Multiple sequence alignment - TraesCS6A01G016700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G016700 chr6A 100.000 3176 0 0 1 3176 8203340 8200165 0.000000e+00 5866.0
1 TraesCS6A01G016700 chr6A 90.691 1837 133 14 864 2686 7986643 7988455 0.000000e+00 2410.0
2 TraesCS6A01G016700 chr6A 99.110 337 3 0 1 337 86408708 86408372 9.740000e-170 606.0
3 TraesCS6A01G016700 chr6A 86.275 510 31 9 2679 3176 7988642 7989124 4.700000e-143 518.0
4 TraesCS6A01G016700 chr6D 91.637 2260 144 26 941 3176 7994337 7992099 0.000000e+00 3085.0
5 TraesCS6A01G016700 chr6D 91.224 1960 138 22 1194 3131 7715858 7717805 0.000000e+00 2636.0
6 TraesCS6A01G016700 chr6B 89.084 2336 168 33 864 3176 14622864 14620593 0.000000e+00 2820.0
7 TraesCS6A01G016700 chr6B 84.840 2256 210 60 953 3143 14330391 14332579 0.000000e+00 2150.0
8 TraesCS6A01G016700 chr6B 90.050 794 46 15 2402 3176 14548787 14548008 0.000000e+00 998.0
9 TraesCS6A01G016700 chr6B 98.806 335 4 0 1 335 416917875 416917541 5.860000e-167 597.0
10 TraesCS6A01G016700 chr6B 98.209 335 5 1 1 335 45204459 45204792 4.570000e-163 584.0
11 TraesCS6A01G016700 chr1B 88.161 1740 169 16 1092 2808 27752870 27751145 0.000000e+00 2037.0
12 TraesCS6A01G016700 chr1B 84.722 1957 207 50 885 2783 27678244 27676322 0.000000e+00 1873.0
13 TraesCS6A01G016700 chr1B 98.806 335 3 1 2 336 666866288 666865955 2.110000e-166 595.0
14 TraesCS6A01G016700 chr1B 82.372 312 23 12 2840 3143 27751145 27750858 3.170000e-60 243.0
15 TraesCS6A01G016700 chr1B 91.765 170 8 3 2978 3143 27675986 27675819 6.850000e-57 231.0
16 TraesCS6A01G016700 chr1B 98.039 51 1 0 2905 2955 27676035 27675985 4.360000e-14 89.8
17 TraesCS6A01G016700 chr5A 87.131 1593 173 19 953 2537 650824506 650826074 0.000000e+00 1777.0
18 TraesCS6A01G016700 chr5D 85.681 1704 194 26 859 2537 524577371 524579049 0.000000e+00 1749.0
19 TraesCS6A01G016700 chr5D 88.859 377 33 4 2715 3083 524579050 524579425 3.730000e-124 455.0
20 TraesCS6A01G016700 chr3A 98.246 456 8 0 400 855 580560165 580560620 0.000000e+00 798.0
21 TraesCS6A01G016700 chr3A 97.807 456 9 1 401 855 431863713 431863258 0.000000e+00 785.0
22 TraesCS6A01G016700 chr3A 97.582 455 10 1 401 855 566345509 566345056 0.000000e+00 778.0
23 TraesCS6A01G016700 chr3A 98.214 336 6 0 1 336 16689216 16689551 3.530000e-164 588.0
24 TraesCS6A01G016700 chr2B 97.812 457 10 0 399 855 676742971 676743427 0.000000e+00 789.0
25 TraesCS6A01G016700 chr2B 79.234 1045 197 15 1093 2130 711161489 711162520 0.000000e+00 710.0
26 TraesCS6A01G016700 chr2B 98.225 338 6 0 1 338 180062081 180061744 2.730000e-165 592.0
27 TraesCS6A01G016700 chr2A 97.802 455 10 0 401 855 25351046 25350592 0.000000e+00 785.0
28 TraesCS6A01G016700 chr5B 97.802 455 9 1 401 854 72093166 72093620 0.000000e+00 784.0
29 TraesCS6A01G016700 chr5B 97.582 455 10 1 399 853 700230715 700230262 0.000000e+00 778.0
30 TraesCS6A01G016700 chr3B 97.391 460 10 2 400 858 222147443 222146985 0.000000e+00 782.0
31 TraesCS6A01G016700 chr3B 98.507 335 5 0 1 335 711634801 711634467 2.730000e-165 592.0
32 TraesCS6A01G016700 chr3B 76.327 1149 247 20 1116 2254 761047642 761046509 2.730000e-165 592.0
33 TraesCS6A01G016700 chr4A 97.380 458 11 1 399 855 674355890 674355433 0.000000e+00 778.0
34 TraesCS6A01G016700 chr1A 98.555 346 2 3 1 346 574387990 574387648 2.710000e-170 608.0
35 TraesCS6A01G016700 chr7B 98.220 337 5 1 1 337 424555329 424554994 3.530000e-164 588.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G016700 chr6A 8200165 8203340 3175 True 5866.000000 5866 100.000000 1 3176 1 chr6A.!!$R1 3175
1 TraesCS6A01G016700 chr6A 7986643 7989124 2481 False 1464.000000 2410 88.483000 864 3176 2 chr6A.!!$F1 2312
2 TraesCS6A01G016700 chr6D 7992099 7994337 2238 True 3085.000000 3085 91.637000 941 3176 1 chr6D.!!$R1 2235
3 TraesCS6A01G016700 chr6D 7715858 7717805 1947 False 2636.000000 2636 91.224000 1194 3131 1 chr6D.!!$F1 1937
4 TraesCS6A01G016700 chr6B 14620593 14622864 2271 True 2820.000000 2820 89.084000 864 3176 1 chr6B.!!$R2 2312
5 TraesCS6A01G016700 chr6B 14330391 14332579 2188 False 2150.000000 2150 84.840000 953 3143 1 chr6B.!!$F1 2190
6 TraesCS6A01G016700 chr6B 14548008 14548787 779 True 998.000000 998 90.050000 2402 3176 1 chr6B.!!$R1 774
7 TraesCS6A01G016700 chr1B 27750858 27752870 2012 True 1140.000000 2037 85.266500 1092 3143 2 chr1B.!!$R3 2051
8 TraesCS6A01G016700 chr1B 27675819 27678244 2425 True 731.266667 1873 91.508667 885 3143 3 chr1B.!!$R2 2258
9 TraesCS6A01G016700 chr5A 650824506 650826074 1568 False 1777.000000 1777 87.131000 953 2537 1 chr5A.!!$F1 1584
10 TraesCS6A01G016700 chr5D 524577371 524579425 2054 False 1102.000000 1749 87.270000 859 3083 2 chr5D.!!$F1 2224
11 TraesCS6A01G016700 chr2B 711161489 711162520 1031 False 710.000000 710 79.234000 1093 2130 1 chr2B.!!$F2 1037
12 TraesCS6A01G016700 chr3B 761046509 761047642 1133 True 592.000000 592 76.327000 1116 2254 1 chr3B.!!$R3 1138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 288 0.032952 GGTTTCCTTTTTCGGGTGGC 59.967 55.0 0.0 0.0 0.0 5.01 F
288 289 0.032952 GTTTCCTTTTTCGGGTGGCC 59.967 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1489 0.038159 GTACTGCAGCTTGGAGACGT 60.038 55.0 15.27 0.0 38.14 4.34 R
2185 2230 5.163561 ACACAATTACCAATTTCCATAGCCG 60.164 40.0 0.00 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.049888 CCTGGGCAGATCCTTCTTTC 57.950 55.000 0.00 0.00 34.39 2.62
20 21 1.661341 CTGGGCAGATCCTTCTTTCG 58.339 55.000 0.00 0.00 34.39 3.46
21 22 0.984230 TGGGCAGATCCTTCTTTCGT 59.016 50.000 0.00 0.00 34.39 3.85
22 23 1.339055 TGGGCAGATCCTTCTTTCGTG 60.339 52.381 0.00 0.00 34.39 4.35
23 24 1.066143 GGGCAGATCCTTCTTTCGTGA 60.066 52.381 0.00 0.00 34.39 4.35
24 25 2.275318 GGCAGATCCTTCTTTCGTGAG 58.725 52.381 0.00 0.00 0.00 3.51
25 26 2.275318 GCAGATCCTTCTTTCGTGAGG 58.725 52.381 0.00 0.00 0.00 3.86
26 27 2.093973 GCAGATCCTTCTTTCGTGAGGA 60.094 50.000 0.00 0.00 0.00 3.71
27 28 3.617531 GCAGATCCTTCTTTCGTGAGGAA 60.618 47.826 0.00 0.00 31.92 3.36
39 40 4.640789 TCGTGAGGAAGAAGAAGATAGC 57.359 45.455 0.00 0.00 0.00 2.97
40 41 3.381908 TCGTGAGGAAGAAGAAGATAGCC 59.618 47.826 0.00 0.00 0.00 3.93
41 42 3.131223 CGTGAGGAAGAAGAAGATAGCCA 59.869 47.826 0.00 0.00 0.00 4.75
42 43 4.692228 GTGAGGAAGAAGAAGATAGCCAG 58.308 47.826 0.00 0.00 0.00 4.85
43 44 3.708631 TGAGGAAGAAGAAGATAGCCAGG 59.291 47.826 0.00 0.00 0.00 4.45
44 45 3.044894 AGGAAGAAGAAGATAGCCAGGG 58.955 50.000 0.00 0.00 0.00 4.45
45 46 2.486370 GGAAGAAGAAGATAGCCAGGGC 60.486 54.545 0.97 0.97 42.33 5.19
78 79 2.361104 GGCATGGTTTGGCGAGGA 60.361 61.111 0.00 0.00 41.53 3.71
79 80 2.409870 GGCATGGTTTGGCGAGGAG 61.410 63.158 0.00 0.00 41.53 3.69
80 81 2.409870 GCATGGTTTGGCGAGGAGG 61.410 63.158 0.00 0.00 0.00 4.30
81 82 1.750399 CATGGTTTGGCGAGGAGGG 60.750 63.158 0.00 0.00 0.00 4.30
82 83 2.231380 ATGGTTTGGCGAGGAGGGT 61.231 57.895 0.00 0.00 0.00 4.34
83 84 2.359975 GGTTTGGCGAGGAGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
84 85 3.056328 GTTTGGCGAGGAGGGTGC 61.056 66.667 0.00 0.00 0.00 5.01
85 86 3.565214 TTTGGCGAGGAGGGTGCA 61.565 61.111 0.00 0.00 0.00 4.57
86 87 3.842925 TTTGGCGAGGAGGGTGCAC 62.843 63.158 8.80 8.80 0.00 4.57
90 91 3.680786 CGAGGAGGGTGCACGTGA 61.681 66.667 22.23 1.04 0.00 4.35
91 92 2.982130 GAGGAGGGTGCACGTGAT 59.018 61.111 22.23 0.00 0.00 3.06
92 93 1.153549 GAGGAGGGTGCACGTGATC 60.154 63.158 22.23 10.80 0.00 2.92
93 94 2.125106 GGAGGGTGCACGTGATCC 60.125 66.667 22.23 19.22 0.00 3.36
94 95 2.125106 GAGGGTGCACGTGATCCC 60.125 66.667 29.12 29.12 40.16 3.85
95 96 4.082523 AGGGTGCACGTGATCCCG 62.083 66.667 29.42 0.00 44.13 5.14
104 105 3.917760 GTGATCCCGCGGCTAGCT 61.918 66.667 22.85 0.00 45.59 3.32
105 106 3.916544 TGATCCCGCGGCTAGCTG 61.917 66.667 22.85 19.74 45.59 4.24
131 132 4.966005 GGCAGTTCCCTTTTTCGC 57.034 55.556 0.00 0.00 0.00 4.70
132 133 2.341452 GGCAGTTCCCTTTTTCGCT 58.659 52.632 0.00 0.00 0.00 4.93
133 134 0.241213 GGCAGTTCCCTTTTTCGCTC 59.759 55.000 0.00 0.00 0.00 5.03
134 135 0.241213 GCAGTTCCCTTTTTCGCTCC 59.759 55.000 0.00 0.00 0.00 4.70
135 136 0.517316 CAGTTCCCTTTTTCGCTCCG 59.483 55.000 0.00 0.00 0.00 4.63
136 137 0.395312 AGTTCCCTTTTTCGCTCCGA 59.605 50.000 0.00 0.00 0.00 4.55
137 138 1.003233 AGTTCCCTTTTTCGCTCCGAT 59.997 47.619 0.00 0.00 35.23 4.18
138 139 1.130561 GTTCCCTTTTTCGCTCCGATG 59.869 52.381 0.00 0.00 35.23 3.84
139 140 0.392461 TCCCTTTTTCGCTCCGATGG 60.392 55.000 0.00 0.00 35.23 3.51
140 141 1.376609 CCCTTTTTCGCTCCGATGGG 61.377 60.000 0.00 0.00 35.23 4.00
141 142 1.429423 CTTTTTCGCTCCGATGGGC 59.571 57.895 0.00 0.00 35.23 5.36
162 163 2.961424 GGACCAGGTGGACCATTTG 58.039 57.895 12.07 0.00 46.96 2.32
163 164 0.611896 GGACCAGGTGGACCATTTGG 60.612 60.000 20.13 20.13 46.96 3.28
164 165 0.611896 GACCAGGTGGACCATTTGGG 60.612 60.000 23.60 14.52 39.98 4.12
165 166 1.984026 CCAGGTGGACCATTTGGGC 60.984 63.158 15.96 0.00 44.61 5.36
166 167 2.035626 AGGTGGACCATTTGGGCG 59.964 61.111 0.00 0.00 47.00 6.13
167 168 3.068064 GGTGGACCATTTGGGCGG 61.068 66.667 0.00 0.00 47.00 6.13
168 169 3.068064 GTGGACCATTTGGGCGGG 61.068 66.667 0.00 0.00 47.00 6.13
191 192 3.754068 GGCGGTTCCCTTTTTCGT 58.246 55.556 0.00 0.00 0.00 3.85
192 193 2.035421 GGCGGTTCCCTTTTTCGTT 58.965 52.632 0.00 0.00 0.00 3.85
193 194 0.039798 GGCGGTTCCCTTTTTCGTTC 60.040 55.000 0.00 0.00 0.00 3.95
194 195 0.385098 GCGGTTCCCTTTTTCGTTCG 60.385 55.000 0.00 0.00 0.00 3.95
195 196 0.236449 CGGTTCCCTTTTTCGTTCGG 59.764 55.000 0.00 0.00 0.00 4.30
196 197 0.594602 GGTTCCCTTTTTCGTTCGGG 59.405 55.000 0.00 0.00 38.07 5.14
197 198 0.039798 GTTCCCTTTTTCGTTCGGGC 60.040 55.000 0.00 0.00 36.61 6.13
198 199 1.508808 TTCCCTTTTTCGTTCGGGCG 61.509 55.000 0.00 0.00 36.61 6.13
199 200 2.559330 CCTTTTTCGTTCGGGCGG 59.441 61.111 0.29 0.00 0.00 6.13
200 201 2.559330 CTTTTTCGTTCGGGCGGG 59.441 61.111 0.00 0.00 0.00 6.13
201 202 3.604494 CTTTTTCGTTCGGGCGGGC 62.604 63.158 0.00 0.00 0.00 6.13
220 221 3.239253 GGACCAGGTGGACCACGT 61.239 66.667 18.40 16.27 46.96 4.49
221 222 2.030562 GACCAGGTGGACCACGTG 59.969 66.667 31.57 31.57 45.90 4.49
249 250 1.809684 GGGGACTGTTTCCTCTTTCG 58.190 55.000 2.09 0.00 42.62 3.46
250 251 1.157585 GGGACTGTTTCCTCTTTCGC 58.842 55.000 0.00 0.00 45.09 4.70
251 252 1.270893 GGGACTGTTTCCTCTTTCGCT 60.271 52.381 0.00 0.00 45.09 4.93
252 253 2.070028 GGACTGTTTCCTCTTTCGCTC 58.930 52.381 0.00 0.00 41.95 5.03
253 254 1.721926 GACTGTTTCCTCTTTCGCTCG 59.278 52.381 0.00 0.00 0.00 5.03
254 255 1.340248 ACTGTTTCCTCTTTCGCTCGA 59.660 47.619 0.00 0.00 0.00 4.04
255 256 1.989165 CTGTTTCCTCTTTCGCTCGAG 59.011 52.381 8.45 8.45 0.00 4.04
256 257 1.336887 TGTTTCCTCTTTCGCTCGAGG 60.337 52.381 15.58 4.50 46.52 4.63
257 258 0.246635 TTTCCTCTTTCGCTCGAGGG 59.753 55.000 22.60 22.60 45.46 4.30
258 259 1.605058 TTCCTCTTTCGCTCGAGGGG 61.605 60.000 27.01 12.96 45.46 4.79
259 260 2.496817 CTCTTTCGCTCGAGGGGG 59.503 66.667 27.01 17.52 0.00 5.40
281 282 2.793278 CCAGGTGGTTTCCTTTTTCG 57.207 50.000 0.00 0.00 35.37 3.46
282 283 1.339929 CCAGGTGGTTTCCTTTTTCGG 59.660 52.381 0.00 0.00 35.37 4.30
283 284 1.339929 CAGGTGGTTTCCTTTTTCGGG 59.660 52.381 0.00 0.00 35.37 5.14
284 285 1.063492 AGGTGGTTTCCTTTTTCGGGT 60.063 47.619 0.00 0.00 33.52 5.28
285 286 1.067974 GGTGGTTTCCTTTTTCGGGTG 59.932 52.381 0.00 0.00 0.00 4.61
286 287 1.067974 GTGGTTTCCTTTTTCGGGTGG 59.932 52.381 0.00 0.00 0.00 4.61
287 288 0.032952 GGTTTCCTTTTTCGGGTGGC 59.967 55.000 0.00 0.00 0.00 5.01
288 289 0.032952 GTTTCCTTTTTCGGGTGGCC 59.967 55.000 0.00 0.00 0.00 5.36
289 290 1.457009 TTTCCTTTTTCGGGTGGCCG 61.457 55.000 0.00 0.00 0.00 6.13
290 291 4.050934 CCTTTTTCGGGTGGCCGC 62.051 66.667 8.12 8.12 0.00 6.53
291 292 2.983592 CTTTTTCGGGTGGCCGCT 60.984 61.111 17.49 0.00 0.00 5.52
292 293 3.267597 CTTTTTCGGGTGGCCGCTG 62.268 63.158 17.49 9.53 0.00 5.18
306 307 2.505982 GCTGGCTAGCGATCCCAA 59.494 61.111 6.22 0.00 40.67 4.12
307 308 1.596477 GCTGGCTAGCGATCCCAAG 60.596 63.158 6.22 0.00 40.67 3.61
308 309 1.070445 CTGGCTAGCGATCCCAAGG 59.930 63.158 9.00 0.00 0.00 3.61
309 310 2.281139 GGCTAGCGATCCCAAGGC 60.281 66.667 9.00 0.00 0.00 4.35
310 311 2.663188 GCTAGCGATCCCAAGGCG 60.663 66.667 0.00 0.00 0.00 5.52
311 312 2.029666 CTAGCGATCCCAAGGCGG 59.970 66.667 0.00 0.00 0.00 6.13
312 313 4.235762 TAGCGATCCCAAGGCGGC 62.236 66.667 0.00 0.00 0.00 6.53
333 334 4.849329 CCGCCCACTAGACGCGTC 62.849 72.222 31.30 31.30 44.29 5.19
334 335 4.849329 CGCCCACTAGACGCGTCC 62.849 72.222 34.08 16.62 40.99 4.79
335 336 3.755628 GCCCACTAGACGCGTCCA 61.756 66.667 34.08 21.72 0.00 4.02
336 337 3.077519 GCCCACTAGACGCGTCCAT 62.078 63.158 34.08 20.24 0.00 3.41
337 338 1.226974 CCCACTAGACGCGTCCATG 60.227 63.158 34.08 26.98 0.00 3.66
338 339 1.511305 CCACTAGACGCGTCCATGT 59.489 57.895 34.08 25.61 0.00 3.21
339 340 0.525668 CCACTAGACGCGTCCATGTC 60.526 60.000 34.08 10.65 35.33 3.06
340 341 0.452184 CACTAGACGCGTCCATGTCT 59.548 55.000 34.08 17.97 46.60 3.41
341 342 1.135373 CACTAGACGCGTCCATGTCTT 60.135 52.381 34.08 17.23 42.61 3.01
342 343 1.544691 ACTAGACGCGTCCATGTCTTT 59.455 47.619 34.08 16.48 42.61 2.52
343 344 2.029290 ACTAGACGCGTCCATGTCTTTT 60.029 45.455 34.08 15.74 42.61 2.27
344 345 1.878953 AGACGCGTCCATGTCTTTTT 58.121 45.000 34.08 10.11 42.61 1.94
366 367 7.636259 TTTTTGCAAAAATATTGGACGAGAG 57.364 32.000 28.85 0.00 33.29 3.20
367 368 6.567687 TTTGCAAAAATATTGGACGAGAGA 57.432 33.333 10.02 0.00 0.00 3.10
368 369 6.567687 TTGCAAAAATATTGGACGAGAGAA 57.432 33.333 0.00 0.00 0.00 2.87
369 370 5.938322 TGCAAAAATATTGGACGAGAGAAC 58.062 37.500 0.00 0.00 0.00 3.01
370 371 5.471797 TGCAAAAATATTGGACGAGAGAACA 59.528 36.000 0.00 0.00 0.00 3.18
371 372 5.795441 GCAAAAATATTGGACGAGAGAACAC 59.205 40.000 0.00 0.00 0.00 3.32
372 373 5.779806 AAAATATTGGACGAGAGAACACG 57.220 39.130 0.00 0.00 36.30 4.49
373 374 4.451629 AATATTGGACGAGAGAACACGT 57.548 40.909 0.00 0.00 44.80 4.49
374 375 2.814280 ATTGGACGAGAGAACACGTT 57.186 45.000 0.00 0.00 42.55 3.99
375 376 2.589798 TTGGACGAGAGAACACGTTT 57.410 45.000 0.00 0.00 42.55 3.60
376 377 1.847818 TGGACGAGAGAACACGTTTG 58.152 50.000 0.00 0.00 42.55 2.93
377 378 1.135527 TGGACGAGAGAACACGTTTGT 59.864 47.619 0.00 0.00 42.55 2.83
378 379 2.358582 TGGACGAGAGAACACGTTTGTA 59.641 45.455 0.00 0.00 42.55 2.41
379 380 3.181488 TGGACGAGAGAACACGTTTGTAA 60.181 43.478 0.00 0.00 42.55 2.41
380 381 3.798337 GGACGAGAGAACACGTTTGTAAA 59.202 43.478 0.00 0.00 42.55 2.01
381 382 4.317628 GGACGAGAGAACACGTTTGTAAAC 60.318 45.833 0.00 0.00 42.55 2.01
391 392 1.310904 GTTTGTAAACGGGTCAGGCA 58.689 50.000 0.00 0.00 0.00 4.75
392 393 1.265905 GTTTGTAAACGGGTCAGGCAG 59.734 52.381 0.00 0.00 0.00 4.85
393 394 0.887387 TTGTAAACGGGTCAGGCAGC 60.887 55.000 0.00 0.00 0.00 5.25
394 395 1.302192 GTAAACGGGTCAGGCAGCA 60.302 57.895 0.00 0.00 0.00 4.41
395 396 0.676782 GTAAACGGGTCAGGCAGCAT 60.677 55.000 0.00 0.00 0.00 3.79
396 397 0.676466 TAAACGGGTCAGGCAGCATG 60.676 55.000 0.00 0.00 40.87 4.06
397 398 2.410322 AAACGGGTCAGGCAGCATGA 62.410 55.000 5.43 5.43 39.69 3.07
398 399 2.513204 CGGGTCAGGCAGCATGAG 60.513 66.667 10.72 0.00 39.69 2.90
399 400 2.827642 GGGTCAGGCAGCATGAGC 60.828 66.667 27.08 27.08 42.94 4.26
416 417 2.321213 GCTATAGCTGGCCAAACGG 58.679 57.895 17.75 0.00 38.21 4.44
417 418 1.166531 GCTATAGCTGGCCAAACGGG 61.167 60.000 17.75 0.00 38.21 5.28
426 427 2.203153 CCAAACGGGCCGGGATAG 60.203 66.667 31.78 14.48 0.00 2.08
427 428 2.587889 CAAACGGGCCGGGATAGT 59.412 61.111 31.78 4.41 0.00 2.12
428 429 1.078001 CAAACGGGCCGGGATAGTT 60.078 57.895 31.78 11.46 0.00 2.24
429 430 1.078001 AAACGGGCCGGGATAGTTG 60.078 57.895 31.78 0.00 0.00 3.16
430 431 2.546114 AAACGGGCCGGGATAGTTGG 62.546 60.000 31.78 0.00 0.00 3.77
431 432 4.250305 CGGGCCGGGATAGTTGGG 62.250 72.222 20.56 0.00 0.00 4.12
432 433 4.581093 GGGCCGGGATAGTTGGGC 62.581 72.222 2.18 0.00 46.84 5.36
434 435 4.929707 GCCGGGATAGTTGGGCCG 62.930 72.222 2.18 0.00 39.67 6.13
435 436 4.250305 CCGGGATAGTTGGGCCGG 62.250 72.222 0.00 0.00 34.60 6.13
436 437 3.476419 CGGGATAGTTGGGCCGGT 61.476 66.667 1.90 0.00 0.00 5.28
437 438 2.509422 GGGATAGTTGGGCCGGTC 59.491 66.667 1.90 0.00 0.00 4.79
438 439 2.509422 GGATAGTTGGGCCGGTCC 59.491 66.667 21.35 21.35 0.00 4.46
439 440 2.108362 GATAGTTGGGCCGGTCCG 59.892 66.667 22.68 3.60 34.94 4.79
541 542 4.748144 GTGCCTGGGCCTGAAGGG 62.748 72.222 12.58 4.03 41.09 3.95
578 579 2.124860 GGCACGGCCCGATTAACT 60.125 61.111 11.71 0.00 44.06 2.24
579 580 1.747745 GGCACGGCCCGATTAACTT 60.748 57.895 11.71 0.00 44.06 2.66
580 581 1.310216 GGCACGGCCCGATTAACTTT 61.310 55.000 11.71 0.00 44.06 2.66
581 582 0.524414 GCACGGCCCGATTAACTTTT 59.476 50.000 11.71 0.00 0.00 2.27
582 583 1.068125 GCACGGCCCGATTAACTTTTT 60.068 47.619 11.71 0.00 0.00 1.94
615 616 8.644374 TTTTATGTATCCTAATATGGGCCAAC 57.356 34.615 11.89 0.35 0.00 3.77
616 617 5.858876 ATGTATCCTAATATGGGCCAACA 57.141 39.130 11.89 7.42 0.00 3.33
617 618 5.241403 TGTATCCTAATATGGGCCAACAG 57.759 43.478 11.89 5.14 0.00 3.16
618 619 3.814504 ATCCTAATATGGGCCAACAGG 57.185 47.619 11.89 14.64 0.00 4.00
619 620 2.498441 TCCTAATATGGGCCAACAGGT 58.502 47.619 11.89 0.00 0.00 4.00
620 621 3.671079 TCCTAATATGGGCCAACAGGTA 58.329 45.455 11.89 0.00 0.00 3.08
621 622 4.048600 TCCTAATATGGGCCAACAGGTAA 58.951 43.478 11.89 0.00 0.00 2.85
622 623 4.479056 TCCTAATATGGGCCAACAGGTAAA 59.521 41.667 11.89 0.00 0.00 2.01
623 624 5.044030 TCCTAATATGGGCCAACAGGTAAAA 60.044 40.000 11.89 0.00 0.00 1.52
624 625 5.659079 CCTAATATGGGCCAACAGGTAAAAA 59.341 40.000 11.89 0.00 0.00 1.94
625 626 6.326323 CCTAATATGGGCCAACAGGTAAAAAT 59.674 38.462 11.89 0.00 0.00 1.82
626 627 7.507616 CCTAATATGGGCCAACAGGTAAAAATA 59.492 37.037 11.89 0.00 0.00 1.40
627 628 6.976934 ATATGGGCCAACAGGTAAAAATAG 57.023 37.500 11.89 0.00 0.00 1.73
628 629 3.436243 TGGGCCAACAGGTAAAAATAGG 58.564 45.455 2.13 0.00 0.00 2.57
629 630 2.167693 GGGCCAACAGGTAAAAATAGGC 59.832 50.000 4.39 0.00 40.08 3.93
630 631 3.096852 GGCCAACAGGTAAAAATAGGCT 58.903 45.455 0.00 0.00 40.61 4.58
631 632 4.274978 GGCCAACAGGTAAAAATAGGCTA 58.725 43.478 0.00 0.00 40.61 3.93
632 633 4.707934 GGCCAACAGGTAAAAATAGGCTAA 59.292 41.667 0.00 0.00 40.61 3.09
633 634 5.186215 GGCCAACAGGTAAAAATAGGCTAAA 59.814 40.000 0.00 0.00 40.61 1.85
634 635 6.295405 GGCCAACAGGTAAAAATAGGCTAAAA 60.295 38.462 0.00 0.00 40.61 1.52
635 636 7.156000 GCCAACAGGTAAAAATAGGCTAAAAA 58.844 34.615 0.00 0.00 37.89 1.94
636 637 7.117236 GCCAACAGGTAAAAATAGGCTAAAAAC 59.883 37.037 0.00 0.00 37.89 2.43
637 638 7.327518 CCAACAGGTAAAAATAGGCTAAAAACG 59.672 37.037 0.00 0.00 0.00 3.60
638 639 6.384224 ACAGGTAAAAATAGGCTAAAAACGC 58.616 36.000 0.00 0.00 0.00 4.84
639 640 6.208007 ACAGGTAAAAATAGGCTAAAAACGCT 59.792 34.615 0.00 0.00 0.00 5.07
640 641 6.745907 CAGGTAAAAATAGGCTAAAAACGCTC 59.254 38.462 0.00 0.00 0.00 5.03
641 642 6.431852 AGGTAAAAATAGGCTAAAAACGCTCA 59.568 34.615 0.00 0.00 0.00 4.26
642 643 6.745907 GGTAAAAATAGGCTAAAAACGCTCAG 59.254 38.462 0.00 0.00 0.00 3.35
643 644 5.959618 AAAATAGGCTAAAAACGCTCAGT 57.040 34.783 0.00 0.00 0.00 3.41
644 645 4.946784 AATAGGCTAAAAACGCTCAGTG 57.053 40.909 0.00 0.00 0.00 3.66
645 646 0.875059 AGGCTAAAAACGCTCAGTGC 59.125 50.000 0.00 0.00 38.57 4.40
655 656 3.611433 GCTCAGTGCGCAAAATAGG 57.389 52.632 14.00 1.46 0.00 2.57
656 657 1.086696 GCTCAGTGCGCAAAATAGGA 58.913 50.000 14.00 2.55 0.00 2.94
657 658 1.063174 GCTCAGTGCGCAAAATAGGAG 59.937 52.381 14.00 13.65 0.00 3.69
658 659 1.667724 CTCAGTGCGCAAAATAGGAGG 59.332 52.381 14.00 0.00 0.00 4.30
659 660 1.003118 TCAGTGCGCAAAATAGGAGGT 59.997 47.619 14.00 0.00 0.00 3.85
660 661 2.235155 TCAGTGCGCAAAATAGGAGGTA 59.765 45.455 14.00 0.00 0.00 3.08
661 662 2.609459 CAGTGCGCAAAATAGGAGGTAG 59.391 50.000 14.00 0.00 0.00 3.18
662 663 2.500098 AGTGCGCAAAATAGGAGGTAGA 59.500 45.455 14.00 0.00 0.00 2.59
663 664 3.134804 AGTGCGCAAAATAGGAGGTAGAT 59.865 43.478 14.00 0.00 0.00 1.98
664 665 3.877508 GTGCGCAAAATAGGAGGTAGATT 59.122 43.478 14.00 0.00 0.00 2.40
665 666 5.054477 GTGCGCAAAATAGGAGGTAGATTA 58.946 41.667 14.00 0.00 0.00 1.75
666 667 5.177696 GTGCGCAAAATAGGAGGTAGATTAG 59.822 44.000 14.00 0.00 0.00 1.73
667 668 5.163343 TGCGCAAAATAGGAGGTAGATTAGT 60.163 40.000 8.16 0.00 0.00 2.24
668 669 6.041182 TGCGCAAAATAGGAGGTAGATTAGTA 59.959 38.462 8.16 0.00 0.00 1.82
669 670 6.586844 GCGCAAAATAGGAGGTAGATTAGTAG 59.413 42.308 0.30 0.00 0.00 2.57
670 671 7.091443 CGCAAAATAGGAGGTAGATTAGTAGG 58.909 42.308 0.00 0.00 0.00 3.18
671 672 6.874664 GCAAAATAGGAGGTAGATTAGTAGGC 59.125 42.308 0.00 0.00 0.00 3.93
672 673 7.387643 CAAAATAGGAGGTAGATTAGTAGGCC 58.612 42.308 0.00 0.00 0.00 5.19
673 674 6.486891 AATAGGAGGTAGATTAGTAGGCCT 57.513 41.667 11.78 11.78 0.00 5.19
674 675 4.120946 AGGAGGTAGATTAGTAGGCCTG 57.879 50.000 17.99 0.00 0.00 4.85
675 676 3.166679 GGAGGTAGATTAGTAGGCCTGG 58.833 54.545 17.99 0.00 0.00 4.45
676 677 2.563620 GAGGTAGATTAGTAGGCCTGGC 59.436 54.545 17.99 11.05 0.00 4.85
677 678 1.272769 GGTAGATTAGTAGGCCTGGCG 59.727 57.143 17.99 0.00 0.00 5.69
678 679 1.962100 GTAGATTAGTAGGCCTGGCGT 59.038 52.381 17.99 18.78 0.00 5.68
679 680 0.753262 AGATTAGTAGGCCTGGCGTG 59.247 55.000 23.18 0.00 0.00 5.34
680 681 0.880718 GATTAGTAGGCCTGGCGTGC 60.881 60.000 23.18 21.39 0.00 5.34
703 704 4.643387 GGCCGGCCCGATTAGCAT 62.643 66.667 36.64 0.00 0.00 3.79
704 705 2.345991 GCCGGCCCGATTAGCATA 59.654 61.111 18.11 0.00 0.00 3.14
705 706 2.033194 GCCGGCCCGATTAGCATAC 61.033 63.158 18.11 0.00 0.00 2.39
706 707 1.736645 CCGGCCCGATTAGCATACG 60.737 63.158 3.71 0.00 0.00 3.06
707 708 1.736645 CGGCCCGATTAGCATACGG 60.737 63.158 0.00 0.00 45.24 4.02
710 711 4.278956 CCGATTAGCATACGGGCC 57.721 61.111 0.00 0.00 42.48 5.80
711 712 1.736645 CCGATTAGCATACGGGCCG 60.737 63.158 27.06 27.06 42.48 6.13
712 713 1.006571 CGATTAGCATACGGGCCGT 60.007 57.895 35.91 35.91 44.35 5.68
713 714 1.282248 CGATTAGCATACGGGCCGTG 61.282 60.000 39.80 25.77 41.39 4.94
714 715 1.566018 GATTAGCATACGGGCCGTGC 61.566 60.000 39.80 33.49 41.39 5.34
732 733 2.124819 CTGGGCTACAGGCTGCAG 60.125 66.667 15.89 13.00 43.70 4.41
733 734 4.415150 TGGGCTACAGGCTGCAGC 62.415 66.667 30.88 30.88 41.46 5.25
734 735 4.415150 GGGCTACAGGCTGCAGCA 62.415 66.667 37.63 18.23 38.49 4.41
735 736 3.130160 GGCTACAGGCTGCAGCAC 61.130 66.667 37.63 26.51 38.49 4.40
736 737 3.494336 GCTACAGGCTGCAGCACG 61.494 66.667 37.63 28.94 44.36 5.34
737 738 3.494336 CTACAGGCTGCAGCACGC 61.494 66.667 37.63 21.94 44.36 5.34
766 767 3.610637 GGCACGGCCCGTATAATAA 57.389 52.632 9.25 0.00 44.06 1.40
767 768 2.103537 GGCACGGCCCGTATAATAAT 57.896 50.000 9.25 0.00 44.06 1.28
768 769 2.004733 GGCACGGCCCGTATAATAATC 58.995 52.381 9.25 0.00 44.06 1.75
769 770 1.657094 GCACGGCCCGTATAATAATCG 59.343 52.381 9.25 0.00 38.32 3.34
770 771 2.927871 GCACGGCCCGTATAATAATCGT 60.928 50.000 9.25 0.00 38.32 3.73
771 772 2.664568 CACGGCCCGTATAATAATCGTG 59.335 50.000 9.25 0.00 38.32 4.35
772 773 1.657094 CGGCCCGTATAATAATCGTGC 59.343 52.381 0.00 0.00 0.00 5.34
773 774 2.004733 GGCCCGTATAATAATCGTGCC 58.995 52.381 0.00 0.00 40.23 5.01
774 775 2.354403 GGCCCGTATAATAATCGTGCCT 60.354 50.000 0.00 0.00 42.74 4.75
775 776 3.119029 GGCCCGTATAATAATCGTGCCTA 60.119 47.826 0.00 0.00 42.74 3.93
776 777 4.110482 GCCCGTATAATAATCGTGCCTAG 58.890 47.826 0.00 0.00 0.00 3.02
777 778 4.679662 CCCGTATAATAATCGTGCCTAGG 58.320 47.826 3.67 3.67 0.00 3.02
778 779 4.110482 CCGTATAATAATCGTGCCTAGGC 58.890 47.826 27.71 27.71 42.35 3.93
779 780 3.789756 CGTATAATAATCGTGCCTAGGCG 59.210 47.826 28.28 15.51 45.51 5.52
780 781 2.736144 TAATAATCGTGCCTAGGCGG 57.264 50.000 28.28 21.97 45.51 6.13
781 782 0.034896 AATAATCGTGCCTAGGCGGG 59.965 55.000 28.28 21.60 45.51 6.13
807 808 3.720494 TGCCAGGCACGATTAGGA 58.280 55.556 11.22 0.00 31.71 2.94
808 809 2.220953 TGCCAGGCACGATTAGGAT 58.779 52.632 11.22 0.00 31.71 3.24
809 810 0.179048 TGCCAGGCACGATTAGGATG 60.179 55.000 11.22 0.00 31.71 3.51
810 811 0.886490 GCCAGGCACGATTAGGATGG 60.886 60.000 6.55 0.00 0.00 3.51
811 812 0.250467 CCAGGCACGATTAGGATGGG 60.250 60.000 0.00 0.00 0.00 4.00
812 813 0.469917 CAGGCACGATTAGGATGGGT 59.530 55.000 0.00 0.00 0.00 4.51
813 814 0.759346 AGGCACGATTAGGATGGGTC 59.241 55.000 0.00 0.00 0.00 4.46
814 815 0.600255 GGCACGATTAGGATGGGTCG 60.600 60.000 0.00 0.00 39.78 4.79
815 816 0.104304 GCACGATTAGGATGGGTCGT 59.896 55.000 0.00 0.00 46.95 4.34
817 818 0.104304 ACGATTAGGATGGGTCGTGC 59.896 55.000 0.00 0.00 44.61 5.34
818 819 0.600255 CGATTAGGATGGGTCGTGCC 60.600 60.000 0.00 0.00 0.00 5.01
819 820 0.600255 GATTAGGATGGGTCGTGCCG 60.600 60.000 0.00 0.00 38.44 5.69
820 821 1.335132 ATTAGGATGGGTCGTGCCGT 61.335 55.000 0.00 0.00 38.44 5.68
821 822 2.233605 TTAGGATGGGTCGTGCCGTG 62.234 60.000 0.00 0.00 38.44 4.94
854 855 3.006672 CCCGTTTGGCCAGCTATAG 57.993 57.895 5.11 0.00 0.00 1.31
855 856 1.166531 CCCGTTTGGCCAGCTATAGC 61.167 60.000 17.33 17.33 42.49 2.97
856 857 0.463654 CCGTTTGGCCAGCTATAGCA 60.464 55.000 26.07 2.34 45.16 3.49
857 858 1.597742 CGTTTGGCCAGCTATAGCAT 58.402 50.000 26.07 9.00 45.16 3.79
858 859 1.265095 CGTTTGGCCAGCTATAGCATG 59.735 52.381 26.07 19.11 45.16 4.06
859 860 2.575532 GTTTGGCCAGCTATAGCATGA 58.424 47.619 26.07 2.91 45.16 3.07
860 861 2.551459 GTTTGGCCAGCTATAGCATGAG 59.449 50.000 26.07 12.30 45.16 2.90
861 862 0.035881 TGGCCAGCTATAGCATGAGC 59.964 55.000 26.07 20.17 45.16 4.26
862 863 0.676151 GGCCAGCTATAGCATGAGCC 60.676 60.000 26.07 24.30 45.16 4.70
863 864 0.035881 GCCAGCTATAGCATGAGCCA 59.964 55.000 26.07 0.00 45.16 4.75
872 873 0.107312 AGCATGAGCCATGAGGTGAC 60.107 55.000 16.46 1.36 43.81 3.67
899 915 2.780924 TGGGGCCCACTCCACTTT 60.781 61.111 24.76 0.00 0.00 2.66
907 928 1.318576 CCACTCCACTTTGGGTTGAC 58.681 55.000 0.00 0.00 38.32 3.18
922 943 3.007979 GTTGACCACCAACGAAAATCC 57.992 47.619 0.00 0.00 44.76 3.01
934 959 1.676014 CGAAAATCCTCTCCACGGCTT 60.676 52.381 0.00 0.00 0.00 4.35
1168 1210 0.751452 GGATTACCTCGTCTCCACCC 59.249 60.000 0.00 0.00 0.00 4.61
1332 1374 2.554636 CCAGTTGCTCTGCGCCAAA 61.555 57.895 4.18 0.00 42.38 3.28
1383 1425 3.697747 CTCACCGGCGTGGGGTTA 61.698 66.667 6.01 0.00 43.99 2.85
1400 1444 2.541178 GGTTATCGCGTTCTGAGATCGT 60.541 50.000 13.66 0.00 38.20 3.73
1401 1445 2.665056 TATCGCGTTCTGAGATCGTC 57.335 50.000 13.66 6.15 38.20 4.20
1402 1446 0.316278 ATCGCGTTCTGAGATCGTCG 60.316 55.000 13.66 15.72 30.54 5.12
1410 1454 2.069465 CTGAGATCGTCGGCCTCCTG 62.069 65.000 0.00 0.00 0.00 3.86
1420 1464 3.532155 GCCTCCTGTCGCTCGGAT 61.532 66.667 0.00 0.00 0.00 4.18
1445 1489 1.676529 CAAACTCCGCTCTAGATCCGA 59.323 52.381 12.84 0.42 0.00 4.55
1963 2008 1.435515 CTCTCGTACAGCCTGGAGC 59.564 63.158 0.00 0.00 44.25 4.70
2185 2230 4.943705 TCAGATTTACATGAAGCAAGGACC 59.056 41.667 0.00 0.00 0.00 4.46
2204 2251 4.142038 GACCGGCTATGGAAATTGGTAAT 58.858 43.478 0.00 0.00 0.00 1.89
2599 2705 8.627403 CAGTAAATATGAGTTGCTTTCATCCAT 58.373 33.333 2.22 0.00 36.68 3.41
2696 3006 8.903820 AGGTTATGCTTAGAAATGTATGTTTCC 58.096 33.333 0.00 0.00 38.55 3.13
2711 3021 3.334691 TGTTTCCATTCGGTGTCTCATC 58.665 45.455 0.00 0.00 0.00 2.92
2736 3047 4.080072 TGCCTTTTGGTTTCTTTCCCATTT 60.080 37.500 0.00 0.00 42.99 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.745141 CGAAAGAAGGATCTGCCCAGG 60.745 57.143 0.00 0.00 35.59 4.45
1 2 1.065854 ACGAAAGAAGGATCTGCCCAG 60.066 52.381 0.00 0.00 35.59 4.45
2 3 0.984230 ACGAAAGAAGGATCTGCCCA 59.016 50.000 0.00 0.00 35.59 5.36
3 4 1.066143 TCACGAAAGAAGGATCTGCCC 60.066 52.381 0.00 0.00 35.59 5.36
5 6 2.093973 TCCTCACGAAAGAAGGATCTGC 60.094 50.000 0.00 0.00 40.09 4.26
6 7 3.876274 TCCTCACGAAAGAAGGATCTG 57.124 47.619 0.00 0.00 40.09 2.90
7 8 4.090090 TCTTCCTCACGAAAGAAGGATCT 58.910 43.478 0.00 0.00 42.83 2.75
8 9 4.457834 TCTTCCTCACGAAAGAAGGATC 57.542 45.455 0.00 0.00 42.83 3.36
9 10 4.528596 TCTTCTTCCTCACGAAAGAAGGAT 59.471 41.667 19.29 0.00 42.83 3.24
10 11 3.895656 TCTTCTTCCTCACGAAAGAAGGA 59.104 43.478 19.29 8.20 42.09 3.36
11 12 4.258702 TCTTCTTCCTCACGAAAGAAGG 57.741 45.455 19.29 6.53 38.03 3.46
12 13 5.533482 TCTTCTTCTTCCTCACGAAAGAAG 58.467 41.667 15.39 15.39 42.17 2.85
13 14 5.531122 TCTTCTTCTTCCTCACGAAAGAA 57.469 39.130 0.00 0.00 30.26 2.52
14 15 5.730296 ATCTTCTTCTTCCTCACGAAAGA 57.270 39.130 0.00 0.00 0.00 2.52
15 16 5.518487 GCTATCTTCTTCTTCCTCACGAAAG 59.482 44.000 0.00 0.00 0.00 2.62
16 17 5.411781 GCTATCTTCTTCTTCCTCACGAAA 58.588 41.667 0.00 0.00 0.00 3.46
17 18 4.142138 GGCTATCTTCTTCTTCCTCACGAA 60.142 45.833 0.00 0.00 0.00 3.85
18 19 3.381908 GGCTATCTTCTTCTTCCTCACGA 59.618 47.826 0.00 0.00 0.00 4.35
19 20 3.131223 TGGCTATCTTCTTCTTCCTCACG 59.869 47.826 0.00 0.00 0.00 4.35
20 21 4.442753 CCTGGCTATCTTCTTCTTCCTCAC 60.443 50.000 0.00 0.00 0.00 3.51
21 22 3.708631 CCTGGCTATCTTCTTCTTCCTCA 59.291 47.826 0.00 0.00 0.00 3.86
22 23 3.070878 CCCTGGCTATCTTCTTCTTCCTC 59.929 52.174 0.00 0.00 0.00 3.71
23 24 3.044894 CCCTGGCTATCTTCTTCTTCCT 58.955 50.000 0.00 0.00 0.00 3.36
24 25 2.486370 GCCCTGGCTATCTTCTTCTTCC 60.486 54.545 0.00 0.00 38.26 3.46
25 26 2.804933 CGCCCTGGCTATCTTCTTCTTC 60.805 54.545 6.60 0.00 39.32 2.87
26 27 1.139853 CGCCCTGGCTATCTTCTTCTT 59.860 52.381 6.60 0.00 39.32 2.52
27 28 0.755686 CGCCCTGGCTATCTTCTTCT 59.244 55.000 6.60 0.00 39.32 2.85
28 29 0.882484 GCGCCCTGGCTATCTTCTTC 60.882 60.000 6.60 0.00 39.32 2.87
29 30 1.147153 GCGCCCTGGCTATCTTCTT 59.853 57.895 6.60 0.00 39.32 2.52
30 31 2.037620 CTGCGCCCTGGCTATCTTCT 62.038 60.000 4.18 0.00 39.32 2.85
31 32 1.596477 CTGCGCCCTGGCTATCTTC 60.596 63.158 4.18 0.00 39.32 2.87
32 33 1.915078 AACTGCGCCCTGGCTATCTT 61.915 55.000 4.18 0.00 39.32 2.40
33 34 2.370445 AACTGCGCCCTGGCTATCT 61.370 57.895 4.18 0.00 39.32 1.98
34 35 2.182842 CAACTGCGCCCTGGCTATC 61.183 63.158 4.18 0.00 39.32 2.08
35 36 2.124570 CAACTGCGCCCTGGCTAT 60.125 61.111 4.18 0.00 39.32 2.97
36 37 4.408821 CCAACTGCGCCCTGGCTA 62.409 66.667 4.18 0.00 39.32 3.93
59 60 3.451894 CTCGCCAAACCATGCCCC 61.452 66.667 0.00 0.00 0.00 5.80
60 61 3.451894 CCTCGCCAAACCATGCCC 61.452 66.667 0.00 0.00 0.00 5.36
61 62 2.361104 TCCTCGCCAAACCATGCC 60.361 61.111 0.00 0.00 0.00 4.40
62 63 2.409870 CCTCCTCGCCAAACCATGC 61.410 63.158 0.00 0.00 0.00 4.06
63 64 1.750399 CCCTCCTCGCCAAACCATG 60.750 63.158 0.00 0.00 0.00 3.66
64 65 2.231380 ACCCTCCTCGCCAAACCAT 61.231 57.895 0.00 0.00 0.00 3.55
65 66 2.852075 ACCCTCCTCGCCAAACCA 60.852 61.111 0.00 0.00 0.00 3.67
66 67 2.359975 CACCCTCCTCGCCAAACC 60.360 66.667 0.00 0.00 0.00 3.27
67 68 3.056328 GCACCCTCCTCGCCAAAC 61.056 66.667 0.00 0.00 0.00 2.93
68 69 3.565214 TGCACCCTCCTCGCCAAA 61.565 61.111 0.00 0.00 0.00 3.28
69 70 4.329545 GTGCACCCTCCTCGCCAA 62.330 66.667 5.22 0.00 0.00 4.52
73 74 2.890847 GATCACGTGCACCCTCCTCG 62.891 65.000 11.67 0.00 0.00 4.63
74 75 1.153549 GATCACGTGCACCCTCCTC 60.154 63.158 11.67 0.00 0.00 3.71
75 76 2.660064 GGATCACGTGCACCCTCCT 61.660 63.158 11.67 0.00 0.00 3.69
76 77 2.125106 GGATCACGTGCACCCTCC 60.125 66.667 11.67 8.46 0.00 4.30
77 78 2.125106 GGGATCACGTGCACCCTC 60.125 66.667 29.50 14.53 39.28 4.30
78 79 4.082523 CGGGATCACGTGCACCCT 62.083 66.667 31.52 10.09 40.12 4.34
84 85 4.201679 TAGCCGCGGGATCACGTG 62.202 66.667 29.38 23.76 43.45 4.49
85 86 3.900892 CTAGCCGCGGGATCACGT 61.901 66.667 29.38 0.63 35.98 4.49
87 88 3.917760 AGCTAGCCGCGGGATCAC 61.918 66.667 29.38 9.78 45.59 3.06
88 89 3.916544 CAGCTAGCCGCGGGATCA 61.917 66.667 29.38 0.40 45.59 2.92
114 115 0.241213 GAGCGAAAAAGGGAACTGCC 59.759 55.000 0.00 0.00 42.68 4.85
115 116 0.241213 GGAGCGAAAAAGGGAACTGC 59.759 55.000 0.00 0.00 42.68 4.40
116 117 0.517316 CGGAGCGAAAAAGGGAACTG 59.483 55.000 0.00 0.00 42.68 3.16
117 118 0.395312 TCGGAGCGAAAAAGGGAACT 59.605 50.000 0.00 0.00 35.53 3.01
118 119 1.130561 CATCGGAGCGAAAAAGGGAAC 59.869 52.381 0.00 0.00 39.99 3.62
119 120 1.448985 CATCGGAGCGAAAAAGGGAA 58.551 50.000 0.00 0.00 39.99 3.97
120 121 0.392461 CCATCGGAGCGAAAAAGGGA 60.392 55.000 0.00 0.00 39.99 4.20
121 122 1.376609 CCCATCGGAGCGAAAAAGGG 61.377 60.000 0.00 0.00 39.99 3.95
122 123 1.993369 GCCCATCGGAGCGAAAAAGG 61.993 60.000 0.00 0.00 39.99 3.11
123 124 1.429423 GCCCATCGGAGCGAAAAAG 59.571 57.895 0.00 0.00 39.99 2.27
124 125 3.585856 GCCCATCGGAGCGAAAAA 58.414 55.556 0.00 0.00 39.99 1.94
142 143 1.800229 AAATGGTCCACCTGGTCCCC 61.800 60.000 0.00 0.00 41.82 4.81
143 144 0.611896 CAAATGGTCCACCTGGTCCC 60.612 60.000 0.00 0.00 41.82 4.46
144 145 0.611896 CCAAATGGTCCACCTGGTCC 60.612 60.000 11.54 0.00 42.66 4.46
145 146 0.611896 CCCAAATGGTCCACCTGGTC 60.612 60.000 16.51 0.00 36.82 4.02
146 147 1.464722 CCCAAATGGTCCACCTGGT 59.535 57.895 16.51 0.00 36.82 4.00
147 148 1.984026 GCCCAAATGGTCCACCTGG 60.984 63.158 12.48 12.48 36.82 4.45
148 149 2.342650 CGCCCAAATGGTCCACCTG 61.343 63.158 0.00 0.00 36.82 4.00
149 150 2.035626 CGCCCAAATGGTCCACCT 59.964 61.111 0.00 0.00 36.82 4.00
150 151 3.068064 CCGCCCAAATGGTCCACC 61.068 66.667 0.00 0.00 36.04 4.61
151 152 3.068064 CCCGCCCAAATGGTCCAC 61.068 66.667 0.00 0.00 36.04 4.02
178 179 0.039798 GCCCGAACGAAAAAGGGAAC 60.040 55.000 3.19 0.00 46.64 3.62
179 180 1.508808 CGCCCGAACGAAAAAGGGAA 61.509 55.000 3.19 0.00 46.64 3.97
180 181 1.962306 CGCCCGAACGAAAAAGGGA 60.962 57.895 3.19 0.00 46.64 4.20
181 182 2.559330 CGCCCGAACGAAAAAGGG 59.441 61.111 0.00 0.00 46.44 3.95
182 183 2.559330 CCGCCCGAACGAAAAAGG 59.441 61.111 0.00 0.00 34.06 3.11
183 184 2.559330 CCCGCCCGAACGAAAAAG 59.441 61.111 0.00 0.00 34.06 2.27
184 185 3.662153 GCCCGCCCGAACGAAAAA 61.662 61.111 0.00 0.00 34.06 1.94
201 202 4.016706 GTGGTCCACCTGGTCCCG 62.017 72.222 11.30 0.00 41.82 5.14
202 203 4.016706 CGTGGTCCACCTGGTCCC 62.017 72.222 16.60 0.00 41.82 4.46
203 204 3.239253 ACGTGGTCCACCTGGTCC 61.239 66.667 16.60 0.00 42.66 4.46
204 205 2.030562 CACGTGGTCCACCTGGTC 59.969 66.667 16.60 0.00 36.82 4.02
205 206 3.556306 CCACGTGGTCCACCTGGT 61.556 66.667 26.95 12.26 36.36 4.00
206 207 4.329545 CCCACGTGGTCCACCTGG 62.330 72.222 31.80 25.48 39.22 4.45
222 223 3.553095 AAACAGTCCCCTGCTCGCC 62.553 63.158 0.00 0.00 42.81 5.54
223 224 2.032681 AAACAGTCCCCTGCTCGC 59.967 61.111 0.00 0.00 42.81 5.03
224 225 1.376037 GGAAACAGTCCCCTGCTCG 60.376 63.158 0.00 0.00 42.81 5.03
225 226 4.724262 GGAAACAGTCCCCTGCTC 57.276 61.111 0.00 0.00 42.81 4.26
233 234 1.721926 CGAGCGAAAGAGGAAACAGTC 59.278 52.381 0.00 0.00 0.00 3.51
234 235 1.340248 TCGAGCGAAAGAGGAAACAGT 59.660 47.619 0.00 0.00 0.00 3.55
235 236 1.989165 CTCGAGCGAAAGAGGAAACAG 59.011 52.381 0.00 0.00 0.00 3.16
236 237 2.065993 CTCGAGCGAAAGAGGAAACA 57.934 50.000 0.00 0.00 0.00 2.83
242 243 2.496817 CCCCCTCGAGCGAAAGAG 59.503 66.667 6.99 0.00 0.00 2.85
262 263 1.339929 CCGAAAAAGGAAACCACCTGG 59.660 52.381 0.00 0.00 40.49 4.45
263 264 1.339929 CCCGAAAAAGGAAACCACCTG 59.660 52.381 0.00 0.00 40.49 4.00
264 265 1.063492 ACCCGAAAAAGGAAACCACCT 60.063 47.619 0.00 0.00 42.69 4.00
265 266 1.067974 CACCCGAAAAAGGAAACCACC 59.932 52.381 0.00 0.00 0.00 4.61
266 267 1.067974 CCACCCGAAAAAGGAAACCAC 59.932 52.381 0.00 0.00 0.00 4.16
267 268 1.404843 CCACCCGAAAAAGGAAACCA 58.595 50.000 0.00 0.00 0.00 3.67
268 269 0.032952 GCCACCCGAAAAAGGAAACC 59.967 55.000 0.00 0.00 0.00 3.27
269 270 0.032952 GGCCACCCGAAAAAGGAAAC 59.967 55.000 0.00 0.00 0.00 2.78
270 271 2.432119 GGCCACCCGAAAAAGGAAA 58.568 52.632 0.00 0.00 0.00 3.13
271 272 4.184439 GGCCACCCGAAAAAGGAA 57.816 55.556 0.00 0.00 0.00 3.36
289 290 1.596477 CTTGGGATCGCTAGCCAGC 60.596 63.158 9.66 0.00 44.90 4.85
290 291 1.070445 CCTTGGGATCGCTAGCCAG 59.930 63.158 9.66 0.00 30.46 4.85
291 292 3.106986 GCCTTGGGATCGCTAGCCA 62.107 63.158 9.66 0.00 30.46 4.75
292 293 2.281139 GCCTTGGGATCGCTAGCC 60.281 66.667 9.66 1.32 0.00 3.93
293 294 2.663188 CGCCTTGGGATCGCTAGC 60.663 66.667 14.37 4.06 0.00 3.42
294 295 2.029666 CCGCCTTGGGATCGCTAG 59.970 66.667 13.13 13.13 0.00 3.42
295 296 4.235762 GCCGCCTTGGGATCGCTA 62.236 66.667 11.46 2.34 38.63 4.26
318 319 3.077519 ATGGACGCGTCTAGTGGGC 62.078 63.158 35.50 19.20 33.90 5.36
319 320 1.226974 CATGGACGCGTCTAGTGGG 60.227 63.158 35.50 18.28 33.90 4.61
320 321 0.525668 GACATGGACGCGTCTAGTGG 60.526 60.000 35.50 24.91 33.90 4.00
321 322 0.452184 AGACATGGACGCGTCTAGTG 59.548 55.000 35.50 29.78 40.67 2.74
322 323 1.174783 AAGACATGGACGCGTCTAGT 58.825 50.000 35.50 29.06 41.60 2.57
323 324 2.279582 AAAGACATGGACGCGTCTAG 57.720 50.000 35.50 26.41 41.60 2.43
324 325 2.736144 AAAAGACATGGACGCGTCTA 57.264 45.000 35.50 31.84 41.60 2.59
325 326 1.878953 AAAAAGACATGGACGCGTCT 58.121 45.000 35.50 18.66 44.30 4.18
342 343 7.429633 TCTCTCGTCCAATATTTTTGCAAAAA 58.570 30.769 32.91 32.91 41.59 1.94
343 344 6.976088 TCTCTCGTCCAATATTTTTGCAAAA 58.024 32.000 20.46 20.46 0.00 2.44
344 345 6.567687 TCTCTCGTCCAATATTTTTGCAAA 57.432 33.333 8.05 8.05 0.00 3.68
345 346 6.016693 TGTTCTCTCGTCCAATATTTTTGCAA 60.017 34.615 0.00 0.00 0.00 4.08
346 347 5.471797 TGTTCTCTCGTCCAATATTTTTGCA 59.528 36.000 0.00 0.00 0.00 4.08
347 348 5.795441 GTGTTCTCTCGTCCAATATTTTTGC 59.205 40.000 0.00 0.00 0.00 3.68
348 349 6.015504 CGTGTTCTCTCGTCCAATATTTTTG 58.984 40.000 0.00 0.00 0.00 2.44
349 350 5.699458 ACGTGTTCTCTCGTCCAATATTTTT 59.301 36.000 0.00 0.00 39.07 1.94
350 351 5.235516 ACGTGTTCTCTCGTCCAATATTTT 58.764 37.500 0.00 0.00 39.07 1.82
351 352 4.817517 ACGTGTTCTCTCGTCCAATATTT 58.182 39.130 0.00 0.00 39.07 1.40
352 353 4.451629 ACGTGTTCTCTCGTCCAATATT 57.548 40.909 0.00 0.00 39.07 1.28
353 354 4.451629 AACGTGTTCTCTCGTCCAATAT 57.548 40.909 0.00 0.00 41.76 1.28
354 355 3.928727 AACGTGTTCTCTCGTCCAATA 57.071 42.857 0.00 0.00 41.76 1.90
355 356 2.800544 CAAACGTGTTCTCTCGTCCAAT 59.199 45.455 0.00 0.00 41.76 3.16
356 357 2.198406 CAAACGTGTTCTCTCGTCCAA 58.802 47.619 0.00 0.00 41.76 3.53
357 358 1.135527 ACAAACGTGTTCTCTCGTCCA 59.864 47.619 0.00 0.00 41.76 4.02
358 359 1.849097 ACAAACGTGTTCTCTCGTCC 58.151 50.000 0.00 0.00 41.76 4.79
359 360 4.744884 GTTTACAAACGTGTTCTCTCGTC 58.255 43.478 0.00 0.00 41.76 4.20
360 361 4.766969 GTTTACAAACGTGTTCTCTCGT 57.233 40.909 0.00 0.00 43.89 4.18
372 373 1.265905 CTGCCTGACCCGTTTACAAAC 59.734 52.381 0.00 0.00 35.59 2.93
373 374 1.600023 CTGCCTGACCCGTTTACAAA 58.400 50.000 0.00 0.00 0.00 2.83
374 375 0.887387 GCTGCCTGACCCGTTTACAA 60.887 55.000 0.00 0.00 0.00 2.41
375 376 1.302192 GCTGCCTGACCCGTTTACA 60.302 57.895 0.00 0.00 0.00 2.41
376 377 0.676782 ATGCTGCCTGACCCGTTTAC 60.677 55.000 0.00 0.00 0.00 2.01
377 378 0.676466 CATGCTGCCTGACCCGTTTA 60.676 55.000 0.00 0.00 0.00 2.01
378 379 1.973281 CATGCTGCCTGACCCGTTT 60.973 57.895 0.00 0.00 0.00 3.60
379 380 2.360350 CATGCTGCCTGACCCGTT 60.360 61.111 0.00 0.00 0.00 4.44
380 381 3.320879 CTCATGCTGCCTGACCCGT 62.321 63.158 3.38 0.00 0.00 5.28
381 382 2.513204 CTCATGCTGCCTGACCCG 60.513 66.667 3.38 0.00 0.00 5.28
382 383 2.827642 GCTCATGCTGCCTGACCC 60.828 66.667 3.38 0.00 36.03 4.46
398 399 1.166531 CCCGTTTGGCCAGCTATAGC 61.167 60.000 17.33 17.33 42.49 2.97
399 400 3.006672 CCCGTTTGGCCAGCTATAG 57.993 57.895 5.11 0.00 0.00 1.31
409 410 2.203153 CTATCCCGGCCCGTTTGG 60.203 66.667 0.85 0.00 37.09 3.28
410 411 1.078001 AACTATCCCGGCCCGTTTG 60.078 57.895 0.85 0.00 0.00 2.93
411 412 1.078001 CAACTATCCCGGCCCGTTT 60.078 57.895 0.85 0.00 0.00 3.60
412 413 2.587889 CAACTATCCCGGCCCGTT 59.412 61.111 0.85 0.00 0.00 4.44
413 414 3.476419 CCAACTATCCCGGCCCGT 61.476 66.667 0.85 0.00 0.00 5.28
414 415 4.250305 CCCAACTATCCCGGCCCG 62.250 72.222 0.00 0.00 0.00 6.13
415 416 4.581093 GCCCAACTATCCCGGCCC 62.581 72.222 0.00 0.00 35.23 5.80
417 418 4.929707 CGGCCCAACTATCCCGGC 62.930 72.222 0.00 0.00 40.85 6.13
419 420 3.456105 GACCGGCCCAACTATCCCG 62.456 68.421 0.00 0.00 40.39 5.14
420 421 2.509422 GACCGGCCCAACTATCCC 59.491 66.667 0.00 0.00 0.00 3.85
421 422 2.509422 GGACCGGCCCAACTATCC 59.491 66.667 0.00 0.00 0.00 2.59
422 423 2.108362 CGGACCGGCCCAACTATC 59.892 66.667 7.85 0.00 0.00 2.08
423 424 3.476419 CCGGACCGGCCCAACTAT 61.476 66.667 22.37 0.00 41.17 2.12
524 525 4.748144 CCCTTCAGGCCCAGGCAC 62.748 72.222 11.50 0.00 44.11 5.01
562 563 0.524414 AAAAGTTAATCGGGCCGTGC 59.476 50.000 27.32 12.25 0.00 5.34
589 590 9.084533 GTTGGCCCATATTAGGATACATAAAAA 57.915 33.333 0.00 0.00 41.41 1.94
590 591 8.228206 TGTTGGCCCATATTAGGATACATAAAA 58.772 33.333 0.00 0.00 41.41 1.52
591 592 7.760607 TGTTGGCCCATATTAGGATACATAAA 58.239 34.615 0.00 0.00 41.41 1.40
592 593 7.336475 TGTTGGCCCATATTAGGATACATAA 57.664 36.000 0.00 0.00 41.41 1.90
593 594 6.069673 CCTGTTGGCCCATATTAGGATACATA 60.070 42.308 0.00 0.00 41.41 2.29
594 595 5.281193 CCTGTTGGCCCATATTAGGATACAT 60.281 44.000 0.00 0.00 41.41 2.29
595 596 4.042809 CCTGTTGGCCCATATTAGGATACA 59.957 45.833 0.00 0.00 41.41 2.29
596 597 4.042934 ACCTGTTGGCCCATATTAGGATAC 59.957 45.833 0.00 0.00 36.63 2.24
597 598 4.247814 ACCTGTTGGCCCATATTAGGATA 58.752 43.478 0.00 0.00 36.63 2.59
598 599 3.063650 ACCTGTTGGCCCATATTAGGAT 58.936 45.455 0.00 0.00 36.63 3.24
599 600 2.498441 ACCTGTTGGCCCATATTAGGA 58.502 47.619 0.00 0.00 36.63 2.94
600 601 4.447138 TTACCTGTTGGCCCATATTAGG 57.553 45.455 0.00 1.97 36.63 2.69
601 602 6.783708 TTTTTACCTGTTGGCCCATATTAG 57.216 37.500 0.00 0.00 36.63 1.73
602 603 7.507616 CCTATTTTTACCTGTTGGCCCATATTA 59.492 37.037 0.00 0.00 36.63 0.98
603 604 6.326323 CCTATTTTTACCTGTTGGCCCATATT 59.674 38.462 0.00 0.00 36.63 1.28
604 605 5.838521 CCTATTTTTACCTGTTGGCCCATAT 59.161 40.000 0.00 0.00 36.63 1.78
605 606 5.205056 CCTATTTTTACCTGTTGGCCCATA 58.795 41.667 0.00 0.00 36.63 2.74
606 607 4.030216 CCTATTTTTACCTGTTGGCCCAT 58.970 43.478 0.00 0.00 36.63 4.00
607 608 3.436243 CCTATTTTTACCTGTTGGCCCA 58.564 45.455 0.00 0.00 36.63 5.36
608 609 2.167693 GCCTATTTTTACCTGTTGGCCC 59.832 50.000 0.00 0.00 36.63 5.80
609 610 3.096852 AGCCTATTTTTACCTGTTGGCC 58.903 45.455 0.00 0.00 39.90 5.36
610 611 5.907866 TTAGCCTATTTTTACCTGTTGGC 57.092 39.130 0.00 0.00 39.40 4.52
611 612 7.327518 CGTTTTTAGCCTATTTTTACCTGTTGG 59.672 37.037 0.00 0.00 39.83 3.77
612 613 7.148869 GCGTTTTTAGCCTATTTTTACCTGTTG 60.149 37.037 0.00 0.00 0.00 3.33
613 614 6.864685 GCGTTTTTAGCCTATTTTTACCTGTT 59.135 34.615 0.00 0.00 0.00 3.16
614 615 6.208007 AGCGTTTTTAGCCTATTTTTACCTGT 59.792 34.615 0.00 0.00 34.64 4.00
615 616 6.617879 AGCGTTTTTAGCCTATTTTTACCTG 58.382 36.000 0.00 0.00 34.64 4.00
616 617 6.431852 TGAGCGTTTTTAGCCTATTTTTACCT 59.568 34.615 0.00 0.00 34.64 3.08
617 618 6.614160 TGAGCGTTTTTAGCCTATTTTTACC 58.386 36.000 0.00 0.00 34.64 2.85
618 619 7.270579 CACTGAGCGTTTTTAGCCTATTTTTAC 59.729 37.037 0.00 0.00 34.64 2.01
619 620 7.302524 CACTGAGCGTTTTTAGCCTATTTTTA 58.697 34.615 0.00 0.00 34.64 1.52
620 621 6.149633 CACTGAGCGTTTTTAGCCTATTTTT 58.850 36.000 0.00 0.00 34.64 1.94
621 622 5.699839 CACTGAGCGTTTTTAGCCTATTTT 58.300 37.500 0.00 0.00 34.64 1.82
622 623 4.379499 GCACTGAGCGTTTTTAGCCTATTT 60.379 41.667 0.00 0.00 34.64 1.40
623 624 3.127030 GCACTGAGCGTTTTTAGCCTATT 59.873 43.478 0.00 0.00 34.64 1.73
624 625 2.678336 GCACTGAGCGTTTTTAGCCTAT 59.322 45.455 0.00 0.00 34.64 2.57
625 626 2.073816 GCACTGAGCGTTTTTAGCCTA 58.926 47.619 0.00 0.00 34.64 3.93
626 627 0.875059 GCACTGAGCGTTTTTAGCCT 59.125 50.000 0.00 0.00 34.64 4.58
627 628 3.384702 GCACTGAGCGTTTTTAGCC 57.615 52.632 0.00 0.00 34.64 3.93
637 638 1.063174 CTCCTATTTTGCGCACTGAGC 59.937 52.381 11.12 0.00 40.87 4.26
638 639 1.667724 CCTCCTATTTTGCGCACTGAG 59.332 52.381 11.12 9.66 0.00 3.35
639 640 1.003118 ACCTCCTATTTTGCGCACTGA 59.997 47.619 11.12 0.00 0.00 3.41
640 641 1.453155 ACCTCCTATTTTGCGCACTG 58.547 50.000 11.12 0.00 0.00 3.66
641 642 2.500098 TCTACCTCCTATTTTGCGCACT 59.500 45.455 11.12 0.00 0.00 4.40
642 643 2.901249 TCTACCTCCTATTTTGCGCAC 58.099 47.619 11.12 0.00 0.00 5.34
643 644 3.838244 ATCTACCTCCTATTTTGCGCA 57.162 42.857 5.66 5.66 0.00 6.09
644 645 5.298347 ACTAATCTACCTCCTATTTTGCGC 58.702 41.667 0.00 0.00 0.00 6.09
645 646 7.091443 CCTACTAATCTACCTCCTATTTTGCG 58.909 42.308 0.00 0.00 0.00 4.85
646 647 6.874664 GCCTACTAATCTACCTCCTATTTTGC 59.125 42.308 0.00 0.00 0.00 3.68
647 648 7.235812 AGGCCTACTAATCTACCTCCTATTTTG 59.764 40.741 1.29 0.00 0.00 2.44
648 649 7.235812 CAGGCCTACTAATCTACCTCCTATTTT 59.764 40.741 3.98 0.00 0.00 1.82
649 650 6.726764 CAGGCCTACTAATCTACCTCCTATTT 59.273 42.308 3.98 0.00 0.00 1.40
650 651 6.257586 CAGGCCTACTAATCTACCTCCTATT 58.742 44.000 3.98 0.00 0.00 1.73
651 652 5.281821 CCAGGCCTACTAATCTACCTCCTAT 60.282 48.000 3.98 0.00 0.00 2.57
652 653 4.044317 CCAGGCCTACTAATCTACCTCCTA 59.956 50.000 3.98 0.00 0.00 2.94
653 654 3.181416 CCAGGCCTACTAATCTACCTCCT 60.181 52.174 3.98 0.00 0.00 3.69
654 655 3.166679 CCAGGCCTACTAATCTACCTCC 58.833 54.545 3.98 0.00 0.00 4.30
655 656 2.563620 GCCAGGCCTACTAATCTACCTC 59.436 54.545 3.98 0.00 0.00 3.85
656 657 2.610873 GCCAGGCCTACTAATCTACCT 58.389 52.381 3.98 0.00 0.00 3.08
657 658 1.272769 CGCCAGGCCTACTAATCTACC 59.727 57.143 3.98 0.00 0.00 3.18
658 659 1.962100 ACGCCAGGCCTACTAATCTAC 59.038 52.381 3.98 0.00 0.00 2.59
659 660 1.961394 CACGCCAGGCCTACTAATCTA 59.039 52.381 3.98 0.00 0.00 1.98
660 661 0.753262 CACGCCAGGCCTACTAATCT 59.247 55.000 3.98 0.00 0.00 2.40
661 662 0.880718 GCACGCCAGGCCTACTAATC 60.881 60.000 3.98 0.00 0.00 1.75
662 663 1.146263 GCACGCCAGGCCTACTAAT 59.854 57.895 3.98 0.00 0.00 1.73
663 664 2.582436 GCACGCCAGGCCTACTAA 59.418 61.111 3.98 0.00 0.00 2.24
686 687 3.248446 TATGCTAATCGGGCCGGCC 62.248 63.158 38.57 38.57 0.00 6.13
687 688 2.033194 GTATGCTAATCGGGCCGGC 61.033 63.158 27.98 21.18 0.00 6.13
688 689 1.736645 CGTATGCTAATCGGGCCGG 60.737 63.158 27.98 11.17 0.00 6.13
689 690 1.736645 CCGTATGCTAATCGGGCCG 60.737 63.158 22.51 22.51 40.49 6.13
690 691 4.278956 CCGTATGCTAATCGGGCC 57.721 61.111 0.00 0.00 40.49 5.80
693 694 1.736645 CGGCCCGTATGCTAATCGG 60.737 63.158 0.00 0.00 43.30 4.18
694 695 1.006571 ACGGCCCGTATGCTAATCG 60.007 57.895 7.20 0.00 38.73 3.34
695 696 1.566018 GCACGGCCCGTATGCTAATC 61.566 60.000 9.25 0.00 38.32 1.75
696 697 1.597027 GCACGGCCCGTATGCTAAT 60.597 57.895 9.25 0.00 38.32 1.73
697 698 2.202960 GCACGGCCCGTATGCTAA 60.203 61.111 9.25 0.00 38.32 3.09
698 699 4.230002 GGCACGGCCCGTATGCTA 62.230 66.667 9.25 0.00 44.06 3.49
715 716 2.124819 CTGCAGCCTGTAGCCCAG 60.125 66.667 0.00 0.00 45.47 4.45
720 721 3.494336 GCGTGCTGCAGCCTGTAG 61.494 66.667 34.64 20.99 45.45 2.74
749 750 1.657094 CGATTATTATACGGGCCGTGC 59.343 52.381 39.80 16.99 41.39 5.34
750 751 2.664568 CACGATTATTATACGGGCCGTG 59.335 50.000 39.80 22.32 41.39 4.94
751 752 2.950433 CACGATTATTATACGGGCCGT 58.050 47.619 35.91 35.91 44.35 5.68
755 756 4.679662 CCTAGGCACGATTATTATACGGG 58.320 47.826 0.00 0.00 0.00 5.28
756 757 4.110482 GCCTAGGCACGATTATTATACGG 58.890 47.826 29.33 0.00 41.49 4.02
757 758 3.789756 CGCCTAGGCACGATTATTATACG 59.210 47.826 32.47 7.82 42.06 3.06
758 759 4.110482 CCGCCTAGGCACGATTATTATAC 58.890 47.826 32.47 0.00 42.06 1.47
759 760 3.131577 CCCGCCTAGGCACGATTATTATA 59.868 47.826 32.47 0.00 42.06 0.98
760 761 2.093658 CCCGCCTAGGCACGATTATTAT 60.094 50.000 32.47 0.00 42.06 1.28
761 762 1.274167 CCCGCCTAGGCACGATTATTA 59.726 52.381 32.47 0.00 42.06 0.98
762 763 0.034896 CCCGCCTAGGCACGATTATT 59.965 55.000 32.47 0.00 42.06 1.40
763 764 1.671742 CCCGCCTAGGCACGATTAT 59.328 57.895 32.47 0.00 42.06 1.28
764 765 3.134879 CCCGCCTAGGCACGATTA 58.865 61.111 32.47 0.00 42.06 1.75
790 791 0.179048 CATCCTAATCGTGCCTGGCA 60.179 55.000 19.30 19.30 35.60 4.92
791 792 0.886490 CCATCCTAATCGTGCCTGGC 60.886 60.000 12.87 12.87 0.00 4.85
792 793 0.250467 CCCATCCTAATCGTGCCTGG 60.250 60.000 0.00 0.00 0.00 4.45
793 794 0.469917 ACCCATCCTAATCGTGCCTG 59.530 55.000 0.00 0.00 0.00 4.85
794 795 0.759346 GACCCATCCTAATCGTGCCT 59.241 55.000 0.00 0.00 0.00 4.75
795 796 0.600255 CGACCCATCCTAATCGTGCC 60.600 60.000 0.00 0.00 0.00 5.01
796 797 0.104304 ACGACCCATCCTAATCGTGC 59.896 55.000 0.00 0.00 45.50 5.34
799 800 0.600255 GGCACGACCCATCCTAATCG 60.600 60.000 0.00 0.00 40.39 3.34
800 801 3.307379 GGCACGACCCATCCTAATC 57.693 57.895 0.00 0.00 0.00 1.75
836 837 1.166531 GCTATAGCTGGCCAAACGGG 61.167 60.000 17.75 0.00 38.21 5.28
837 838 0.463654 TGCTATAGCTGGCCAAACGG 60.464 55.000 24.61 0.00 42.66 4.44
838 839 1.265095 CATGCTATAGCTGGCCAAACG 59.735 52.381 24.61 0.00 42.66 3.60
839 840 2.551459 CTCATGCTATAGCTGGCCAAAC 59.449 50.000 24.61 1.16 42.66 2.93
840 841 2.854963 CTCATGCTATAGCTGGCCAAA 58.145 47.619 24.61 3.70 42.66 3.28
841 842 1.544093 GCTCATGCTATAGCTGGCCAA 60.544 52.381 24.61 4.45 42.66 4.52
842 843 0.035881 GCTCATGCTATAGCTGGCCA 59.964 55.000 24.61 4.71 42.66 5.36
843 844 0.676151 GGCTCATGCTATAGCTGGCC 60.676 60.000 24.61 23.98 42.66 5.36
844 845 0.035881 TGGCTCATGCTATAGCTGGC 59.964 55.000 24.61 21.22 42.66 4.85
845 846 2.027469 TCATGGCTCATGCTATAGCTGG 60.027 50.000 24.61 16.32 41.18 4.85
846 847 3.263261 CTCATGGCTCATGCTATAGCTG 58.737 50.000 24.61 18.85 41.18 4.24
847 848 2.236644 CCTCATGGCTCATGCTATAGCT 59.763 50.000 24.61 8.42 41.18 3.32
848 849 2.027377 ACCTCATGGCTCATGCTATAGC 60.027 50.000 18.18 18.18 41.18 2.97
849 850 3.260128 TCACCTCATGGCTCATGCTATAG 59.740 47.826 9.54 0.00 41.18 1.31
850 851 3.007290 GTCACCTCATGGCTCATGCTATA 59.993 47.826 9.54 0.00 41.18 1.31
851 852 2.052468 TCACCTCATGGCTCATGCTAT 58.948 47.619 9.54 0.00 41.18 2.97
852 853 1.139654 GTCACCTCATGGCTCATGCTA 59.860 52.381 9.54 0.00 41.18 3.49
853 854 0.107312 GTCACCTCATGGCTCATGCT 60.107 55.000 9.54 0.00 41.18 3.79
854 855 0.393402 TGTCACCTCATGGCTCATGC 60.393 55.000 9.54 0.00 41.18 4.06
855 856 1.376543 GTGTCACCTCATGGCTCATG 58.623 55.000 8.41 8.41 42.60 3.07
856 857 0.254178 GGTGTCACCTCATGGCTCAT 59.746 55.000 15.22 0.00 34.73 2.90
857 858 1.679311 GGTGTCACCTCATGGCTCA 59.321 57.895 15.22 0.00 34.73 4.26
858 859 1.448540 CGGTGTCACCTCATGGCTC 60.449 63.158 19.82 0.00 35.66 4.70
859 860 1.913262 TCGGTGTCACCTCATGGCT 60.913 57.895 19.82 0.00 35.66 4.75
860 861 1.741770 GTCGGTGTCACCTCATGGC 60.742 63.158 19.82 1.91 35.66 4.40
861 862 1.446099 CGTCGGTGTCACCTCATGG 60.446 63.158 19.82 4.05 35.66 3.66
862 863 2.094659 GCGTCGGTGTCACCTCATG 61.095 63.158 19.82 12.07 35.66 3.07
863 864 2.261671 GCGTCGGTGTCACCTCAT 59.738 61.111 19.82 0.00 35.66 2.90
903 919 2.882137 GAGGATTTTCGTTGGTGGTCAA 59.118 45.455 0.00 0.00 0.00 3.18
904 920 2.105821 AGAGGATTTTCGTTGGTGGTCA 59.894 45.455 0.00 0.00 0.00 4.02
907 928 2.084546 GGAGAGGATTTTCGTTGGTGG 58.915 52.381 0.00 0.00 0.00 4.61
912 933 1.944430 GCCGTGGAGAGGATTTTCGTT 60.944 52.381 0.00 0.00 0.00 3.85
922 943 1.472376 GGAATGAGAAGCCGTGGAGAG 60.472 57.143 0.00 0.00 0.00 3.20
934 959 1.375396 CGTTGGTGCGGGAATGAGA 60.375 57.895 0.00 0.00 0.00 3.27
1332 1374 2.284995 GCCAGGGTCCTCTCCACT 60.285 66.667 0.00 0.00 0.00 4.00
1377 1419 0.458669 TCTCAGAACGCGATAACCCC 59.541 55.000 15.93 0.00 0.00 4.95
1380 1422 2.714985 GACGATCTCAGAACGCGATAAC 59.285 50.000 15.93 0.24 31.18 1.89
1381 1423 2.599142 CGACGATCTCAGAACGCGATAA 60.599 50.000 15.93 0.00 32.90 1.75
1383 1425 0.316278 CGACGATCTCAGAACGCGAT 60.316 55.000 15.93 0.00 32.90 4.58
1424 1468 1.859383 GGATCTAGAGCGGAGTTTGC 58.141 55.000 1.16 0.00 0.00 3.68
1429 1473 0.881159 ACGTCGGATCTAGAGCGGAG 60.881 60.000 17.43 13.61 0.00 4.63
1445 1489 0.038159 GTACTGCAGCTTGGAGACGT 60.038 55.000 15.27 0.00 38.14 4.34
2185 2230 5.163561 ACACAATTACCAATTTCCATAGCCG 60.164 40.000 0.00 0.00 0.00 5.52
2204 2251 6.488344 TGAAAACTCTGTTATGCCATACACAA 59.512 34.615 0.00 0.00 0.00 3.33
2664 2779 9.950496 ATACATTTCTAAGCATAACCTGGATAG 57.050 33.333 0.00 0.00 0.00 2.08
2696 3006 1.600957 GGCATGATGAGACACCGAATG 59.399 52.381 0.00 0.00 0.00 2.67
2700 3010 1.742761 AAAGGCATGATGAGACACCG 58.257 50.000 0.00 0.00 0.00 4.94
2711 3021 3.181456 TGGGAAAGAAACCAAAAGGCATG 60.181 43.478 0.00 0.00 32.89 4.06
2956 3488 6.092122 CCATGAAAACGTTATTGTAGCTCAGA 59.908 38.462 0.00 0.00 0.00 3.27
2970 3502 4.217550 CCTTATTGGTCACCATGAAAACGT 59.782 41.667 0.00 0.00 31.53 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.