Multiple sequence alignment - TraesCS6A01G017700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G017700 chr6A 100.000 2507 0 0 1 2507 8711903 8714409 0.000000e+00 4630.0
1 TraesCS6A01G017700 chr6A 87.598 2032 163 30 48 2029 8624821 8622829 0.000000e+00 2274.0
2 TraesCS6A01G017700 chr6A 79.260 1244 215 36 313 1532 35581638 35580414 0.000000e+00 828.0
3 TraesCS6A01G017700 chr6A 79.823 679 126 10 860 1532 9572511 9573184 3.750000e-133 484.0
4 TraesCS6A01G017700 chr6A 88.750 80 9 0 1892 1971 30558758 30558679 5.710000e-17 99.0
5 TraesCS6A01G017700 chr6A 97.674 43 0 1 2268 2310 8614460 8614419 3.460000e-09 73.1
6 TraesCS6A01G017700 chr6D 90.285 1791 134 19 263 2029 8147284 8145510 0.000000e+00 2307.0
7 TraesCS6A01G017700 chr6D 87.956 1727 152 33 339 2030 8249774 8251479 0.000000e+00 1986.0
8 TraesCS6A01G017700 chr6D 80.597 1474 224 41 90 1532 8245222 8246664 0.000000e+00 1081.0
9 TraesCS6A01G017700 chr6D 79.607 1221 213 28 330 1532 8967563 8968765 0.000000e+00 843.0
10 TraesCS6A01G017700 chr6D 78.820 1237 215 37 321 1532 7885716 7886930 0.000000e+00 789.0
11 TraesCS6A01G017700 chr6D 78.679 1196 214 32 339 1514 8552807 8551633 0.000000e+00 758.0
12 TraesCS6A01G017700 chr6D 90.704 398 19 2 2041 2438 8258319 8258698 4.780000e-142 514.0
13 TraesCS6A01G017700 chr6D 79.937 633 119 8 883 1511 14518180 14518808 2.270000e-125 459.0
14 TraesCS6A01G017700 chr6B 87.517 1514 126 24 194 1681 15115836 15114360 0.000000e+00 1690.0
15 TraesCS6A01G017700 chr6B 89.593 1230 115 9 313 1532 21458671 21459897 0.000000e+00 1550.0
16 TraesCS6A01G017700 chr6B 77.787 1202 230 32 329 1509 15744098 15742913 0.000000e+00 706.0
17 TraesCS6A01G017700 chr6B 77.750 1200 220 37 339 1514 52981060 52979884 0.000000e+00 693.0
18 TraesCS6A01G017700 chr6B 92.949 312 19 3 1719 2029 15114362 15114053 3.800000e-123 451.0
19 TraesCS6A01G017700 chr6B 84.677 124 13 3 1904 2025 15297699 15297580 4.380000e-23 119.0
20 TraesCS6A01G017700 chr7D 79.043 1212 215 31 331 1525 161390632 161391821 0.000000e+00 795.0
21 TraesCS6A01G017700 chr4D 84.024 169 18 5 2102 2263 3235175 3235341 1.200000e-33 154.0
22 TraesCS6A01G017700 chr4B 79.803 203 24 9 2102 2297 2686693 2686501 5.630000e-27 132.0
23 TraesCS6A01G017700 chr4A 84.211 133 18 2 2117 2246 602337332 602337200 2.620000e-25 126.0
24 TraesCS6A01G017700 chr4A 92.958 71 5 0 2436 2506 318044418 318044488 1.230000e-18 104.0
25 TraesCS6A01G017700 chr1A 95.588 68 3 0 2440 2507 57407736 57407803 2.640000e-20 110.0
26 TraesCS6A01G017700 chr1A 91.045 67 6 0 2440 2506 475411191 475411125 9.550000e-15 91.6
27 TraesCS6A01G017700 chr1A 94.737 57 3 0 2450 2506 475313288 475313232 3.430000e-14 89.8
28 TraesCS6A01G017700 chr7A 91.304 69 4 1 2440 2506 681522554 681522622 2.660000e-15 93.5
29 TraesCS6A01G017700 chr2A 89.706 68 7 0 2440 2507 371013052 371012985 1.240000e-13 87.9
30 TraesCS6A01G017700 chr5A 88.406 69 7 1 2440 2507 700597523 700597591 5.750000e-12 82.4
31 TraesCS6A01G017700 chr3B 85.714 70 6 4 2440 2507 766825698 766825631 1.240000e-08 71.3
32 TraesCS6A01G017700 chr3A 84.211 76 7 5 2435 2507 233696349 233696276 4.470000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G017700 chr6A 8711903 8714409 2506 False 4630.0 4630 100.0000 1 2507 1 chr6A.!!$F1 2506
1 TraesCS6A01G017700 chr6A 8622829 8624821 1992 True 2274.0 2274 87.5980 48 2029 1 chr6A.!!$R2 1981
2 TraesCS6A01G017700 chr6A 35580414 35581638 1224 True 828.0 828 79.2600 313 1532 1 chr6A.!!$R4 1219
3 TraesCS6A01G017700 chr6A 9572511 9573184 673 False 484.0 484 79.8230 860 1532 1 chr6A.!!$F2 672
4 TraesCS6A01G017700 chr6D 8145510 8147284 1774 True 2307.0 2307 90.2850 263 2029 1 chr6D.!!$R1 1766
5 TraesCS6A01G017700 chr6D 8245222 8251479 6257 False 1533.5 1986 84.2765 90 2030 2 chr6D.!!$F5 1940
6 TraesCS6A01G017700 chr6D 8967563 8968765 1202 False 843.0 843 79.6070 330 1532 1 chr6D.!!$F3 1202
7 TraesCS6A01G017700 chr6D 7885716 7886930 1214 False 789.0 789 78.8200 321 1532 1 chr6D.!!$F1 1211
8 TraesCS6A01G017700 chr6D 8551633 8552807 1174 True 758.0 758 78.6790 339 1514 1 chr6D.!!$R2 1175
9 TraesCS6A01G017700 chr6D 14518180 14518808 628 False 459.0 459 79.9370 883 1511 1 chr6D.!!$F4 628
10 TraesCS6A01G017700 chr6B 21458671 21459897 1226 False 1550.0 1550 89.5930 313 1532 1 chr6B.!!$F1 1219
11 TraesCS6A01G017700 chr6B 15114053 15115836 1783 True 1070.5 1690 90.2330 194 2029 2 chr6B.!!$R4 1835
12 TraesCS6A01G017700 chr6B 15742913 15744098 1185 True 706.0 706 77.7870 329 1509 1 chr6B.!!$R2 1180
13 TraesCS6A01G017700 chr6B 52979884 52981060 1176 True 693.0 693 77.7500 339 1514 1 chr6B.!!$R3 1175
14 TraesCS6A01G017700 chr7D 161390632 161391821 1189 False 795.0 795 79.0430 331 1525 1 chr7D.!!$F1 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.305922 GCGGATCCAAATGAAGAGCG 59.694 55.0 13.41 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 6273 1.066573 CAACTGGCCAACAACAAACCA 60.067 47.619 7.01 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.332997 CAGCGGATCCAAATGAAGAGC 59.667 52.381 13.41 3.34 0.00 4.09
21 22 0.305922 GCGGATCCAAATGAAGAGCG 59.694 55.000 13.41 0.00 0.00 5.03
22 23 1.656652 CGGATCCAAATGAAGAGCGT 58.343 50.000 13.41 0.00 0.00 5.07
23 24 1.594862 CGGATCCAAATGAAGAGCGTC 59.405 52.381 13.41 0.00 0.00 5.19
24 25 1.594862 GGATCCAAATGAAGAGCGTCG 59.405 52.381 6.95 0.00 0.00 5.12
25 26 2.271800 GATCCAAATGAAGAGCGTCGT 58.728 47.619 0.00 0.00 0.00 4.34
26 27 2.163818 TCCAAATGAAGAGCGTCGTT 57.836 45.000 0.00 0.00 0.00 3.85
27 28 2.489971 TCCAAATGAAGAGCGTCGTTT 58.510 42.857 0.00 0.00 37.24 3.60
28 29 2.875933 TCCAAATGAAGAGCGTCGTTTT 59.124 40.909 1.70 0.00 35.09 2.43
29 30 3.314080 TCCAAATGAAGAGCGTCGTTTTT 59.686 39.130 1.70 0.00 35.09 1.94
30 31 3.421888 CCAAATGAAGAGCGTCGTTTTTG 59.578 43.478 1.70 0.00 35.09 2.44
31 32 4.278858 CAAATGAAGAGCGTCGTTTTTGA 58.721 39.130 1.70 0.00 35.09 2.69
32 33 3.795561 ATGAAGAGCGTCGTTTTTGAG 57.204 42.857 0.00 0.00 0.00 3.02
33 34 2.816689 TGAAGAGCGTCGTTTTTGAGA 58.183 42.857 0.00 0.00 0.00 3.27
34 35 3.390135 TGAAGAGCGTCGTTTTTGAGAT 58.610 40.909 0.00 0.00 0.00 2.75
35 36 3.807622 TGAAGAGCGTCGTTTTTGAGATT 59.192 39.130 0.00 0.00 0.00 2.40
36 37 4.986034 TGAAGAGCGTCGTTTTTGAGATTA 59.014 37.500 0.00 0.00 0.00 1.75
37 38 4.905412 AGAGCGTCGTTTTTGAGATTAC 57.095 40.909 0.00 0.00 0.00 1.89
38 39 4.304110 AGAGCGTCGTTTTTGAGATTACA 58.696 39.130 0.00 0.00 0.00 2.41
39 40 4.748102 AGAGCGTCGTTTTTGAGATTACAA 59.252 37.500 0.00 0.00 0.00 2.41
40 41 5.408604 AGAGCGTCGTTTTTGAGATTACAAT 59.591 36.000 0.00 0.00 0.00 2.71
41 42 5.382303 AGCGTCGTTTTTGAGATTACAATG 58.618 37.500 0.00 0.00 0.00 2.82
42 43 5.178623 AGCGTCGTTTTTGAGATTACAATGA 59.821 36.000 0.00 0.00 0.00 2.57
43 44 5.280678 GCGTCGTTTTTGAGATTACAATGAC 59.719 40.000 0.00 0.00 0.00 3.06
44 45 6.359545 CGTCGTTTTTGAGATTACAATGACA 58.640 36.000 0.00 0.00 0.00 3.58
45 46 6.516355 CGTCGTTTTTGAGATTACAATGACAG 59.484 38.462 0.00 0.00 0.00 3.51
46 47 6.303259 GTCGTTTTTGAGATTACAATGACAGC 59.697 38.462 0.00 0.00 0.00 4.40
47 48 6.017523 TCGTTTTTGAGATTACAATGACAGCA 60.018 34.615 0.00 0.00 0.00 4.41
48 49 6.303970 CGTTTTTGAGATTACAATGACAGCAG 59.696 38.462 0.00 0.00 0.00 4.24
49 50 7.362662 GTTTTTGAGATTACAATGACAGCAGA 58.637 34.615 0.00 0.00 0.00 4.26
50 51 7.692460 TTTTGAGATTACAATGACAGCAGAT 57.308 32.000 0.00 0.00 0.00 2.90
51 52 8.791327 TTTTGAGATTACAATGACAGCAGATA 57.209 30.769 0.00 0.00 0.00 1.98
52 53 7.776933 TTGAGATTACAATGACAGCAGATAC 57.223 36.000 0.00 0.00 0.00 2.24
53 54 5.979517 TGAGATTACAATGACAGCAGATACG 59.020 40.000 0.00 0.00 0.00 3.06
54 55 5.907207 AGATTACAATGACAGCAGATACGT 58.093 37.500 0.00 0.00 0.00 3.57
73 74 4.347813 ACGTGTGCTCATGTTTGTTTTAC 58.652 39.130 7.80 0.00 40.42 2.01
80 81 8.173775 TGTGCTCATGTTTGTTTTACATTTTTG 58.826 29.630 0.00 0.00 34.11 2.44
117 118 1.286880 GGCTCATGTTTGCAAGCGT 59.713 52.632 8.84 5.42 35.58 5.07
203 262 3.744940 TTTTGAGATTCTCCAGCCCAT 57.255 42.857 11.12 0.00 0.00 4.00
225 288 1.382146 AGCCCATCCAAGCCCATTG 60.382 57.895 0.00 0.00 38.74 2.82
226 289 3.097921 GCCCATCCAAGCCCATTGC 62.098 63.158 0.00 0.00 37.60 3.56
229 292 1.052124 CCATCCAAGCCCATTGCCAT 61.052 55.000 0.00 0.00 42.71 4.40
270 333 4.057428 GACGCACGAGTCCAGCCT 62.057 66.667 0.00 0.00 35.22 4.58
284 349 0.890996 CAGCCTCAAACCCTCACCAC 60.891 60.000 0.00 0.00 0.00 4.16
285 350 1.150536 GCCTCAAACCCTCACCACA 59.849 57.895 0.00 0.00 0.00 4.17
300 365 0.900647 CCACACCCTCTCCGTCTCTT 60.901 60.000 0.00 0.00 0.00 2.85
384 469 3.640407 GCTGCACCCTCACCCAGA 61.640 66.667 0.00 0.00 0.00 3.86
794 5203 0.388659 GCTGCAGATCCATCGTCTCT 59.611 55.000 20.43 0.00 0.00 3.10
813 5222 5.761234 GTCTCTGATCTACAGTACTACCTGG 59.239 48.000 0.00 0.00 45.86 4.45
816 5225 5.368816 TCTGATCTACAGTACTACCTGGCTA 59.631 44.000 0.00 0.00 45.86 3.93
826 5235 1.341531 CTACCTGGCTATCTTCGGGTG 59.658 57.143 4.26 0.00 42.18 4.61
873 5290 0.622665 CCTGGCTCCTTGGTTCTGAT 59.377 55.000 0.00 0.00 0.00 2.90
960 5377 1.028330 CCAAGCTGTGCATCGGTCAT 61.028 55.000 0.00 0.00 0.00 3.06
1207 5624 0.112995 TTCCAAGGACAGGCTGCAAT 59.887 50.000 15.89 0.00 0.00 3.56
1356 5773 2.933906 GGAAAACGGATTGCTACATCGA 59.066 45.455 0.00 0.00 0.00 3.59
1681 6115 6.266323 AGTACTATTTCTGCACACTGTATCG 58.734 40.000 0.00 0.00 0.00 2.92
1707 6141 3.008157 TGTTCTGAAATGGCCATTGCAAT 59.992 39.130 34.05 19.11 36.00 3.56
1737 6172 4.635765 TGCAATCTTCAACCTATCTTTCCG 59.364 41.667 0.00 0.00 0.00 4.30
1885 6321 5.640357 ACACCGTGTTAAACATGTATACCAG 59.360 40.000 0.00 0.00 33.37 4.00
1887 6323 5.640357 ACCGTGTTAAACATGTATACCAGTG 59.360 40.000 0.00 0.00 33.37 3.66
1888 6324 5.446741 CCGTGTTAAACATGTATACCAGTGC 60.447 44.000 0.00 0.00 33.37 4.40
2007 6444 5.768164 GGGGAACATATGTTATGGTAACCTG 59.232 44.000 20.83 0.00 38.56 4.00
2011 6450 8.962679 GGAACATATGTTATGGTAACCTGAAAA 58.037 33.333 20.83 0.00 38.56 2.29
2030 6469 9.757227 CCTGAAAAGGTTATGACATTAACAAAA 57.243 29.630 0.00 0.00 34.42 2.44
2068 6507 9.486497 TTGATAAGCATTTAACAAAATTCAGCA 57.514 25.926 0.00 0.00 31.21 4.41
2069 6508 9.656040 TGATAAGCATTTAACAAAATTCAGCAT 57.344 25.926 0.00 0.00 0.00 3.79
2070 6509 9.910511 GATAAGCATTTAACAAAATTCAGCATG 57.089 29.630 0.00 0.00 37.54 4.06
2083 6522 3.280211 GCATGATGTGGTGCTGCA 58.720 55.556 0.00 0.00 38.30 4.41
2084 6523 1.138883 GCATGATGTGGTGCTGCAG 59.861 57.895 10.11 10.11 38.30 4.41
2085 6524 1.138883 CATGATGTGGTGCTGCAGC 59.861 57.895 31.89 31.89 42.50 5.25
2097 6536 1.978542 GCTGCAGCAAACTCATCAAG 58.021 50.000 33.36 0.00 41.59 3.02
2098 6537 1.538512 GCTGCAGCAAACTCATCAAGA 59.461 47.619 33.36 0.00 41.59 3.02
2099 6538 2.030540 GCTGCAGCAAACTCATCAAGAA 60.031 45.455 33.36 0.00 41.59 2.52
2100 6539 3.551454 GCTGCAGCAAACTCATCAAGAAA 60.551 43.478 33.36 0.00 41.59 2.52
2101 6540 4.806330 CTGCAGCAAACTCATCAAGAAAT 58.194 39.130 0.00 0.00 0.00 2.17
2102 6541 5.204409 TGCAGCAAACTCATCAAGAAATT 57.796 34.783 0.00 0.00 0.00 1.82
2103 6542 5.603596 TGCAGCAAACTCATCAAGAAATTT 58.396 33.333 0.00 0.00 0.00 1.82
2104 6543 5.693104 TGCAGCAAACTCATCAAGAAATTTC 59.307 36.000 10.33 10.33 0.00 2.17
2105 6544 5.119743 GCAGCAAACTCATCAAGAAATTTCC 59.880 40.000 14.61 0.00 0.00 3.13
2106 6545 6.453092 CAGCAAACTCATCAAGAAATTTCCT 58.547 36.000 14.61 0.00 0.00 3.36
2107 6546 7.596494 CAGCAAACTCATCAAGAAATTTCCTA 58.404 34.615 14.61 1.09 0.00 2.94
2108 6547 8.084073 CAGCAAACTCATCAAGAAATTTCCTAA 58.916 33.333 14.61 0.76 0.00 2.69
2109 6548 8.810041 AGCAAACTCATCAAGAAATTTCCTAAT 58.190 29.630 14.61 3.12 0.00 1.73
2110 6549 9.428097 GCAAACTCATCAAGAAATTTCCTAATT 57.572 29.630 14.61 0.00 35.49 1.40
2139 6578 7.572523 AAGAAACAGAGATTTCATGAACACA 57.427 32.000 7.89 0.00 40.43 3.72
2140 6579 6.963796 AGAAACAGAGATTTCATGAACACAC 58.036 36.000 7.89 4.22 40.43 3.82
2141 6580 6.769822 AGAAACAGAGATTTCATGAACACACT 59.230 34.615 7.89 6.43 40.43 3.55
2142 6581 5.936686 ACAGAGATTTCATGAACACACTG 57.063 39.130 23.36 23.36 0.00 3.66
2143 6582 4.214971 ACAGAGATTTCATGAACACACTGC 59.785 41.667 24.15 8.55 0.00 4.40
2144 6583 3.755378 AGAGATTTCATGAACACACTGCC 59.245 43.478 7.89 0.00 0.00 4.85
2145 6584 3.489355 AGATTTCATGAACACACTGCCA 58.511 40.909 7.89 0.00 0.00 4.92
2146 6585 3.890756 AGATTTCATGAACACACTGCCAA 59.109 39.130 7.89 0.00 0.00 4.52
2147 6586 3.435105 TTTCATGAACACACTGCCAAC 57.565 42.857 7.89 0.00 0.00 3.77
2148 6587 1.317613 TCATGAACACACTGCCAACC 58.682 50.000 0.00 0.00 0.00 3.77
2149 6588 1.031235 CATGAACACACTGCCAACCA 58.969 50.000 0.00 0.00 0.00 3.67
2150 6589 1.408340 CATGAACACACTGCCAACCAA 59.592 47.619 0.00 0.00 0.00 3.67
2151 6590 1.102154 TGAACACACTGCCAACCAAG 58.898 50.000 0.00 0.00 0.00 3.61
2152 6591 0.385390 GAACACACTGCCAACCAAGG 59.615 55.000 0.00 0.00 0.00 3.61
2153 6592 0.033601 AACACACTGCCAACCAAGGA 60.034 50.000 0.00 0.00 0.00 3.36
2154 6593 0.185901 ACACACTGCCAACCAAGGAT 59.814 50.000 0.00 0.00 0.00 3.24
2155 6594 0.599558 CACACTGCCAACCAAGGATG 59.400 55.000 0.00 0.00 0.00 3.51
2156 6595 0.478072 ACACTGCCAACCAAGGATGA 59.522 50.000 0.00 0.00 0.00 2.92
2157 6596 1.133513 ACACTGCCAACCAAGGATGAA 60.134 47.619 0.00 0.00 0.00 2.57
2158 6597 1.270550 CACTGCCAACCAAGGATGAAC 59.729 52.381 0.00 0.00 0.00 3.18
2159 6598 0.890683 CTGCCAACCAAGGATGAACC 59.109 55.000 0.00 0.00 39.35 3.62
2160 6599 0.187117 TGCCAACCAAGGATGAACCA 59.813 50.000 0.00 0.00 42.04 3.67
2161 6600 1.337118 GCCAACCAAGGATGAACCAA 58.663 50.000 0.00 0.00 42.04 3.67
2162 6601 1.901833 GCCAACCAAGGATGAACCAAT 59.098 47.619 0.00 0.00 42.04 3.16
2163 6602 2.354003 GCCAACCAAGGATGAACCAATG 60.354 50.000 0.00 0.00 42.04 2.82
2164 6603 3.164268 CCAACCAAGGATGAACCAATGA 58.836 45.455 0.00 0.00 42.04 2.57
2165 6604 3.194116 CCAACCAAGGATGAACCAATGAG 59.806 47.826 0.00 0.00 42.04 2.90
2166 6605 2.450476 ACCAAGGATGAACCAATGAGC 58.550 47.619 0.00 0.00 42.04 4.26
2167 6606 2.225091 ACCAAGGATGAACCAATGAGCA 60.225 45.455 0.00 0.00 42.04 4.26
2168 6607 2.827322 CCAAGGATGAACCAATGAGCAA 59.173 45.455 0.00 0.00 42.04 3.91
2169 6608 3.119245 CCAAGGATGAACCAATGAGCAAG 60.119 47.826 0.00 0.00 42.04 4.01
2170 6609 2.097825 AGGATGAACCAATGAGCAAGC 58.902 47.619 0.00 0.00 42.04 4.01
2171 6610 2.097825 GGATGAACCAATGAGCAAGCT 58.902 47.619 0.00 0.00 38.79 3.74
2172 6611 3.054139 AGGATGAACCAATGAGCAAGCTA 60.054 43.478 0.00 0.00 42.04 3.32
2173 6612 3.696051 GGATGAACCAATGAGCAAGCTAA 59.304 43.478 0.00 0.00 38.79 3.09
2174 6613 4.439289 GGATGAACCAATGAGCAAGCTAAC 60.439 45.833 0.00 0.00 38.79 2.34
2175 6614 3.485394 TGAACCAATGAGCAAGCTAACA 58.515 40.909 0.00 0.00 0.00 2.41
2176 6615 3.888323 TGAACCAATGAGCAAGCTAACAA 59.112 39.130 0.00 0.00 0.00 2.83
2177 6616 4.340666 TGAACCAATGAGCAAGCTAACAAA 59.659 37.500 0.00 0.00 0.00 2.83
2178 6617 5.010922 TGAACCAATGAGCAAGCTAACAAAT 59.989 36.000 0.00 0.00 0.00 2.32
2179 6618 5.473066 ACCAATGAGCAAGCTAACAAATT 57.527 34.783 0.00 0.00 0.00 1.82
2180 6619 5.232463 ACCAATGAGCAAGCTAACAAATTG 58.768 37.500 0.00 0.00 0.00 2.32
2186 6625 3.905784 GCAAGCTAACAAATTGCAGACT 58.094 40.909 4.38 0.00 46.64 3.24
2187 6626 4.301628 GCAAGCTAACAAATTGCAGACTT 58.698 39.130 4.38 0.00 46.64 3.01
2188 6627 4.746611 GCAAGCTAACAAATTGCAGACTTT 59.253 37.500 4.38 0.00 46.64 2.66
2189 6628 5.332808 GCAAGCTAACAAATTGCAGACTTTG 60.333 40.000 13.68 13.68 46.64 2.77
2190 6629 5.520376 AGCTAACAAATTGCAGACTTTGT 57.480 34.783 14.66 14.66 45.03 2.83
2192 6631 5.979517 AGCTAACAAATTGCAGACTTTGTTC 59.020 36.000 26.46 18.55 46.99 3.18
2193 6632 5.175673 GCTAACAAATTGCAGACTTTGTTCC 59.824 40.000 26.46 19.28 46.99 3.62
2194 6633 4.734398 ACAAATTGCAGACTTTGTTCCA 57.266 36.364 14.66 0.00 41.51 3.53
2195 6634 4.432712 ACAAATTGCAGACTTTGTTCCAC 58.567 39.130 14.66 0.00 41.51 4.02
2196 6635 4.081752 ACAAATTGCAGACTTTGTTCCACA 60.082 37.500 14.66 0.00 41.51 4.17
2197 6636 3.996150 ATTGCAGACTTTGTTCCACAG 57.004 42.857 0.00 0.00 0.00 3.66
2198 6637 2.708216 TGCAGACTTTGTTCCACAGA 57.292 45.000 0.00 0.00 0.00 3.41
2199 6638 2.564771 TGCAGACTTTGTTCCACAGAG 58.435 47.619 0.00 0.00 36.50 3.35
2200 6639 2.170397 TGCAGACTTTGTTCCACAGAGA 59.830 45.455 1.67 0.00 34.32 3.10
2201 6640 3.206150 GCAGACTTTGTTCCACAGAGAA 58.794 45.455 1.67 0.00 34.32 2.87
2202 6641 3.249559 GCAGACTTTGTTCCACAGAGAAG 59.750 47.826 1.67 0.00 34.32 2.85
2203 6642 4.697514 CAGACTTTGTTCCACAGAGAAGA 58.302 43.478 1.67 0.00 34.32 2.87
2204 6643 4.749099 CAGACTTTGTTCCACAGAGAAGAG 59.251 45.833 1.67 0.00 34.32 2.85
2205 6644 3.471680 ACTTTGTTCCACAGAGAAGAGC 58.528 45.455 1.67 0.00 34.32 4.09
2206 6645 3.118261 ACTTTGTTCCACAGAGAAGAGCA 60.118 43.478 1.67 0.00 34.32 4.26
2207 6646 2.827800 TGTTCCACAGAGAAGAGCAG 57.172 50.000 0.00 0.00 0.00 4.24
2208 6647 1.345741 TGTTCCACAGAGAAGAGCAGG 59.654 52.381 0.00 0.00 0.00 4.85
2209 6648 1.346068 GTTCCACAGAGAAGAGCAGGT 59.654 52.381 0.00 0.00 0.00 4.00
2210 6649 0.972134 TCCACAGAGAAGAGCAGGTG 59.028 55.000 0.00 0.00 0.00 4.00
2211 6650 0.673022 CCACAGAGAAGAGCAGGTGC 60.673 60.000 0.00 0.00 42.49 5.01
2226 6665 5.728351 GCAGGTGCGTAAGAATACATAAA 57.272 39.130 0.00 0.00 43.02 1.40
2227 6666 6.300354 GCAGGTGCGTAAGAATACATAAAT 57.700 37.500 0.00 0.00 43.02 1.40
2228 6667 6.363473 GCAGGTGCGTAAGAATACATAAATC 58.637 40.000 0.00 0.00 43.02 2.17
2229 6668 6.202954 GCAGGTGCGTAAGAATACATAAATCT 59.797 38.462 0.00 0.00 43.02 2.40
2230 6669 7.567571 CAGGTGCGTAAGAATACATAAATCTG 58.432 38.462 0.00 0.00 43.02 2.90
2231 6670 7.438160 CAGGTGCGTAAGAATACATAAATCTGA 59.562 37.037 0.00 0.00 43.02 3.27
2232 6671 7.985184 AGGTGCGTAAGAATACATAAATCTGAA 59.015 33.333 0.00 0.00 43.02 3.02
2233 6672 8.062448 GGTGCGTAAGAATACATAAATCTGAAC 58.938 37.037 0.00 0.00 43.02 3.18
2234 6673 8.818057 GTGCGTAAGAATACATAAATCTGAACT 58.182 33.333 0.00 0.00 43.02 3.01
2235 6674 9.378551 TGCGTAAGAATACATAAATCTGAACTT 57.621 29.630 0.00 0.00 43.02 2.66
2236 6675 9.851043 GCGTAAGAATACATAAATCTGAACTTC 57.149 33.333 0.00 0.00 43.02 3.01
2295 6734 9.442047 AAAAACACAAATAACATTCCAGTTTGA 57.558 25.926 0.00 0.00 34.71 2.69
2296 6735 9.612066 AAAACACAAATAACATTCCAGTTTGAT 57.388 25.926 0.00 0.00 34.71 2.57
2297 6736 8.816640 AACACAAATAACATTCCAGTTTGATC 57.183 30.769 0.00 0.00 34.71 2.92
2298 6737 7.378181 ACACAAATAACATTCCAGTTTGATCC 58.622 34.615 0.00 0.00 34.71 3.36
2299 6738 6.813152 CACAAATAACATTCCAGTTTGATCCC 59.187 38.462 0.00 0.00 34.71 3.85
2300 6739 6.496565 ACAAATAACATTCCAGTTTGATCCCA 59.503 34.615 0.00 0.00 34.71 4.37
2301 6740 7.180766 ACAAATAACATTCCAGTTTGATCCCAT 59.819 33.333 0.00 0.00 34.71 4.00
2302 6741 7.738437 AATAACATTCCAGTTTGATCCCATT 57.262 32.000 0.00 0.00 33.07 3.16
2303 6742 8.837099 AATAACATTCCAGTTTGATCCCATTA 57.163 30.769 0.00 0.00 33.07 1.90
2304 6743 8.837099 ATAACATTCCAGTTTGATCCCATTAA 57.163 30.769 0.00 0.00 33.07 1.40
2305 6744 7.552050 AACATTCCAGTTTGATCCCATTAAA 57.448 32.000 0.00 0.00 0.00 1.52
2306 6745 7.738437 ACATTCCAGTTTGATCCCATTAAAT 57.262 32.000 0.00 0.00 0.00 1.40
2307 6746 8.837099 ACATTCCAGTTTGATCCCATTAAATA 57.163 30.769 0.00 0.00 0.00 1.40
2308 6747 9.438163 ACATTCCAGTTTGATCCCATTAAATAT 57.562 29.630 0.00 0.00 0.00 1.28
2309 6748 9.701098 CATTCCAGTTTGATCCCATTAAATATG 57.299 33.333 0.00 0.00 0.00 1.78
2310 6749 9.659135 ATTCCAGTTTGATCCCATTAAATATGA 57.341 29.630 0.00 0.00 0.00 2.15
2311 6750 8.696043 TCCAGTTTGATCCCATTAAATATGAG 57.304 34.615 0.00 0.00 0.00 2.90
2312 6751 7.231317 TCCAGTTTGATCCCATTAAATATGAGC 59.769 37.037 0.00 0.00 0.00 4.26
2313 6752 7.232127 CCAGTTTGATCCCATTAAATATGAGCT 59.768 37.037 0.00 0.00 0.00 4.09
2314 6753 8.080417 CAGTTTGATCCCATTAAATATGAGCTG 58.920 37.037 0.00 0.00 0.00 4.24
2315 6754 7.781693 AGTTTGATCCCATTAAATATGAGCTGT 59.218 33.333 0.00 0.00 0.00 4.40
2316 6755 9.066892 GTTTGATCCCATTAAATATGAGCTGTA 57.933 33.333 0.00 0.00 0.00 2.74
2317 6756 9.639563 TTTGATCCCATTAAATATGAGCTGTAA 57.360 29.630 0.00 0.00 0.00 2.41
2318 6757 8.853077 TGATCCCATTAAATATGAGCTGTAAG 57.147 34.615 0.00 0.00 0.00 2.34
2319 6758 8.439971 TGATCCCATTAAATATGAGCTGTAAGT 58.560 33.333 0.00 0.00 35.30 2.24
2320 6759 9.944376 GATCCCATTAAATATGAGCTGTAAGTA 57.056 33.333 0.00 0.00 35.30 2.24
2322 6761 9.778741 TCCCATTAAATATGAGCTGTAAGTAAG 57.221 33.333 0.00 0.00 35.30 2.34
2323 6762 9.778741 CCCATTAAATATGAGCTGTAAGTAAGA 57.221 33.333 0.00 0.00 35.30 2.10
2328 6767 7.778470 AATATGAGCTGTAAGTAAGAGTTGC 57.222 36.000 0.00 0.00 35.30 4.17
2329 6768 4.600692 TGAGCTGTAAGTAAGAGTTGCA 57.399 40.909 0.00 0.00 35.30 4.08
2330 6769 5.152623 TGAGCTGTAAGTAAGAGTTGCAT 57.847 39.130 0.00 0.00 35.30 3.96
2331 6770 5.171476 TGAGCTGTAAGTAAGAGTTGCATC 58.829 41.667 0.00 0.00 35.30 3.91
2332 6771 5.152623 AGCTGTAAGTAAGAGTTGCATCA 57.847 39.130 0.00 0.00 35.30 3.07
2333 6772 5.551233 AGCTGTAAGTAAGAGTTGCATCAA 58.449 37.500 0.00 0.00 35.30 2.57
2334 6773 5.997746 AGCTGTAAGTAAGAGTTGCATCAAA 59.002 36.000 0.00 0.00 35.30 2.69
2335 6774 6.148480 AGCTGTAAGTAAGAGTTGCATCAAAG 59.852 38.462 0.00 0.00 35.30 2.77
2336 6775 6.073003 GCTGTAAGTAAGAGTTGCATCAAAGT 60.073 38.462 0.00 0.00 35.30 2.66
2337 6776 7.421530 TGTAAGTAAGAGTTGCATCAAAGTC 57.578 36.000 0.00 0.00 0.00 3.01
2338 6777 6.989759 TGTAAGTAAGAGTTGCATCAAAGTCA 59.010 34.615 0.00 0.00 32.80 3.41
2339 6778 6.551385 AAGTAAGAGTTGCATCAAAGTCAG 57.449 37.500 0.00 0.00 32.80 3.51
2340 6779 4.999950 AGTAAGAGTTGCATCAAAGTCAGG 59.000 41.667 0.00 0.00 32.80 3.86
2341 6780 3.498774 AGAGTTGCATCAAAGTCAGGT 57.501 42.857 0.00 0.00 32.80 4.00
2342 6781 3.406764 AGAGTTGCATCAAAGTCAGGTC 58.593 45.455 0.00 0.00 32.80 3.85
2343 6782 3.141398 GAGTTGCATCAAAGTCAGGTCA 58.859 45.455 0.00 0.00 31.06 4.02
2344 6783 2.880890 AGTTGCATCAAAGTCAGGTCAC 59.119 45.455 0.00 0.00 0.00 3.67
2345 6784 2.880890 GTTGCATCAAAGTCAGGTCACT 59.119 45.455 0.00 0.00 0.00 3.41
2346 6785 2.771089 TGCATCAAAGTCAGGTCACTC 58.229 47.619 0.00 0.00 0.00 3.51
2347 6786 1.728971 GCATCAAAGTCAGGTCACTCG 59.271 52.381 0.00 0.00 0.00 4.18
2348 6787 1.728971 CATCAAAGTCAGGTCACTCGC 59.271 52.381 0.00 0.00 0.00 5.03
2349 6788 0.750249 TCAAAGTCAGGTCACTCGCA 59.250 50.000 0.00 0.00 0.00 5.10
2350 6789 1.138069 TCAAAGTCAGGTCACTCGCAA 59.862 47.619 0.00 0.00 0.00 4.85
2351 6790 1.939934 CAAAGTCAGGTCACTCGCAAA 59.060 47.619 0.00 0.00 0.00 3.68
2352 6791 2.325583 AAGTCAGGTCACTCGCAAAA 57.674 45.000 0.00 0.00 0.00 2.44
2353 6792 2.325583 AGTCAGGTCACTCGCAAAAA 57.674 45.000 0.00 0.00 0.00 1.94
2375 6814 2.052782 AAAAAGAGAACGTGGCAGGT 57.947 45.000 7.07 7.07 0.00 4.00
2376 6815 2.922740 AAAAGAGAACGTGGCAGGTA 57.077 45.000 13.85 0.00 0.00 3.08
2377 6816 3.418684 AAAAGAGAACGTGGCAGGTAT 57.581 42.857 13.85 5.47 0.00 2.73
2378 6817 4.546829 AAAAGAGAACGTGGCAGGTATA 57.453 40.909 13.85 0.00 0.00 1.47
2379 6818 4.755266 AAAGAGAACGTGGCAGGTATAT 57.245 40.909 13.85 2.46 0.00 0.86
2380 6819 4.755266 AAGAGAACGTGGCAGGTATATT 57.245 40.909 13.85 6.41 0.00 1.28
2381 6820 5.864418 AAGAGAACGTGGCAGGTATATTA 57.136 39.130 13.85 0.00 0.00 0.98
2382 6821 6.420913 AAGAGAACGTGGCAGGTATATTAT 57.579 37.500 13.85 0.00 0.00 1.28
2383 6822 6.420913 AGAGAACGTGGCAGGTATATTATT 57.579 37.500 13.85 0.00 0.00 1.40
2384 6823 7.534723 AGAGAACGTGGCAGGTATATTATTA 57.465 36.000 13.85 0.00 0.00 0.98
2385 6824 7.376615 AGAGAACGTGGCAGGTATATTATTAC 58.623 38.462 13.85 0.00 0.00 1.89
2386 6825 7.232941 AGAGAACGTGGCAGGTATATTATTACT 59.767 37.037 13.85 0.00 0.00 2.24
2387 6826 7.152645 AGAACGTGGCAGGTATATTATTACTG 58.847 38.462 13.85 0.00 0.00 2.74
2388 6827 5.790593 ACGTGGCAGGTATATTATTACTGG 58.209 41.667 11.70 0.00 0.00 4.00
2389 6828 5.541101 ACGTGGCAGGTATATTATTACTGGA 59.459 40.000 11.70 0.00 0.00 3.86
2390 6829 6.042322 ACGTGGCAGGTATATTATTACTGGAA 59.958 38.462 11.70 0.00 0.00 3.53
2391 6830 6.932400 CGTGGCAGGTATATTATTACTGGAAA 59.068 38.462 0.00 0.00 0.00 3.13
2392 6831 7.606456 CGTGGCAGGTATATTATTACTGGAAAT 59.394 37.037 0.00 0.00 0.00 2.17
2393 6832 9.297037 GTGGCAGGTATATTATTACTGGAAATT 57.703 33.333 0.00 0.00 0.00 1.82
2394 6833 9.295825 TGGCAGGTATATTATTACTGGAAATTG 57.704 33.333 0.00 0.00 0.00 2.32
2395 6834 9.515226 GGCAGGTATATTATTACTGGAAATTGA 57.485 33.333 0.00 0.00 0.00 2.57
2418 6857 7.708051 TGACTAGATAGTTTAGAGACATGTGC 58.292 38.462 1.15 0.00 36.50 4.57
2419 6858 7.339466 TGACTAGATAGTTTAGAGACATGTGCA 59.661 37.037 1.15 0.00 36.50 4.57
2420 6859 8.067751 ACTAGATAGTTTAGAGACATGTGCAA 57.932 34.615 1.15 0.00 31.13 4.08
2421 6860 8.531982 ACTAGATAGTTTAGAGACATGTGCAAA 58.468 33.333 1.15 0.00 31.13 3.68
2422 6861 7.602517 AGATAGTTTAGAGACATGTGCAAAC 57.397 36.000 1.15 7.95 0.00 2.93
2423 6862 7.390027 AGATAGTTTAGAGACATGTGCAAACT 58.610 34.615 19.35 19.35 39.06 2.66
2424 6863 8.531982 AGATAGTTTAGAGACATGTGCAAACTA 58.468 33.333 21.21 21.21 40.65 2.24
2425 6864 9.319143 GATAGTTTAGAGACATGTGCAAACTAT 57.681 33.333 25.38 25.38 45.14 2.12
2426 6865 7.369803 AGTTTAGAGACATGTGCAAACTATG 57.630 36.000 1.15 0.00 35.17 2.23
2427 6866 6.372659 AGTTTAGAGACATGTGCAAACTATGG 59.627 38.462 1.15 0.00 35.17 2.74
2428 6867 3.012518 AGAGACATGTGCAAACTATGGC 58.987 45.455 1.15 0.00 0.00 4.40
2429 6868 2.094675 AGACATGTGCAAACTATGGCC 58.905 47.619 1.15 0.00 29.97 5.36
2430 6869 1.818060 GACATGTGCAAACTATGGCCA 59.182 47.619 8.56 8.56 0.00 5.36
2431 6870 2.428171 GACATGTGCAAACTATGGCCAT 59.572 45.455 24.45 24.45 0.00 4.40
2432 6871 3.630168 ACATGTGCAAACTATGGCCATA 58.370 40.909 24.02 24.02 0.00 2.74
2433 6872 4.217510 ACATGTGCAAACTATGGCCATAT 58.782 39.130 25.62 9.55 0.00 1.78
2434 6873 4.279169 ACATGTGCAAACTATGGCCATATC 59.721 41.667 25.62 12.60 0.00 1.63
2435 6874 3.895998 TGTGCAAACTATGGCCATATCA 58.104 40.909 25.62 14.76 0.00 2.15
2436 6875 4.276642 TGTGCAAACTATGGCCATATCAA 58.723 39.130 25.62 5.78 0.00 2.57
2437 6876 4.708909 TGTGCAAACTATGGCCATATCAAA 59.291 37.500 25.62 10.89 0.00 2.69
2438 6877 5.043248 GTGCAAACTATGGCCATATCAAAC 58.957 41.667 25.62 15.32 0.00 2.93
2439 6878 4.708909 TGCAAACTATGGCCATATCAAACA 59.291 37.500 25.62 17.52 0.00 2.83
2440 6879 5.043248 GCAAACTATGGCCATATCAAACAC 58.957 41.667 25.62 8.89 0.00 3.32
2441 6880 5.163519 GCAAACTATGGCCATATCAAACACT 60.164 40.000 25.62 0.00 0.00 3.55
2442 6881 6.498304 CAAACTATGGCCATATCAAACACTC 58.502 40.000 25.62 0.00 0.00 3.51
2443 6882 4.718961 ACTATGGCCATATCAAACACTCC 58.281 43.478 25.62 0.00 0.00 3.85
2444 6883 2.435372 TGGCCATATCAAACACTCCC 57.565 50.000 0.00 0.00 0.00 4.30
2445 6884 1.922447 TGGCCATATCAAACACTCCCT 59.078 47.619 0.00 0.00 0.00 4.20
2446 6885 2.092429 TGGCCATATCAAACACTCCCTC 60.092 50.000 0.00 0.00 0.00 4.30
2447 6886 2.576615 GCCATATCAAACACTCCCTCC 58.423 52.381 0.00 0.00 0.00 4.30
2448 6887 2.092429 GCCATATCAAACACTCCCTCCA 60.092 50.000 0.00 0.00 0.00 3.86
2449 6888 3.435601 GCCATATCAAACACTCCCTCCAT 60.436 47.826 0.00 0.00 0.00 3.41
2450 6889 4.392940 CCATATCAAACACTCCCTCCATC 58.607 47.826 0.00 0.00 0.00 3.51
2451 6890 4.392940 CATATCAAACACTCCCTCCATCC 58.607 47.826 0.00 0.00 0.00 3.51
2452 6891 0.991920 TCAAACACTCCCTCCATCCC 59.008 55.000 0.00 0.00 0.00 3.85
2453 6892 0.698238 CAAACACTCCCTCCATCCCA 59.302 55.000 0.00 0.00 0.00 4.37
2454 6893 1.285962 CAAACACTCCCTCCATCCCAT 59.714 52.381 0.00 0.00 0.00 4.00
2455 6894 2.509548 CAAACACTCCCTCCATCCCATA 59.490 50.000 0.00 0.00 0.00 2.74
2456 6895 2.587060 ACACTCCCTCCATCCCATAA 57.413 50.000 0.00 0.00 0.00 1.90
2457 6896 3.080660 ACACTCCCTCCATCCCATAAT 57.919 47.619 0.00 0.00 0.00 1.28
2458 6897 2.713167 ACACTCCCTCCATCCCATAATG 59.287 50.000 0.00 0.00 0.00 1.90
2459 6898 2.713167 CACTCCCTCCATCCCATAATGT 59.287 50.000 0.00 0.00 0.00 2.71
2460 6899 3.909995 CACTCCCTCCATCCCATAATGTA 59.090 47.826 0.00 0.00 0.00 2.29
2461 6900 4.350816 CACTCCCTCCATCCCATAATGTAA 59.649 45.833 0.00 0.00 0.00 2.41
2462 6901 4.599241 ACTCCCTCCATCCCATAATGTAAG 59.401 45.833 0.00 0.00 0.00 2.34
2463 6902 4.838403 TCCCTCCATCCCATAATGTAAGA 58.162 43.478 0.00 0.00 0.00 2.10
2464 6903 4.597507 TCCCTCCATCCCATAATGTAAGAC 59.402 45.833 0.00 0.00 0.00 3.01
2465 6904 4.563580 CCCTCCATCCCATAATGTAAGACG 60.564 50.000 0.00 0.00 0.00 4.18
2466 6905 4.040461 CCTCCATCCCATAATGTAAGACGT 59.960 45.833 0.00 0.00 0.00 4.34
2467 6906 5.454755 CCTCCATCCCATAATGTAAGACGTT 60.455 44.000 0.00 0.00 0.00 3.99
2468 6907 5.996644 TCCATCCCATAATGTAAGACGTTT 58.003 37.500 0.00 0.00 0.00 3.60
2469 6908 6.419791 TCCATCCCATAATGTAAGACGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
2470 6909 6.540914 TCCATCCCATAATGTAAGACGTTTTC 59.459 38.462 0.00 0.00 0.00 2.29
2486 6925 5.143916 CGTTTTCGCAAGCTAACATATCT 57.856 39.130 0.00 0.00 36.22 1.98
2487 6926 5.560148 CGTTTTCGCAAGCTAACATATCTT 58.440 37.500 0.00 0.00 36.22 2.40
2488 6927 5.449113 CGTTTTCGCAAGCTAACATATCTTG 59.551 40.000 0.00 0.00 39.95 3.02
2496 6935 6.970761 CAAGCTAACATATCTTGCAAAAACG 58.029 36.000 0.00 0.00 32.07 3.60
2497 6936 6.254281 AGCTAACATATCTTGCAAAAACGT 57.746 33.333 0.00 0.00 0.00 3.99
2498 6937 6.314784 AGCTAACATATCTTGCAAAAACGTC 58.685 36.000 0.00 0.00 0.00 4.34
2499 6938 6.149474 AGCTAACATATCTTGCAAAAACGTCT 59.851 34.615 0.00 0.00 0.00 4.18
2500 6939 6.801862 GCTAACATATCTTGCAAAAACGTCTT 59.198 34.615 0.00 0.00 0.00 3.01
2501 6940 7.960738 GCTAACATATCTTGCAAAAACGTCTTA 59.039 33.333 0.00 0.00 0.00 2.10
2502 6941 9.262472 CTAACATATCTTGCAAAAACGTCTTAC 57.738 33.333 0.00 0.00 0.00 2.34
2503 6942 7.197071 ACATATCTTGCAAAAACGTCTTACA 57.803 32.000 0.00 0.00 0.00 2.41
2504 6943 7.816640 ACATATCTTGCAAAAACGTCTTACAT 58.183 30.769 0.00 0.00 0.00 2.29
2505 6944 8.296713 ACATATCTTGCAAAAACGTCTTACATT 58.703 29.630 0.00 0.00 0.00 2.71
2506 6945 9.767684 CATATCTTGCAAAAACGTCTTACATTA 57.232 29.630 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.305922 CGCTCTTCATTTGGATCCGC 59.694 55.000 7.39 0.00 0.00 5.54
6 7 2.386661 ACGACGCTCTTCATTTGGAT 57.613 45.000 0.00 0.00 0.00 3.41
7 8 2.163818 AACGACGCTCTTCATTTGGA 57.836 45.000 0.00 0.00 0.00 3.53
9 10 4.278858 TCAAAAACGACGCTCTTCATTTG 58.721 39.130 0.00 0.00 0.00 2.32
10 11 4.272504 TCTCAAAAACGACGCTCTTCATTT 59.727 37.500 0.00 0.00 0.00 2.32
11 12 3.807622 TCTCAAAAACGACGCTCTTCATT 59.192 39.130 0.00 0.00 0.00 2.57
12 13 3.390135 TCTCAAAAACGACGCTCTTCAT 58.610 40.909 0.00 0.00 0.00 2.57
13 14 2.816689 TCTCAAAAACGACGCTCTTCA 58.183 42.857 0.00 0.00 0.00 3.02
14 15 4.391140 AATCTCAAAAACGACGCTCTTC 57.609 40.909 0.00 0.00 0.00 2.87
15 16 4.748102 TGTAATCTCAAAAACGACGCTCTT 59.252 37.500 0.00 0.00 0.00 2.85
16 17 4.304110 TGTAATCTCAAAAACGACGCTCT 58.696 39.130 0.00 0.00 0.00 4.09
17 18 4.640805 TGTAATCTCAAAAACGACGCTC 57.359 40.909 0.00 0.00 0.00 5.03
18 19 5.178623 TCATTGTAATCTCAAAAACGACGCT 59.821 36.000 0.00 0.00 0.00 5.07
19 20 5.280678 GTCATTGTAATCTCAAAAACGACGC 59.719 40.000 0.00 0.00 0.00 5.19
20 21 6.359545 TGTCATTGTAATCTCAAAAACGACG 58.640 36.000 0.00 0.00 0.00 5.12
21 22 6.303259 GCTGTCATTGTAATCTCAAAAACGAC 59.697 38.462 0.00 0.00 0.00 4.34
22 23 6.017523 TGCTGTCATTGTAATCTCAAAAACGA 60.018 34.615 0.00 0.00 0.00 3.85
23 24 6.142139 TGCTGTCATTGTAATCTCAAAAACG 58.858 36.000 0.00 0.00 0.00 3.60
24 25 7.362662 TCTGCTGTCATTGTAATCTCAAAAAC 58.637 34.615 0.00 0.00 0.00 2.43
25 26 7.509141 TCTGCTGTCATTGTAATCTCAAAAA 57.491 32.000 0.00 0.00 0.00 1.94
26 27 7.692460 ATCTGCTGTCATTGTAATCTCAAAA 57.308 32.000 0.00 0.00 0.00 2.44
27 28 7.010460 CGTATCTGCTGTCATTGTAATCTCAAA 59.990 37.037 0.00 0.00 0.00 2.69
28 29 6.476706 CGTATCTGCTGTCATTGTAATCTCAA 59.523 38.462 0.00 0.00 0.00 3.02
29 30 5.979517 CGTATCTGCTGTCATTGTAATCTCA 59.020 40.000 0.00 0.00 0.00 3.27
30 31 5.980116 ACGTATCTGCTGTCATTGTAATCTC 59.020 40.000 0.00 0.00 0.00 2.75
31 32 5.750547 CACGTATCTGCTGTCATTGTAATCT 59.249 40.000 0.00 0.00 0.00 2.40
32 33 5.520288 ACACGTATCTGCTGTCATTGTAATC 59.480 40.000 0.00 0.00 0.00 1.75
33 34 5.291858 CACACGTATCTGCTGTCATTGTAAT 59.708 40.000 0.00 0.00 0.00 1.89
34 35 4.625311 CACACGTATCTGCTGTCATTGTAA 59.375 41.667 0.00 0.00 0.00 2.41
35 36 4.173256 CACACGTATCTGCTGTCATTGTA 58.827 43.478 0.00 0.00 0.00 2.41
36 37 2.995939 CACACGTATCTGCTGTCATTGT 59.004 45.455 0.00 0.00 0.00 2.71
37 38 2.222886 GCACACGTATCTGCTGTCATTG 60.223 50.000 5.10 0.00 0.00 2.82
38 39 2.002586 GCACACGTATCTGCTGTCATT 58.997 47.619 5.10 0.00 0.00 2.57
39 40 1.205655 AGCACACGTATCTGCTGTCAT 59.794 47.619 12.41 0.00 42.29 3.06
40 41 0.603065 AGCACACGTATCTGCTGTCA 59.397 50.000 12.41 0.00 42.29 3.58
41 42 1.272781 GAGCACACGTATCTGCTGTC 58.727 55.000 16.79 3.30 43.94 3.51
42 43 0.603065 TGAGCACACGTATCTGCTGT 59.397 50.000 16.79 0.00 43.94 4.40
43 44 1.591619 CATGAGCACACGTATCTGCTG 59.408 52.381 16.79 3.25 43.94 4.41
44 45 1.205655 ACATGAGCACACGTATCTGCT 59.794 47.619 12.91 12.91 46.63 4.24
45 46 1.645034 ACATGAGCACACGTATCTGC 58.355 50.000 0.00 4.30 0.00 4.26
46 47 3.433274 ACAAACATGAGCACACGTATCTG 59.567 43.478 0.00 0.00 0.00 2.90
47 48 3.664107 ACAAACATGAGCACACGTATCT 58.336 40.909 0.00 0.00 0.00 1.98
48 49 4.404507 AACAAACATGAGCACACGTATC 57.595 40.909 0.00 0.00 0.00 2.24
49 50 4.829064 AAACAAACATGAGCACACGTAT 57.171 36.364 0.00 0.00 0.00 3.06
50 51 4.624336 AAAACAAACATGAGCACACGTA 57.376 36.364 0.00 0.00 0.00 3.57
51 52 3.502191 AAAACAAACATGAGCACACGT 57.498 38.095 0.00 0.00 0.00 4.49
52 53 4.346970 TGTAAAACAAACATGAGCACACG 58.653 39.130 0.00 0.00 0.00 4.49
53 54 6.826893 AATGTAAAACAAACATGAGCACAC 57.173 33.333 0.00 0.00 37.62 3.82
54 55 7.840342 AAAATGTAAAACAAACATGAGCACA 57.160 28.000 0.00 0.00 37.62 4.57
73 74 7.518731 TCTCAAAAACGAAACCTCAAAAATG 57.481 32.000 0.00 0.00 0.00 2.32
80 81 3.253432 AGCCATCTCAAAAACGAAACCTC 59.747 43.478 0.00 0.00 0.00 3.85
132 137 4.703379 ATCAAGGCATCCCTAGAAGAAG 57.297 45.455 0.00 0.00 41.90 2.85
133 138 6.770286 ATAATCAAGGCATCCCTAGAAGAA 57.230 37.500 0.00 0.00 41.90 2.52
134 139 6.770286 AATAATCAAGGCATCCCTAGAAGA 57.230 37.500 0.00 0.00 41.90 2.87
171 199 8.134895 TGGAGAATCTCAAAAACACATTGTAAC 58.865 33.333 12.79 0.00 33.73 2.50
203 262 3.743017 GGCTTGGATGGGCTGGGA 61.743 66.667 0.00 0.00 0.00 4.37
226 289 0.177836 TCACCTCACGTGCCATATGG 59.822 55.000 18.07 18.07 42.69 2.74
229 292 0.817654 CTCTCACCTCACGTGCCATA 59.182 55.000 11.67 0.00 42.69 2.74
236 299 2.126307 CGTGCCTCTCACCTCACG 60.126 66.667 0.00 0.00 44.62 4.35
270 333 0.991355 AGGGTGTGGTGAGGGTTTGA 60.991 55.000 0.00 0.00 0.00 2.69
284 349 1.104630 GGTAAGAGACGGAGAGGGTG 58.895 60.000 0.00 0.00 0.00 4.61
285 350 0.702902 TGGTAAGAGACGGAGAGGGT 59.297 55.000 0.00 0.00 0.00 4.34
300 365 4.992511 GCGGCGTGGTTGGTGGTA 62.993 66.667 9.37 0.00 0.00 3.25
384 469 1.479757 GGCGTAGGGAGAAGAGAGGAT 60.480 57.143 0.00 0.00 0.00 3.24
771 5180 1.664017 CGATGGATCTGCAGCGGAG 60.664 63.158 9.47 0.00 0.00 4.63
794 5203 4.521536 AGCCAGGTAGTACTGTAGATCA 57.478 45.455 5.39 0.00 36.75 2.92
813 5222 1.510480 GCCATGCACCCGAAGATAGC 61.510 60.000 0.00 0.00 0.00 2.97
816 5225 1.153086 GAGCCATGCACCCGAAGAT 60.153 57.895 0.00 0.00 0.00 2.40
873 5290 0.687354 GCTTGACCACCCTCTCAAGA 59.313 55.000 10.82 0.00 44.22 3.02
960 5377 3.200825 GGTTGATTCTGAGGATCCTTGGA 59.799 47.826 17.42 14.09 0.00 3.53
1249 5666 1.067416 GCCGATGAGCGATGTACCA 59.933 57.895 0.00 0.00 44.57 3.25
1356 5773 2.308690 GCAGAATAGTAGTCCCGGTCT 58.691 52.381 0.00 0.56 0.00 3.85
1611 6043 1.344114 GATGCCCTGATCTCTCACTCC 59.656 57.143 0.00 0.00 0.00 3.85
1681 6115 4.567959 GCAATGGCCATTTCAGAACATAAC 59.432 41.667 28.68 0.00 0.00 1.89
1707 6141 6.716628 AGATAGGTTGAAGATTGCACTGAAAA 59.283 34.615 0.00 0.00 0.00 2.29
1737 6172 4.248058 CCAAAATGGGAGCATTCTTTCAC 58.752 43.478 0.00 0.00 32.67 3.18
1748 6183 2.459644 TCTTCATGGCCAAAATGGGAG 58.540 47.619 10.96 6.18 38.19 4.30
1790 6225 7.547370 AGAAGTCCACGATTTTCATCTAAAGAG 59.453 37.037 0.00 0.00 0.00 2.85
1791 6226 7.386851 AGAAGTCCACGATTTTCATCTAAAGA 58.613 34.615 0.00 0.00 0.00 2.52
1837 6273 1.066573 CAACTGGCCAACAACAAACCA 60.067 47.619 7.01 0.00 0.00 3.67
1885 6321 4.727235 GGCACCTAAAATATCTACGCAC 57.273 45.455 0.00 0.00 0.00 5.34
1983 6420 5.768164 CAGGTTACCATAACATATGTTCCCC 59.232 44.000 24.00 13.53 39.31 4.81
2042 6481 9.486497 TGCTGAATTTTGTTAAATGCTTATCAA 57.514 25.926 0.00 0.00 34.27 2.57
2043 6482 9.656040 ATGCTGAATTTTGTTAAATGCTTATCA 57.344 25.926 0.00 0.00 34.27 2.15
2044 6483 9.910511 CATGCTGAATTTTGTTAAATGCTTATC 57.089 29.630 0.00 0.00 34.27 1.75
2045 6484 9.656040 TCATGCTGAATTTTGTTAAATGCTTAT 57.344 25.926 0.00 0.00 34.27 1.73
2046 6485 9.656040 ATCATGCTGAATTTTGTTAAATGCTTA 57.344 25.926 0.00 0.00 34.27 3.09
2047 6486 7.966246 TCATGCTGAATTTTGTTAAATGCTT 57.034 28.000 0.00 0.00 34.27 3.91
2048 6487 7.604927 ACATCATGCTGAATTTTGTTAAATGCT 59.395 29.630 3.02 0.00 34.27 3.79
2049 6488 7.690637 CACATCATGCTGAATTTTGTTAAATGC 59.309 33.333 3.02 0.00 34.27 3.56
2050 6489 8.172484 CCACATCATGCTGAATTTTGTTAAATG 58.828 33.333 3.02 0.00 34.27 2.32
2051 6490 7.879160 ACCACATCATGCTGAATTTTGTTAAAT 59.121 29.630 3.02 0.00 35.49 1.40
2052 6491 7.171167 CACCACATCATGCTGAATTTTGTTAAA 59.829 33.333 3.02 0.00 0.00 1.52
2053 6492 6.645827 CACCACATCATGCTGAATTTTGTTAA 59.354 34.615 3.02 0.00 0.00 2.01
2054 6493 6.157904 CACCACATCATGCTGAATTTTGTTA 58.842 36.000 3.02 0.00 0.00 2.41
2055 6494 4.992319 CACCACATCATGCTGAATTTTGTT 59.008 37.500 3.02 0.00 0.00 2.83
2056 6495 4.562082 CACCACATCATGCTGAATTTTGT 58.438 39.130 3.02 0.00 0.00 2.83
2057 6496 3.369756 GCACCACATCATGCTGAATTTTG 59.630 43.478 3.02 0.00 38.84 2.44
2058 6497 3.592059 GCACCACATCATGCTGAATTTT 58.408 40.909 3.02 0.00 38.84 1.82
2059 6498 3.241067 GCACCACATCATGCTGAATTT 57.759 42.857 3.02 0.00 38.84 1.82
2060 6499 2.953466 GCACCACATCATGCTGAATT 57.047 45.000 3.02 0.00 38.84 2.17
2066 6505 1.138883 CTGCAGCACCACATCATGC 59.861 57.895 0.00 0.00 42.39 4.06
2067 6506 1.138883 GCTGCAGCACCACATCATG 59.861 57.895 33.36 0.00 41.59 3.07
2068 6507 3.599584 GCTGCAGCACCACATCAT 58.400 55.556 33.36 0.00 41.59 2.45
2078 6517 1.538512 TCTTGATGAGTTTGCTGCAGC 59.461 47.619 31.89 31.89 42.50 5.25
2079 6518 3.909776 TTCTTGATGAGTTTGCTGCAG 57.090 42.857 10.11 10.11 0.00 4.41
2080 6519 4.859304 ATTTCTTGATGAGTTTGCTGCA 57.141 36.364 0.00 0.00 0.00 4.41
2081 6520 5.119743 GGAAATTTCTTGATGAGTTTGCTGC 59.880 40.000 17.42 0.00 0.00 5.25
2082 6521 6.453092 AGGAAATTTCTTGATGAGTTTGCTG 58.547 36.000 17.42 0.00 34.32 4.41
2083 6522 6.661304 AGGAAATTTCTTGATGAGTTTGCT 57.339 33.333 17.42 0.00 32.44 3.91
2084 6523 8.992835 ATTAGGAAATTTCTTGATGAGTTTGC 57.007 30.769 17.42 0.00 0.00 3.68
2113 6552 9.119418 TGTGTTCATGAAATCTCTGTTTCTTTA 57.881 29.630 10.35 0.00 38.58 1.85
2114 6553 7.917505 GTGTGTTCATGAAATCTCTGTTTCTTT 59.082 33.333 10.35 0.00 38.58 2.52
2115 6554 7.284034 AGTGTGTTCATGAAATCTCTGTTTCTT 59.716 33.333 10.35 0.00 38.58 2.52
2116 6555 6.769822 AGTGTGTTCATGAAATCTCTGTTTCT 59.230 34.615 10.35 0.00 38.58 2.52
2117 6556 6.854892 CAGTGTGTTCATGAAATCTCTGTTTC 59.145 38.462 21.76 6.69 38.32 2.78
2118 6557 6.732154 CAGTGTGTTCATGAAATCTCTGTTT 58.268 36.000 21.76 1.89 0.00 2.83
2119 6558 5.278169 GCAGTGTGTTCATGAAATCTCTGTT 60.278 40.000 25.89 6.26 0.00 3.16
2120 6559 4.214971 GCAGTGTGTTCATGAAATCTCTGT 59.785 41.667 25.89 6.61 0.00 3.41
2121 6560 4.379186 GGCAGTGTGTTCATGAAATCTCTG 60.379 45.833 23.71 23.71 0.00 3.35
2122 6561 3.755378 GGCAGTGTGTTCATGAAATCTCT 59.245 43.478 10.35 9.34 0.00 3.10
2123 6562 3.503363 TGGCAGTGTGTTCATGAAATCTC 59.497 43.478 10.35 7.30 0.00 2.75
2124 6563 3.489355 TGGCAGTGTGTTCATGAAATCT 58.511 40.909 10.35 3.66 0.00 2.40
2125 6564 3.921119 TGGCAGTGTGTTCATGAAATC 57.079 42.857 10.35 6.93 0.00 2.17
2126 6565 3.243839 GGTTGGCAGTGTGTTCATGAAAT 60.244 43.478 10.35 0.00 0.00 2.17
2127 6566 2.100584 GGTTGGCAGTGTGTTCATGAAA 59.899 45.455 10.35 0.00 0.00 2.69
2128 6567 1.680735 GGTTGGCAGTGTGTTCATGAA 59.319 47.619 3.38 3.38 0.00 2.57
2129 6568 1.317613 GGTTGGCAGTGTGTTCATGA 58.682 50.000 0.00 0.00 0.00 3.07
2130 6569 1.031235 TGGTTGGCAGTGTGTTCATG 58.969 50.000 0.00 0.00 0.00 3.07
2131 6570 1.682854 CTTGGTTGGCAGTGTGTTCAT 59.317 47.619 0.00 0.00 0.00 2.57
2132 6571 1.102154 CTTGGTTGGCAGTGTGTTCA 58.898 50.000 0.00 0.00 0.00 3.18
2133 6572 0.385390 CCTTGGTTGGCAGTGTGTTC 59.615 55.000 0.00 0.00 0.00 3.18
2134 6573 0.033601 TCCTTGGTTGGCAGTGTGTT 60.034 50.000 0.00 0.00 0.00 3.32
2135 6574 0.185901 ATCCTTGGTTGGCAGTGTGT 59.814 50.000 0.00 0.00 0.00 3.72
2136 6575 0.599558 CATCCTTGGTTGGCAGTGTG 59.400 55.000 0.00 0.00 0.00 3.82
2137 6576 0.478072 TCATCCTTGGTTGGCAGTGT 59.522 50.000 0.00 0.00 0.00 3.55
2138 6577 1.270550 GTTCATCCTTGGTTGGCAGTG 59.729 52.381 0.00 0.00 0.00 3.66
2139 6578 1.620822 GTTCATCCTTGGTTGGCAGT 58.379 50.000 0.00 0.00 0.00 4.40
2140 6579 0.890683 GGTTCATCCTTGGTTGGCAG 59.109 55.000 0.00 0.00 0.00 4.85
2141 6580 0.187117 TGGTTCATCCTTGGTTGGCA 59.813 50.000 0.00 0.00 37.07 4.92
2142 6581 1.337118 TTGGTTCATCCTTGGTTGGC 58.663 50.000 0.00 0.00 37.07 4.52
2143 6582 3.164268 TCATTGGTTCATCCTTGGTTGG 58.836 45.455 0.00 0.00 37.07 3.77
2144 6583 3.367703 GCTCATTGGTTCATCCTTGGTTG 60.368 47.826 0.00 0.00 37.07 3.77
2145 6584 2.827921 GCTCATTGGTTCATCCTTGGTT 59.172 45.455 0.00 0.00 37.07 3.67
2146 6585 2.225091 TGCTCATTGGTTCATCCTTGGT 60.225 45.455 0.00 0.00 37.07 3.67
2147 6586 2.449464 TGCTCATTGGTTCATCCTTGG 58.551 47.619 0.00 0.00 37.07 3.61
2148 6587 3.675228 GCTTGCTCATTGGTTCATCCTTG 60.675 47.826 0.00 0.00 37.07 3.61
2149 6588 2.494870 GCTTGCTCATTGGTTCATCCTT 59.505 45.455 0.00 0.00 37.07 3.36
2150 6589 2.097825 GCTTGCTCATTGGTTCATCCT 58.902 47.619 0.00 0.00 37.07 3.24
2151 6590 2.097825 AGCTTGCTCATTGGTTCATCC 58.902 47.619 0.00 0.00 0.00 3.51
2152 6591 4.156556 TGTTAGCTTGCTCATTGGTTCATC 59.843 41.667 0.00 0.00 0.00 2.92
2153 6592 4.081406 TGTTAGCTTGCTCATTGGTTCAT 58.919 39.130 0.00 0.00 0.00 2.57
2154 6593 3.485394 TGTTAGCTTGCTCATTGGTTCA 58.515 40.909 0.00 0.00 0.00 3.18
2155 6594 4.503741 TTGTTAGCTTGCTCATTGGTTC 57.496 40.909 0.00 0.00 0.00 3.62
2156 6595 4.935352 TTTGTTAGCTTGCTCATTGGTT 57.065 36.364 0.00 0.00 0.00 3.67
2157 6596 5.232463 CAATTTGTTAGCTTGCTCATTGGT 58.768 37.500 0.00 0.00 0.00 3.67
2158 6597 4.092383 GCAATTTGTTAGCTTGCTCATTGG 59.908 41.667 0.00 0.00 41.52 3.16
2159 6598 4.687018 TGCAATTTGTTAGCTTGCTCATTG 59.313 37.500 5.93 4.96 44.29 2.82
2160 6599 4.885413 TGCAATTTGTTAGCTTGCTCATT 58.115 34.783 5.93 0.00 44.29 2.57
2161 6600 4.219070 TCTGCAATTTGTTAGCTTGCTCAT 59.781 37.500 5.93 0.00 44.29 2.90
2162 6601 3.569277 TCTGCAATTTGTTAGCTTGCTCA 59.431 39.130 5.93 0.00 44.29 4.26
2163 6602 3.916776 GTCTGCAATTTGTTAGCTTGCTC 59.083 43.478 5.93 0.00 44.29 4.26
2164 6603 3.571401 AGTCTGCAATTTGTTAGCTTGCT 59.429 39.130 5.93 0.00 44.29 3.91
2165 6604 3.905784 AGTCTGCAATTTGTTAGCTTGC 58.094 40.909 0.00 0.00 44.25 4.01
2166 6605 5.750067 ACAAAGTCTGCAATTTGTTAGCTTG 59.250 36.000 15.07 5.08 44.96 4.01
2167 6606 5.906073 ACAAAGTCTGCAATTTGTTAGCTT 58.094 33.333 15.07 3.54 44.96 3.74
2168 6607 5.520376 ACAAAGTCTGCAATTTGTTAGCT 57.480 34.783 15.07 0.00 44.96 3.32
2189 6628 1.346068 ACCTGCTCTTCTCTGTGGAAC 59.654 52.381 0.00 0.00 37.35 3.62
2190 6629 1.345741 CACCTGCTCTTCTCTGTGGAA 59.654 52.381 0.00 0.00 0.00 3.53
2191 6630 0.972134 CACCTGCTCTTCTCTGTGGA 59.028 55.000 0.00 0.00 0.00 4.02
2192 6631 0.673022 GCACCTGCTCTTCTCTGTGG 60.673 60.000 0.00 0.00 38.21 4.17
2193 6632 1.013005 CGCACCTGCTCTTCTCTGTG 61.013 60.000 0.00 0.00 39.32 3.66
2194 6633 1.291588 CGCACCTGCTCTTCTCTGT 59.708 57.895 0.00 0.00 39.32 3.41
2195 6634 0.528017 TACGCACCTGCTCTTCTCTG 59.472 55.000 0.00 0.00 39.32 3.35
2196 6635 1.203523 CTTACGCACCTGCTCTTCTCT 59.796 52.381 0.00 0.00 39.32 3.10
2197 6636 1.202582 TCTTACGCACCTGCTCTTCTC 59.797 52.381 0.00 0.00 39.32 2.87
2198 6637 1.257743 TCTTACGCACCTGCTCTTCT 58.742 50.000 0.00 0.00 39.32 2.85
2199 6638 2.080286 TTCTTACGCACCTGCTCTTC 57.920 50.000 0.00 0.00 39.32 2.87
2200 6639 2.770164 ATTCTTACGCACCTGCTCTT 57.230 45.000 0.00 0.00 39.32 2.85
2201 6640 2.496070 TGTATTCTTACGCACCTGCTCT 59.504 45.455 0.00 0.00 39.32 4.09
2202 6641 2.888594 TGTATTCTTACGCACCTGCTC 58.111 47.619 0.00 0.00 39.32 4.26
2203 6642 3.543680 ATGTATTCTTACGCACCTGCT 57.456 42.857 0.00 0.00 39.32 4.24
2204 6643 5.728351 TTTATGTATTCTTACGCACCTGC 57.272 39.130 0.00 0.00 37.78 4.85
2205 6644 7.438160 TCAGATTTATGTATTCTTACGCACCTG 59.562 37.037 0.00 0.00 0.00 4.00
2206 6645 7.497595 TCAGATTTATGTATTCTTACGCACCT 58.502 34.615 0.00 0.00 0.00 4.00
2207 6646 7.709269 TCAGATTTATGTATTCTTACGCACC 57.291 36.000 0.00 0.00 0.00 5.01
2208 6647 8.818057 AGTTCAGATTTATGTATTCTTACGCAC 58.182 33.333 0.00 0.00 0.00 5.34
2209 6648 8.942338 AGTTCAGATTTATGTATTCTTACGCA 57.058 30.769 0.00 0.00 0.00 5.24
2210 6649 9.851043 GAAGTTCAGATTTATGTATTCTTACGC 57.149 33.333 0.00 0.00 0.00 4.42
2269 6708 9.442047 TCAAACTGGAATGTTATTTGTGTTTTT 57.558 25.926 0.00 0.00 33.10 1.94
2270 6709 9.612066 ATCAAACTGGAATGTTATTTGTGTTTT 57.388 25.926 0.00 0.00 33.10 2.43
2271 6710 9.260002 GATCAAACTGGAATGTTATTTGTGTTT 57.740 29.630 0.00 0.00 33.10 2.83
2272 6711 7.872483 GGATCAAACTGGAATGTTATTTGTGTT 59.128 33.333 0.00 0.00 33.10 3.32
2273 6712 7.378181 GGATCAAACTGGAATGTTATTTGTGT 58.622 34.615 0.00 0.00 33.10 3.72
2274 6713 6.813152 GGGATCAAACTGGAATGTTATTTGTG 59.187 38.462 0.00 0.00 33.10 3.33
2275 6714 6.496565 TGGGATCAAACTGGAATGTTATTTGT 59.503 34.615 0.00 0.00 33.10 2.83
2276 6715 6.934056 TGGGATCAAACTGGAATGTTATTTG 58.066 36.000 0.00 0.00 0.00 2.32
2277 6716 7.738437 ATGGGATCAAACTGGAATGTTATTT 57.262 32.000 0.00 0.00 0.00 1.40
2278 6717 7.738437 AATGGGATCAAACTGGAATGTTATT 57.262 32.000 0.00 0.00 0.00 1.40
2279 6718 8.837099 TTAATGGGATCAAACTGGAATGTTAT 57.163 30.769 0.00 0.00 0.00 1.89
2280 6719 8.657387 TTTAATGGGATCAAACTGGAATGTTA 57.343 30.769 0.00 0.00 0.00 2.41
2281 6720 7.552050 TTTAATGGGATCAAACTGGAATGTT 57.448 32.000 0.00 0.00 0.00 2.71
2282 6721 7.738437 ATTTAATGGGATCAAACTGGAATGT 57.262 32.000 0.00 0.00 0.00 2.71
2283 6722 9.701098 CATATTTAATGGGATCAAACTGGAATG 57.299 33.333 0.00 0.00 0.00 2.67
2284 6723 9.659135 TCATATTTAATGGGATCAAACTGGAAT 57.341 29.630 0.00 0.00 0.00 3.01
2285 6724 9.135189 CTCATATTTAATGGGATCAAACTGGAA 57.865 33.333 0.00 0.00 0.00 3.53
2286 6725 7.231317 GCTCATATTTAATGGGATCAAACTGGA 59.769 37.037 0.00 0.00 0.00 3.86
2287 6726 7.232127 AGCTCATATTTAATGGGATCAAACTGG 59.768 37.037 0.00 0.00 0.00 4.00
2288 6727 8.080417 CAGCTCATATTTAATGGGATCAAACTG 58.920 37.037 0.00 0.00 0.00 3.16
2289 6728 7.781693 ACAGCTCATATTTAATGGGATCAAACT 59.218 33.333 0.00 0.00 0.00 2.66
2290 6729 7.945134 ACAGCTCATATTTAATGGGATCAAAC 58.055 34.615 0.00 0.00 0.00 2.93
2291 6730 9.639563 TTACAGCTCATATTTAATGGGATCAAA 57.360 29.630 0.00 0.00 0.00 2.69
2292 6731 9.288576 CTTACAGCTCATATTTAATGGGATCAA 57.711 33.333 0.00 0.00 0.00 2.57
2293 6732 8.439971 ACTTACAGCTCATATTTAATGGGATCA 58.560 33.333 0.00 0.00 0.00 2.92
2294 6733 8.854614 ACTTACAGCTCATATTTAATGGGATC 57.145 34.615 0.00 0.00 0.00 3.36
2296 6735 9.778741 CTTACTTACAGCTCATATTTAATGGGA 57.221 33.333 0.00 0.00 0.00 4.37
2297 6736 9.778741 TCTTACTTACAGCTCATATTTAATGGG 57.221 33.333 0.00 0.00 0.00 4.00
2302 6741 9.314321 GCAACTCTTACTTACAGCTCATATTTA 57.686 33.333 0.00 0.00 0.00 1.40
2303 6742 7.824289 TGCAACTCTTACTTACAGCTCATATTT 59.176 33.333 0.00 0.00 0.00 1.40
2304 6743 7.331026 TGCAACTCTTACTTACAGCTCATATT 58.669 34.615 0.00 0.00 0.00 1.28
2305 6744 6.878317 TGCAACTCTTACTTACAGCTCATAT 58.122 36.000 0.00 0.00 0.00 1.78
2306 6745 6.280855 TGCAACTCTTACTTACAGCTCATA 57.719 37.500 0.00 0.00 0.00 2.15
2307 6746 5.152623 TGCAACTCTTACTTACAGCTCAT 57.847 39.130 0.00 0.00 0.00 2.90
2308 6747 4.600692 TGCAACTCTTACTTACAGCTCA 57.399 40.909 0.00 0.00 0.00 4.26
2309 6748 5.171476 TGATGCAACTCTTACTTACAGCTC 58.829 41.667 0.00 0.00 0.00 4.09
2310 6749 5.152623 TGATGCAACTCTTACTTACAGCT 57.847 39.130 0.00 0.00 0.00 4.24
2311 6750 5.862924 TTGATGCAACTCTTACTTACAGC 57.137 39.130 0.00 0.00 0.00 4.40
2312 6751 7.171508 TGACTTTGATGCAACTCTTACTTACAG 59.828 37.037 0.00 0.00 0.00 2.74
2313 6752 6.989759 TGACTTTGATGCAACTCTTACTTACA 59.010 34.615 0.00 0.00 0.00 2.41
2314 6753 7.360438 CCTGACTTTGATGCAACTCTTACTTAC 60.360 40.741 0.00 0.00 0.00 2.34
2315 6754 6.650807 CCTGACTTTGATGCAACTCTTACTTA 59.349 38.462 0.00 0.00 0.00 2.24
2316 6755 5.471456 CCTGACTTTGATGCAACTCTTACTT 59.529 40.000 0.00 0.00 0.00 2.24
2317 6756 4.999950 CCTGACTTTGATGCAACTCTTACT 59.000 41.667 0.00 0.00 0.00 2.24
2318 6757 4.757149 ACCTGACTTTGATGCAACTCTTAC 59.243 41.667 0.00 0.00 0.00 2.34
2319 6758 4.973168 ACCTGACTTTGATGCAACTCTTA 58.027 39.130 0.00 0.00 0.00 2.10
2320 6759 3.817647 GACCTGACTTTGATGCAACTCTT 59.182 43.478 0.00 0.00 0.00 2.85
2321 6760 3.181451 TGACCTGACTTTGATGCAACTCT 60.181 43.478 0.00 0.00 0.00 3.24
2322 6761 3.058639 GTGACCTGACTTTGATGCAACTC 60.059 47.826 0.00 0.00 0.00 3.01
2323 6762 2.880890 GTGACCTGACTTTGATGCAACT 59.119 45.455 0.00 0.00 0.00 3.16
2324 6763 2.880890 AGTGACCTGACTTTGATGCAAC 59.119 45.455 0.00 0.00 0.00 4.17
2325 6764 3.141398 GAGTGACCTGACTTTGATGCAA 58.859 45.455 0.00 0.00 0.00 4.08
2326 6765 2.771089 GAGTGACCTGACTTTGATGCA 58.229 47.619 0.00 0.00 0.00 3.96
2327 6766 1.728971 CGAGTGACCTGACTTTGATGC 59.271 52.381 0.00 0.00 0.00 3.91
2328 6767 1.728971 GCGAGTGACCTGACTTTGATG 59.271 52.381 0.00 0.00 0.00 3.07
2329 6768 1.344438 TGCGAGTGACCTGACTTTGAT 59.656 47.619 0.00 0.00 0.00 2.57
2330 6769 0.750249 TGCGAGTGACCTGACTTTGA 59.250 50.000 0.00 0.00 0.00 2.69
2331 6770 1.581934 TTGCGAGTGACCTGACTTTG 58.418 50.000 0.00 0.00 0.00 2.77
2332 6771 2.325583 TTTGCGAGTGACCTGACTTT 57.674 45.000 0.00 0.00 0.00 2.66
2333 6772 2.325583 TTTTGCGAGTGACCTGACTT 57.674 45.000 0.00 0.00 0.00 3.01
2334 6773 2.325583 TTTTTGCGAGTGACCTGACT 57.674 45.000 0.00 0.00 0.00 3.41
2356 6795 2.052782 ACCTGCCACGTTCTCTTTTT 57.947 45.000 0.00 0.00 0.00 1.94
2357 6796 2.922740 TACCTGCCACGTTCTCTTTT 57.077 45.000 0.00 0.00 0.00 2.27
2358 6797 4.755266 ATATACCTGCCACGTTCTCTTT 57.245 40.909 0.00 0.00 0.00 2.52
2359 6798 4.755266 AATATACCTGCCACGTTCTCTT 57.245 40.909 0.00 0.00 0.00 2.85
2360 6799 6.420913 AATAATATACCTGCCACGTTCTCT 57.579 37.500 0.00 0.00 0.00 3.10
2361 6800 7.328737 CAGTAATAATATACCTGCCACGTTCTC 59.671 40.741 0.00 0.00 0.00 2.87
2362 6801 7.152645 CAGTAATAATATACCTGCCACGTTCT 58.847 38.462 0.00 0.00 0.00 3.01
2363 6802 6.367969 CCAGTAATAATATACCTGCCACGTTC 59.632 42.308 0.00 0.00 0.00 3.95
2364 6803 6.042322 TCCAGTAATAATATACCTGCCACGTT 59.958 38.462 0.00 0.00 0.00 3.99
2365 6804 5.541101 TCCAGTAATAATATACCTGCCACGT 59.459 40.000 0.00 0.00 0.00 4.49
2366 6805 6.032956 TCCAGTAATAATATACCTGCCACG 57.967 41.667 0.00 0.00 0.00 4.94
2367 6806 8.863872 ATTTCCAGTAATAATATACCTGCCAC 57.136 34.615 0.00 0.00 0.00 5.01
2368 6807 9.295825 CAATTTCCAGTAATAATATACCTGCCA 57.704 33.333 0.00 0.00 0.00 4.92
2369 6808 9.515226 TCAATTTCCAGTAATAATATACCTGCC 57.485 33.333 0.00 0.00 0.00 4.85
2392 6831 8.191446 GCACATGTCTCTAAACTATCTAGTCAA 58.809 37.037 0.00 0.00 34.99 3.18
2393 6832 7.339466 TGCACATGTCTCTAAACTATCTAGTCA 59.661 37.037 0.00 0.00 34.99 3.41
2394 6833 7.708051 TGCACATGTCTCTAAACTATCTAGTC 58.292 38.462 0.00 0.00 34.99 2.59
2395 6834 7.646548 TGCACATGTCTCTAAACTATCTAGT 57.353 36.000 0.00 0.00 38.39 2.57
2396 6835 8.812329 GTTTGCACATGTCTCTAAACTATCTAG 58.188 37.037 0.00 0.00 0.00 2.43
2397 6836 8.531982 AGTTTGCACATGTCTCTAAACTATCTA 58.468 33.333 17.67 0.00 36.81 1.98
2398 6837 7.390027 AGTTTGCACATGTCTCTAAACTATCT 58.610 34.615 17.67 2.94 36.81 1.98
2399 6838 7.602517 AGTTTGCACATGTCTCTAAACTATC 57.397 36.000 17.67 0.71 36.81 2.08
2400 6839 9.102757 CATAGTTTGCACATGTCTCTAAACTAT 57.897 33.333 23.76 23.76 45.11 2.12
2401 6840 7.549134 CCATAGTTTGCACATGTCTCTAAACTA 59.451 37.037 22.38 22.38 41.77 2.24
2402 6841 6.372659 CCATAGTTTGCACATGTCTCTAAACT 59.627 38.462 20.61 20.61 40.32 2.66
2403 6842 6.546395 CCATAGTTTGCACATGTCTCTAAAC 58.454 40.000 0.00 5.61 0.00 2.01
2404 6843 5.123820 GCCATAGTTTGCACATGTCTCTAAA 59.876 40.000 0.00 0.00 0.00 1.85
2405 6844 4.635765 GCCATAGTTTGCACATGTCTCTAA 59.364 41.667 0.00 0.00 0.00 2.10
2406 6845 4.191544 GCCATAGTTTGCACATGTCTCTA 58.808 43.478 0.00 0.00 0.00 2.43
2407 6846 3.012518 GCCATAGTTTGCACATGTCTCT 58.987 45.455 0.00 0.00 0.00 3.10
2408 6847 2.098117 GGCCATAGTTTGCACATGTCTC 59.902 50.000 0.00 0.00 0.00 3.36
2409 6848 2.094675 GGCCATAGTTTGCACATGTCT 58.905 47.619 0.00 0.00 0.00 3.41
2410 6849 1.818060 TGGCCATAGTTTGCACATGTC 59.182 47.619 0.00 0.00 0.00 3.06
2411 6850 1.921982 TGGCCATAGTTTGCACATGT 58.078 45.000 0.00 0.00 0.00 3.21
2412 6851 4.278919 TGATATGGCCATAGTTTGCACATG 59.721 41.667 28.58 0.00 0.00 3.21
2413 6852 4.472496 TGATATGGCCATAGTTTGCACAT 58.528 39.130 28.58 11.32 0.00 3.21
2414 6853 3.895998 TGATATGGCCATAGTTTGCACA 58.104 40.909 28.58 16.16 0.00 4.57
2415 6854 4.916983 TTGATATGGCCATAGTTTGCAC 57.083 40.909 28.58 14.18 0.00 4.57
2416 6855 4.708909 TGTTTGATATGGCCATAGTTTGCA 59.291 37.500 28.58 20.48 0.00 4.08
2417 6856 5.043248 GTGTTTGATATGGCCATAGTTTGC 58.957 41.667 28.58 18.47 0.00 3.68
2418 6857 6.455360 AGTGTTTGATATGGCCATAGTTTG 57.545 37.500 28.58 0.00 0.00 2.93
2419 6858 5.594317 GGAGTGTTTGATATGGCCATAGTTT 59.406 40.000 28.58 14.00 0.00 2.66
2420 6859 5.133221 GGAGTGTTTGATATGGCCATAGTT 58.867 41.667 28.58 14.75 0.00 2.24
2421 6860 4.446311 GGGAGTGTTTGATATGGCCATAGT 60.446 45.833 28.58 17.35 0.00 2.12
2422 6861 4.074970 GGGAGTGTTTGATATGGCCATAG 58.925 47.826 28.58 0.00 0.00 2.23
2423 6862 3.721575 AGGGAGTGTTTGATATGGCCATA 59.278 43.478 27.36 27.36 0.00 2.74
2424 6863 2.515429 AGGGAGTGTTTGATATGGCCAT 59.485 45.455 24.45 24.45 0.00 4.40
2425 6864 1.922447 AGGGAGTGTTTGATATGGCCA 59.078 47.619 8.56 8.56 0.00 5.36
2426 6865 2.576615 GAGGGAGTGTTTGATATGGCC 58.423 52.381 0.00 0.00 0.00 5.36
2427 6866 2.092429 TGGAGGGAGTGTTTGATATGGC 60.092 50.000 0.00 0.00 0.00 4.40
2428 6867 3.931907 TGGAGGGAGTGTTTGATATGG 57.068 47.619 0.00 0.00 0.00 2.74
2429 6868 4.392940 GGATGGAGGGAGTGTTTGATATG 58.607 47.826 0.00 0.00 0.00 1.78
2430 6869 3.395941 GGGATGGAGGGAGTGTTTGATAT 59.604 47.826 0.00 0.00 0.00 1.63
2431 6870 2.777692 GGGATGGAGGGAGTGTTTGATA 59.222 50.000 0.00 0.00 0.00 2.15
2432 6871 1.566231 GGGATGGAGGGAGTGTTTGAT 59.434 52.381 0.00 0.00 0.00 2.57
2433 6872 0.991920 GGGATGGAGGGAGTGTTTGA 59.008 55.000 0.00 0.00 0.00 2.69
2434 6873 0.698238 TGGGATGGAGGGAGTGTTTG 59.302 55.000 0.00 0.00 0.00 2.93
2435 6874 1.686236 ATGGGATGGAGGGAGTGTTT 58.314 50.000 0.00 0.00 0.00 2.83
2436 6875 2.587060 TATGGGATGGAGGGAGTGTT 57.413 50.000 0.00 0.00 0.00 3.32
2437 6876 2.587060 TTATGGGATGGAGGGAGTGT 57.413 50.000 0.00 0.00 0.00 3.55
2438 6877 2.713167 ACATTATGGGATGGAGGGAGTG 59.287 50.000 0.00 0.00 0.00 3.51
2439 6878 3.080660 ACATTATGGGATGGAGGGAGT 57.919 47.619 0.00 0.00 0.00 3.85
2440 6879 4.846367 TCTTACATTATGGGATGGAGGGAG 59.154 45.833 0.00 0.00 0.00 4.30
2441 6880 4.597507 GTCTTACATTATGGGATGGAGGGA 59.402 45.833 0.00 0.00 0.00 4.20
2442 6881 4.563580 CGTCTTACATTATGGGATGGAGGG 60.564 50.000 0.00 0.00 0.00 4.30
2443 6882 4.040461 ACGTCTTACATTATGGGATGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
2444 6883 5.215252 ACGTCTTACATTATGGGATGGAG 57.785 43.478 0.00 0.00 0.00 3.86
2445 6884 5.623956 AACGTCTTACATTATGGGATGGA 57.376 39.130 0.00 0.00 0.00 3.41
2446 6885 6.511121 CGAAAACGTCTTACATTATGGGATGG 60.511 42.308 0.00 0.00 0.00 3.51
2447 6886 6.418956 CGAAAACGTCTTACATTATGGGATG 58.581 40.000 0.00 0.74 0.00 3.51
2448 6887 5.007332 GCGAAAACGTCTTACATTATGGGAT 59.993 40.000 0.00 0.00 0.00 3.85
2449 6888 4.330620 GCGAAAACGTCTTACATTATGGGA 59.669 41.667 0.00 0.00 0.00 4.37
2450 6889 4.093703 TGCGAAAACGTCTTACATTATGGG 59.906 41.667 0.00 0.00 0.00 4.00
2451 6890 5.211266 TGCGAAAACGTCTTACATTATGG 57.789 39.130 0.00 0.00 0.00 2.74
2452 6891 5.225129 GCTTGCGAAAACGTCTTACATTATG 59.775 40.000 0.00 0.00 0.00 1.90
2453 6892 5.121768 AGCTTGCGAAAACGTCTTACATTAT 59.878 36.000 0.00 0.00 0.00 1.28
2454 6893 4.449743 AGCTTGCGAAAACGTCTTACATTA 59.550 37.500 0.00 0.00 0.00 1.90
2455 6894 3.250040 AGCTTGCGAAAACGTCTTACATT 59.750 39.130 0.00 0.00 0.00 2.71
2456 6895 2.806244 AGCTTGCGAAAACGTCTTACAT 59.194 40.909 0.00 0.00 0.00 2.29
2457 6896 2.206750 AGCTTGCGAAAACGTCTTACA 58.793 42.857 0.00 0.00 0.00 2.41
2458 6897 2.943843 AGCTTGCGAAAACGTCTTAC 57.056 45.000 0.00 0.00 0.00 2.34
2459 6898 3.803231 TGTTAGCTTGCGAAAACGTCTTA 59.197 39.130 0.00 0.00 0.00 2.10
2460 6899 2.610374 TGTTAGCTTGCGAAAACGTCTT 59.390 40.909 0.00 0.00 0.00 3.01
2461 6900 2.206750 TGTTAGCTTGCGAAAACGTCT 58.793 42.857 0.00 0.00 0.00 4.18
2462 6901 2.656192 TGTTAGCTTGCGAAAACGTC 57.344 45.000 0.00 0.00 0.00 4.34
2463 6902 4.630069 AGATATGTTAGCTTGCGAAAACGT 59.370 37.500 0.00 0.00 0.00 3.99
2464 6903 5.143916 AGATATGTTAGCTTGCGAAAACG 57.856 39.130 0.00 0.00 0.00 3.60
2465 6904 6.780944 CAAGATATGTTAGCTTGCGAAAAC 57.219 37.500 0.00 0.00 43.99 2.43
2473 6912 6.677913 ACGTTTTTGCAAGATATGTTAGCTT 58.322 32.000 0.00 0.00 34.19 3.74
2474 6913 6.149474 AGACGTTTTTGCAAGATATGTTAGCT 59.851 34.615 0.00 0.00 0.00 3.32
2475 6914 6.314784 AGACGTTTTTGCAAGATATGTTAGC 58.685 36.000 0.00 0.00 0.00 3.09
2476 6915 9.262472 GTAAGACGTTTTTGCAAGATATGTTAG 57.738 33.333 0.00 0.00 0.00 2.34
2477 6916 8.775527 TGTAAGACGTTTTTGCAAGATATGTTA 58.224 29.630 0.00 0.00 0.00 2.41
2478 6917 7.644490 TGTAAGACGTTTTTGCAAGATATGTT 58.356 30.769 0.00 0.00 0.00 2.71
2479 6918 7.197071 TGTAAGACGTTTTTGCAAGATATGT 57.803 32.000 0.00 0.68 0.00 2.29
2480 6919 8.673626 AATGTAAGACGTTTTTGCAAGATATG 57.326 30.769 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.