AutoCloner

Multiple sequence alignment - TraesCS6A01G016800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G016800	chr6A	100.000	3158	0	0	1	3158	8213536	8210379	0.000000e+00	5832.0
1	TraesCS6A01G016800	chr6A	88.430	847	89	4	1350	2187	8393264	8392418	0.000000e+00	1013.0
2	TraesCS6A01G016800	chr6A	91.197	727	57	4	958	1684	8398700	8397981	0.000000e+00	981.0
3	TraesCS6A01G016800	chr6A	83.952	997	146	6	1177	2171	8401937	8400953	0.000000e+00	942.0
4	TraesCS6A01G016800	chr6A	83.957	1016	90	22	2188	3144	8394845	8393844	0.000000e+00	905.0
5	TraesCS6A01G016800	chr6A	79.800	1198	211	28	977	2163	10511170	10509993	0.000000e+00	843.0
6	TraesCS6A01G016800	chr6A	77.685	1201	243	20	988	2177	35581608	35580422	0.000000e+00	710.0
7	TraesCS6A01G016800	chr6A	90.039	512	51	0	1676	2187	8395393	8394882	0.000000e+00	664.0
8	TraesCS6A01G016800	chr6A	85.740	547	37	11	2188	2693	8392381	8391835	9.970000e-150	540.0
9	TraesCS6A01G016800	chr6A	85.545	505	70	3	1665	2167	8197804	8197301	2.790000e-145	525.0
10	TraesCS6A01G016800	chr6A	88.168	262	23	3	2796	3049	8391498	8391237	3.960000e-79	305.0
11	TraesCS6A01G016800	chr6A	85.000	240	22	8	2455	2683	8447611	8447375	6.810000e-57	231.0
12	TraesCS6A01G016800	chr6A	83.262	233	29	4	2758	2990	8447354	8447132	4.130000e-49	206.0
13	TraesCS6A01G016800	chr6A	82.533	229	34	6	2556	2781	12422247	12422472	2.480000e-46	196.0
14	TraesCS6A01G016800	chr6A	90.909	132	12	0	2177	2308	8448780	8448649	9.000000e-41	178.0
15	TraesCS6A01G016800	chr6A	82.407	216	26	9	2343	2550	35567908	35567697	9.000000e-41	178.0
16	TraesCS6A01G016800	chr6A	85.795	176	14	5	2990	3158	8438947	8438776	3.240000e-40	176.0
17	TraesCS6A01G016800	chr6B	95.015	1645	47	3	1545	3158	14629183	14627543	0.000000e+00	2551.0
18	TraesCS6A01G016800	chr6B	79.267	1119	199	21	1064	2167	14545316	14544216	0.000000e+00	750.0
19	TraesCS6A01G016800	chr6B	78.378	1184	231	22	987	2159	16428993	16430162	0.000000e+00	745.0
20	TraesCS6A01G016800	chr6B	93.737	479	30	0	965	1443	14629655	14629177	0.000000e+00	719.0
21	TraesCS6A01G016800	chr6B	76.762	1192	237	24	987	2161	16544002	16542834	5.750000e-177	630.0
22	TraesCS6A01G016800	chr6B	80.213	657	122	8	1526	2176	16339505	16340159	1.320000e-133	486.0
23	TraesCS6A01G016800	chr6B	81.739	230	32	6	2556	2782	65173440	65173218	1.930000e-42	183.0
24	TraesCS6A01G016800	chr6B	78.689	244	40	7	2308	2546	15218338	15218102	5.460000e-33	152.0
25	TraesCS6A01G016800	chr6D	94.197	1551	40	12	802	2308	7999297	7997753	0.000000e+00	2320.0
26	TraesCS6A01G016800	chr6D	94.024	753	18	4	2406	3158	7997747	7997022	0.000000e+00	1116.0
27	TraesCS6A01G016800	chr6D	93.952	711	35	3	107	817	8000051	7999349	0.000000e+00	1068.0
28	TraesCS6A01G016800	chr6D	79.534	1202	216	23	977	2163	9548234	9547048	0.000000e+00	830.0
29	TraesCS6A01G016800	chr6D	92.381	105	8	0	3	107	8000202	8000098	1.960000e-32	150.0
30	TraesCS6A01G016800	chr6D	77.232	224	42	6	2305	2525	8816994	8817211	4.280000e-24	122.0
31	TraesCS6A01G016800	chr6D	77.848	158	24	8	2375	2525	8970473	8970626	1.560000e-13	87.9
32	TraesCS6A01G016800	chr3A	78.969	1222	227	28	956	2162	45938017	45936811	0.000000e+00	806.0
33	TraesCS6A01G016800	chr2B	78.901	1237	213	39	961	2172	54044057	54042844	0.000000e+00	795.0
34	TraesCS6A01G016800	chr2B	78.947	190	28	9	2343	2525	709423263	709423079	5.530000e-23	119.0
35	TraesCS6A01G016800	chr7B	78.243	1195	235	22	973	2160	123655550	123656726	0.000000e+00	743.0
36	TraesCS6A01G016800	chr3D	77.977	1226	235	31	956	2162	33330539	33329330	0.000000e+00	736.0
37	TraesCS6A01G016800	chr1B	74.177	790	113	57	2305	3046	630650915	630651661	8.750000e-61	244.0
38	TraesCS6A01G016800	chr1B	84.211	133	13	4	2807	2933	27750827	27750697	4.280000e-24	122.0
39	TraesCS6A01G016800	chr1B	87.500	96	12	0	228	323	277425371	277425276	9.260000e-21	111.0
40	TraesCS6A01G016800	chr4A	80.973	226	35	5	2558	2779	667381910	667382131	4.190000e-39	172.0
41	TraesCS6A01G016800	chr4A	86.813	91	11	1	232	321	683883575	683883665	2.000000e-17	100.0
42	TraesCS6A01G016800	chr5D	79.186	221	32	8	2807	3018	524579452	524579667	1.180000e-29	141.0
43	TraesCS6A01G016800	chrUn	89.888	89	9	0	231	319	42479325	42479237	7.160000e-22	115.0
44	TraesCS6A01G016800	chr5B	89.888	89	9	0	231	319	484883370	484883282	7.160000e-22	115.0
45	TraesCS6A01G016800	chr2D	88.172	93	10	1	232	323	97219647	97219739	3.330000e-20	110.0
46	TraesCS6A01G016800	chr1A	88.172	93	10	1	229	320	474384745	474384837	3.330000e-20	110.0
47	TraesCS6A01G016800	chr4D	87.912	91	10	1	232	321	477107840	477107930	4.310000e-19	106.0
48	TraesCS6A01G016800	chr7D	88.372	86	10	0	231	316	83656298	83656213	1.550000e-18	104.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G016800	chr6A	8210379	8213536	3157	True	5832.000000	5832	100.000000	1	3158	1	chr6A.!!$R2	3157
1	TraesCS6A01G016800	chr6A	10509993	10511170	1177	True	843.000000	843	79.800000	977	2163	1	chr6A.!!$R4	1186
2	TraesCS6A01G016800	chr6A	8391237	8401937	10700	True	764.285714	1013	87.354714	958	3144	7	chr6A.!!$R7	2186
3	TraesCS6A01G016800	chr6A	35580422	35581608	1186	True	710.000000	710	77.685000	988	2177	1	chr6A.!!$R6	1189
4	TraesCS6A01G016800	chr6A	8197301	8197804	503	True	525.000000	525	85.545000	1665	2167	1	chr6A.!!$R1	502
5	TraesCS6A01G016800	chr6A	8447132	8448780	1648	True	205.000000	231	86.390333	2177	2990	3	chr6A.!!$R8	813
6	TraesCS6A01G016800	chr6B	14627543	14629655	2112	True	1635.000000	2551	94.376000	965	3158	2	chr6B.!!$R5	2193
7	TraesCS6A01G016800	chr6B	14544216	14545316	1100	True	750.000000	750	79.267000	1064	2167	1	chr6B.!!$R1	1103
8	TraesCS6A01G016800	chr6B	16428993	16430162	1169	False	745.000000	745	78.378000	987	2159	1	chr6B.!!$F2	1172
9	TraesCS6A01G016800	chr6B	16542834	16544002	1168	True	630.000000	630	76.762000	987	2161	1	chr6B.!!$R3	1174
10	TraesCS6A01G016800	chr6B	16339505	16340159	654	False	486.000000	486	80.213000	1526	2176	1	chr6B.!!$F1	650
11	TraesCS6A01G016800	chr6D	7997022	8000202	3180	True	1163.500000	2320	93.638500	3	3158	4	chr6D.!!$R2	3155
12	TraesCS6A01G016800	chr6D	9547048	9548234	1186	True	830.000000	830	79.534000	977	2163	1	chr6D.!!$R1	1186
13	TraesCS6A01G016800	chr3A	45936811	45938017	1206	True	806.000000	806	78.969000	956	2162	1	chr3A.!!$R1	1206
14	TraesCS6A01G016800	chr2B	54042844	54044057	1213	True	795.000000	795	78.901000	961	2172	1	chr2B.!!$R1	1211
15	TraesCS6A01G016800	chr7B	123655550	123656726	1176	False	743.000000	743	78.243000	973	2160	1	chr7B.!!$F1	1187
16	TraesCS6A01G016800	chr3D	33329330	33330539	1209	True	736.000000	736	77.977000	956	2162	1	chr3D.!!$R1	1206
17	TraesCS6A01G016800	chr1B	630650915	630651661	746	False	244.000000	244	74.177000	2305	3046	1	chr1B.!!$F1	741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
699	747	0.390472	GGAGGAGAGGAAGCGTGTTG	60.390	60.000	0.00	0.0	0.00	3.33	F
844	959	4.286808	TCCTTCATGATCCACTCTGTTTCA	59.713	41.667	0.00	0.0	0.00	2.69	F
1942	9959	2.678336	GCAATGGTCTGTTACAGCCTAC	59.322	50.000	20.37	9.8	32.01	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1713	9729	1.881973	GTGAAGGATGCAACAGCTTCA	59.118	47.619	10.28	10.28	34.97	3.02	R
1999	10016	3.112709	GCTCGGGTCGTGCTTGAC	61.113	66.667	7.04	0.86	42.00	3.18	R
3049	12265	2.227194	CAGTCCAAGTTTACACCCACC	58.773	52.381	0.00	0.00	0.00	4.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	4.970662	AGGATTTTCATCATGGTTGTCG	57.029	40.909	0.00	0.00	0.00	4.35
41	42	0.528470	GTTGTCGAGCCTAGCAGACT	59.472	55.000	13.57	0.00	38.53	3.24
81	82	3.896648	AACACCTTCAACAATGTAGCG	57.103	42.857	0.00	0.00	0.00	4.26
91	92	3.117434	ACAATGTAGCGACGCAAATTC	57.883	42.857	23.70	7.61	0.00	2.17
93	94	1.355971	ATGTAGCGACGCAAATTCGT	58.644	45.000	23.70	1.14	46.38	3.85
136	184	3.189495	CAGCATCTTGATGGCAGATCATC	59.811	47.826	11.91	0.00	42.72	2.92
204	252	0.748005	GCGACCATGGCCACTATGTT	60.748	55.000	8.16	0.00	0.00	2.71
217	265	4.450419	GCCACTATGTTAGCAGATAAGCTG	59.550	45.833	0.00	0.00	46.11	4.24
226	274	3.302375	AGATAAGCTGATGCGCCTG	57.698	52.632	4.18	0.00	45.42	4.85
258	306	5.715279	TCCCTCTGTCCCATAATATAAGACG	59.285	44.000	0.00	0.00	0.00	4.18
305	353	6.593382	TGCAAAAACATCTTATATTGTTGGGC	59.407	34.615	0.00	0.00	36.26	5.36
415	463	5.910614	AGTCTCCTTACTACAAACACGTTT	58.089	37.500	0.00	0.00	0.00	3.60
420	468	7.333921	TCTCCTTACTACAAACACGTTTTTCAA	59.666	33.333	0.00	0.00	0.00	2.69
454	502	6.401394	TCACATGTCAGAAATGAGTTCCTAG	58.599	40.000	7.66	0.00	36.86	3.02
455	503	5.583854	CACATGTCAGAAATGAGTTCCTAGG	59.416	44.000	7.66	0.82	36.86	3.02
496	544	1.864565	ATTTTTCAAGGGCAACACGC	58.135	45.000	0.00	0.00	41.28	5.34
556	604	5.425539	TCTTTTTCTAGAATCCGAGGGTCAT	59.574	40.000	5.89	0.00	0.00	3.06
557	605	5.693769	TTTTCTAGAATCCGAGGGTCATT	57.306	39.130	5.89	0.00	0.00	2.57
566	614	1.413077	CCGAGGGTCATTTAGTCTCCC	59.587	57.143	0.00	0.00	38.50	4.30
567	615	1.067212	CGAGGGTCATTTAGTCTCCCG	59.933	57.143	0.00	0.00	42.57	5.14
568	616	0.831307	AGGGTCATTTAGTCTCCCGC	59.169	55.000	0.00	0.00	42.57	6.13
604	652	5.343860	GCAAACGGACGCAACTTTATTATTT	59.656	36.000	0.00	0.00	0.00	1.40
634	682	8.979574	CGAAAGAATGATTATAGGTACAGGAAC	58.020	37.037	0.00	0.00	0.00	3.62
680	728	1.202417	ACATGACGACCGATGCCTAAG	60.202	52.381	0.00	0.00	0.00	2.18
699	747	0.390472	GGAGGAGAGGAAGCGTGTTG	60.390	60.000	0.00	0.00	0.00	3.33
780	828	9.474313	AATTTTGCCTATACTTAATGTCCTTCA	57.526	29.630	0.00	0.00	0.00	3.02
785	833	9.474313	TGCCTATACTTAATGTCCTTCATTTTT	57.526	29.630	0.00	0.00	43.33	1.94
843	958	4.836825	TCCTTCATGATCCACTCTGTTTC	58.163	43.478	0.00	0.00	0.00	2.78
844	959	4.286808	TCCTTCATGATCCACTCTGTTTCA	59.713	41.667	0.00	0.00	0.00	2.69
845	960	5.045359	TCCTTCATGATCCACTCTGTTTCAT	60.045	40.000	0.00	0.00	0.00	2.57
846	961	5.296283	CCTTCATGATCCACTCTGTTTCATC	59.704	44.000	0.00	0.00	0.00	2.92
847	962	5.425196	TCATGATCCACTCTGTTTCATCA	57.575	39.130	0.00	0.00	0.00	3.07
848	963	5.997843	TCATGATCCACTCTGTTTCATCAT	58.002	37.500	0.00	0.00	32.38	2.45
849	964	6.053650	TCATGATCCACTCTGTTTCATCATC	58.946	40.000	0.00	0.00	30.25	2.92
888	1004	6.711579	TGAAACAAATTCGTGTACAAGAGTC	58.288	36.000	11.35	3.71	41.18	3.36
1713	9729	2.806745	CGGGATGTTCAGGTATGCGATT	60.807	50.000	0.00	0.00	0.00	3.34
1942	9959	2.678336	GCAATGGTCTGTTACAGCCTAC	59.322	50.000	20.37	9.80	32.01	3.18
1999	10016	6.350629	AGTTTCTCAAGGAAAATGGATTGG	57.649	37.500	0.00	0.00	44.34	3.16
2231	10290	8.200792	AGTGTTATTTGCCAAACTGAATGTTTA	58.799	29.630	0.00	0.00	46.11	2.01
2571	11531	5.416271	GTCATCCAGTTTTGACCTAGGTA	57.584	43.478	16.29	0.00	36.98	3.08
2577	11537	4.157840	CCAGTTTTGACCTAGGTATTTGGC	59.842	45.833	16.29	1.17	0.00	4.52
2595	11556	2.027745	TGGCTGCTTCCTCTAGTTCTTG	60.028	50.000	0.00	0.00	0.00	3.02
2611	11579	8.204836	TCTAGTTCTTGTAAGCTGAAACTCTTT	58.795	33.333	0.00	0.00	0.00	2.52
2844	12049	5.129634	TGAAAGTACTTGGCAGTTTCATGA	58.870	37.500	9.34	0.00	39.33	3.07
2999	12215	9.736023	GATTATTTTGACTAAAATTCGAGCCAT	57.264	29.630	3.66	0.00	42.33	4.40
3049	12265	3.119814	AGCTCTATGTATCCGCACATACG	60.120	47.826	0.00	0.00	39.77	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	4.848357	ACCATGATGAAAATCCTTCGTCT	58.152	39.130	0.00	0.00	35.90	4.18
15	16	2.477825	CTAGGCTCGACAACCATGATG	58.522	52.381	0.00	0.00	0.00	3.07
28	29	4.759782	TGTTTTATCAGTCTGCTAGGCTC	58.240	43.478	0.00	0.00	0.00	4.70
95	96	3.512680	CTGATTAGAACGGGTCAGACAC	58.487	50.000	2.17	0.00	40.30	3.67
97	98	2.094182	TGCTGATTAGAACGGGTCAGAC	60.094	50.000	5.49	0.00	40.30	3.51
136	184	6.792326	ACATGATTGCAAATGTGACTATCAG	58.208	36.000	14.49	3.47	35.71	2.90
139	187	7.198390	GCTAACATGATTGCAAATGTGACTAT	58.802	34.615	15.66	4.59	37.11	2.12
182	230	0.393077	ATAGTGGCCATGGTCGCTAC	59.607	55.000	35.60	18.39	44.11	3.58
204	252	1.606480	GGCGCATCAGCTTATCTGCTA	60.606	52.381	10.83	0.00	41.98	3.49
226	274	1.044611	GGGACAGAGGGAGTAGATGC	58.955	60.000	0.00	0.00	0.00	3.91
258	306	6.256757	TGCAAACTATGTTGGCTTACAAAAAC	59.743	34.615	10.60	0.00	41.58	2.43
305	353	9.489084	TTCTACATGAAATAAATACTCCATCCG	57.511	33.333	0.00	0.00	0.00	4.18
415	463	3.317711	ACATGTGATTTCGTGGCTTGAAA	59.682	39.130	0.00	7.08	39.45	2.69
420	468	2.079158	CTGACATGTGATTTCGTGGCT	58.921	47.619	1.15	0.00	33.84	4.75
530	578	6.123045	ACCCTCGGATTCTAGAAAAAGAAA	57.877	37.500	9.71	0.00	38.90	2.52
534	582	5.693769	ATGACCCTCGGATTCTAGAAAAA	57.306	39.130	9.71	0.00	0.00	1.94
546	594	1.413077	GGGAGACTAAATGACCCTCGG	59.587	57.143	0.00	0.00	37.75	4.63
547	595	1.067212	CGGGAGACTAAATGACCCTCG	59.933	57.143	0.00	0.00	38.51	4.63
577	625	1.782028	AAGTTGCGTCCGTTTGCCTC	61.782	55.000	0.00	0.00	0.00	4.70
586	634	7.225523	TCGTCTAAATAATAAAGTTGCGTCC	57.774	36.000	0.00	0.00	0.00	4.79
618	666	6.127793	ACGACTCAGTTCCTGTACCTATAAT	58.872	40.000	0.00	0.00	32.61	1.28
630	678	3.324117	GGGTTCTTTACGACTCAGTTCC	58.676	50.000	0.00	0.00	0.00	3.62
634	682	3.326747	CTTGGGGTTCTTTACGACTCAG	58.673	50.000	0.00	0.00	0.00	3.35
645	693	1.133199	TCATGTTTGGCTTGGGGTTCT	60.133	47.619	0.00	0.00	0.00	3.01
680	728	0.390472	CAACACGCTTCCTCTCCTCC	60.390	60.000	0.00	0.00	0.00	4.30
699	747	8.568794	ACATAGAAACTTTAACTTTGAAGGCTC	58.431	33.333	0.00	0.00	0.00	4.70
755	803	9.646522	ATGAAGGACATTAAGTATAGGCAAAAT	57.353	29.630	0.00	0.00	35.45	1.82
888	1004	2.116983	CTGGGATGGGATGGGCTACG	62.117	65.000	0.00	0.00	0.00	3.51
1713	9729	1.881973	GTGAAGGATGCAACAGCTTCA	59.118	47.619	10.28	10.28	34.97	3.02
1942	9959	3.866582	GGGTCTCATCCGGCCCTG	61.867	72.222	0.00	0.00	38.12	4.45
1999	10016	3.112709	GCTCGGGTCGTGCTTGAC	61.113	66.667	7.04	0.86	42.00	3.18
2532	11485	7.077050	TGGATGACCAAAGGAAAATTTTGAT	57.923	32.000	8.47	0.00	43.91	2.57
2569	11529	4.143986	ACTAGAGGAAGCAGCCAAATAC	57.856	45.455	0.00	0.00	0.00	1.89
2571	11531	3.265479	AGAACTAGAGGAAGCAGCCAAAT	59.735	43.478	0.00	0.00	0.00	2.32
2577	11537	4.867608	GCTTACAAGAACTAGAGGAAGCAG	59.132	45.833	0.00	0.00	38.31	4.24
2595	11556	6.261158	AGGAAGAACAAAGAGTTTCAGCTTAC	59.739	38.462	0.00	0.00	41.51	2.34
2611	11579	4.144297	ACAAAGCTATTGCAGGAAGAACA	58.856	39.130	1.12	0.00	42.74	3.18
2753	11751	3.316029	TCAATTTTGAGCTCATATGCCCG	59.684	43.478	19.04	3.61	32.50	6.13
2792	11790	4.333649	GCAACAGCTATCAATAACAGAGCA	59.666	41.667	0.00	0.00	35.55	4.26
2793	11998	4.574013	AGCAACAGCTATCAATAACAGAGC	59.426	41.667	0.00	0.00	36.70	4.09
2794	11999	5.583854	ACAGCAACAGCTATCAATAACAGAG	59.416	40.000	0.00	0.00	36.70	3.35
2844	12049	7.709149	AGCTAAGCCAAAACTCTGAAATAAT	57.291	32.000	0.00	0.00	0.00	1.28
2887	12092	5.424121	TTCTGTGCTTGAGAAAGCTTAAC	57.576	39.130	0.00	0.00	45.66	2.01
2897	12102	4.825422	TGACCTATCTTTCTGTGCTTGAG	58.175	43.478	0.00	0.00	0.00	3.02
2975	12181	9.352784	CAATGGCTCGAATTTTAGTCAAAATAA	57.647	29.630	0.14	0.00	42.29	1.40
2999	12215	2.564947	GTGTGGCATAAAATGGACCCAA	59.435	45.455	0.00	0.00	0.00	4.12
3049	12265	2.227194	CAGTCCAAGTTTACACCCACC	58.773	52.381	0.00	0.00	0.00	4.61
3050	12266	2.927028	ACAGTCCAAGTTTACACCCAC	58.073	47.619	0.00	0.00	0.00	4.61
3051	12267	3.283751	CAACAGTCCAAGTTTACACCCA	58.716	45.455	0.00	0.00	0.00	4.51
3052	12268	2.621526	CCAACAGTCCAAGTTTACACCC	59.378	50.000	0.00	0.00	0.00	4.61
3127	12344	2.928334	CCATCAGTGATCCTTGAAGGG	58.072	52.381	11.99	0.00	35.59	3.95

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.