Multiple sequence alignment - TraesCS6A01G016100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G016100 chr6A 100.000 3221 0 0 1 3221 7990233 7993453 0.000000e+00 5949.0
1 TraesCS6A01G016100 chr6A 89.676 1666 120 17 1565 3221 8197967 8196345 0.000000e+00 2076.0
2 TraesCS6A01G016100 chr6A 85.460 729 65 18 837 1554 8199047 8198349 0.000000e+00 721.0
3 TraesCS6A01G016100 chr6A 78.764 1036 188 24 1135 2154 9336110 9337129 0.000000e+00 665.0
4 TraesCS6A01G016100 chr6A 79.377 674 103 23 2556 3221 8194662 8194017 2.950000e-120 442.0
5 TraesCS6A01G016100 chr6A 81.301 123 22 1 981 1102 9473100 9473222 7.350000e-17 99.0
6 TraesCS6A01G016100 chr6B 92.043 2501 171 10 743 3221 14545704 14543210 0.000000e+00 3491.0
7 TraesCS6A01G016100 chr6B 92.817 1768 96 8 873 2615 14333249 14335010 0.000000e+00 2532.0
8 TraesCS6A01G016100 chr6B 81.241 1338 215 23 917 2230 14550361 14549036 0.000000e+00 1048.0
9 TraesCS6A01G016100 chr6B 95.993 549 22 0 2660 3208 14335207 14335755 0.000000e+00 893.0
10 TraesCS6A01G016100 chr6B 79.492 1102 202 17 1138 2227 15750929 15749840 0.000000e+00 761.0
11 TraesCS6A01G016100 chr6B 80.351 626 115 6 1608 2229 14629183 14628562 4.870000e-128 468.0
12 TraesCS6A01G016100 chr6B 87.629 291 23 6 212 501 14547237 14546959 3.100000e-85 326.0
13 TraesCS6A01G016100 chr6B 85.577 208 15 4 227 422 14332644 14332848 1.510000e-48 204.0
14 TraesCS6A01G016100 chr6B 92.593 135 7 2 237 371 14619519 14619388 1.180000e-44 191.0
15 TraesCS6A01G016100 chr6B 76.471 221 33 11 556 762 14550733 14550518 5.680000e-18 102.0
16 TraesCS6A01G016100 chr6B 79.381 97 20 0 983 1079 65175130 65175034 5.770000e-08 69.4
17 TraesCS6A01G016100 chr6D 90.593 2530 165 24 556 3061 7718388 7720868 0.000000e+00 3286.0
18 TraesCS6A01G016100 chr6D 83.565 2665 308 49 589 3221 7990354 7987788 0.000000e+00 2375.0
19 TraesCS6A01G016100 chr6D 79.267 1119 197 27 1130 2229 7998997 7997895 0.000000e+00 749.0
20 TraesCS6A01G016100 chr6D 97.126 174 3 1 1 172 418503236 418503063 3.140000e-75 292.0
21 TraesCS6A01G016100 chr6D 80.183 328 39 16 237 544 7990852 7990531 4.180000e-54 222.0
22 TraesCS6A01G016100 chr1B 89.737 799 56 17 806 1586 27364854 27364064 0.000000e+00 998.0
23 TraesCS6A01G016100 chr1B 78.642 1325 225 36 943 2230 27753081 27751778 0.000000e+00 826.0
24 TraesCS6A01G016100 chr1B 85.976 164 13 6 242 405 27673954 27673801 1.990000e-37 167.0
25 TraesCS6A01G016100 chr3A 96.000 175 5 1 1 173 500439728 500439554 1.890000e-72 283.0
26 TraesCS6A01G016100 chr4B 95.977 174 5 1 1 172 111713686 111713859 6.800000e-72 281.0
27 TraesCS6A01G016100 chr4A 95.977 174 5 1 1 172 448572300 448572473 6.800000e-72 281.0
28 TraesCS6A01G016100 chr4A 95.977 174 5 1 1 172 532347379 532347206 6.800000e-72 281.0
29 TraesCS6A01G016100 chr3D 95.977 174 5 1 1 172 477890109 477890282 6.800000e-72 281.0
30 TraesCS6A01G016100 chr2B 95.977 174 5 1 1 172 239515982 239515809 6.800000e-72 281.0
31 TraesCS6A01G016100 chr3B 95.954 173 5 1 1 171 673552553 673552725 2.450000e-71 279.0
32 TraesCS6A01G016100 chr7B 94.505 182 7 2 1 179 5632234 5632053 8.800000e-71 278.0
33 TraesCS6A01G016100 chr7B 90.566 106 4 2 214 315 408932314 408932417 5.610000e-28 135.0
34 TraesCS6A01G016100 chr7B 90.566 106 4 2 214 315 408947240 408947343 5.610000e-28 135.0
35 TraesCS6A01G016100 chrUn 89.815 108 5 2 212 315 318761613 318761718 2.020000e-27 134.0
36 TraesCS6A01G016100 chrUn 89.815 108 5 2 212 315 319095053 319095158 2.020000e-27 134.0
37 TraesCS6A01G016100 chrUn 89.815 108 5 2 212 315 341655242 341655137 2.020000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G016100 chr6A 7990233 7993453 3220 False 5949.000000 5949 100.000000 1 3221 1 chr6A.!!$F1 3220
1 TraesCS6A01G016100 chr6A 8194017 8199047 5030 True 1079.666667 2076 84.837667 837 3221 3 chr6A.!!$R1 2384
2 TraesCS6A01G016100 chr6A 9336110 9337129 1019 False 665.000000 665 78.764000 1135 2154 1 chr6A.!!$F2 1019
3 TraesCS6A01G016100 chr6B 14543210 14550733 7523 True 1241.750000 3491 84.346000 212 3221 4 chr6B.!!$R5 3009
4 TraesCS6A01G016100 chr6B 14332644 14335755 3111 False 1209.666667 2532 91.462333 227 3208 3 chr6B.!!$F1 2981
5 TraesCS6A01G016100 chr6B 15749840 15750929 1089 True 761.000000 761 79.492000 1138 2227 1 chr6B.!!$R3 1089
6 TraesCS6A01G016100 chr6B 14628562 14629183 621 True 468.000000 468 80.351000 1608 2229 1 chr6B.!!$R2 621
7 TraesCS6A01G016100 chr6D 7718388 7720868 2480 False 3286.000000 3286 90.593000 556 3061 1 chr6D.!!$F1 2505
8 TraesCS6A01G016100 chr6D 7987788 7990852 3064 True 1298.500000 2375 81.874000 237 3221 2 chr6D.!!$R3 2984
9 TraesCS6A01G016100 chr6D 7997895 7998997 1102 True 749.000000 749 79.267000 1130 2229 1 chr6D.!!$R1 1099
10 TraesCS6A01G016100 chr1B 27364064 27364854 790 True 998.000000 998 89.737000 806 1586 1 chr1B.!!$R1 780
11 TraesCS6A01G016100 chr1B 27751778 27753081 1303 True 826.000000 826 78.642000 943 2230 1 chr1B.!!$R3 1287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.033228 TTGCTTTTGCCACGGGAATG 59.967 50.0 0.0 0.0 46.87 2.67 F
1689 6577 0.040336 CGATACCGAGGATGGTCACG 60.040 60.0 0.0 0.0 42.62 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 6755 1.224870 GGGCCTTAGGGAGAGCAAC 59.775 63.158 0.84 0.0 33.58 4.17 R
2650 7591 0.389948 AGCGTCGATGTTCCAAGTCC 60.390 55.000 6.48 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.886816 CACTCTTAGCTTTTGACAATTATCAC 57.113 34.615 0.00 0.00 0.00 3.06
27 28 9.066892 ACTCTTAGCTTTTGACAATTATCACAA 57.933 29.630 0.00 0.00 0.00 3.33
32 33 6.369615 AGCTTTTGACAATTATCACAATTGCC 59.630 34.615 5.05 0.30 40.35 4.52
34 35 7.418840 TTTTGACAATTATCACAATTGCCAC 57.581 32.000 5.05 3.57 40.35 5.01
35 36 5.981088 TGACAATTATCACAATTGCCACT 57.019 34.783 5.05 0.00 40.35 4.00
36 37 5.953183 TGACAATTATCACAATTGCCACTC 58.047 37.500 5.05 1.83 40.35 3.51
37 38 5.711506 TGACAATTATCACAATTGCCACTCT 59.288 36.000 5.05 0.00 40.35 3.24
38 39 5.957798 ACAATTATCACAATTGCCACTCTG 58.042 37.500 5.05 0.00 40.35 3.35
39 40 5.711506 ACAATTATCACAATTGCCACTCTGA 59.288 36.000 5.05 0.71 40.35 3.27
41 42 6.839124 ATTATCACAATTGCCACTCTGAAA 57.161 33.333 5.05 0.00 0.00 2.69
43 44 5.733620 ATCACAATTGCCACTCTGAAAAT 57.266 34.783 5.05 0.00 0.00 1.82
44 45 5.534207 TCACAATTGCCACTCTGAAAATT 57.466 34.783 5.05 0.00 0.00 1.82
45 46 5.916318 TCACAATTGCCACTCTGAAAATTT 58.084 33.333 5.05 0.00 0.00 1.82
46 47 6.347696 TCACAATTGCCACTCTGAAAATTTT 58.652 32.000 5.05 2.28 0.00 1.82
47 48 6.258287 TCACAATTGCCACTCTGAAAATTTTG 59.742 34.615 8.47 0.00 0.00 2.44
48 49 5.007921 ACAATTGCCACTCTGAAAATTTTGC 59.992 36.000 8.47 4.25 0.00 3.68
49 50 4.405116 TTGCCACTCTGAAAATTTTGCT 57.595 36.364 8.47 0.00 0.00 3.91
51 52 4.768583 TGCCACTCTGAAAATTTTGCTTT 58.231 34.783 8.47 0.00 0.00 3.51
52 53 5.184711 TGCCACTCTGAAAATTTTGCTTTT 58.815 33.333 8.47 0.00 0.00 2.27
53 54 5.064962 TGCCACTCTGAAAATTTTGCTTTTG 59.935 36.000 8.47 0.31 0.00 2.44
55 56 5.504392 CACTCTGAAAATTTTGCTTTTGCC 58.496 37.500 8.47 0.00 46.87 4.52
56 57 5.064962 CACTCTGAAAATTTTGCTTTTGCCA 59.935 36.000 8.47 0.00 46.87 4.92
57 58 5.065090 ACTCTGAAAATTTTGCTTTTGCCAC 59.935 36.000 8.47 0.00 46.87 5.01
60 61 1.592064 AATTTTGCTTTTGCCACGGG 58.408 45.000 0.00 0.00 46.87 5.28
61 62 0.755686 ATTTTGCTTTTGCCACGGGA 59.244 45.000 0.00 0.00 46.87 5.14
62 63 0.537188 TTTTGCTTTTGCCACGGGAA 59.463 45.000 0.00 0.00 46.87 3.97
63 64 0.755686 TTTGCTTTTGCCACGGGAAT 59.244 45.000 0.00 0.00 46.87 3.01
64 65 0.033228 TTGCTTTTGCCACGGGAATG 59.967 50.000 0.00 0.00 46.87 2.67
65 66 1.079888 GCTTTTGCCACGGGAATGG 60.080 57.895 0.00 0.00 43.26 3.16
73 74 0.108709 CCACGGGAATGGCAATTGTG 60.109 55.000 7.40 0.00 31.52 3.33
74 75 0.887247 CACGGGAATGGCAATTGTGA 59.113 50.000 7.40 0.00 0.00 3.58
76 77 2.687425 CACGGGAATGGCAATTGTGATA 59.313 45.455 7.40 0.00 0.00 2.15
79 80 4.405358 ACGGGAATGGCAATTGTGATAATT 59.595 37.500 7.40 0.74 0.00 1.40
80 81 4.746115 CGGGAATGGCAATTGTGATAATTG 59.254 41.667 9.89 9.89 39.84 2.32
81 82 5.673514 GGGAATGGCAATTGTGATAATTGT 58.326 37.500 14.64 0.00 39.25 2.71
82 83 5.754890 GGGAATGGCAATTGTGATAATTGTC 59.245 40.000 11.59 11.59 41.29 3.18
89 90 7.714377 TGGCAATTGTGATAATTGTCAAAAACT 59.286 29.630 17.57 0.63 45.72 2.66
99 100 9.638239 GATAATTGTCAAAAACTAAGAATGGCA 57.362 29.630 0.00 0.00 0.00 4.92
100 101 9.995003 ATAATTGTCAAAAACTAAGAATGGCAA 57.005 25.926 0.00 0.00 39.59 4.52
101 102 8.729805 AATTGTCAAAAACTAAGAATGGCAAA 57.270 26.923 0.00 0.00 38.85 3.68
102 103 8.729805 ATTGTCAAAAACTAAGAATGGCAAAA 57.270 26.923 0.00 0.00 38.85 2.44
103 104 7.769272 TGTCAAAAACTAAGAATGGCAAAAG 57.231 32.000 0.00 0.00 0.00 2.27
104 105 7.327214 TGTCAAAAACTAAGAATGGCAAAAGT 58.673 30.769 0.00 0.00 0.00 2.66
105 106 7.277539 TGTCAAAAACTAAGAATGGCAAAAGTG 59.722 33.333 0.00 0.00 0.00 3.16
106 107 7.491048 GTCAAAAACTAAGAATGGCAAAAGTGA 59.509 33.333 0.00 0.00 0.00 3.41
107 108 8.203485 TCAAAAACTAAGAATGGCAAAAGTGAT 58.797 29.630 0.00 0.00 0.00 3.06
109 110 6.655078 AACTAAGAATGGCAAAAGTGATGT 57.345 33.333 0.00 0.00 0.00 3.06
110 111 6.259550 ACTAAGAATGGCAAAAGTGATGTC 57.740 37.500 0.00 0.00 0.00 3.06
111 112 5.769662 ACTAAGAATGGCAAAAGTGATGTCA 59.230 36.000 0.00 0.00 36.74 3.58
112 113 5.534207 AAGAATGGCAAAAGTGATGTCAA 57.466 34.783 0.00 0.00 35.78 3.18
113 114 5.534207 AGAATGGCAAAAGTGATGTCAAA 57.466 34.783 0.00 0.00 35.78 2.69
114 115 5.916318 AGAATGGCAAAAGTGATGTCAAAA 58.084 33.333 0.00 0.00 35.78 2.44
115 116 6.527423 AGAATGGCAAAAGTGATGTCAAAAT 58.473 32.000 0.00 0.00 35.78 1.82
116 117 6.647895 AGAATGGCAAAAGTGATGTCAAAATC 59.352 34.615 0.00 0.00 35.78 2.17
118 119 6.647334 TGGCAAAAGTGATGTCAAAATCTA 57.353 33.333 0.00 0.00 27.60 1.98
119 120 6.680810 TGGCAAAAGTGATGTCAAAATCTAG 58.319 36.000 0.00 0.00 27.60 2.43
120 121 6.489700 TGGCAAAAGTGATGTCAAAATCTAGA 59.510 34.615 0.00 0.00 27.60 2.43
121 122 7.025963 GGCAAAAGTGATGTCAAAATCTAGAG 58.974 38.462 0.00 0.00 0.00 2.43
122 123 7.308830 GGCAAAAGTGATGTCAAAATCTAGAGT 60.309 37.037 0.00 0.00 0.00 3.24
123 124 7.536622 GCAAAAGTGATGTCAAAATCTAGAGTG 59.463 37.037 0.00 0.00 0.00 3.51
124 125 7.678947 AAAGTGATGTCAAAATCTAGAGTGG 57.321 36.000 0.00 0.00 0.00 4.00
125 126 5.181748 AGTGATGTCAAAATCTAGAGTGGC 58.818 41.667 0.00 0.00 0.00 5.01
126 127 4.937620 GTGATGTCAAAATCTAGAGTGGCA 59.062 41.667 9.74 9.74 0.00 4.92
127 128 5.587844 GTGATGTCAAAATCTAGAGTGGCAT 59.412 40.000 16.59 16.59 38.95 4.40
129 130 7.280876 GTGATGTCAAAATCTAGAGTGGCATAA 59.719 37.037 16.61 9.91 36.49 1.90
131 132 6.115446 TGTCAAAATCTAGAGTGGCATAAGG 58.885 40.000 0.00 0.00 0.00 2.69
133 134 6.823689 GTCAAAATCTAGAGTGGCATAAGGAA 59.176 38.462 0.00 0.00 0.00 3.36
134 135 7.336931 GTCAAAATCTAGAGTGGCATAAGGAAA 59.663 37.037 0.00 0.00 0.00 3.13
135 136 7.888021 TCAAAATCTAGAGTGGCATAAGGAAAA 59.112 33.333 0.00 0.00 0.00 2.29
136 137 8.689972 CAAAATCTAGAGTGGCATAAGGAAAAT 58.310 33.333 0.00 0.00 0.00 1.82
137 138 8.829373 AAATCTAGAGTGGCATAAGGAAAATT 57.171 30.769 0.00 0.00 0.00 1.82
138 139 7.814264 ATCTAGAGTGGCATAAGGAAAATTG 57.186 36.000 0.00 0.00 0.00 2.32
140 141 3.448660 AGAGTGGCATAAGGAAAATTGGC 59.551 43.478 0.00 0.00 35.41 4.52
141 142 2.166254 AGTGGCATAAGGAAAATTGGCG 59.834 45.455 0.00 0.00 37.45 5.69
142 143 2.165437 GTGGCATAAGGAAAATTGGCGA 59.835 45.455 0.00 0.00 37.45 5.54
143 144 2.828520 TGGCATAAGGAAAATTGGCGAA 59.171 40.909 0.00 0.00 37.45 4.70
144 145 3.259374 TGGCATAAGGAAAATTGGCGAAA 59.741 39.130 0.00 0.00 37.45 3.46
145 146 4.081198 TGGCATAAGGAAAATTGGCGAAAT 60.081 37.500 0.00 0.00 37.45 2.17
146 147 4.507756 GGCATAAGGAAAATTGGCGAAATC 59.492 41.667 0.00 0.00 0.00 2.17
147 148 5.351458 GCATAAGGAAAATTGGCGAAATCT 58.649 37.500 0.00 0.00 0.00 2.40
148 149 6.460953 GGCATAAGGAAAATTGGCGAAATCTA 60.461 38.462 0.00 0.00 0.00 1.98
149 150 6.638468 GCATAAGGAAAATTGGCGAAATCTAG 59.362 38.462 0.00 0.00 0.00 2.43
150 151 7.468631 GCATAAGGAAAATTGGCGAAATCTAGA 60.469 37.037 0.00 0.00 0.00 2.43
151 152 6.442513 AAGGAAAATTGGCGAAATCTAGAG 57.557 37.500 0.00 0.00 0.00 2.43
152 153 5.501156 AGGAAAATTGGCGAAATCTAGAGT 58.499 37.500 0.00 0.00 0.00 3.24
153 154 5.355350 AGGAAAATTGGCGAAATCTAGAGTG 59.645 40.000 0.00 0.00 0.00 3.51
154 155 5.449177 GGAAAATTGGCGAAATCTAGAGTGG 60.449 44.000 0.00 0.00 0.00 4.00
155 156 2.024176 TTGGCGAAATCTAGAGTGGC 57.976 50.000 7.70 7.70 0.00 5.01
156 157 0.178068 TGGCGAAATCTAGAGTGGCC 59.822 55.000 22.01 22.01 39.48 5.36
157 158 0.178068 GGCGAAATCTAGAGTGGCCA 59.822 55.000 23.19 0.00 38.88 5.36
159 160 2.356135 GCGAAATCTAGAGTGGCCAAA 58.644 47.619 7.24 0.00 0.00 3.28
160 161 2.747446 GCGAAATCTAGAGTGGCCAAAA 59.253 45.455 7.24 0.00 0.00 2.44
161 162 3.378427 GCGAAATCTAGAGTGGCCAAAAT 59.622 43.478 7.24 0.00 0.00 1.82
162 163 4.574828 GCGAAATCTAGAGTGGCCAAAATA 59.425 41.667 7.24 0.00 0.00 1.40
163 164 5.065988 GCGAAATCTAGAGTGGCCAAAATAA 59.934 40.000 7.24 0.00 0.00 1.40
165 166 7.535139 CGAAATCTAGAGTGGCCAAAATAAAA 58.465 34.615 7.24 0.00 0.00 1.52
166 167 8.190784 CGAAATCTAGAGTGGCCAAAATAAAAT 58.809 33.333 7.24 0.00 0.00 1.82
170 171 9.875691 ATCTAGAGTGGCCAAAATAAAATTTTC 57.124 29.630 7.24 0.00 0.00 2.29
173 174 6.936335 AGAGTGGCCAAAATAAAATTTTCCTG 59.064 34.615 7.24 1.18 0.00 3.86
175 176 7.286313 AGTGGCCAAAATAAAATTTTCCTGAA 58.714 30.769 7.24 0.00 0.00 3.02
176 177 7.944000 AGTGGCCAAAATAAAATTTTCCTGAAT 59.056 29.630 7.24 0.00 0.00 2.57
177 178 9.225436 GTGGCCAAAATAAAATTTTCCTGAATA 57.775 29.630 7.24 0.00 0.00 1.75
178 179 9.799106 TGGCCAAAATAAAATTTTCCTGAATAA 57.201 25.926 0.61 0.00 0.00 1.40
186 187 9.919416 ATAAAATTTTCCTGAATAATTTGGGGG 57.081 29.630 6.72 0.00 33.20 5.40
240 3526 2.821969 ACAATCTTGTTCCACTGGATGC 59.178 45.455 0.00 0.00 38.47 3.91
247 3533 1.203441 TTCCACTGGATGCAGCCTCT 61.203 55.000 23.69 3.58 0.00 3.69
289 3576 6.713903 CACCCAGCATTTCTGAAGATACATAT 59.286 38.462 0.00 0.00 45.72 1.78
290 3577 7.879677 CACCCAGCATTTCTGAAGATACATATA 59.120 37.037 0.00 0.00 45.72 0.86
358 3646 4.631813 GGTTGGTTACTTATCAGCTGAGTG 59.368 45.833 22.96 15.84 0.00 3.51
371 3671 1.403514 GCTGAGTGCAGTAGTGGAGAC 60.404 57.143 0.00 0.00 44.17 3.36
375 3706 2.757868 GAGTGCAGTAGTGGAGACTGAT 59.242 50.000 6.96 0.00 46.01 2.90
418 3749 3.023950 GAGATCTCGACCCGACCG 58.976 66.667 7.04 0.00 0.00 4.79
419 3750 1.523258 GAGATCTCGACCCGACCGA 60.523 63.158 7.04 0.00 34.61 4.69
420 3751 0.885596 GAGATCTCGACCCGACCGAT 60.886 60.000 7.04 0.00 35.35 4.18
421 3752 1.167155 AGATCTCGACCCGACCGATG 61.167 60.000 0.00 0.00 35.35 3.84
422 3753 2.131294 GATCTCGACCCGACCGATGG 62.131 65.000 0.00 0.00 35.35 3.51
423 3754 2.619941 ATCTCGACCCGACCGATGGA 62.620 60.000 0.00 0.00 35.35 3.41
424 3755 2.124024 TCGACCCGACCGATGGAT 60.124 61.111 0.00 0.00 0.00 3.41
425 3756 2.027605 CGACCCGACCGATGGATG 59.972 66.667 0.00 0.00 0.00 3.51
459 3790 0.387239 AGGCGCTTTGAAATCGTTGC 60.387 50.000 7.64 0.00 0.00 4.17
461 3792 0.977674 GCGCTTTGAAATCGTTGCTC 59.022 50.000 0.00 0.00 0.00 4.26
533 4373 3.629398 GGGAGCATCATCAGGTTTAACAG 59.371 47.826 0.00 0.00 36.25 3.16
537 4377 4.009675 GCATCATCAGGTTTAACAGGTGA 58.990 43.478 5.47 5.47 0.00 4.02
563 4978 4.603989 TTGGTTGGTTACATCTCGTACA 57.396 40.909 0.00 0.00 0.00 2.90
583 4999 3.262405 ACAAGGGAAAAGCGTATCAGGTA 59.738 43.478 0.00 0.00 0.00 3.08
585 5001 2.169978 AGGGAAAAGCGTATCAGGTACC 59.830 50.000 2.73 2.73 0.00 3.34
615 5031 4.504514 CCCACACCAGATATGGATTCTCAG 60.505 50.000 14.70 0.00 35.33 3.35
622 5038 7.015098 CACCAGATATGGATTCTCAGTTCTACT 59.985 40.741 14.70 0.00 0.00 2.57
659 5085 5.526010 ACCGTTTCATTCGATGTAAGTTC 57.474 39.130 0.00 0.00 0.00 3.01
673 5099 7.333423 TCGATGTAAGTTCCATTTTTCCTACAG 59.667 37.037 0.00 0.00 0.00 2.74
677 5103 6.391227 AAGTTCCATTTTTCCTACAGTGTG 57.609 37.500 5.88 0.00 0.00 3.82
692 5118 4.473444 ACAGTGTGTCCCAAGAATTCATT 58.527 39.130 8.44 0.00 0.00 2.57
696 5122 3.501828 TGTGTCCCAAGAATTCATTGACG 59.498 43.478 8.44 4.02 0.00 4.35
700 5126 3.756434 TCCCAAGAATTCATTGACGGAAC 59.244 43.478 8.44 0.00 0.00 3.62
704 5130 3.000727 AGAATTCATTGACGGAACCGAC 58.999 45.455 20.14 14.04 42.83 4.79
790 5241 7.814107 TCAAAATATTGCCAGTCACTCAATTTC 59.186 33.333 0.00 0.00 36.45 2.17
1089 5573 2.421314 CACCGCCTCATATCCGCA 59.579 61.111 0.00 0.00 0.00 5.69
1689 6577 0.040336 CGATACCGAGGATGGTCACG 60.040 60.000 0.00 0.00 42.62 4.35
1846 6734 1.248785 CCTGAAGAAGACGGTCGGGA 61.249 60.000 1.89 0.00 39.79 5.14
1984 6872 0.736325 GTACATTGCTCGTCAGCCGT 60.736 55.000 0.00 0.00 46.26 5.68
2000 6888 1.804151 GCCGTCATTGCTCACTTACAA 59.196 47.619 0.00 0.00 0.00 2.41
2106 6994 2.835027 ACTGTTTTCAAGGAGACCGAC 58.165 47.619 0.00 0.00 0.00 4.79
2108 6996 2.544267 CTGTTTTCAAGGAGACCGACAC 59.456 50.000 0.00 0.00 0.00 3.67
2115 7003 3.006110 TCAAGGAGACCGACACGTATTTT 59.994 43.478 0.00 0.00 0.00 1.82
2154 7042 1.572085 CTCACAAGGAAGCTGCACCG 61.572 60.000 1.02 0.00 0.00 4.94
2574 7503 1.937546 GCTGTAGGTGCATGCCAACC 61.938 60.000 16.68 17.09 0.00 3.77
2578 7507 0.035152 TAGGTGCATGCCAACCTCAG 60.035 55.000 27.86 0.00 34.06 3.35
2649 7590 1.208052 CTGGAAGACGTGATGACCCAT 59.792 52.381 0.00 0.00 34.07 4.00
2650 7591 1.066215 TGGAAGACGTGATGACCCATG 60.066 52.381 0.00 0.00 0.00 3.66
2654 7595 0.537188 GACGTGATGACCCATGGACT 59.463 55.000 15.22 0.00 0.00 3.85
2771 7863 3.426859 GCGACTTGTGATGATTATCGGAG 59.573 47.826 0.00 0.00 36.04 4.63
2993 8090 1.427819 GCACCCGCATTTACCGAAG 59.572 57.895 0.00 0.00 38.36 3.79
3070 8168 4.984785 GCCTCACTTTCTTTTGTGAATTCC 59.015 41.667 2.27 0.00 41.80 3.01
3073 8171 4.097135 TCACTTTCTTTTGTGAATTCCGCA 59.903 37.500 2.27 0.00 39.82 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.506437 TGTGATAATTGTCAAAAGCTAAGAGTG 58.494 33.333 6.45 0.00 0.00 3.51
1 2 8.621532 TGTGATAATTGTCAAAAGCTAAGAGT 57.378 30.769 6.45 0.00 0.00 3.24
6 7 7.545265 GGCAATTGTGATAATTGTCAAAAGCTA 59.455 33.333 13.27 0.00 40.78 3.32
7 8 6.369615 GGCAATTGTGATAATTGTCAAAAGCT 59.630 34.615 13.27 1.45 40.78 3.74
8 9 6.147492 TGGCAATTGTGATAATTGTCAAAAGC 59.853 34.615 17.57 10.97 45.72 3.51
9 10 7.655236 TGGCAATTGTGATAATTGTCAAAAG 57.345 32.000 17.57 2.84 45.72 2.27
13 14 5.711506 AGAGTGGCAATTGTGATAATTGTCA 59.288 36.000 16.26 16.26 46.27 3.58
14 15 6.032094 CAGAGTGGCAATTGTGATAATTGTC 58.968 40.000 11.59 11.59 41.29 3.18
16 17 6.198650 TCAGAGTGGCAATTGTGATAATTG 57.801 37.500 9.89 9.89 39.84 2.32
17 18 6.839124 TTCAGAGTGGCAATTGTGATAATT 57.161 33.333 7.40 0.00 0.00 1.40
18 19 6.839124 TTTCAGAGTGGCAATTGTGATAAT 57.161 33.333 7.40 0.00 0.00 1.28
19 20 6.647334 TTTTCAGAGTGGCAATTGTGATAA 57.353 33.333 7.40 0.93 0.00 1.75
20 21 6.839124 ATTTTCAGAGTGGCAATTGTGATA 57.161 33.333 7.40 0.00 0.00 2.15
21 22 5.733620 ATTTTCAGAGTGGCAATTGTGAT 57.266 34.783 7.40 0.00 0.00 3.06
22 23 5.534207 AATTTTCAGAGTGGCAATTGTGA 57.466 34.783 7.40 0.00 0.00 3.58
23 24 6.423862 CAAAATTTTCAGAGTGGCAATTGTG 58.576 36.000 7.40 0.00 0.00 3.33
24 25 5.007921 GCAAAATTTTCAGAGTGGCAATTGT 59.992 36.000 7.40 0.00 0.00 2.71
25 26 5.237779 AGCAAAATTTTCAGAGTGGCAATTG 59.762 36.000 0.00 0.00 0.00 2.32
27 28 4.964593 AGCAAAATTTTCAGAGTGGCAAT 58.035 34.783 0.00 0.00 0.00 3.56
28 29 4.405116 AGCAAAATTTTCAGAGTGGCAA 57.595 36.364 0.00 0.00 0.00 4.52
29 30 4.405116 AAGCAAAATTTTCAGAGTGGCA 57.595 36.364 0.00 0.00 0.00 4.92
30 31 5.504392 CAAAAGCAAAATTTTCAGAGTGGC 58.496 37.500 0.00 0.00 30.01 5.01
32 33 5.064962 TGGCAAAAGCAAAATTTTCAGAGTG 59.935 36.000 0.00 0.00 30.01 3.51
34 35 5.504392 GTGGCAAAAGCAAAATTTTCAGAG 58.496 37.500 0.00 0.00 30.01 3.35
35 36 4.033817 CGTGGCAAAAGCAAAATTTTCAGA 59.966 37.500 0.00 0.00 30.01 3.27
36 37 4.273274 CGTGGCAAAAGCAAAATTTTCAG 58.727 39.130 0.00 0.00 30.01 3.02
37 38 3.064545 CCGTGGCAAAAGCAAAATTTTCA 59.935 39.130 0.00 0.00 30.01 2.69
38 39 3.547813 CCCGTGGCAAAAGCAAAATTTTC 60.548 43.478 0.00 0.00 30.01 2.29
39 40 2.357323 CCCGTGGCAAAAGCAAAATTTT 59.643 40.909 0.00 0.00 32.65 1.82
41 42 1.139853 TCCCGTGGCAAAAGCAAAATT 59.860 42.857 0.00 0.00 0.00 1.82
43 44 0.537188 TTCCCGTGGCAAAAGCAAAA 59.463 45.000 0.00 0.00 0.00 2.44
44 45 0.755686 ATTCCCGTGGCAAAAGCAAA 59.244 45.000 0.00 0.00 0.00 3.68
45 46 0.033228 CATTCCCGTGGCAAAAGCAA 59.967 50.000 0.00 0.00 0.00 3.91
46 47 1.664873 CATTCCCGTGGCAAAAGCA 59.335 52.632 0.00 0.00 0.00 3.91
47 48 1.079888 CCATTCCCGTGGCAAAAGC 60.080 57.895 0.00 0.00 31.43 3.51
54 55 0.108709 CACAATTGCCATTCCCGTGG 60.109 55.000 5.05 0.00 42.35 4.94
55 56 0.887247 TCACAATTGCCATTCCCGTG 59.113 50.000 5.05 0.00 0.00 4.94
56 57 1.851304 ATCACAATTGCCATTCCCGT 58.149 45.000 5.05 0.00 0.00 5.28
57 58 4.589216 ATTATCACAATTGCCATTCCCG 57.411 40.909 5.05 0.00 0.00 5.14
60 61 7.830940 TTGACAATTATCACAATTGCCATTC 57.169 32.000 5.05 1.83 40.35 2.67
61 62 8.618702 TTTTGACAATTATCACAATTGCCATT 57.381 26.923 5.05 0.00 40.35 3.16
62 63 8.505625 GTTTTTGACAATTATCACAATTGCCAT 58.494 29.630 5.05 0.00 40.35 4.40
63 64 7.714377 AGTTTTTGACAATTATCACAATTGCCA 59.286 29.630 5.05 2.75 40.35 4.92
64 65 8.086851 AGTTTTTGACAATTATCACAATTGCC 57.913 30.769 5.05 0.30 40.35 4.52
73 74 9.638239 TGCCATTCTTAGTTTTTGACAATTATC 57.362 29.630 0.00 0.00 0.00 1.75
74 75 9.995003 TTGCCATTCTTAGTTTTTGACAATTAT 57.005 25.926 0.00 0.00 0.00 1.28
76 77 8.729805 TTTGCCATTCTTAGTTTTTGACAATT 57.270 26.923 0.00 0.00 0.00 2.32
79 80 7.277539 CACTTTTGCCATTCTTAGTTTTTGACA 59.722 33.333 0.00 0.00 0.00 3.58
80 81 7.491048 TCACTTTTGCCATTCTTAGTTTTTGAC 59.509 33.333 0.00 0.00 0.00 3.18
81 82 7.551585 TCACTTTTGCCATTCTTAGTTTTTGA 58.448 30.769 0.00 0.00 0.00 2.69
82 83 7.769272 TCACTTTTGCCATTCTTAGTTTTTG 57.231 32.000 0.00 0.00 0.00 2.44
83 84 7.986889 ACATCACTTTTGCCATTCTTAGTTTTT 59.013 29.630 0.00 0.00 0.00 1.94
84 85 7.500141 ACATCACTTTTGCCATTCTTAGTTTT 58.500 30.769 0.00 0.00 0.00 2.43
85 86 7.054491 ACATCACTTTTGCCATTCTTAGTTT 57.946 32.000 0.00 0.00 0.00 2.66
86 87 6.265196 TGACATCACTTTTGCCATTCTTAGTT 59.735 34.615 0.00 0.00 0.00 2.24
87 88 5.769662 TGACATCACTTTTGCCATTCTTAGT 59.230 36.000 0.00 0.00 0.00 2.24
89 90 6.647334 TTGACATCACTTTTGCCATTCTTA 57.353 33.333 0.00 0.00 0.00 2.10
91 92 5.534207 TTTGACATCACTTTTGCCATTCT 57.466 34.783 0.00 0.00 0.00 2.40
92 93 6.647895 AGATTTTGACATCACTTTTGCCATTC 59.352 34.615 0.00 0.00 0.00 2.67
93 94 6.527423 AGATTTTGACATCACTTTTGCCATT 58.473 32.000 0.00 0.00 0.00 3.16
94 95 6.105397 AGATTTTGACATCACTTTTGCCAT 57.895 33.333 0.00 0.00 0.00 4.40
95 96 5.534207 AGATTTTGACATCACTTTTGCCA 57.466 34.783 0.00 0.00 0.00 4.92
96 97 6.913170 TCTAGATTTTGACATCACTTTTGCC 58.087 36.000 0.00 0.00 0.00 4.52
97 98 7.536622 CACTCTAGATTTTGACATCACTTTTGC 59.463 37.037 0.00 0.00 0.00 3.68
99 100 7.308830 GCCACTCTAGATTTTGACATCACTTTT 60.309 37.037 0.00 0.00 0.00 2.27
100 101 6.150140 GCCACTCTAGATTTTGACATCACTTT 59.850 38.462 0.00 0.00 0.00 2.66
101 102 5.645497 GCCACTCTAGATTTTGACATCACTT 59.355 40.000 0.00 0.00 0.00 3.16
102 103 5.181748 GCCACTCTAGATTTTGACATCACT 58.818 41.667 0.00 0.00 0.00 3.41
103 104 4.937620 TGCCACTCTAGATTTTGACATCAC 59.062 41.667 0.00 0.00 0.00 3.06
104 105 5.164620 TGCCACTCTAGATTTTGACATCA 57.835 39.130 0.00 0.00 0.00 3.07
105 106 7.041508 CCTTATGCCACTCTAGATTTTGACATC 60.042 40.741 0.00 0.00 0.00 3.06
106 107 6.769822 CCTTATGCCACTCTAGATTTTGACAT 59.230 38.462 0.00 0.00 0.00 3.06
107 108 6.070251 TCCTTATGCCACTCTAGATTTTGACA 60.070 38.462 0.00 0.00 0.00 3.58
109 110 6.560003 TCCTTATGCCACTCTAGATTTTGA 57.440 37.500 0.00 0.00 0.00 2.69
110 111 7.630242 TTTCCTTATGCCACTCTAGATTTTG 57.370 36.000 0.00 0.00 0.00 2.44
111 112 8.829373 ATTTTCCTTATGCCACTCTAGATTTT 57.171 30.769 0.00 0.00 0.00 1.82
112 113 8.689972 CAATTTTCCTTATGCCACTCTAGATTT 58.310 33.333 0.00 0.00 0.00 2.17
113 114 7.286316 CCAATTTTCCTTATGCCACTCTAGATT 59.714 37.037 0.00 0.00 0.00 2.40
114 115 6.774656 CCAATTTTCCTTATGCCACTCTAGAT 59.225 38.462 0.00 0.00 0.00 1.98
115 116 6.122277 CCAATTTTCCTTATGCCACTCTAGA 58.878 40.000 0.00 0.00 0.00 2.43
116 117 5.221126 GCCAATTTTCCTTATGCCACTCTAG 60.221 44.000 0.00 0.00 0.00 2.43
118 119 3.448660 GCCAATTTTCCTTATGCCACTCT 59.551 43.478 0.00 0.00 0.00 3.24
119 120 3.734902 CGCCAATTTTCCTTATGCCACTC 60.735 47.826 0.00 0.00 0.00 3.51
120 121 2.166254 CGCCAATTTTCCTTATGCCACT 59.834 45.455 0.00 0.00 0.00 4.00
121 122 2.165437 TCGCCAATTTTCCTTATGCCAC 59.835 45.455 0.00 0.00 0.00 5.01
122 123 2.451490 TCGCCAATTTTCCTTATGCCA 58.549 42.857 0.00 0.00 0.00 4.92
123 124 3.518634 TTCGCCAATTTTCCTTATGCC 57.481 42.857 0.00 0.00 0.00 4.40
124 125 5.351458 AGATTTCGCCAATTTTCCTTATGC 58.649 37.500 0.00 0.00 0.00 3.14
125 126 7.930217 TCTAGATTTCGCCAATTTTCCTTATG 58.070 34.615 0.00 0.00 0.00 1.90
126 127 7.775561 ACTCTAGATTTCGCCAATTTTCCTTAT 59.224 33.333 0.00 0.00 0.00 1.73
127 128 7.065803 CACTCTAGATTTCGCCAATTTTCCTTA 59.934 37.037 0.00 0.00 0.00 2.69
129 130 5.355350 CACTCTAGATTTCGCCAATTTTCCT 59.645 40.000 0.00 0.00 0.00 3.36
131 132 5.573146 CCACTCTAGATTTCGCCAATTTTC 58.427 41.667 0.00 0.00 0.00 2.29
133 134 3.378427 GCCACTCTAGATTTCGCCAATTT 59.622 43.478 0.00 0.00 0.00 1.82
134 135 2.945668 GCCACTCTAGATTTCGCCAATT 59.054 45.455 0.00 0.00 0.00 2.32
135 136 2.565841 GCCACTCTAGATTTCGCCAAT 58.434 47.619 0.00 0.00 0.00 3.16
136 137 1.406887 GGCCACTCTAGATTTCGCCAA 60.407 52.381 11.28 0.00 34.98 4.52
137 138 0.178068 GGCCACTCTAGATTTCGCCA 59.822 55.000 11.28 0.00 34.98 5.69
138 139 0.178068 TGGCCACTCTAGATTTCGCC 59.822 55.000 0.00 9.84 35.44 5.54
140 141 6.677781 TTATTTTGGCCACTCTAGATTTCG 57.322 37.500 3.88 0.00 0.00 3.46
141 142 9.875691 AATTTTATTTTGGCCACTCTAGATTTC 57.124 29.630 3.88 0.00 0.00 2.17
144 145 9.875691 GAAAATTTTATTTTGGCCACTCTAGAT 57.124 29.630 3.88 0.00 0.00 1.98
145 146 8.311109 GGAAAATTTTATTTTGGCCACTCTAGA 58.689 33.333 3.88 0.00 0.00 2.43
146 147 8.314021 AGGAAAATTTTATTTTGGCCACTCTAG 58.686 33.333 3.88 0.00 0.00 2.43
147 148 8.093927 CAGGAAAATTTTATTTTGGCCACTCTA 58.906 33.333 3.88 0.00 0.00 2.43
148 149 6.936335 CAGGAAAATTTTATTTTGGCCACTCT 59.064 34.615 3.88 0.00 0.00 3.24
149 150 6.934083 TCAGGAAAATTTTATTTTGGCCACTC 59.066 34.615 3.88 0.00 0.00 3.51
150 151 6.836242 TCAGGAAAATTTTATTTTGGCCACT 58.164 32.000 3.88 0.00 0.00 4.00
151 152 7.503521 TTCAGGAAAATTTTATTTTGGCCAC 57.496 32.000 3.88 0.00 0.00 5.01
152 153 9.799106 TTATTCAGGAAAATTTTATTTTGGCCA 57.201 25.926 0.00 0.00 0.00 5.36
160 161 9.919416 CCCCCAAATTATTCAGGAAAATTTTAT 57.081 29.630 2.75 0.00 32.05 1.40
205 206 4.587262 ACAAGATTGTTTTACAACTCCCCC 59.413 41.667 0.00 0.00 41.40 5.40
206 207 5.784578 ACAAGATTGTTTTACAACTCCCC 57.215 39.130 0.00 0.00 41.40 4.81
220 3506 2.821378 TGCATCCAGTGGAACAAGATTG 59.179 45.455 17.71 9.16 44.16 2.67
289 3576 3.639561 TCACTGCTGAAACTGTAGGTGTA 59.360 43.478 0.00 0.00 0.00 2.90
290 3577 2.434336 TCACTGCTGAAACTGTAGGTGT 59.566 45.455 0.00 0.00 0.00 4.16
358 3646 1.066303 CCGATCAGTCTCCACTACTGC 59.934 57.143 0.00 0.00 43.30 4.40
371 3671 2.002586 AGCGAATTCAACACCGATCAG 58.997 47.619 6.22 0.00 0.00 2.90
375 3706 1.573829 GGCAGCGAATTCAACACCGA 61.574 55.000 6.22 0.00 0.00 4.69
405 3736 2.619941 ATCCATCGGTCGGGTCGAGA 62.620 60.000 0.00 0.00 40.09 4.04
413 3744 0.610174 ATCCATCCATCCATCGGTCG 59.390 55.000 0.00 0.00 0.00 4.79
418 3749 1.339438 CCGTCCATCCATCCATCCATC 60.339 57.143 0.00 0.00 0.00 3.51
419 3750 0.694771 CCGTCCATCCATCCATCCAT 59.305 55.000 0.00 0.00 0.00 3.41
420 3751 0.399806 TCCGTCCATCCATCCATCCA 60.400 55.000 0.00 0.00 0.00 3.41
421 3752 0.764890 TTCCGTCCATCCATCCATCC 59.235 55.000 0.00 0.00 0.00 3.51
422 3753 1.271054 CCTTCCGTCCATCCATCCATC 60.271 57.143 0.00 0.00 0.00 3.51
423 3754 0.767375 CCTTCCGTCCATCCATCCAT 59.233 55.000 0.00 0.00 0.00 3.41
424 3755 1.983119 GCCTTCCGTCCATCCATCCA 61.983 60.000 0.00 0.00 0.00 3.41
425 3756 1.227973 GCCTTCCGTCCATCCATCC 60.228 63.158 0.00 0.00 0.00 3.51
459 3790 3.736252 GCATATAATATACGGCGCCAGAG 59.264 47.826 28.98 13.29 0.00 3.35
461 3792 3.453424 TGCATATAATATACGGCGCCAG 58.547 45.455 28.98 21.29 0.00 4.85
533 4373 5.944007 AGATGTAACCAACCAAATAGTCACC 59.056 40.000 0.00 0.00 0.00 4.02
537 4377 5.801380 ACGAGATGTAACCAACCAAATAGT 58.199 37.500 0.00 0.00 0.00 2.12
563 4978 3.370209 GGTACCTGATACGCTTTTCCCTT 60.370 47.826 4.06 0.00 34.22 3.95
585 5001 2.191786 TATCTGGTGTGGGCGTTGGG 62.192 60.000 0.00 0.00 0.00 4.12
638 5054 4.390603 TGGAACTTACATCGAATGAAACGG 59.609 41.667 0.00 0.00 0.00 4.44
640 5056 8.742554 AAAATGGAACTTACATCGAATGAAAC 57.257 30.769 0.00 0.00 0.00 2.78
653 5079 7.057894 ACACACTGTAGGAAAAATGGAACTTA 58.942 34.615 0.00 0.00 0.00 2.24
659 5085 3.506067 GGGACACACTGTAGGAAAAATGG 59.494 47.826 0.00 0.00 0.00 3.16
673 5099 4.613622 CGTCAATGAATTCTTGGGACACAC 60.614 45.833 18.41 9.19 39.29 3.82
677 5103 3.343617 TCCGTCAATGAATTCTTGGGAC 58.656 45.455 7.05 10.65 0.00 4.46
692 5118 2.149803 ATTGAGCGTCGGTTCCGTCA 62.150 55.000 11.04 4.84 0.00 4.35
696 5122 2.079049 GACATTGAGCGTCGGTTCC 58.921 57.895 0.00 0.00 0.00 3.62
704 5130 0.529337 AGATGAGCCGACATTGAGCG 60.529 55.000 0.00 0.00 0.00 5.03
937 5401 1.821061 AAGCCGTGGGTCAGTCTCTG 61.821 60.000 0.00 0.00 0.00 3.35
1019 5497 2.879002 GAGCATCTGGATGAGAACGA 57.121 50.000 13.96 0.00 41.20 3.85
1068 5552 1.674057 GGATATGAGGCGGTGGAGG 59.326 63.158 0.00 0.00 0.00 4.30
1644 6532 3.434319 AGCTTGGCAATGTCGCGG 61.434 61.111 6.13 0.00 0.00 6.46
1867 6755 1.224870 GGGCCTTAGGGAGAGCAAC 59.775 63.158 0.84 0.00 33.58 4.17
1984 6872 3.072330 TCCAGGTTGTAAGTGAGCAATGA 59.928 43.478 0.00 0.00 0.00 2.57
2000 6888 4.414956 TCATCCGGCCCTCCAGGT 62.415 66.667 0.00 0.00 38.26 4.00
2106 6994 5.666969 TGAACTTCTCCACAAAATACGTG 57.333 39.130 0.00 0.00 0.00 4.49
2108 6996 6.907212 GCATATGAACTTCTCCACAAAATACG 59.093 38.462 6.97 0.00 0.00 3.06
2115 7003 2.846206 AGGGCATATGAACTTCTCCACA 59.154 45.455 6.97 0.00 0.00 4.17
2154 7042 3.198872 GGCATAGTCTTCAGCAAGGTAC 58.801 50.000 0.00 0.00 0.00 3.34
2329 7248 8.829373 AAGGATAGATTTTAGAAAGCCACATT 57.171 30.769 0.00 0.00 0.00 2.71
2409 7328 6.762108 ACGATTATGAAGTAAAAGCTCAACG 58.238 36.000 0.00 0.00 0.00 4.10
2574 7503 2.063378 GGGGTCTCTGGCCTCTGAG 61.063 68.421 3.32 9.42 39.43 3.35
2578 7507 1.383803 ATCTGGGGTCTCTGGCCTC 60.384 63.158 3.32 0.00 0.00 4.70
2649 7590 0.669318 GCGTCGATGTTCCAAGTCCA 60.669 55.000 6.48 0.00 0.00 4.02
2650 7591 0.389948 AGCGTCGATGTTCCAAGTCC 60.390 55.000 6.48 0.00 0.00 3.85
2654 7595 1.730064 GCTTAAGCGTCGATGTTCCAA 59.270 47.619 12.53 0.00 0.00 3.53
2771 7863 9.455847 GCATCATCTAAAAGTAATTGAATGACC 57.544 33.333 0.00 0.00 0.00 4.02
2933 8025 6.317789 TGTTAGTGATGAAAAAGAAGCAGG 57.682 37.500 0.00 0.00 0.00 4.85
2990 8087 0.664761 TGCAGCTCACAGTTTGCTTC 59.335 50.000 0.00 0.00 37.45 3.86
2993 8090 1.415374 CAATGCAGCTCACAGTTTGC 58.585 50.000 0.00 0.00 37.09 3.68
3070 8168 0.583438 CACAACCTCAACAGACTGCG 59.417 55.000 1.25 0.00 0.00 5.18
3073 8171 5.552870 ACTAATCACAACCTCAACAGACT 57.447 39.130 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.