58.743 36.000 0.00 0.00 39.95 3.85
8531 10577 5.456497 CCACTTGCATAATTCATTAGCAACG 59.544 40.000 0.00 0.00 39.95 4.10
8532 10578 5.750067 CCCACTTGCATAATTCATTAGCAAC 59.250 40.000 0.00 0.00 39.95 4.17
8533 10579 5.655974 TCCCACTTGCATAATTCATTAGCAA 59.344 36.000 0.00 0.00 42.27 3.91
8534 10580 5.199723 TCCCACTTGCATAATTCATTAGCA 58.800 37.500 0.00 0.00 0.00 3.49
8535 10581 5.772825 TCCCACTTGCATAATTCATTAGC 57.227 39.130 0.00 0.00 0.00 3.09
8536 10582 7.446319 TCTCATCCCACTTGCATAATTCATTAG 59.554 37.037 0.00 0.00 0.00 1.73
8537 10583 7.229306 GTCTCATCCCACTTGCATAATTCATTA 59.771 37.037 0.00 0.00 0.00 1.90
8538 10584 6.040166 GTCTCATCCCACTTGCATAATTCATT 59.960 38.462 0.00 0.00 0.00 2.57
8539 10585 5.533903 GTCTCATCCCACTTGCATAATTCAT 59.466 40.000 0.00 0.00 0.00 2.57
8540 10586 4.883585 GTCTCATCCCACTTGCATAATTCA 59.116 41.667 0.00 0.00 0.00 2.57
8541 10587 4.024556 CGTCTCATCCCACTTGCATAATTC 60.025 45.833 0.00 0.00 0.00 2.17
8542 10588 3.879295 CGTCTCATCCCACTTGCATAATT 59.121 43.478 0.00 0.00 0.00 1.40
8543 10589 3.118261 ACGTCTCATCCCACTTGCATAAT 60.118 43.478 0.00 0.00 0.00 1.28
8544 10590 2.236146 ACGTCTCATCCCACTTGCATAA 59.764 45.455 0.00 0.00 0.00 1.90
8545 10591 1.831106 ACGTCTCATCCCACTTGCATA 59.169 47.619 0.00 0.00 0.00 3.14
8546 10592 0.615331 ACGTCTCATCCCACTTGCAT 59.385 50.000 0.00 0.00 0.00 3.96
8547 10593 0.320683 CACGTCTCATCCCACTTGCA 60.321 55.000 0.00 0.00 0.00 4.08
8548 10594 0.320771 ACACGTCTCATCCCACTTGC 60.321 55.000 0.00 0.00 0.00 4.01
8549 10595 2.069273 GAACACGTCTCATCCCACTTG 58.931 52.381 0.00 0.00 0.00 3.16
8550 10596 1.691976 TGAACACGTCTCATCCCACTT 59.308 47.619 0.00 0.00 0.00 3.16
8551 10597 1.338107 TGAACACGTCTCATCCCACT 58.662 50.000 0.00 0.00 0.00 4.00
8552 10598 2.069273 CTTGAACACGTCTCATCCCAC 58.931 52.381 0.00 0.00 0.00 4.61
8553 10599 1.001974 CCTTGAACACGTCTCATCCCA 59.998 52.381 0.00 0.00 0.00 4.37
8554 10600 1.275291 TCCTTGAACACGTCTCATCCC 59.725 52.381 0.00 0.00 0.00 3.85
8555 10601 2.611518 CTCCTTGAACACGTCTCATCC 58.388 52.381 0.00 0.00 0.00 3.51
8556 10602 2.231478 TCCTCCTTGAACACGTCTCATC 59.769 50.000 0.00 0.00 0.00 2.92
8557 10603 2.232452 CTCCTCCTTGAACACGTCTCAT 59.768 50.000 0.00 0.00 0.00 2.90
8558 10604 1.613925 CTCCTCCTTGAACACGTCTCA 59.386 52.381 0.00 0.00 0.00 3.27
8559 10605 1.067495 CCTCCTCCTTGAACACGTCTC 60.067 57.143 0.00 0.00 0.00 3.36
8560 10606 0.969894 CCTCCTCCTTGAACACGTCT 59.030 55.000 0.00 0.00 0.00 4.18
8561 10607 0.966920 TCCTCCTCCTTGAACACGTC 59.033 55.000 0.00 0.00 0.00 4.34
8562 10608 1.276421 CATCCTCCTCCTTGAACACGT 59.724 52.381 0.00 0.00 0.00 4.49
8563 10609 1.406069 CCATCCTCCTCCTTGAACACG 60.406 57.143 0.00 0.00 0.00 4.49
8564 10610 1.065126 CCCATCCTCCTCCTTGAACAC 60.065 57.143 0.00 0.00 0.00 3.32
8565 10611 1.289160 CCCATCCTCCTCCTTGAACA 58.711 55.000 0.00 0.00 0.00 3.18
8566 10612 0.548510 CCCCATCCTCCTCCTTGAAC 59.451 60.000 0.00 0.00 0.00 3.18
8567 10613 0.421495 TCCCCATCCTCCTCCTTGAA 59.579 55.000 0.00 0.00 0.00 2.69
8568 10614 0.421495 TTCCCCATCCTCCTCCTTGA 59.579 55.000 0.00 0.00 0.00 3.02
8569 10615 0.548510 GTTCCCCATCCTCCTCCTTG 59.451 60.000 0.00 0.00 0.00 3.61
8570 10616 0.624795 GGTTCCCCATCCTCCTCCTT 60.625 60.000 0.00 0.00 0.00 3.36
8571 10617 1.004891 GGTTCCCCATCCTCCTCCT 59.995 63.158 0.00 0.00 0.00 3.69
8572 10618 1.307866 TGGTTCCCCATCCTCCTCC 60.308 63.158 0.00 0.00 35.17 4.30
8573 10619 0.326618 TCTGGTTCCCCATCCTCCTC 60.327 60.000 0.00 0.00 40.90 3.71
8574 10620 0.348370 ATCTGGTTCCCCATCCTCCT 59.652 55.000 0.00 0.00 40.90 3.69
8575 10621 0.767998 GATCTGGTTCCCCATCCTCC 59.232 60.000 0.00 0.00 40.90 4.30
8576 10622 0.767998 GGATCTGGTTCCCCATCCTC 59.232 60.000 8.20 0.00 40.90 3.71
8577 10623 0.348370 AGGATCTGGTTCCCCATCCT 59.652 55.000 10.95 10.95 40.90 3.24
8578 10624 0.767998 GAGGATCTGGTTCCCCATCC 59.232 60.000 7.64 7.64 40.90 3.51
8591 10637 9.674068 AACTTTCCTTCTTAATGTTAGAGGATC 57.326 33.333 0.00 0.00 0.00 3.36
8599 10645 9.004717 GCTTCTCTAACTTTCCTTCTTAATGTT 57.995 33.333 0.00 0.00 0.00 2.71
8600 10646 8.379331 AGCTTCTCTAACTTTCCTTCTTAATGT 58.621 33.333 0.00 0.00 0.00 2.71
8601 10647 8.785329 AGCTTCTCTAACTTTCCTTCTTAATG 57.215 34.615 0.00 0.00 0.00 1.90
8602 10648 9.878667 GTAGCTTCTCTAACTTTCCTTCTTAAT 57.121 33.333 0.00 0.00 0.00 1.40
8603 10649 8.867097 TGTAGCTTCTCTAACTTTCCTTCTTAA 58.133 33.333 0.00 0.00 0.00 1.85
8604 10650 8.418597 TGTAGCTTCTCTAACTTTCCTTCTTA 57.581 34.615 0.00 0.00 0.00 2.10
8605 10651 7.304497 TGTAGCTTCTCTAACTTTCCTTCTT 57.696 36.000 0.00 0.00 0.00 2.52
8606 10652 6.919775 TGTAGCTTCTCTAACTTTCCTTCT 57.080 37.500 0.00 0.00 0.00 2.85
8607 10653 7.279090 GGATTGTAGCTTCTCTAACTTTCCTTC 59.721 40.741 0.00 0.00 0.00 3.46
8608 10654 7.106890 GGATTGTAGCTTCTCTAACTTTCCTT 58.893 38.462 0.00 0.00 0.00 3.36
8609 10655 6.645306 GGATTGTAGCTTCTCTAACTTTCCT 58.355 40.000 0.00 0.00 0.00 3.36
8610 10656 6.912203 GGATTGTAGCTTCTCTAACTTTCC 57.088 41.667 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.